data_2CVJ # _entry.id 2CVJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CVJ RCSB RCSB024669 WWPDB D_1000024669 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001393.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CVJ _pdbx_database_status.recvd_initial_deposition_date 2005-06-04 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kashihara, A.' 1 'Yokoyama, S.' 2 'Kuramitsu, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Crystal Structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kashihara, A.' 1 primary 'Yokoyama, S.' 2 primary 'Kuramitsu, S.' 3 # _cell.entry_id 2CVJ _cell.length_a 64.050 _cell.length_b 79.690 _cell.length_c 83.260 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CVJ _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'thioredoxin reductase related protein' 19246.701 1 ? ? ? ? 2 non-polymer syn 'FLAVIN-ADENINE DINUCLEOTIDE' 785.550 1 ? ? ? ? 3 water nat water 18.015 133 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG VVKGVRD(MSE)GGVFEVETEEGVEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPGHA IISAGDGAYVAVHLVSDLRGEPYKDHAL ; _entity_poly.pdbx_seq_one_letter_code_can ;MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKG VRDMGGVFEVETEEGVEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPGHAIISAGDGA YVAVHLVSDLRGEPYKDHAL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001393.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 TRP n 1 3 ASP n 1 4 VAL n 1 5 ILE n 1 6 VAL n 1 7 VAL n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 PRO n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 SER n 1 16 ALA n 1 17 ALA n 1 18 LEU n 1 19 PHE n 1 20 LEU n 1 21 ALA n 1 22 ARG n 1 23 ALA n 1 24 GLY n 1 25 LEU n 1 26 LYS n 1 27 VAL n 1 28 LEU n 1 29 VAL n 1 30 LEU n 1 31 ASP n 1 32 GLY n 1 33 GLY n 1 34 ARG n 1 35 SER n 1 36 LYS n 1 37 VAL n 1 38 LYS n 1 39 GLY n 1 40 VAL n 1 41 SER n 1 42 ARG n 1 43 VAL n 1 44 PRO n 1 45 ASN n 1 46 TYR n 1 47 PRO n 1 48 GLY n 1 49 LEU n 1 50 LEU n 1 51 ASP n 1 52 GLU n 1 53 PRO n 1 54 SER n 1 55 GLY n 1 56 GLU n 1 57 GLU n 1 58 LEU n 1 59 LEU n 1 60 ARG n 1 61 ARG n 1 62 LEU n 1 63 GLU n 1 64 ALA n 1 65 HIS n 1 66 ALA n 1 67 ARG n 1 68 ARG n 1 69 TYR n 1 70 GLY n 1 71 ALA n 1 72 GLU n 1 73 VAL n 1 74 ARG n 1 75 PRO n 1 76 GLY n 1 77 VAL n 1 78 VAL n 1 79 LYS n 1 80 GLY n 1 81 VAL n 1 82 ARG n 1 83 ASP n 1 84 MSE n 1 85 GLY n 1 86 GLY n 1 87 VAL n 1 88 PHE n 1 89 GLU n 1 90 VAL n 1 91 GLU n 1 92 THR n 1 93 GLU n 1 94 GLU n 1 95 GLY n 1 96 VAL n 1 97 GLU n 1 98 LYS n 1 99 ALA n 1 100 GLU n 1 101 ARG n 1 102 LEU n 1 103 LEU n 1 104 LEU n 1 105 CYS n 1 106 THR n 1 107 HIS n 1 108 LYS n 1 109 ASP n 1 110 PRO n 1 111 THR n 1 112 LEU n 1 113 PRO n 1 114 SER n 1 115 LEU n 1 116 LEU n 1 117 GLY n 1 118 LEU n 1 119 THR n 1 120 ARG n 1 121 ARG n 1 122 GLY n 1 123 ALA n 1 124 TYR n 1 125 ILE n 1 126 ASP n 1 127 THR n 1 128 ASP n 1 129 GLU n 1 130 GLY n 1 131 GLY n 1 132 ARG n 1 133 THR n 1 134 SER n 1 135 TYR n 1 136 PRO n 1 137 ARG n 1 138 VAL n 1 139 TYR n 1 140 ALA n 1 141 ALA n 1 142 GLY n 1 143 VAL n 1 144 ALA n 1 145 ARG n 1 146 GLY n 1 147 LYS n 1 148 VAL n 1 149 PRO n 1 150 GLY n 1 151 HIS n 1 152 ALA n 1 153 ILE n 1 154 ILE n 1 155 SER n 1 156 ALA n 1 157 GLY n 1 158 ASP n 1 159 GLY n 1 160 ALA n 1 161 TYR n 1 162 VAL n 1 163 ALA n 1 164 VAL n 1 165 HIS n 1 166 LEU n 1 167 VAL n 1 168 SER n 1 169 ASP n 1 170 LEU n 1 171 ARG n 1 172 GLY n 1 173 GLU n 1 174 PRO n 1 175 TYR n 1 176 LYS n 1 177 ASP n 1 178 HIS n 1 179 ALA n 1 180 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SLC3_THET8 _struct_ref.pdbx_db_accession Q5SLC3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKG VRDMGGVFEVETEEGVEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPGHAIISAGDGA YVAVHLVSDLRGEPYKDHAL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CVJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 180 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SLC3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 180 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 180 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CVJ MSE A 1 ? UNP Q5SLC3 MET 1 'MODIFIED RESIDUE' 1 1 1 2CVJ MSE A 84 ? UNP Q5SLC3 MET 84 'MODIFIED RESIDUE' 84 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FAD non-polymer . 'FLAVIN-ADENINE DINUCLEOTIDE' ? 'C27 H33 N9 O15 P2' 785.550 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CVJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 55.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '0.3M NaH2 Phosphate, 0.9M K2H Phosphate, pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2004-06-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si Double Crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97909 1.0 2 0.9 1.0 3 0.97933 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97909, 0.9, 0.97933' # _reflns.entry_id 2CVJ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 31.97 _reflns.d_resolution_high 1.7 _reflns.number_obs 23729 _reflns.number_all 164790 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.2 _reflns.B_iso_Wilson_estimate 11.8 _reflns.pdbx_redundancy 6.94 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.129 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.2 _reflns_shell.pdbx_redundancy 7.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2CVJ _refine.ls_number_reflns_obs 14646 _refine.ls_number_reflns_all 14646 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F .0 _refine.pdbx_data_cutoff_high_absF 1766148.32 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.38 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_obs 0.203 _refine.ls_R_factor_all 0.206 _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.236 _refine.ls_R_factor_R_free_error .006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 1487 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 10.9 _refine.aniso_B[1][1] -.82 _refine.aniso_B[2][2] -1.73 _refine.aniso_B[3][3] 2.56 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .413362 _refine.solvent_model_param_bsol 47.6635 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2CVJ _refine_analyze.Luzzati_coordinate_error_obs .22 _refine_analyze.Luzzati_sigma_a_obs -.06 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .26 _refine_analyze.Luzzati_sigma_a_free .13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1348 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 1534 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 19.38 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d .90 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.17 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.67 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.19 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.12 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2185 _refine_ls_shell.R_factor_R_work 0.189 _refine_ls_shell.percent_reflns_obs 99.9 _refine_ls_shell.R_factor_R_free 0.25 _refine_ls_shell.R_factor_R_free_error .016 _refine_ls_shell.percent_reflns_R_free 9.9 _refine_ls_shell.number_reflns_R_free 239 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 fad_xplor_param.txt fad_xplor_top.txt 'X-RAY DIFFRACTION' # _struct.entry_id 2CVJ _struct.title 'Crystal Structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8' _struct.pdbx_descriptor 'thioredoxin reductase related protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CVJ _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'thioredoxin reductase-related protein, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 10 ? ALA A 23 ? GLY A 10 ALA A 23 1 ? 14 HELX_P HELX_P2 2 SER A 54 ? TYR A 69 ? SER A 54 TYR A 69 1 ? 16 HELX_P HELX_P3 3 PRO A 110 ? LEU A 116 ? PRO A 110 LEU A 116 1 ? 7 HELX_P HELX_P4 4 GLY A 142 ? GLY A 146 ? GLY A 142 GLY A 146 5 ? 5 HELX_P HELX_P5 5 HIS A 151 ? GLY A 172 ? HIS A 151 GLY A 172 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A TRP 2 N ? ? A MSE 1 A TRP 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A ASP 83 C ? ? ? 1_555 A MSE 84 N ? ? A ASP 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 84 C ? ? ? 1_555 A GLY 85 N ? ? A MSE 84 A GLY 85 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 148 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 148 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 149 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 149 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.20 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 72 ? PRO A 75 ? GLU A 72 PRO A 75 A 2 VAL A 27 ? ASP A 31 ? VAL A 27 ASP A 31 A 3 TRP A 2 ? VAL A 7 ? TRP A 2 VAL A 7 A 4 VAL A 96 ? LEU A 104 ? VAL A 96 LEU A 104 A 5 PHE A 88 ? GLU A 91 ? PHE A 88 GLU A 91 A 6 GLY A 80 ? ASP A 83 ? GLY A 80 ASP A 83 B 1 GLU A 72 ? PRO A 75 ? GLU A 72 PRO A 75 B 2 VAL A 27 ? ASP A 31 ? VAL A 27 ASP A 31 B 3 TRP A 2 ? VAL A 7 ? TRP A 2 VAL A 7 B 4 VAL A 96 ? LEU A 104 ? VAL A 96 LEU A 104 B 5 VAL A 138 ? ALA A 140 ? VAL A 138 ALA A 140 C 1 ARG A 120 ? ARG A 121 ? ARG A 120 ARG A 121 C 2 TYR A 124 ? ILE A 125 ? TYR A 124 ILE A 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 74 ? O ARG A 74 N VAL A 29 ? N VAL A 29 A 2 3 O LEU A 28 ? O LEU A 28 N VAL A 6 ? N VAL A 6 A 3 4 N VAL A 7 ? N VAL A 7 O LEU A 103 ? O LEU A 103 A 4 5 O ALA A 99 ? O ALA A 99 N PHE A 88 ? N PHE A 88 A 5 6 O GLU A 91 ? O GLU A 91 N GLY A 80 ? N GLY A 80 B 1 2 O ARG A 74 ? O ARG A 74 N VAL A 29 ? N VAL A 29 B 2 3 O LEU A 28 ? O LEU A 28 N VAL A 6 ? N VAL A 6 B 3 4 N VAL A 7 ? N VAL A 7 O LEU A 103 ? O LEU A 103 B 4 5 N LEU A 102 ? N LEU A 102 O TYR A 139 ? O TYR A 139 C 1 2 N ARG A 121 ? N ARG A 121 O TYR A 124 ? O TYR A 124 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 37 _struct_site.details 'BINDING SITE FOR RESIDUE FAD A 2304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 37 VAL A 7 ? VAL A 7 . ? 1_555 ? 2 AC1 37 GLY A 8 ? GLY A 8 . ? 1_555 ? 3 AC1 37 GLY A 10 ? GLY A 10 . ? 1_555 ? 4 AC1 37 PRO A 11 ? PRO A 11 . ? 1_555 ? 5 AC1 37 SER A 12 ? SER A 12 . ? 1_555 ? 6 AC1 37 LEU A 30 ? LEU A 30 . ? 1_555 ? 7 AC1 37 ASP A 31 ? ASP A 31 . ? 1_555 ? 8 AC1 37 GLY A 32 ? GLY A 32 . ? 1_555 ? 9 AC1 37 GLY A 33 ? GLY A 33 . ? 1_555 ? 10 AC1 37 ARG A 34 ? ARG A 34 . ? 1_555 ? 11 AC1 37 SER A 35 ? SER A 35 . ? 1_555 ? 12 AC1 37 LYS A 36 ? LYS A 36 . ? 1_555 ? 13 AC1 37 VAL A 37 ? VAL A 37 . ? 1_555 ? 14 AC1 37 VAL A 40 ? VAL A 40 . ? 1_555 ? 15 AC1 37 PRO A 44 ? PRO A 44 . ? 1_555 ? 16 AC1 37 ASN A 45 ? ASN A 45 . ? 1_555 ? 17 AC1 37 GLY A 76 ? GLY A 76 . ? 1_555 ? 18 AC1 37 VAL A 77 ? VAL A 77 . ? 1_555 ? 19 AC1 37 VAL A 78 ? VAL A 78 . ? 1_555 ? 20 AC1 37 CYS A 105 ? CYS A 105 . ? 1_555 ? 21 AC1 37 THR A 106 ? THR A 106 . ? 1_555 ? 22 AC1 37 HIS A 107 ? HIS A 107 . ? 1_555 ? 23 AC1 37 VAL A 143 ? VAL A 143 . ? 1_555 ? 24 AC1 37 GLY A 150 ? GLY A 150 . ? 1_555 ? 25 AC1 37 HIS A 151 ? HIS A 151 . ? 1_555 ? 26 AC1 37 ALA A 152 ? ALA A 152 . ? 1_555 ? 27 AC1 37 SER A 155 ? SER A 155 . ? 1_555 ? 28 AC1 37 ASP A 177 ? ASP A 177 . ? 4_565 ? 29 AC1 37 HIS A 178 ? HIS A 178 . ? 4_565 ? 30 AC1 37 ALA A 179 ? ALA A 179 . ? 4_565 ? 31 AC1 37 HOH C . ? HOH A 2306 . ? 1_555 ? 32 AC1 37 HOH C . ? HOH A 2307 . ? 1_555 ? 33 AC1 37 HOH C . ? HOH A 2312 . ? 1_555 ? 34 AC1 37 HOH C . ? HOH A 2380 . ? 1_555 ? 35 AC1 37 HOH C . ? HOH A 2382 . ? 1_555 ? 36 AC1 37 HOH C . ? HOH A 2389 . ? 1_555 ? 37 AC1 37 HOH C . ? HOH A 2395 . ? 1_555 ? # _database_PDB_matrix.entry_id 2CVJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _atom_sites.entry_id 2CVJ _atom_sites.fract_transf_matrix[1][1] .015613 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .012549 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .012011 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 TRP 2 2 2 TRP TRP A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 MSE 84 84 84 MSE MSE A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 TYR 124 124 124 TYR TYR A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 TYR 135 135 135 TYR TYR A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 PRO 149 149 149 PRO PRO A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 HIS 151 151 151 HIS HIS A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 HIS 165 165 165 HIS HIS A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 TYR 175 175 175 TYR TYR A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 HIS 178 178 178 HIS HIS A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 LEU 180 180 180 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD 1 2304 2304 FAD FAD A . C 3 HOH 1 2305 1 HOH HOH A . C 3 HOH 2 2306 2 HOH HOH A . C 3 HOH 3 2307 3 HOH HOH A . C 3 HOH 4 2308 4 HOH HOH A . C 3 HOH 5 2309 5 HOH HOH A . C 3 HOH 6 2310 6 HOH HOH A . C 3 HOH 7 2311 7 HOH HOH A . C 3 HOH 8 2312 8 HOH HOH A . C 3 HOH 9 2313 9 HOH HOH A . C 3 HOH 10 2314 10 HOH HOH A . C 3 HOH 11 2315 11 HOH HOH A . C 3 HOH 12 2316 12 HOH HOH A . C 3 HOH 13 2317 13 HOH HOH A . C 3 HOH 14 2318 14 HOH HOH A . C 3 HOH 15 2319 15 HOH HOH A . C 3 HOH 16 2320 16 HOH HOH A . C 3 HOH 17 2321 17 HOH HOH A . C 3 HOH 18 2322 18 HOH HOH A . C 3 HOH 19 2323 19 HOH HOH A . C 3 HOH 20 2324 20 HOH HOH A . C 3 HOH 21 2325 21 HOH HOH A . C 3 HOH 22 2326 22 HOH HOH A . C 3 HOH 23 2327 23 HOH HOH A . C 3 HOH 24 2328 24 HOH HOH A . C 3 HOH 25 2329 25 HOH HOH A . C 3 HOH 26 2330 26 HOH HOH A . C 3 HOH 27 2331 27 HOH HOH A . C 3 HOH 28 2332 28 HOH HOH A . C 3 HOH 29 2333 29 HOH HOH A . C 3 HOH 30 2334 30 HOH HOH A . C 3 HOH 31 2335 31 HOH HOH A . C 3 HOH 32 2336 32 HOH HOH A . C 3 HOH 33 2337 33 HOH HOH A . C 3 HOH 34 2338 34 HOH HOH A . C 3 HOH 35 2339 35 HOH HOH A . C 3 HOH 36 2340 36 HOH HOH A . C 3 HOH 37 2341 37 HOH HOH A . C 3 HOH 38 2342 38 HOH HOH A . C 3 HOH 39 2343 39 HOH HOH A . C 3 HOH 40 2344 40 HOH HOH A . C 3 HOH 41 2345 41 HOH HOH A . C 3 HOH 42 2346 42 HOH HOH A . C 3 HOH 43 2347 43 HOH HOH A . C 3 HOH 44 2348 44 HOH HOH A . C 3 HOH 45 2349 45 HOH HOH A . C 3 HOH 46 2350 46 HOH HOH A . C 3 HOH 47 2351 47 HOH HOH A . C 3 HOH 48 2352 48 HOH HOH A . C 3 HOH 49 2353 49 HOH HOH A . C 3 HOH 50 2354 50 HOH HOH A . C 3 HOH 51 2355 51 HOH HOH A . C 3 HOH 52 2356 52 HOH HOH A . C 3 HOH 53 2357 53 HOH HOH A . C 3 HOH 54 2358 54 HOH HOH A . C 3 HOH 55 2359 55 HOH HOH A . C 3 HOH 56 2360 56 HOH HOH A . C 3 HOH 57 2361 57 HOH HOH A . C 3 HOH 58 2362 58 HOH HOH A . C 3 HOH 59 2363 59 HOH HOH A . C 3 HOH 60 2364 60 HOH HOH A . C 3 HOH 61 2365 61 HOH HOH A . C 3 HOH 62 2366 62 HOH HOH A . C 3 HOH 63 2367 63 HOH HOH A . C 3 HOH 64 2368 64 HOH HOH A . C 3 HOH 65 2369 65 HOH HOH A . C 3 HOH 66 2370 66 HOH HOH A . C 3 HOH 67 2371 67 HOH HOH A . C 3 HOH 68 2372 68 HOH HOH A . C 3 HOH 69 2373 69 HOH HOH A . C 3 HOH 70 2374 70 HOH HOH A . C 3 HOH 71 2375 71 HOH HOH A . C 3 HOH 72 2376 72 HOH HOH A . C 3 HOH 73 2377 73 HOH HOH A . C 3 HOH 74 2378 74 HOH HOH A . C 3 HOH 75 2379 75 HOH HOH A . C 3 HOH 76 2380 76 HOH HOH A . C 3 HOH 77 2381 77 HOH HOH A . C 3 HOH 78 2382 78 HOH HOH A . C 3 HOH 79 2383 79 HOH HOH A . C 3 HOH 80 2384 80 HOH HOH A . C 3 HOH 81 2385 81 HOH HOH A . C 3 HOH 82 2386 82 HOH HOH A . C 3 HOH 83 2387 83 HOH HOH A . C 3 HOH 84 2388 84 HOH HOH A . C 3 HOH 85 2389 85 HOH HOH A . C 3 HOH 86 2390 86 HOH HOH A . C 3 HOH 87 2391 87 HOH HOH A . C 3 HOH 88 2392 88 HOH HOH A . C 3 HOH 89 2393 89 HOH HOH A . C 3 HOH 90 2394 90 HOH HOH A . C 3 HOH 91 2395 91 HOH HOH A . C 3 HOH 92 2396 92 HOH HOH A . C 3 HOH 93 2397 93 HOH HOH A . C 3 HOH 94 2398 94 HOH HOH A . C 3 HOH 95 2399 95 HOH HOH A . C 3 HOH 96 2400 96 HOH HOH A . C 3 HOH 97 2401 97 HOH HOH A . C 3 HOH 98 2402 98 HOH HOH A . C 3 HOH 99 2403 99 HOH HOH A . C 3 HOH 100 2404 100 HOH HOH A . C 3 HOH 101 2405 101 HOH HOH A . C 3 HOH 102 2406 102 HOH HOH A . C 3 HOH 103 2407 103 HOH HOH A . C 3 HOH 104 2408 104 HOH HOH A . C 3 HOH 105 2409 105 HOH HOH A . C 3 HOH 106 2410 106 HOH HOH A . C 3 HOH 107 2411 107 HOH HOH A . C 3 HOH 108 2412 108 HOH HOH A . C 3 HOH 109 2413 109 HOH HOH A . C 3 HOH 110 2414 110 HOH HOH A . C 3 HOH 111 2415 111 HOH HOH A . C 3 HOH 112 2416 112 HOH HOH A . C 3 HOH 113 2417 113 HOH HOH A . C 3 HOH 114 2418 114 HOH HOH A . C 3 HOH 115 2419 115 HOH HOH A . C 3 HOH 116 2420 116 HOH HOH A . C 3 HOH 117 2421 117 HOH HOH A . C 3 HOH 118 2422 118 HOH HOH A . C 3 HOH 119 2423 119 HOH HOH A . C 3 HOH 120 2424 120 HOH HOH A . C 3 HOH 121 2425 121 HOH HOH A . C 3 HOH 122 2426 122 HOH HOH A . C 3 HOH 123 2427 123 HOH HOH A . C 3 HOH 124 2428 124 HOH HOH A . C 3 HOH 125 2429 125 HOH HOH A . C 3 HOH 126 2430 126 HOH HOH A . C 3 HOH 127 2431 127 HOH HOH A . C 3 HOH 128 2432 128 HOH HOH A . C 3 HOH 129 2433 129 HOH HOH A . C 3 HOH 130 2434 130 HOH HOH A . C 3 HOH 131 2435 131 HOH HOH A . C 3 HOH 132 2436 132 HOH HOH A . C 3 HOH 133 2437 133 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 84 A MSE 84 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 6650 ? 2 MORE -31 ? 2 'SSA (A^2)' 13640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 79.6900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-04 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2 CrystalClear 'data scaling' '(MSC/RIGAKU)' ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 47 ? ? -36.20 114.75 2 1 THR A 92 ? ? -120.37 -169.82 3 1 HIS A 107 ? ? 55.67 -139.28 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN-ADENINE DINUCLEOTIDE' FAD 3 water HOH #