data_2DKW # _entry.id 2DKW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DKW pdb_00002dkw 10.2210/pdb2dkw/pdb RCSB RCSB025536 ? ? WWPDB D_1000025536 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002101214.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DKW _pdbx_database_status.recvd_initial_deposition_date 2006-04-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sano, R.' 1 'Hayashi, F.' 2 'Kurosaki, C.' 3 'Yoshida, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the bromodomain of human protein KIAA1240' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sano, R.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Kurosaki, C.' 3 ? primary 'Yoshida, M.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'hypothetical protein KIAA1240' _entity.formula_weight 14706.722 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment Bromodomain _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGNTLRELRLFLRDVTKRLATDKRFNIFSKPVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNAL EYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGNTLRELRLFLRDVTKRLATDKRFNIFSKPVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNAL EYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002101214.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASN n 1 9 THR n 1 10 LEU n 1 11 ARG n 1 12 GLU n 1 13 LEU n 1 14 ARG n 1 15 LEU n 1 16 PHE n 1 17 LEU n 1 18 ARG n 1 19 ASP n 1 20 VAL n 1 21 THR n 1 22 LYS n 1 23 ARG n 1 24 LEU n 1 25 ALA n 1 26 THR n 1 27 ASP n 1 28 LYS n 1 29 ARG n 1 30 PHE n 1 31 ASN n 1 32 ILE n 1 33 PHE n 1 34 SER n 1 35 LYS n 1 36 PRO n 1 37 VAL n 1 38 SER n 1 39 ASP n 1 40 TYR n 1 41 LEU n 1 42 GLU n 1 43 VAL n 1 44 ILE n 1 45 LYS n 1 46 GLU n 1 47 PRO n 1 48 MET n 1 49 ASP n 1 50 LEU n 1 51 SER n 1 52 THR n 1 53 VAL n 1 54 ILE n 1 55 THR n 1 56 LYS n 1 57 ILE n 1 58 ASP n 1 59 LYS n 1 60 HIS n 1 61 ASN n 1 62 TYR n 1 63 LEU n 1 64 THR n 1 65 ALA n 1 66 LYS n 1 67 ASP n 1 68 PHE n 1 69 LEU n 1 70 LYS n 1 71 ASP n 1 72 ILE n 1 73 ASP n 1 74 LEU n 1 75 ILE n 1 76 CYS n 1 77 SER n 1 78 ASN n 1 79 ALA n 1 80 LEU n 1 81 GLU n 1 82 TYR n 1 83 ASN n 1 84 PRO n 1 85 ASP n 1 86 LYS n 1 87 ASP n 1 88 PRO n 1 89 GLY n 1 90 ASP n 1 91 LYS n 1 92 ILE n 1 93 ILE n 1 94 ARG n 1 95 HIS n 1 96 ARG n 1 97 ALA n 1 98 CYS n 1 99 THR n 1 100 LEU n 1 101 LYS n 1 102 ASP n 1 103 THR n 1 104 ALA n 1 105 HIS n 1 106 ALA n 1 107 ILE n 1 108 ILE n 1 109 ALA n 1 110 ALA n 1 111 GLU n 1 112 LEU n 1 113 ASP n 1 114 PRO n 1 115 GLU n 1 116 PHE n 1 117 ASN n 1 118 LYS n 1 119 LEU n 1 120 CYS n 1 121 GLU n 1 122 GLU n 1 123 ILE n 1 124 LYS n 1 125 GLU n 1 126 SER n 1 127 GLY n 1 128 PRO n 1 129 SER n 1 130 SER n 1 131 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene KIAA1240 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050627-27 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code K1240_HUMAN _struct_ref.pdbx_db_accession Q9ULI0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 238 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DKW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ULI0 _struct_ref_seq.db_align_beg 238 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 355 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DKW GLY A 1 ? UNP Q9ULI0 ? ? 'cloning artifact' 1 1 1 2DKW SER A 2 ? UNP Q9ULI0 ? ? 'cloning artifact' 2 2 1 2DKW SER A 3 ? UNP Q9ULI0 ? ? 'cloning artifact' 3 3 1 2DKW GLY A 4 ? UNP Q9ULI0 ? ? 'cloning artifact' 4 4 1 2DKW SER A 5 ? UNP Q9ULI0 ? ? 'cloning artifact' 5 5 1 2DKW SER A 6 ? UNP Q9ULI0 ? ? 'cloning artifact' 6 6 1 2DKW GLY A 7 ? UNP Q9ULI0 ? ? 'cloning artifact' 7 7 1 2DKW SER A 126 ? UNP Q9ULI0 ? ? 'cloning artifact' 126 8 1 2DKW GLY A 127 ? UNP Q9ULI0 ? ? 'cloning artifact' 127 9 1 2DKW PRO A 128 ? UNP Q9ULI0 ? ? 'cloning artifact' 128 10 1 2DKW SER A 129 ? UNP Q9ULI0 ? ? 'cloning artifact' 129 11 1 2DKW SER A 130 ? UNP Q9ULI0 ? ? 'cloning artifact' 130 12 1 2DKW GLY A 131 ? UNP Q9ULI0 ? ? 'cloning artifact' 131 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.15mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DKW _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DKW _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DKW _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9742 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DKW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DKW _struct.title 'Solution structure of the bromodomain of human protein KIAA1240' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DKW _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text ;bromodomain-like, FIVE-HELIX, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, GENE REGULATION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 7 ? ASP A 27 ? GLY A 7 ASP A 27 1 ? 21 HELX_P HELX_P2 2 LYS A 28 ? ASN A 31 ? LYS A 28 ASN A 31 5 ? 4 HELX_P HELX_P3 3 ASP A 49 ? LYS A 59 ? ASP A 49 LYS A 59 1 ? 11 HELX_P HELX_P4 4 ALA A 65 ? TYR A 82 ? ALA A 65 TYR A 82 1 ? 18 HELX_P HELX_P5 5 GLY A 89 ? LEU A 112 ? GLY A 89 LEU A 112 1 ? 24 HELX_P HELX_P6 6 PHE A 116 ? GLU A 125 ? PHE A 116 GLU A 125 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DKW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DKW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 CYS 120 120 120 CYS CYS A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 PRO 128 128 128 PRO PRO A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLY 131 131 131 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -44.28 109.52 2 1 PHE A 16 ? ? -50.37 -71.49 3 1 PHE A 30 ? ? -108.60 44.01 4 1 GLU A 42 ? ? -97.46 32.49 5 1 LEU A 112 ? ? -44.21 104.30 6 1 SER A 129 ? ? -35.78 136.60 7 2 SER A 2 ? ? -38.43 144.94 8 2 SER A 3 ? ? -173.16 142.58 9 2 SER A 6 ? ? -174.16 -178.14 10 2 PHE A 16 ? ? -57.70 -74.32 11 2 LYS A 28 ? ? -76.38 47.96 12 2 ARG A 29 ? ? -124.69 -51.42 13 2 PHE A 30 ? ? -109.56 40.53 14 2 PRO A 36 ? ? -69.75 81.43 15 2 SER A 38 ? ? -51.38 -175.73 16 2 GLU A 46 ? ? -112.56 74.17 17 2 LEU A 50 ? ? -38.56 -28.13 18 2 LYS A 59 ? ? -83.73 35.63 19 2 HIS A 60 ? ? 34.57 40.87 20 2 LYS A 70 ? ? -36.99 -37.39 21 2 ASN A 83 ? ? -32.90 96.22 22 2 LEU A 112 ? ? -39.79 120.05 23 2 SER A 130 ? ? -130.22 -52.74 24 3 SER A 3 ? ? -69.94 89.32 25 3 SER A 5 ? ? -172.12 145.16 26 3 SER A 6 ? ? -104.37 50.25 27 3 PRO A 36 ? ? -69.74 80.21 28 3 GLU A 46 ? ? -112.32 78.41 29 3 SER A 51 ? ? -56.61 -73.86 30 3 ASN A 61 ? ? -93.45 -60.14 31 3 PRO A 84 ? ? -69.71 -164.77 32 3 ARG A 94 ? ? -38.14 -37.30 33 3 CYS A 98 ? ? -37.68 -39.09 34 4 PHE A 16 ? ? -51.55 -74.90 35 4 ASP A 19 ? ? -36.10 -39.89 36 4 VAL A 20 ? ? -58.74 -71.05 37 4 PRO A 36 ? ? -69.80 100.00 38 4 VAL A 37 ? ? -85.96 39.01 39 4 HIS A 60 ? ? 34.78 48.50 40 4 ILE A 93 ? ? -44.25 -73.06 41 4 LEU A 119 ? ? -94.95 -61.15 42 4 PRO A 128 ? ? -69.75 87.52 43 5 SER A 2 ? ? -85.73 41.15 44 5 SER A 5 ? ? -34.90 127.76 45 5 GLU A 42 ? ? -79.48 42.39 46 5 GLU A 46 ? ? -112.17 74.27 47 5 ALA A 79 ? ? -67.76 -74.14 48 5 PRO A 84 ? ? -69.76 -175.92 49 5 LYS A 86 ? ? -104.41 70.27 50 5 GLU A 111 ? ? -56.04 -70.03 51 5 LEU A 112 ? ? -37.43 152.06 52 6 LYS A 59 ? ? -84.85 31.56 53 6 HIS A 60 ? ? 36.97 41.58 54 6 TYR A 82 ? ? -89.22 32.54 55 6 LEU A 100 ? ? -34.83 -39.22 56 6 GLU A 111 ? ? -87.04 -73.14 57 6 LEU A 112 ? ? -39.73 125.39 58 7 PRO A 36 ? ? -69.81 98.78 59 7 GLU A 46 ? ? -111.29 71.35 60 7 LYS A 101 ? ? -40.76 -70.54 61 7 GLU A 111 ? ? -71.71 -73.79 62 7 SER A 130 ? ? -174.80 137.55 63 8 SER A 6 ? ? -50.60 172.60 64 8 ASP A 39 ? ? -106.18 -71.33 65 8 LEU A 41 ? ? -35.82 -39.83 66 8 GLU A 46 ? ? -115.23 64.98 67 8 ALA A 79 ? ? -71.78 -72.82 68 8 ASN A 83 ? ? -170.83 139.36 69 8 ASP A 85 ? ? -130.65 -39.27 70 8 THR A 103 ? ? -47.75 -70.12 71 8 GLU A 111 ? ? -56.46 -71.59 72 8 LEU A 112 ? ? -36.57 155.03 73 8 LEU A 119 ? ? -83.79 -74.16 74 9 PRO A 36 ? ? -69.72 82.35 75 9 SER A 38 ? ? -56.87 -176.49 76 9 ASN A 83 ? ? -174.86 133.99 77 9 ASP A 85 ? ? 34.08 47.11 78 9 LYS A 86 ? ? -128.79 -53.94 79 9 LEU A 112 ? ? -41.32 163.55 80 10 PHE A 30 ? ? -103.47 46.45 81 10 ASP A 39 ? ? 74.99 43.78 82 10 LYS A 59 ? ? -85.27 30.56 83 10 HIS A 60 ? ? 38.16 45.57 84 10 LEU A 80 ? ? -36.90 -31.25 85 10 ASP A 85 ? ? -83.97 35.86 86 10 ARG A 96 ? ? -37.10 -37.62 87 10 LEU A 112 ? ? -48.55 157.44 88 10 PRO A 114 ? ? -69.73 1.90 89 10 PRO A 128 ? ? -69.79 0.08 90 10 SER A 129 ? ? -35.56 104.45 91 11 SER A 6 ? ? -52.01 -179.61 92 11 PHE A 16 ? ? -40.54 -73.54 93 11 ARG A 23 ? ? -35.51 -38.83 94 11 THR A 26 ? ? -91.71 41.52 95 11 MET A 48 ? ? -171.65 123.50 96 11 SER A 51 ? ? -49.63 -70.29 97 11 LYS A 59 ? ? -87.70 37.49 98 11 HIS A 60 ? ? 35.81 43.20 99 11 PRO A 114 ? ? -69.77 0.81 100 12 SER A 5 ? ? -133.46 -43.87 101 12 THR A 9 ? ? -39.27 -26.82 102 12 VAL A 37 ? ? -81.16 42.11 103 12 LYS A 59 ? ? -89.92 31.38 104 12 HIS A 60 ? ? 38.90 50.27 105 12 LEU A 80 ? ? -39.04 -26.93 106 12 ASN A 83 ? ? -35.06 142.86 107 12 LEU A 112 ? ? -44.50 155.40 108 13 SER A 6 ? ? -92.17 37.55 109 13 ASP A 39 ? ? -114.04 -72.13 110 13 LEU A 41 ? ? -37.56 91.78 111 13 GLU A 42 ? ? 30.77 38.50 112 13 VAL A 43 ? ? -37.27 -39.33 113 13 LEU A 80 ? ? -114.54 -74.73 114 13 LYS A 86 ? ? -91.38 33.09 115 13 ILE A 92 ? ? -70.95 -72.68 116 13 GLU A 111 ? ? -100.68 -66.09 117 13 SER A 130 ? ? -97.72 35.03 118 14 SER A 6 ? ? 35.74 38.38 119 14 PHE A 16 ? ? -55.99 -73.79 120 14 THR A 26 ? ? -108.27 42.37 121 14 VAL A 37 ? ? -90.24 45.36 122 14 GLU A 42 ? ? 35.58 34.28 123 14 LEU A 80 ? ? -106.38 -61.65 124 14 PRO A 88 ? ? -69.72 91.77 125 14 GLU A 111 ? ? -59.15 -73.25 126 14 LEU A 112 ? ? -39.53 157.92 127 15 SER A 6 ? ? -55.74 91.92 128 15 ALA A 25 ? ? -53.70 -70.35 129 15 PRO A 36 ? ? -69.76 99.42 130 15 VAL A 43 ? ? -38.28 -27.32 131 15 LYS A 59 ? ? -85.22 33.52 132 15 HIS A 60 ? ? 34.64 42.45 133 15 SER A 126 ? ? -162.56 113.89 134 15 SER A 130 ? ? -35.68 140.48 135 16 SER A 5 ? ? -69.35 90.36 136 16 PHE A 16 ? ? -49.45 -73.04 137 16 VAL A 20 ? ? -53.20 -70.71 138 16 ASP A 27 ? ? -57.91 108.65 139 16 PHE A 30 ? ? -107.86 44.07 140 16 SER A 34 ? ? -38.38 -28.69 141 16 ASP A 39 ? ? -94.96 -66.11 142 16 SER A 51 ? ? -64.78 -70.71 143 16 THR A 52 ? ? -39.19 -32.35 144 16 TYR A 82 ? ? -90.36 51.94 145 16 ASP A 85 ? ? -99.56 46.06 146 16 ILE A 93 ? ? -46.87 -74.65 147 16 GLU A 111 ? ? -68.99 -70.96 148 16 LEU A 112 ? ? -36.78 150.75 149 17 SER A 5 ? ? -94.51 37.27 150 17 ASP A 27 ? ? -49.27 157.53 151 17 PRO A 36 ? ? -69.76 93.09 152 17 GLU A 42 ? ? 38.32 32.35 153 17 GLU A 46 ? ? -114.25 79.57 154 17 LYS A 59 ? ? -83.05 38.43 155 17 HIS A 60 ? ? 34.71 48.67 156 17 TYR A 82 ? ? -98.50 44.48 157 18 LEU A 17 ? ? -64.69 -73.40 158 18 SER A 34 ? ? -39.87 -35.69 159 18 VAL A 37 ? ? -90.88 49.38 160 18 LYS A 86 ? ? -125.98 -52.65 161 18 LEU A 112 ? ? -39.75 152.44 162 18 PRO A 114 ? ? -69.74 0.70 163 18 PRO A 128 ? ? -69.76 94.37 164 18 SER A 129 ? ? -171.46 130.98 165 19 SER A 34 ? ? -34.11 -39.28 166 19 VAL A 37 ? ? -79.09 45.80 167 19 LYS A 59 ? ? -95.67 31.47 168 19 HIS A 60 ? ? 37.73 38.31 169 19 ASN A 78 ? ? -35.81 -36.43 170 19 ALA A 79 ? ? -62.29 -74.65 171 19 ASN A 83 ? ? -173.97 117.81 172 19 HIS A 95 ? ? -101.85 -65.77 173 19 ARG A 96 ? ? -37.93 -28.92 174 19 PRO A 128 ? ? -69.77 96.19 175 19 SER A 130 ? ? -99.68 42.68 176 20 SER A 6 ? ? -89.03 47.75 177 20 PHE A 30 ? ? -116.82 51.48 178 20 VAL A 43 ? ? -34.96 -31.65 179 20 LYS A 59 ? ? -83.53 37.22 180 20 HIS A 60 ? ? 34.54 48.15 181 20 LYS A 86 ? ? 36.24 44.93 182 20 ILE A 93 ? ? -41.34 -73.85 #