data_2D28 # _entry.id 2D28 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D28 pdb_00002d28 10.2210/pdb2d28/pdb RCSB RCSB024896 ? ? WWPDB D_1000024896 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2D27 _pdbx_database_related.details 'the same protein in crystal form I4122' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2D28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2005-09-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, Y.' 1 'Shiue, S.-J.' 2 'Huang, C.-W.' 3 'Chang, J.-L.' 4 'Chien, Y.-L.' 5 'Hu, N.-T.' 6 'Chan, N.-L.' 7 # _citation.id primary _citation.title 'Structure and Function of the XpsE N-Terminal Domain, an Essential Component of the Xanthomonas campestris Type II Secretion System' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 42356 _citation.page_last 42363 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16162504 _citation.pdbx_database_id_DOI 10.1074/jbc.M506843200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, Y.' 1 ? primary 'Shiue, S.-J.' 2 ? primary 'Huang, C.-W.' 3 ? primary 'Chang, J.-L.' 4 ? primary 'Chien, Y.-L.' 5 ? primary 'Hu, N.-T.' 6 ? primary 'Chan, N.-L.' 7 ? # _cell.length_a 55.914 _cell.length_b 55.914 _cell.length_c 104.813 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2D28 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 2D28 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'type II secretion ATPase XpsE' 16943.967 1 ? L26V 'N-terminal domain' ? 2 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 3 water nat water 18.015 152 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name XpsE # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)EQRSAETRIVEALLERRRLKDTDLVRARQLQAESG(MSE)GLLALLGRLGLVSERDHAETCAEVLGLPLVDARQL GDTPPE(MSE)LPEVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAIDAVRLATGLPLLLHVGLRSEIDDLIERWY G ; _entity_poly.pdbx_seq_one_letter_code_can ;MEQRSAETRIVEALLERRRLKDTDLVRARQLQAESGMGLLALLGRLGLVSERDHAETCAEVLGLPLVDARQLGDTPPEML PEVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAIDAVRLATGLPLLLHVGLRSEIDDLIERWYG ; _entity_poly.pdbx_strand_id C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLU n 1 3 GLN n 1 4 ARG n 1 5 SER n 1 6 ALA n 1 7 GLU n 1 8 THR n 1 9 ARG n 1 10 ILE n 1 11 VAL n 1 12 GLU n 1 13 ALA n 1 14 LEU n 1 15 LEU n 1 16 GLU n 1 17 ARG n 1 18 ARG n 1 19 ARG n 1 20 LEU n 1 21 LYS n 1 22 ASP n 1 23 THR n 1 24 ASP n 1 25 LEU n 1 26 VAL n 1 27 ARG n 1 28 ALA n 1 29 ARG n 1 30 GLN n 1 31 LEU n 1 32 GLN n 1 33 ALA n 1 34 GLU n 1 35 SER n 1 36 GLY n 1 37 MSE n 1 38 GLY n 1 39 LEU n 1 40 LEU n 1 41 ALA n 1 42 LEU n 1 43 LEU n 1 44 GLY n 1 45 ARG n 1 46 LEU n 1 47 GLY n 1 48 LEU n 1 49 VAL n 1 50 SER n 1 51 GLU n 1 52 ARG n 1 53 ASP n 1 54 HIS n 1 55 ALA n 1 56 GLU n 1 57 THR n 1 58 CYS n 1 59 ALA n 1 60 GLU n 1 61 VAL n 1 62 LEU n 1 63 GLY n 1 64 LEU n 1 65 PRO n 1 66 LEU n 1 67 VAL n 1 68 ASP n 1 69 ALA n 1 70 ARG n 1 71 GLN n 1 72 LEU n 1 73 GLY n 1 74 ASP n 1 75 THR n 1 76 PRO n 1 77 PRO n 1 78 GLU n 1 79 MSE n 1 80 LEU n 1 81 PRO n 1 82 GLU n 1 83 VAL n 1 84 GLN n 1 85 GLY n 1 86 LEU n 1 87 SER n 1 88 LEU n 1 89 ARG n 1 90 PHE n 1 91 LEU n 1 92 LYS n 1 93 GLN n 1 94 PHE n 1 95 HIS n 1 96 LEU n 1 97 CYS n 1 98 PRO n 1 99 VAL n 1 100 GLY n 1 101 GLU n 1 102 ARG n 1 103 ASP n 1 104 GLY n 1 105 ARG n 1 106 LEU n 1 107 ASP n 1 108 LEU n 1 109 TRP n 1 110 ILE n 1 111 ALA n 1 112 ASP n 1 113 PRO n 1 114 TYR n 1 115 ASP n 1 116 ASP n 1 117 TYR n 1 118 ALA n 1 119 ILE n 1 120 ASP n 1 121 ALA n 1 122 VAL n 1 123 ARG n 1 124 LEU n 1 125 ALA n 1 126 THR n 1 127 GLY n 1 128 LEU n 1 129 PRO n 1 130 LEU n 1 131 LEU n 1 132 LEU n 1 133 HIS n 1 134 VAL n 1 135 GLY n 1 136 LEU n 1 137 ARG n 1 138 SER n 1 139 GLU n 1 140 ILE n 1 141 ASP n 1 142 ASP n 1 143 LEU n 1 144 ILE n 1 145 GLU n 1 146 ARG n 1 147 TRP n 1 148 TYR n 1 149 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Xanthomonas _entity_src_gen.pdbx_gene_src_gene xpsE _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xanthomonas campestris' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 339 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET16b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GSPE_XANCP _struct_ref.pdbx_db_accession P31742 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEQRSAETRIVEALLERRRLKDTDLLRARQLQAESGMGLLALLGRLGLVSERDHAETCAEVLGLPLVDARQLGDTPPEML PEVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAIDAVRLATGLPLLLHVGLRSEIDDLIERWYG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D28 _struct_ref_seq.pdbx_strand_id C _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 149 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P31742 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 149 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D28 MSE C 1 ? UNP P31742 MET 1 'modified residue' 1 1 1 2D28 VAL C 26 ? UNP P31742 LEU 26 'engineered mutation' 26 2 1 2D28 MSE C 37 ? UNP P31742 MET 37 'modified residue' 37 3 1 2D28 MSE C 79 ? UNP P31742 MET 79 'modified residue' 79 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D28 _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'magnesium acetate, sodium cacodylate pH 6.5, PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-02-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9537 1.0 2 0.97990 1.0 3 0.97980 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL12B2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9537, 0.97990, 0.97980' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL12B2 # _reflns.entry_id 2D28 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 28.0 _reflns.number_all ? _reflns.number_obs 12460 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.09 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all 1161 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 28.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.550 _refine.ls_number_reflns_obs 11783 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.192 _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.252 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 570 _refine.B_iso_mean 21.385 _refine.aniso_B[1][1] 0.280 _refine.aniso_B[2][2] 0.280 _refine.aniso_B[3][3] -0.560 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.pdbx_overall_ESU_R 0.178 _refine.pdbx_overall_ESU_R_Free 0.174 _refine.overall_SU_ML 0.098 _refine.overall_SU_B 3.280 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2D28 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 12460 _refine.ls_R_factor_obs 0.192 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1136 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 1293 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 28.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1155 0.022 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1122 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1560 2.175 2.000 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2577 1.035 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 141 10.273 5.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 178 0.112 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1269 0.013 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 237 0.015 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 282 0.266 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1308 0.264 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 730 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 98 0.171 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 8 0.379 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 73 0.342 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 28 0.196 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 711 1.428 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1131 2.507 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 444 3.657 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 429 5.550 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 807 _refine_ls_shell.R_factor_R_work 0.15 _refine_ls_shell.R_factor_R_free 0.289 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 856 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2D28 _struct.title 'Structure of the N-terminal domain of XpsE (crystal form P43212)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D28 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'alpha-beta sandwich, PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? ARG A 17 ? SER C 5 ARG C 17 1 ? 13 HELX_P HELX_P2 2 LYS A 21 ? ALA A 28 ? LYS C 21 ALA C 28 1 ? 8 HELX_P HELX_P3 3 GLY A 38 ? LEU A 46 ? GLY C 38 LEU C 46 1 ? 9 HELX_P HELX_P4 4 SER A 50 ? GLY A 63 ? SER C 50 GLY C 63 1 ? 14 HELX_P HELX_P5 5 ASP A 68 ? LEU A 72 ? ASP C 68 LEU C 72 5 ? 5 HELX_P HELX_P6 6 SER A 87 ? HIS A 95 ? SER C 87 HIS C 95 1 ? 9 HELX_P HELX_P7 7 ASP A 115 ? GLY A 127 ? ASP C 115 GLY C 127 1 ? 13 HELX_P HELX_P8 8 LEU A 136 ? TYR A 148 ? LEU C 136 TYR C 148 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 1 C ? ? ? 1_555 A GLU 2 N ? ? C MSE 1 C GLU 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A GLY 36 C ? ? ? 1_555 A MSE 37 N ? ? C GLY 36 C MSE 37 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? A MSE 37 C ? ? ? 1_555 A GLY 38 N ? ? C MSE 37 C GLY 38 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A GLU 78 C ? ? ? 1_555 A MSE 79 N ? ? C GLU 78 C MSE 79 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 96 ? ARG A 102 ? LEU C 96 ARG C 102 A 2 ARG A 105 ? ILE A 110 ? ARG C 105 ILE C 110 A 3 LEU A 130 ? VAL A 134 ? LEU C 130 VAL C 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 99 ? N VAL C 99 O ASP A 107 ? O ASP C 107 A 2 3 N ILE A 110 ? N ILE C 110 O HIS A 133 ? O HIS C 133 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id CAC _struct_site.pdbx_auth_seq_id 200 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE CAC C 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLU A 78 ? GLU C 78 . ? 1_555 ? 2 AC1 8 MSE A 79 ? MSE C 79 . ? 1_555 ? 3 AC1 8 VAL A 83 ? VAL C 83 . ? 1_555 ? 4 AC1 8 PRO A 98 ? PRO C 98 . ? 1_555 ? 5 AC1 8 VAL A 99 ? VAL C 99 . ? 1_555 ? 6 AC1 8 GLY A 100 ? GLY C 100 . ? 1_555 ? 7 AC1 8 GLU A 101 ? GLU C 101 . ? 1_555 ? 8 AC1 8 LEU A 106 ? LEU C 106 . ? 1_555 ? # _atom_sites.entry_id 2D28 _atom_sites.fract_transf_matrix[1][1] 0.01788 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01788 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00954 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE C . n A 1 2 GLU 2 2 2 GLU GLU C . n A 1 3 GLN 3 3 3 GLN GLN C . n A 1 4 ARG 4 4 4 ARG ARG C . n A 1 5 SER 5 5 5 SER SER C . n A 1 6 ALA 6 6 6 ALA ALA C . n A 1 7 GLU 7 7 7 GLU GLU C . n A 1 8 THR 8 8 8 THR THR C . n A 1 9 ARG 9 9 9 ARG ARG C . n A 1 10 ILE 10 10 10 ILE ILE C . n A 1 11 VAL 11 11 11 VAL VAL C . n A 1 12 GLU 12 12 12 GLU GLU C . n A 1 13 ALA 13 13 13 ALA ALA C . n A 1 14 LEU 14 14 14 LEU LEU C . n A 1 15 LEU 15 15 15 LEU LEU C . n A 1 16 GLU 16 16 16 GLU GLU C . n A 1 17 ARG 17 17 17 ARG ARG C . n A 1 18 ARG 18 18 18 ARG ARG C . n A 1 19 ARG 19 19 19 ARG ARG C . n A 1 20 LEU 20 20 20 LEU LEU C . n A 1 21 LYS 21 21 21 LYS LYS C . n A 1 22 ASP 22 22 22 ASP ASP C . n A 1 23 THR 23 23 23 THR THR C . n A 1 24 ASP 24 24 24 ASP ASP C . n A 1 25 LEU 25 25 25 LEU LEU C . n A 1 26 VAL 26 26 26 VAL VAL C . n A 1 27 ARG 27 27 27 ARG ARG C . n A 1 28 ALA 28 28 28 ALA ALA C . n A 1 29 ARG 29 29 29 ARG ARG C . n A 1 30 GLN 30 30 30 GLN GLN C . n A 1 31 LEU 31 31 ? ? ? C . n A 1 32 GLN 32 32 ? ? ? C . n A 1 33 ALA 33 33 ? ? ? C . n A 1 34 GLU 34 34 34 GLU GLU C . n A 1 35 SER 35 35 35 SER SER C . n A 1 36 GLY 36 36 36 GLY GLY C . n A 1 37 MSE 37 37 37 MSE MSE C . n A 1 38 GLY 38 38 38 GLY GLY C . n A 1 39 LEU 39 39 39 LEU LEU C . n A 1 40 LEU 40 40 40 LEU LEU C . n A 1 41 ALA 41 41 41 ALA ALA C . n A 1 42 LEU 42 42 42 LEU LEU C . n A 1 43 LEU 43 43 43 LEU LEU C . n A 1 44 GLY 44 44 44 GLY GLY C . n A 1 45 ARG 45 45 45 ARG ARG C . n A 1 46 LEU 46 46 46 LEU LEU C . n A 1 47 GLY 47 47 47 GLY GLY C . n A 1 48 LEU 48 48 48 LEU LEU C . n A 1 49 VAL 49 49 49 VAL VAL C . n A 1 50 SER 50 50 50 SER SER C . n A 1 51 GLU 51 51 51 GLU GLU C . n A 1 52 ARG 52 52 52 ARG ARG C . n A 1 53 ASP 53 53 53 ASP ASP C . n A 1 54 HIS 54 54 54 HIS HIS C . n A 1 55 ALA 55 55 55 ALA ALA C . n A 1 56 GLU 56 56 56 GLU GLU C . n A 1 57 THR 57 57 57 THR THR C . n A 1 58 CYS 58 58 58 CYS CYS C . n A 1 59 ALA 59 59 59 ALA ALA C . n A 1 60 GLU 60 60 60 GLU GLU C . n A 1 61 VAL 61 61 61 VAL VAL C . n A 1 62 LEU 62 62 62 LEU LEU C . n A 1 63 GLY 63 63 63 GLY GLY C . n A 1 64 LEU 64 64 64 LEU LEU C . n A 1 65 PRO 65 65 65 PRO PRO C . n A 1 66 LEU 66 66 66 LEU LEU C . n A 1 67 VAL 67 67 67 VAL VAL C . n A 1 68 ASP 68 68 68 ASP ASP C . n A 1 69 ALA 69 69 69 ALA ALA C . n A 1 70 ARG 70 70 70 ARG ARG C . n A 1 71 GLN 71 71 71 GLN GLN C . n A 1 72 LEU 72 72 72 LEU LEU C . n A 1 73 GLY 73 73 73 GLY GLY C . n A 1 74 ASP 74 74 74 ASP ASP C . n A 1 75 THR 75 75 75 THR THR C . n A 1 76 PRO 76 76 76 PRO PRO C . n A 1 77 PRO 77 77 77 PRO PRO C . n A 1 78 GLU 78 78 78 GLU GLU C . n A 1 79 MSE 79 79 79 MSE MSE C . n A 1 80 LEU 80 80 ? ? ? C . n A 1 81 PRO 81 81 ? ? ? C . n A 1 82 GLU 82 82 82 GLU GLU C . n A 1 83 VAL 83 83 83 VAL VAL C . n A 1 84 GLN 84 84 84 GLN GLN C . n A 1 85 GLY 85 85 85 GLY GLY C . n A 1 86 LEU 86 86 86 LEU LEU C . n A 1 87 SER 87 87 87 SER SER C . n A 1 88 LEU 88 88 88 LEU LEU C . n A 1 89 ARG 89 89 89 ARG ARG C . n A 1 90 PHE 90 90 90 PHE PHE C . n A 1 91 LEU 91 91 91 LEU LEU C . n A 1 92 LYS 92 92 92 LYS LYS C . n A 1 93 GLN 93 93 93 GLN GLN C . n A 1 94 PHE 94 94 94 PHE PHE C . n A 1 95 HIS 95 95 95 HIS HIS C . n A 1 96 LEU 96 96 96 LEU LEU C . n A 1 97 CYS 97 97 97 CYS CYS C . n A 1 98 PRO 98 98 98 PRO PRO C . n A 1 99 VAL 99 99 99 VAL VAL C . n A 1 100 GLY 100 100 100 GLY GLY C . n A 1 101 GLU 101 101 101 GLU GLU C . n A 1 102 ARG 102 102 102 ARG ARG C . n A 1 103 ASP 103 103 103 ASP ASP C . n A 1 104 GLY 104 104 104 GLY GLY C . n A 1 105 ARG 105 105 105 ARG ARG C . n A 1 106 LEU 106 106 106 LEU LEU C . n A 1 107 ASP 107 107 107 ASP ASP C . n A 1 108 LEU 108 108 108 LEU LEU C . n A 1 109 TRP 109 109 109 TRP TRP C . n A 1 110 ILE 110 110 110 ILE ILE C . n A 1 111 ALA 111 111 111 ALA ALA C . n A 1 112 ASP 112 112 112 ASP ASP C . n A 1 113 PRO 113 113 113 PRO PRO C . n A 1 114 TYR 114 114 114 TYR TYR C . n A 1 115 ASP 115 115 115 ASP ASP C . n A 1 116 ASP 116 116 116 ASP ASP C . n A 1 117 TYR 117 117 117 TYR TYR C . n A 1 118 ALA 118 118 118 ALA ALA C . n A 1 119 ILE 119 119 119 ILE ILE C . n A 1 120 ASP 120 120 120 ASP ASP C . n A 1 121 ALA 121 121 121 ALA ALA C . n A 1 122 VAL 122 122 122 VAL VAL C . n A 1 123 ARG 123 123 123 ARG ARG C . n A 1 124 LEU 124 124 124 LEU LEU C . n A 1 125 ALA 125 125 125 ALA ALA C . n A 1 126 THR 126 126 126 THR THR C . n A 1 127 GLY 127 127 127 GLY GLY C . n A 1 128 LEU 128 128 128 LEU LEU C . n A 1 129 PRO 129 129 129 PRO PRO C . n A 1 130 LEU 130 130 130 LEU LEU C . n A 1 131 LEU 131 131 131 LEU LEU C . n A 1 132 LEU 132 132 132 LEU LEU C . n A 1 133 HIS 133 133 133 HIS HIS C . n A 1 134 VAL 134 134 134 VAL VAL C . n A 1 135 GLY 135 135 135 GLY GLY C . n A 1 136 LEU 136 136 136 LEU LEU C . n A 1 137 ARG 137 137 137 ARG ARG C . n A 1 138 SER 138 138 138 SER SER C . n A 1 139 GLU 139 139 139 GLU GLU C . n A 1 140 ILE 140 140 140 ILE ILE C . n A 1 141 ASP 141 141 141 ASP ASP C . n A 1 142 ASP 142 142 142 ASP ASP C . n A 1 143 LEU 143 143 143 LEU LEU C . n A 1 144 ILE 144 144 144 ILE ILE C . n A 1 145 GLU 145 145 145 GLU GLU C . n A 1 146 ARG 146 146 146 ARG ARG C . n A 1 147 TRP 147 147 147 TRP TRP C . n A 1 148 TYR 148 148 148 TYR TYR C . n A 1 149 GLY 149 149 149 GLY GLY C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CAC 1 200 200 CAC CAC C . C 3 HOH 1 201 9 HOH HOH C . C 3 HOH 2 202 46 HOH HOH C . C 3 HOH 3 203 47 HOH HOH C . C 3 HOH 4 204 48 HOH HOH C . C 3 HOH 5 205 49 HOH HOH C . C 3 HOH 6 206 50 HOH HOH C . C 3 HOH 7 207 51 HOH HOH C . C 3 HOH 8 208 52 HOH HOH C . C 3 HOH 9 209 53 HOH HOH C . C 3 HOH 10 210 54 HOH HOH C . C 3 HOH 11 211 63 HOH HOH C . C 3 HOH 12 212 64 HOH HOH C . C 3 HOH 13 213 65 HOH HOH C . C 3 HOH 14 214 70 HOH HOH C . C 3 HOH 15 215 71 HOH HOH C . C 3 HOH 16 216 72 HOH HOH C . C 3 HOH 17 217 73 HOH HOH C . C 3 HOH 18 218 74 HOH HOH C . C 3 HOH 19 219 76 HOH HOH C . C 3 HOH 20 220 84 HOH HOH C . C 3 HOH 21 221 86 HOH HOH C . C 3 HOH 22 222 88 HOH HOH C . C 3 HOH 23 223 91 HOH HOH C . C 3 HOH 24 224 93 HOH HOH C . C 3 HOH 25 225 95 HOH HOH C . C 3 HOH 26 226 100 HOH HOH C . C 3 HOH 27 227 101 HOH HOH C . C 3 HOH 28 228 108 HOH HOH C . C 3 HOH 29 229 110 HOH HOH C . C 3 HOH 30 230 113 HOH HOH C . C 3 HOH 31 231 114 HOH HOH C . C 3 HOH 32 232 119 HOH HOH C . C 3 HOH 33 233 120 HOH HOH C . C 3 HOH 34 234 121 HOH HOH C . C 3 HOH 35 235 122 HOH HOH C . C 3 HOH 36 236 123 HOH HOH C . C 3 HOH 37 237 126 HOH HOH C . C 3 HOH 38 238 130 HOH HOH C . C 3 HOH 39 239 131 HOH HOH C . C 3 HOH 40 240 137 HOH HOH C . C 3 HOH 41 241 138 HOH HOH C . C 3 HOH 42 242 140 HOH HOH C . C 3 HOH 43 243 141 HOH HOH C . C 3 HOH 44 244 143 HOH HOH C . C 3 HOH 45 245 146 HOH HOH C . C 3 HOH 46 246 151 HOH HOH C . C 3 HOH 47 247 161 HOH HOH C . C 3 HOH 48 248 168 HOH HOH C . C 3 HOH 49 249 170 HOH HOH C . C 3 HOH 50 250 174 HOH HOH C . C 3 HOH 51 251 175 HOH HOH C . C 3 HOH 52 252 179 HOH HOH C . C 3 HOH 53 253 180 HOH HOH C . C 3 HOH 54 254 184 HOH HOH C . C 3 HOH 55 255 186 HOH HOH C . C 3 HOH 56 256 188 HOH HOH C . C 3 HOH 57 257 189 HOH HOH C . C 3 HOH 58 258 191 HOH HOH C . C 3 HOH 59 259 193 HOH HOH C . C 3 HOH 60 260 195 HOH HOH C . C 3 HOH 61 261 197 HOH HOH C . C 3 HOH 62 262 205 HOH HOH C . C 3 HOH 63 263 208 HOH HOH C . C 3 HOH 64 264 211 HOH HOH C . C 3 HOH 65 265 212 HOH HOH C . C 3 HOH 66 266 219 HOH HOH C . C 3 HOH 67 267 220 HOH HOH C . C 3 HOH 68 268 222 HOH HOH C . C 3 HOH 69 269 224 HOH HOH C . C 3 HOH 70 270 225 HOH HOH C . C 3 HOH 71 271 226 HOH HOH C . C 3 HOH 72 272 230 HOH HOH C . C 3 HOH 73 273 233 HOH HOH C . C 3 HOH 74 274 235 HOH HOH C . C 3 HOH 75 275 237 HOH HOH C . C 3 HOH 76 276 241 HOH HOH C . C 3 HOH 77 277 245 HOH HOH C . C 3 HOH 78 278 247 HOH HOH C . C 3 HOH 79 279 250 HOH HOH C . C 3 HOH 80 280 254 HOH HOH C . C 3 HOH 81 281 267 HOH HOH C . C 3 HOH 82 282 268 HOH HOH C . C 3 HOH 83 283 275 HOH HOH C . C 3 HOH 84 284 280 HOH HOH C . C 3 HOH 85 285 286 HOH HOH C . C 3 HOH 86 286 291 HOH HOH C . C 3 HOH 87 287 298 HOH HOH C . C 3 HOH 88 288 305 HOH HOH C . C 3 HOH 89 289 316 HOH HOH C . C 3 HOH 90 290 328 HOH HOH C . C 3 HOH 91 291 333 HOH HOH C . C 3 HOH 92 292 334 HOH HOH C . C 3 HOH 93 293 342 HOH HOH C . C 3 HOH 94 294 343 HOH HOH C . C 3 HOH 95 295 344 HOH HOH C . C 3 HOH 96 296 350 HOH HOH C . C 3 HOH 97 297 352 HOH HOH C . C 3 HOH 98 298 354 HOH HOH C . C 3 HOH 99 299 360 HOH HOH C . C 3 HOH 100 300 364 HOH HOH C . C 3 HOH 101 301 365 HOH HOH C . C 3 HOH 102 302 379 HOH HOH C . C 3 HOH 103 303 380 HOH HOH C . C 3 HOH 104 304 383 HOH HOH C . C 3 HOH 105 305 384 HOH HOH C . C 3 HOH 106 306 386 HOH HOH C . C 3 HOH 107 307 392 HOH HOH C . C 3 HOH 108 308 395 HOH HOH C . C 3 HOH 109 309 398 HOH HOH C . C 3 HOH 110 310 410 HOH HOH C . C 3 HOH 111 311 413 HOH HOH C . C 3 HOH 112 312 414 HOH HOH C . C 3 HOH 113 313 505 HOH HOH C . C 3 HOH 114 314 506 HOH HOH C . C 3 HOH 115 315 509 HOH HOH C . C 3 HOH 116 316 513 HOH HOH C . C 3 HOH 117 317 518 HOH HOH C . C 3 HOH 118 318 521 HOH HOH C . C 3 HOH 119 319 601 HOH HOH C . C 3 HOH 120 320 606 HOH HOH C . C 3 HOH 121 321 608 HOH HOH C . C 3 HOH 122 322 613 HOH HOH C . C 3 HOH 123 323 616 HOH HOH C . C 3 HOH 124 324 620 HOH HOH C . C 3 HOH 125 325 622 HOH HOH C . C 3 HOH 126 326 625 HOH HOH C . C 3 HOH 127 327 631 HOH HOH C . C 3 HOH 128 328 638 HOH HOH C . C 3 HOH 129 329 647 HOH HOH C . C 3 HOH 130 330 648 HOH HOH C . C 3 HOH 131 331 655 HOH HOH C . C 3 HOH 132 332 658 HOH HOH C . C 3 HOH 133 333 664 HOH HOH C . C 3 HOH 134 334 672 HOH HOH C . C 3 HOH 135 335 673 HOH HOH C . C 3 HOH 136 336 678 HOH HOH C . C 3 HOH 137 337 683 HOH HOH C . C 3 HOH 138 338 688 HOH HOH C . C 3 HOH 139 339 690 HOH HOH C . C 3 HOH 140 340 694 HOH HOH C . C 3 HOH 141 341 696 HOH HOH C . C 3 HOH 142 342 702 HOH HOH C . C 3 HOH 143 343 706 HOH HOH C . C 3 HOH 144 344 707 HOH HOH C . C 3 HOH 145 345 710 HOH HOH C . C 3 HOH 146 346 722 HOH HOH C . C 3 HOH 147 347 728 HOH HOH C . C 3 HOH 148 348 729 HOH HOH C . C 3 HOH 149 349 732 HOH HOH C . C 3 HOH 150 350 750 HOH HOH C . C 3 HOH 151 351 751 HOH HOH C . C 3 HOH 152 352 753 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 C MSE 1 ? MET SELENOMETHIONINE 2 A MSE 37 C MSE 37 ? MET SELENOMETHIONINE 3 A MSE 79 C MSE 79 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 3 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 4 SHARP . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C ARG 29 ? ? O C GLN 30 ? ? 1.80 2 1 O C GLU 145 ? ? O C TYR 148 ? ? 2.12 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD C ARG 9 ? ? NE C ARG 9 ? ? CZ C ARG 9 ? ? 135.26 123.60 11.66 1.40 N 2 1 NE C ARG 9 ? ? CZ C ARG 9 ? ? NH1 C ARG 9 ? ? 131.04 120.30 10.74 0.50 N 3 1 NE C ARG 9 ? ? CZ C ARG 9 ? ? NH2 C ARG 9 ? ? 109.65 120.30 -10.65 0.50 N 4 1 N C GLY 36 ? ? CA C GLY 36 ? ? C C GLY 36 ? ? 97.10 113.10 -16.00 2.50 N 5 1 NE C ARG 123 ? ? CZ C ARG 123 ? ? NH1 C ARG 123 ? ? 123.62 120.30 3.32 0.50 N 6 1 NE C ARG 123 ? ? CZ C ARG 123 ? ? NH2 C ARG 123 ? ? 117.15 120.30 -3.15 0.50 N 7 1 NE C ARG 146 ? ? CZ C ARG 146 ? ? NH2 C ARG 146 ? ? 116.94 120.30 -3.36 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG C 29 ? ? 176.18 97.15 2 1 MSE C 37 ? ? 79.70 108.22 3 1 GLU C 78 ? ? 169.70 -71.38 4 1 VAL C 83 ? ? -177.76 118.14 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 MSE C 1 ? ? GLU C 2 ? ? 135.12 2 1 SER C 35 ? ? GLY C 36 ? ? 130.04 3 1 GLY C 36 ? ? MSE C 37 ? ? 146.70 4 1 GLU C 82 ? ? VAL C 83 ? ? 120.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C GLU 34 ? CG ? A GLU 34 CG 2 1 Y 1 C GLU 34 ? CD ? A GLU 34 CD 3 1 Y 1 C GLU 34 ? OE1 ? A GLU 34 OE1 4 1 Y 1 C GLU 34 ? OE2 ? A GLU 34 OE2 5 1 Y 1 C SER 35 ? OG ? A SER 35 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C LEU 31 ? A LEU 31 2 1 Y 1 C GLN 32 ? A GLN 32 3 1 Y 1 C ALA 33 ? A ALA 33 4 1 Y 1 C LEU 80 ? A LEU 80 5 1 Y 1 C PRO 81 ? A PRO 81 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CACODYLATE ION' CAC 3 water HOH #