data_2D97 # _entry.id 2D97 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2D97 RCSB RCSB025142 WWPDB D_1000025142 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D8O VIL-thaumatin unspecified PDB 2D8P HYPER-VIL-thaumatin unspecified PDB 2D8W HYPER-VIL-trypsin unspecified PDB 2D91 HYPER-VIL-lysozyme unspecified PDB 2D98 'VIL(extra KI/I2 added)-xylanase' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D97 _pdbx_database_status.recvd_initial_deposition_date 2005-12-09 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Miyatake, H.' 1 'Hasegawa, T.' 2 'Yamano, A.' 3 # _citation.id primary _citation.title 'New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)' _citation.journal_abbrev 'ACTA CRYSTALLOGR.,SECT.D' _citation.journal_volume 62 _citation.page_first 280 _citation.page_last 289 _citation.year 2006 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16510975 _citation.pdbx_database_id_DOI 10.1107/S0907444905041909 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Miyatake, H.' 1 primary 'Hasegawa, T.' 2 primary 'Yamano, A.' 3 # _cell.entry_id 2D97 _cell.length_a 40.347 _cell.length_b 38.585 _cell.length_c 57.162 _cell.angle_alpha 90.00 _cell.angle_beta 110.31 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2D97 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Endo-1,4-beta-xylanase 2' 21356.820 1 3.2.1.8 ? ? ? 2 water nat water 18.015 111 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Xylanase 2, 1,4- beta-D-xylan xylanohydrolase 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;TIQPGTG(IYR)NNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNS(IYR) LSVYGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATF(TYI)QYWSVRRNHRSSGS VNTANHFNAWAQQGLTLGTMDYQIVAVEG(IYR)FSSGSASITVS ; _entity_poly.pdbx_seq_one_letter_code_can ;TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSR NPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQ QGLTLGTMDYQIVAVEGYFSSGSASITVS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ILE n 1 3 GLN n 1 4 PRO n 1 5 GLY n 1 6 THR n 1 7 GLY n 1 8 IYR n 1 9 ASN n 1 10 ASN n 1 11 GLY n 1 12 TYR n 1 13 PHE n 1 14 TYR n 1 15 SER n 1 16 TYR n 1 17 TRP n 1 18 ASN n 1 19 ASP n 1 20 GLY n 1 21 HIS n 1 22 GLY n 1 23 GLY n 1 24 VAL n 1 25 THR n 1 26 TYR n 1 27 THR n 1 28 ASN n 1 29 GLY n 1 30 PRO n 1 31 GLY n 1 32 GLY n 1 33 GLN n 1 34 PHE n 1 35 SER n 1 36 VAL n 1 37 ASN n 1 38 TRP n 1 39 SER n 1 40 ASN n 1 41 SER n 1 42 GLY n 1 43 ASN n 1 44 PHE n 1 45 VAL n 1 46 GLY n 1 47 GLY n 1 48 LYS n 1 49 GLY n 1 50 TRP n 1 51 GLN n 1 52 PRO n 1 53 GLY n 1 54 THR n 1 55 LYS n 1 56 ASN n 1 57 LYS n 1 58 VAL n 1 59 ILE n 1 60 ASN n 1 61 PHE n 1 62 SER n 1 63 GLY n 1 64 SER n 1 65 TYR n 1 66 ASN n 1 67 PRO n 1 68 ASN n 1 69 GLY n 1 70 ASN n 1 71 SER n 1 72 IYR n 1 73 LEU n 1 74 SER n 1 75 VAL n 1 76 TYR n 1 77 GLY n 1 78 TRP n 1 79 SER n 1 80 ARG n 1 81 ASN n 1 82 PRO n 1 83 LEU n 1 84 ILE n 1 85 GLU n 1 86 TYR n 1 87 TYR n 1 88 ILE n 1 89 VAL n 1 90 GLU n 1 91 ASN n 1 92 PHE n 1 93 GLY n 1 94 THR n 1 95 TYR n 1 96 ASN n 1 97 PRO n 1 98 SER n 1 99 THR n 1 100 GLY n 1 101 ALA n 1 102 THR n 1 103 LYS n 1 104 LEU n 1 105 GLY n 1 106 GLU n 1 107 VAL n 1 108 THR n 1 109 SER n 1 110 ASP n 1 111 GLY n 1 112 SER n 1 113 VAL n 1 114 TYR n 1 115 ASP n 1 116 ILE n 1 117 TYR n 1 118 ARG n 1 119 THR n 1 120 GLN n 1 121 ARG n 1 122 VAL n 1 123 ASN n 1 124 GLN n 1 125 PRO n 1 126 SER n 1 127 ILE n 1 128 ILE n 1 129 GLY n 1 130 THR n 1 131 ALA n 1 132 THR n 1 133 PHE n 1 134 TYI n 1 135 GLN n 1 136 TYR n 1 137 TRP n 1 138 SER n 1 139 VAL n 1 140 ARG n 1 141 ARG n 1 142 ASN n 1 143 HIS n 1 144 ARG n 1 145 SER n 1 146 SER n 1 147 GLY n 1 148 SER n 1 149 VAL n 1 150 ASN n 1 151 THR n 1 152 ALA n 1 153 ASN n 1 154 HIS n 1 155 PHE n 1 156 ASN n 1 157 ALA n 1 158 TRP n 1 159 ALA n 1 160 GLN n 1 161 GLN n 1 162 GLY n 1 163 LEU n 1 164 THR n 1 165 LEU n 1 166 GLY n 1 167 THR n 1 168 MET n 1 169 ASP n 1 170 TYR n 1 171 GLN n 1 172 ILE n 1 173 VAL n 1 174 ALA n 1 175 VAL n 1 176 GLU n 1 177 GLY n 1 178 IYR n 1 179 PHE n 1 180 SER n 1 181 SER n 1 182 GLY n 1 183 SER n 1 184 ALA n 1 185 SER n 1 186 ILE n 1 187 THR n 1 188 VAL n 1 189 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Hypocrea jecorina' _entity_src_nat.pdbx_ncbi_taxonomy_id 51453 _entity_src_nat.genus Hypocrea _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code XYN2_TRIRE _struct_ref.pdbx_db_accession P36217 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSR NPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQ QGLTLGTMDYQIVAVEGYFSSGSASITVS ; _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D97 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 189 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P36217 _struct_ref_seq.db_align_beg 34 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 222 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D97 IYR A 8 ? UNP P36217 TYR 41 'MODIFIED RESIDUE' 9 1 1 2D97 IYR A 72 ? UNP P36217 TYR 105 'MODIFIED RESIDUE' 73 2 1 2D97 TYI A 134 ? UNP P36217 TYR 167 'MODIFIED RESIDUE' 135 3 1 2D97 IYR A 178 ? UNP P36217 TYR 211 'MODIFIED RESIDUE' 179 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IYR 'L-peptide linking' n 3-IODO-TYROSINE ? 'C9 H10 I N O3' 307.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYI 'L-peptide linking' n 3,5-DIIODOTYROSINE ? 'C9 H9 I2 N O3' 432.982 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D97 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_percent_sol 37.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.3 _exptl_crystal_grow.pdbx_details '1.5M ammonium sulfate, 0.1M Na citrate, pH 4.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-08-01 _diffrn_detector.details 'Osmic Cu CMF' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Osmic Cu CMF' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2D97 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 18.98 _reflns.d_resolution_high 2.01 _reflns.number_obs 11242 _reflns.number_all 11332 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 13.5 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.01 _reflns_shell.d_res_low 2.13 _reflns_shell.percent_possible_all 88.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2D97 _refine.ls_number_reflns_obs 11037 _refine.ls_number_reflns_all 11037 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 747262.89 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.98 _refine.ls_d_res_high 2.01 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 529 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 19.4 _refine.aniso_B[1][1] 2.27 _refine.aniso_B[2][2] 1.73 _refine.aniso_B[3][3] -4.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -3.06 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.424075 _refine.solvent_model_param_bsol 41.5216 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2D97 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.12 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.18 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1476 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1587 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 18.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.77 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 1587 _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.percent_reflns_obs 88.8 _refine_ls_shell.R_factor_R_free 0.274 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free 4.9 _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 IYR2.param protein_IYR2.top 'X-RAY DIFFRACTION' 3 water_rep.param IYR2.top 'X-RAY DIFFRACTION' 4 ion.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2D97 _struct.title 'Structure of VIL-xylanase' _struct.pdbx_descriptor 'Endo-1,4-beta-xylanase 2 (E.C.3.2.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D97 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'iodo-tyrosine, VAPORIZING IODINE LABELING(VIL), HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 151 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 161 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 152 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 162 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 7 C ? ? ? 1_555 A IYR 8 N ? ? A GLY 8 A IYR 9 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A IYR 8 C ? ? ? 1_555 A ASN 9 N ? ? A IYR 9 A ASN 10 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A SER 71 C ? ? ? 1_555 A IYR 72 N ? ? A SER 72 A IYR 73 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A IYR 72 C ? ? ? 1_555 A LEU 73 N ? ? A IYR 73 A LEU 74 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A PHE 133 C ? ? ? 1_555 A TYI 134 N ? ? A PHE 134 A TYI 135 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A TYI 134 C ? ? ? 1_555 A GLN 135 N ? ? A TYI 135 A GLN 136 1_555 ? ? ? ? ? ? ? 1.321 ? covale7 covale ? ? A GLY 177 C ? ? ? 1_555 A IYR 178 N ? ? A GLY 178 A IYR 179 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale ? ? A IYR 178 C ? ? ? 1_555 A PHE 179 N ? ? A IYR 179 A PHE 180 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 51 A . ? GLN 52 A PRO 52 A ? PRO 53 A 1 -0.03 2 ASN 81 A . ? ASN 82 A PRO 82 A ? PRO 83 A 1 0.17 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 5 ? ASN A 9 ? GLY A 6 ASN A 10 A 2 TYR A 12 ? ASN A 18 ? TYR A 13 ASN A 19 A 3 ASN A 43 ? TRP A 50 ? ASN A 44 TRP A 51 A 4 THR A 167 ? IYR A 178 ? THR A 168 IYR A 179 A 5 SER A 71 ? ARG A 80 ? SER A 72 ARG A 81 A 6 ILE A 84 ? GLY A 93 ? ILE A 85 GLY A 94 A 7 ALA A 131 ? ARG A 140 ? ALA A 132 ARG A 141 A 8 SER A 112 ? GLN A 124 ? SER A 113 GLN A 125 A 9 THR A 102 ? SER A 109 ? THR A 103 SER A 110 B 1 VAL A 24 ? ASN A 28 ? VAL A 25 ASN A 29 B 2 GLN A 33 ? TRP A 38 ? GLN A 34 TRP A 39 B 3 SER A 181 ? SER A 189 ? SER A 182 SER A 190 B 4 VAL A 58 ? ASN A 68 ? VAL A 59 ASN A 69 B 5 SER A 146 ? ASN A 150 ? SER A 147 ASN A 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 5 ? N GLY A 6 O TYR A 16 ? O TYR A 17 A 2 3 N PHE A 13 ? N PHE A 14 O GLY A 49 ? O GLY A 50 A 3 4 N TRP A 50 ? N TRP A 51 O GLN A 171 ? O GLN A 172 A 4 5 O ILE A 172 ? O ILE A 173 N TYR A 76 ? N TYR A 77 A 5 6 N LEU A 73 ? N LEU A 74 O ASN A 91 ? O ASN A 92 A 6 7 N VAL A 89 ? N VAL A 90 O ARG A 140 ? O ARG A 141 A 7 8 O PHE A 133 ? O PHE A 134 N ARG A 121 ? N ARG A 122 A 8 9 O TYR A 114 ? O TYR A 115 N VAL A 107 ? N VAL A 108 B 1 2 N THR A 27 ? N THR A 28 O SER A 35 ? O SER A 36 B 2 3 N TRP A 38 ? N TRP A 39 O GLY A 182 ? O GLY A 183 B 3 4 O SER A 181 ? O SER A 182 N ASN A 68 ? N ASN A 69 B 4 5 N ILE A 59 ? N ILE A 60 O VAL A 149 ? O VAL A 150 # _database_PDB_matrix.entry_id 2D97 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D97 _atom_sites.fract_transf_matrix[1][1] 0.024785 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009173 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025917 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018654 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 2 2 THR THR A . n A 1 2 ILE 2 3 3 ILE ILE A . n A 1 3 GLN 3 4 4 GLN GLN A . n A 1 4 PRO 4 5 5 PRO PRO A . n A 1 5 GLY 5 6 6 GLY GLY A . n A 1 6 THR 6 7 7 THR THR A . n A 1 7 GLY 7 8 8 GLY GLY A . n A 1 8 IYR 8 9 9 IYR IYR A . n A 1 9 ASN 9 10 10 ASN ASN A . n A 1 10 ASN 10 11 11 ASN ASN A . n A 1 11 GLY 11 12 12 GLY GLY A . n A 1 12 TYR 12 13 13 TYR TYR A . n A 1 13 PHE 13 14 14 PHE PHE A . n A 1 14 TYR 14 15 15 TYR TYR A . n A 1 15 SER 15 16 16 SER SER A . n A 1 16 TYR 16 17 17 TYR TYR A . n A 1 17 TRP 17 18 18 TRP TRP A . n A 1 18 ASN 18 19 19 ASN ASN A . n A 1 19 ASP 19 20 20 ASP ASP A . n A 1 20 GLY 20 21 21 GLY GLY A . n A 1 21 HIS 21 22 22 HIS HIS A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 GLY 23 24 24 GLY GLY A . n A 1 24 VAL 24 25 25 VAL VAL A . n A 1 25 THR 25 26 26 THR THR A . n A 1 26 TYR 26 27 27 TYR TYR A . n A 1 27 THR 27 28 28 THR THR A . n A 1 28 ASN 28 29 29 ASN ASN A . n A 1 29 GLY 29 30 30 GLY GLY A . n A 1 30 PRO 30 31 31 PRO PRO A . n A 1 31 GLY 31 32 32 GLY GLY A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 GLN 33 34 34 GLN GLN A . n A 1 34 PHE 34 35 35 PHE PHE A . n A 1 35 SER 35 36 36 SER SER A . n A 1 36 VAL 36 37 37 VAL VAL A . n A 1 37 ASN 37 38 38 ASN ASN A . n A 1 38 TRP 38 39 39 TRP TRP A . n A 1 39 SER 39 40 40 SER SER A . n A 1 40 ASN 40 41 41 ASN ASN A . n A 1 41 SER 41 42 42 SER SER A . n A 1 42 GLY 42 43 43 GLY GLY A . n A 1 43 ASN 43 44 44 ASN ASN A . n A 1 44 PHE 44 45 45 PHE PHE A . n A 1 45 VAL 45 46 46 VAL VAL A . n A 1 46 GLY 46 47 47 GLY GLY A . n A 1 47 GLY 47 48 48 GLY GLY A . n A 1 48 LYS 48 49 49 LYS LYS A . n A 1 49 GLY 49 50 50 GLY GLY A . n A 1 50 TRP 50 51 51 TRP TRP A . n A 1 51 GLN 51 52 52 GLN GLN A . n A 1 52 PRO 52 53 53 PRO PRO A . n A 1 53 GLY 53 54 54 GLY GLY A . n A 1 54 THR 54 55 55 THR THR A . n A 1 55 LYS 55 56 56 LYS LYS A . n A 1 56 ASN 56 57 57 ASN ASN A . n A 1 57 LYS 57 58 58 LYS LYS A . n A 1 58 VAL 58 59 59 VAL VAL A . n A 1 59 ILE 59 60 60 ILE ILE A . n A 1 60 ASN 60 61 61 ASN ASN A . n A 1 61 PHE 61 62 62 PHE PHE A . n A 1 62 SER 62 63 63 SER SER A . n A 1 63 GLY 63 64 64 GLY GLY A . n A 1 64 SER 64 65 65 SER SER A . n A 1 65 TYR 65 66 66 TYR TYR A . n A 1 66 ASN 66 67 67 ASN ASN A . n A 1 67 PRO 67 68 68 PRO PRO A . n A 1 68 ASN 68 69 69 ASN ASN A . n A 1 69 GLY 69 70 70 GLY GLY A . n A 1 70 ASN 70 71 71 ASN ASN A . n A 1 71 SER 71 72 72 SER SER A . n A 1 72 IYR 72 73 73 IYR IYR A . n A 1 73 LEU 73 74 74 LEU LEU A . n A 1 74 SER 74 75 75 SER SER A . n A 1 75 VAL 75 76 76 VAL VAL A . n A 1 76 TYR 76 77 77 TYR TYR A . n A 1 77 GLY 77 78 78 GLY GLY A . n A 1 78 TRP 78 79 79 TRP TRP A . n A 1 79 SER 79 80 80 SER SER A . n A 1 80 ARG 80 81 81 ARG ARG A . n A 1 81 ASN 81 82 82 ASN ASN A . n A 1 82 PRO 82 83 83 PRO PRO A . n A 1 83 LEU 83 84 84 LEU LEU A . n A 1 84 ILE 84 85 85 ILE ILE A . n A 1 85 GLU 85 86 86 GLU GLU A . n A 1 86 TYR 86 87 87 TYR TYR A . n A 1 87 TYR 87 88 88 TYR TYR A . n A 1 88 ILE 88 89 89 ILE ILE A . n A 1 89 VAL 89 90 90 VAL VAL A . n A 1 90 GLU 90 91 91 GLU GLU A . n A 1 91 ASN 91 92 92 ASN ASN A . n A 1 92 PHE 92 93 93 PHE PHE A . n A 1 93 GLY 93 94 94 GLY GLY A . n A 1 94 THR 94 95 95 THR THR A . n A 1 95 TYR 95 96 96 TYR TYR A . n A 1 96 ASN 96 97 97 ASN ASN A . n A 1 97 PRO 97 98 98 PRO PRO A . n A 1 98 SER 98 99 99 SER SER A . n A 1 99 THR 99 100 100 THR THR A . n A 1 100 GLY 100 101 101 GLY GLY A . n A 1 101 ALA 101 102 102 ALA ALA A . n A 1 102 THR 102 103 103 THR THR A . n A 1 103 LYS 103 104 104 LYS LYS A . n A 1 104 LEU 104 105 105 LEU LEU A . n A 1 105 GLY 105 106 106 GLY GLY A . n A 1 106 GLU 106 107 107 GLU GLU A . n A 1 107 VAL 107 108 108 VAL VAL A . n A 1 108 THR 108 109 109 THR THR A . n A 1 109 SER 109 110 110 SER SER A . n A 1 110 ASP 110 111 111 ASP ASP A . n A 1 111 GLY 111 112 112 GLY GLY A . n A 1 112 SER 112 113 113 SER SER A . n A 1 113 VAL 113 114 114 VAL VAL A . n A 1 114 TYR 114 115 115 TYR TYR A . n A 1 115 ASP 115 116 116 ASP ASP A . n A 1 116 ILE 116 117 117 ILE ILE A . n A 1 117 TYR 117 118 118 TYR TYR A . n A 1 118 ARG 118 119 119 ARG ARG A . n A 1 119 THR 119 120 120 THR THR A . n A 1 120 GLN 120 121 121 GLN GLN A . n A 1 121 ARG 121 122 122 ARG ARG A . n A 1 122 VAL 122 123 123 VAL VAL A . n A 1 123 ASN 123 124 124 ASN ASN A . n A 1 124 GLN 124 125 125 GLN GLN A . n A 1 125 PRO 125 126 126 PRO PRO A . n A 1 126 SER 126 127 127 SER SER A . n A 1 127 ILE 127 128 128 ILE ILE A . n A 1 128 ILE 128 129 129 ILE ILE A . n A 1 129 GLY 129 130 130 GLY GLY A . n A 1 130 THR 130 131 131 THR THR A . n A 1 131 ALA 131 132 132 ALA ALA A . n A 1 132 THR 132 133 133 THR THR A . n A 1 133 PHE 133 134 134 PHE PHE A . n A 1 134 TYI 134 135 135 TYI TYI A . n A 1 135 GLN 135 136 136 GLN GLN A . n A 1 136 TYR 136 137 137 TYR TYR A . n A 1 137 TRP 137 138 138 TRP TRP A . n A 1 138 SER 138 139 139 SER SER A . n A 1 139 VAL 139 140 140 VAL VAL A . n A 1 140 ARG 140 141 141 ARG ARG A . n A 1 141 ARG 141 142 142 ARG ARG A . n A 1 142 ASN 142 143 143 ASN ASN A . n A 1 143 HIS 143 144 144 HIS HIS A . n A 1 144 ARG 144 145 145 ARG ARG A . n A 1 145 SER 145 146 146 SER SER A . n A 1 146 SER 146 147 147 SER SER A . n A 1 147 GLY 147 148 148 GLY GLY A . n A 1 148 SER 148 149 149 SER SER A . n A 1 149 VAL 149 150 150 VAL VAL A . n A 1 150 ASN 150 151 151 ASN ASN A . n A 1 151 THR 151 152 152 THR THR A . n A 1 152 ALA 152 153 153 ALA ALA A . n A 1 153 ASN 153 154 154 ASN ASN A . n A 1 154 HIS 154 155 155 HIS HIS A . n A 1 155 PHE 155 156 156 PHE PHE A . n A 1 156 ASN 156 157 157 ASN ASN A . n A 1 157 ALA 157 158 158 ALA ALA A . n A 1 158 TRP 158 159 159 TRP TRP A . n A 1 159 ALA 159 160 160 ALA ALA A . n A 1 160 GLN 160 161 161 GLN GLN A . n A 1 161 GLN 161 162 162 GLN GLN A . n A 1 162 GLY 162 163 163 GLY GLY A . n A 1 163 LEU 163 164 164 LEU LEU A . n A 1 164 THR 164 165 165 THR THR A . n A 1 165 LEU 165 166 166 LEU LEU A . n A 1 166 GLY 166 167 167 GLY GLY A . n A 1 167 THR 167 168 168 THR THR A . n A 1 168 MET 168 169 169 MET MET A . n A 1 169 ASP 169 170 170 ASP ASP A . n A 1 170 TYR 170 171 171 TYR TYR A . n A 1 171 GLN 171 172 172 GLN GLN A . n A 1 172 ILE 172 173 173 ILE ILE A . n A 1 173 VAL 173 174 174 VAL VAL A . n A 1 174 ALA 174 175 175 ALA ALA A . n A 1 175 VAL 175 176 176 VAL VAL A . n A 1 176 GLU 176 177 177 GLU GLU A . n A 1 177 GLY 177 178 178 GLY GLY A . n A 1 178 IYR 178 179 179 IYR IYR A . n A 1 179 PHE 179 180 180 PHE PHE A . n A 1 180 SER 180 181 181 SER SER A . n A 1 181 SER 181 182 182 SER SER A . n A 1 182 GLY 182 183 183 GLY GLY A . n A 1 183 SER 183 184 184 SER SER A . n A 1 184 ALA 184 185 185 ALA ALA A . n A 1 185 SER 185 186 186 SER SER A . n A 1 186 ILE 186 187 187 ILE ILE A . n A 1 187 THR 187 188 188 THR THR A . n A 1 188 VAL 188 189 189 VAL VAL A . n A 1 189 SER 189 190 190 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 191 1 HOH HOH A . B 2 HOH 2 192 2 HOH HOH A . B 2 HOH 3 193 3 HOH HOH A . B 2 HOH 4 194 4 HOH HOH A . B 2 HOH 5 195 5 HOH HOH A . B 2 HOH 6 196 6 HOH HOH A . B 2 HOH 7 197 7 HOH HOH A . B 2 HOH 8 198 8 HOH HOH A . B 2 HOH 9 199 9 HOH HOH A . B 2 HOH 10 200 10 HOH HOH A . B 2 HOH 11 201 11 HOH HOH A . B 2 HOH 12 202 12 HOH HOH A . B 2 HOH 13 203 13 HOH HOH A . B 2 HOH 14 204 14 HOH HOH A . B 2 HOH 15 205 15 HOH HOH A . B 2 HOH 16 206 16 HOH HOH A . B 2 HOH 17 207 17 HOH HOH A . B 2 HOH 18 208 18 HOH HOH A . B 2 HOH 19 209 19 HOH HOH A . B 2 HOH 20 210 20 HOH HOH A . B 2 HOH 21 211 21 HOH HOH A . B 2 HOH 22 212 22 HOH HOH A . B 2 HOH 23 213 23 HOH HOH A . B 2 HOH 24 214 24 HOH HOH A . B 2 HOH 25 215 25 HOH HOH A . B 2 HOH 26 216 26 HOH HOH A . B 2 HOH 27 217 27 HOH HOH A . B 2 HOH 28 218 28 HOH HOH A . B 2 HOH 29 219 29 HOH HOH A . B 2 HOH 30 220 30 HOH HOH A . B 2 HOH 31 221 31 HOH HOH A . B 2 HOH 32 222 32 HOH HOH A . B 2 HOH 33 223 33 HOH HOH A . B 2 HOH 34 224 34 HOH HOH A . B 2 HOH 35 225 35 HOH HOH A . B 2 HOH 36 226 36 HOH HOH A . B 2 HOH 37 227 37 HOH HOH A . B 2 HOH 38 228 38 HOH HOH A . B 2 HOH 39 229 39 HOH HOH A . B 2 HOH 40 230 40 HOH HOH A . B 2 HOH 41 231 41 HOH HOH A . B 2 HOH 42 232 42 HOH HOH A . B 2 HOH 43 233 43 HOH HOH A . B 2 HOH 44 234 44 HOH HOH A . B 2 HOH 45 235 45 HOH HOH A . B 2 HOH 46 236 46 HOH HOH A . B 2 HOH 47 237 47 HOH HOH A . B 2 HOH 48 238 48 HOH HOH A . B 2 HOH 49 239 49 HOH HOH A . B 2 HOH 50 240 50 HOH HOH A . B 2 HOH 51 241 51 HOH HOH A . B 2 HOH 52 242 52 HOH HOH A . B 2 HOH 53 243 53 HOH HOH A . B 2 HOH 54 244 54 HOH HOH A . B 2 HOH 55 245 55 HOH HOH A . B 2 HOH 56 246 56 HOH HOH A . B 2 HOH 57 247 57 HOH HOH A . B 2 HOH 58 248 58 HOH HOH A . B 2 HOH 59 249 59 HOH HOH A . B 2 HOH 60 250 60 HOH HOH A . B 2 HOH 61 251 61 HOH HOH A . B 2 HOH 62 252 62 HOH HOH A . B 2 HOH 63 253 63 HOH HOH A . B 2 HOH 64 254 64 HOH HOH A . B 2 HOH 65 255 65 HOH HOH A . B 2 HOH 66 256 66 HOH HOH A . B 2 HOH 67 257 67 HOH HOH A . B 2 HOH 68 258 68 HOH HOH A . B 2 HOH 69 259 69 HOH HOH A . B 2 HOH 70 260 70 HOH HOH A . B 2 HOH 71 261 71 HOH HOH A . B 2 HOH 72 262 72 HOH HOH A . B 2 HOH 73 263 73 HOH HOH A . B 2 HOH 74 264 74 HOH HOH A . B 2 HOH 75 265 75 HOH HOH A . B 2 HOH 76 266 76 HOH HOH A . B 2 HOH 77 267 77 HOH HOH A . B 2 HOH 78 268 78 HOH HOH A . B 2 HOH 79 269 79 HOH HOH A . B 2 HOH 80 270 80 HOH HOH A . B 2 HOH 81 271 81 HOH HOH A . B 2 HOH 82 272 82 HOH HOH A . B 2 HOH 83 273 83 HOH HOH A . B 2 HOH 84 274 84 HOH HOH A . B 2 HOH 85 275 85 HOH HOH A . B 2 HOH 86 276 86 HOH HOH A . B 2 HOH 87 277 87 HOH HOH A . B 2 HOH 88 278 88 HOH HOH A . B 2 HOH 89 279 89 HOH HOH A . B 2 HOH 90 280 90 HOH HOH A . B 2 HOH 91 281 91 HOH HOH A . B 2 HOH 92 282 92 HOH HOH A . B 2 HOH 93 283 93 HOH HOH A . B 2 HOH 94 284 94 HOH HOH A . B 2 HOH 95 285 95 HOH HOH A . B 2 HOH 96 286 96 HOH HOH A . B 2 HOH 97 287 97 HOH HOH A . B 2 HOH 98 288 98 HOH HOH A . B 2 HOH 99 289 99 HOH HOH A . B 2 HOH 100 290 100 HOH HOH A . B 2 HOH 101 291 101 HOH HOH A . B 2 HOH 102 292 102 HOH HOH A . B 2 HOH 103 293 103 HOH HOH A . B 2 HOH 104 294 104 HOH HOH A . B 2 HOH 105 295 105 HOH HOH A . B 2 HOH 106 296 106 HOH HOH A . B 2 HOH 107 297 107 HOH HOH A . B 2 HOH 108 298 108 HOH HOH A . B 2 HOH 109 299 109 HOH HOH A . B 2 HOH 110 300 110 HOH HOH A . B 2 HOH 111 301 111 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A IYR 8 A IYR 9 ? TYR 3-IODO-TYROSINE 2 A IYR 72 A IYR 73 ? TYR 3-IODO-TYROSINE 3 A TYI 134 A TYI 135 ? TYR 3,5-DIIODOTYROSINE 4 A IYR 178 A IYR 179 ? TYR 3-IODO-TYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 82 ? ? 41.99 72.57 2 1 THR A 95 ? ? 64.09 -44.27 3 1 ASP A 111 ? ? 39.15 53.60 4 1 ASP A 170 ? ? -107.45 -143.86 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #