data_2DNA # _entry.id 2DNA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNA pdb_00002dna 10.2210/pdb2dna/pdb RCSB RCSB025616 ? ? WWPDB D_1000025616 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008001321.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNA _pdbx_database_status.recvd_initial_deposition_date 2006-04-25 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ruhul Momen, A.Z.M.' 1 'Hirota, H.' 2 'Hayashi, F.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution Structure of RSGI RUH-056, a UBA domain from mouse cDNA' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ruhul Momen, A.Z.M.' 1 ? primary 'Hirota, H.' 2 ? primary 'Hayashi, F.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'unnamed protein product' _entity.formula_weight 6903.549 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'C-terminal of Dsk2 protein, residues 8-61' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'UBA Domain, Ubiquitin-associated domain' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGPSHSLQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGPSHSLQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008001321.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 SER n 1 10 HIS n 1 11 SER n 1 12 LEU n 1 13 GLN n 1 14 ALA n 1 15 PRO n 1 16 GLU n 1 17 VAL n 1 18 ARG n 1 19 PHE n 1 20 SER n 1 21 LYS n 1 22 GLU n 1 23 MET n 1 24 GLU n 1 25 CYS n 1 26 LEU n 1 27 GLN n 1 28 ALA n 1 29 MET n 1 30 GLY n 1 31 PHE n 1 32 VAL n 1 33 ASN n 1 34 TYR n 1 35 ASN n 1 36 ALA n 1 37 ASN n 1 38 LEU n 1 39 GLN n 1 40 ALA n 1 41 LEU n 1 42 ILE n 1 43 ALA n 1 44 THR n 1 45 ASP n 1 46 GLY n 1 47 ASP n 1 48 THR n 1 49 ASN n 1 50 ALA n 1 51 ALA n 1 52 ILE n 1 53 TYR n 1 54 LYS n 1 55 LEU n 1 56 LYS n 1 57 SER n 1 58 SER n 1 59 GLN n 1 60 GLY n 1 61 PHE n 1 62 SER n 1 63 GLY n 1 64 PRO n 1 65 SER n 1 66 SER n 1 67 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050425-16 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q14DR8_MOUSE _struct_ref.pdbx_db_accession Q14DR8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 556 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 61 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14DR8 _struct_ref_seq.db_align_beg 556 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 609 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 61 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNA GLY A 1 ? UNP Q14DR8 ? ? 'cloning artifact' 1 1 1 2DNA SER A 2 ? UNP Q14DR8 ? ? 'cloning artifact' 2 2 1 2DNA SER A 3 ? UNP Q14DR8 ? ? 'cloning artifact' 3 3 1 2DNA GLY A 4 ? UNP Q14DR8 ? ? 'cloning artifact' 4 4 1 2DNA SER A 5 ? UNP Q14DR8 ? ? 'cloning artifact' 5 5 1 2DNA SER A 6 ? UNP Q14DR8 ? ? 'cloning artifact' 6 6 1 2DNA GLY A 7 ? UNP Q14DR8 ? ? 'cloning artifact' 7 7 1 2DNA SER A 62 ? UNP Q14DR8 ? ? 'cloning artifact' 62 8 1 2DNA GLY A 63 ? UNP Q14DR8 ? ? 'cloning artifact' 63 9 1 2DNA PRO A 64 ? UNP Q14DR8 ? ? 'cloning artifact' 64 10 1 2DNA SER A 65 ? UNP Q14DR8 ? ? 'cloning artifact' 65 11 1 2DNA SER A 66 ? UNP Q14DR8 ? ? 'cloning artifact' 66 12 1 2DNA GLY A 67 ? UNP Q14DR8 ? ? 'cloning artifact' 67 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure Ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '120mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.03mM domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O, 90% H2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNA _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNA _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNA _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1c Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 processing NMRView 5.04 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'data analysis' CYANA 1.0.7 'Guntert, P.' 5 refinement CYANA 1.0.7 'Guntert, P.' 6 # _exptl.entry_id 2DNA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNA _struct.title 'Solution Structure of RSGI RUH-056, a UBA domain from mouse cDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNA _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Ubiquitin associated domain, Dsk2 protein, Proteasome, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 14 ? PHE A 19 ? ALA A 14 PHE A 19 1 ? 6 HELX_P HELX_P2 2 PHE A 19 ? GLY A 30 ? PHE A 19 GLY A 30 1 ? 12 HELX_P HELX_P3 3 ASN A 33 ? THR A 44 ? ASN A 33 THR A 44 1 ? 12 HELX_P HELX_P4 4 ASP A 47 ? SER A 58 ? ASP A 47 SER A 58 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DNA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLY 67 67 67 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ASN 37 ? ? H A LEU 41 ? ? 1.56 2 1 O A THR 48 ? ? H A ILE 52 ? ? 1.58 3 2 O A THR 48 ? ? H A ILE 52 ? ? 1.54 4 2 O A TYR 34 ? ? H A LEU 38 ? ? 1.58 5 3 O A THR 48 ? ? H A ILE 52 ? ? 1.54 6 3 O A TYR 34 ? ? H A LEU 38 ? ? 1.54 7 3 O A VAL 17 ? ? HG A SER 20 ? ? 1.56 8 3 O A ASN 37 ? ? H A LEU 41 ? ? 1.59 9 4 O A THR 48 ? ? H A ILE 52 ? ? 1.51 10 4 O A ALA 50 ? ? H A LYS 54 ? ? 1.57 11 5 O A THR 48 ? ? H A ILE 52 ? ? 1.51 12 6 O A THR 48 ? ? H A ILE 52 ? ? 1.53 13 6 O A ASP 47 ? ? H A ALA 51 ? ? 1.55 14 7 O A THR 48 ? ? H A ILE 52 ? ? 1.51 15 7 O A TYR 34 ? ? H A LEU 38 ? ? 1.58 16 7 O A ALA 50 ? ? H A LYS 54 ? ? 1.59 17 8 O A THR 48 ? ? H A ILE 52 ? ? 1.51 18 9 O A ALA 36 ? ? H A ALA 40 ? ? 1.58 19 9 O A THR 48 ? ? H A ILE 52 ? ? 1.59 20 9 O A ASN 37 ? ? H A LEU 41 ? ? 1.59 21 10 O A ASN 37 ? ? H A LEU 41 ? ? 1.52 22 10 O A THR 48 ? ? H A ILE 52 ? ? 1.53 23 10 O A ILE 52 ? ? H A LYS 56 ? ? 1.57 24 11 O A THR 48 ? ? H A ILE 52 ? ? 1.51 25 11 O A TYR 34 ? ? H A LEU 38 ? ? 1.57 26 11 O A ASP 47 ? ? H A ALA 51 ? ? 1.58 27 12 O A VAL 17 ? ? HG A SER 20 ? ? 1.47 28 12 O A THR 48 ? ? H A ILE 52 ? ? 1.53 29 12 O A PRO 15 ? ? H A PHE 19 ? ? 1.54 30 13 O A THR 48 ? ? H A ILE 52 ? ? 1.52 31 14 O A THR 48 ? ? H A ILE 52 ? ? 1.51 32 14 O A PRO 15 ? ? H A PHE 19 ? ? 1.53 33 14 O A TYR 34 ? ? H A LEU 38 ? ? 1.54 34 14 O A ASP 47 ? ? H A ALA 51 ? ? 1.58 35 14 O A ILE 52 ? ? H A LYS 56 ? ? 1.60 36 15 O A ASN 37 ? ? H A LEU 41 ? ? 1.53 37 15 O A PRO 15 ? ? H A PHE 19 ? ? 1.53 38 15 O A THR 48 ? ? H A ILE 52 ? ? 1.57 39 15 O A TYR 34 ? ? H A LEU 38 ? ? 1.57 40 16 O A THR 48 ? ? H A ILE 52 ? ? 1.51 41 17 O A THR 48 ? ? H A ILE 52 ? ? 1.51 42 17 O A VAL 17 ? ? HG A SER 20 ? ? 1.57 43 18 O A THR 48 ? ? H A ILE 52 ? ? 1.52 44 18 O A ALA 50 ? ? H A LYS 54 ? ? 1.59 45 19 O A ALA 50 ? ? H A LYS 54 ? ? 1.52 46 19 O A THR 48 ? ? H A ILE 52 ? ? 1.56 47 19 O A TYR 34 ? ? H A LEU 38 ? ? 1.58 48 20 O A THR 48 ? ? H A ILE 52 ? ? 1.51 49 20 O A ALA 51 ? ? H A LEU 55 ? ? 1.55 50 20 O A TYR 34 ? ? H A LEU 38 ? ? 1.58 51 20 O A GLN 39 ? ? H A ALA 43 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? 62.17 109.63 2 1 SER A 6 ? ? -164.30 118.12 3 1 SER A 11 ? ? -178.68 131.63 4 1 LEU A 12 ? ? 65.80 85.85 5 1 PHE A 31 ? ? -69.34 75.55 6 1 ASN A 33 ? ? -44.35 96.90 7 1 PHE A 61 ? ? 51.56 98.70 8 1 SER A 62 ? ? -148.53 -58.14 9 2 SER A 2 ? ? -174.62 98.38 10 2 LEU A 12 ? ? -154.88 83.16 11 2 PHE A 19 ? ? -96.68 41.53 12 2 PHE A 31 ? ? -68.78 79.19 13 2 ASN A 33 ? ? -58.38 92.96 14 2 PHE A 61 ? ? -68.35 97.52 15 3 SER A 3 ? ? 40.24 81.43 16 3 SER A 9 ? ? 63.54 121.21 17 3 SER A 11 ? ? 64.16 88.27 18 3 LEU A 12 ? ? -173.11 100.95 19 3 ALA A 14 ? ? -48.83 154.56 20 3 PHE A 19 ? ? -96.81 34.89 21 3 ASN A 33 ? ? -47.16 95.38 22 3 PHE A 61 ? ? 47.58 97.22 23 3 SER A 65 ? ? -104.89 -60.17 24 4 SER A 5 ? ? 179.59 151.90 25 4 HIS A 10 ? ? -154.90 -59.86 26 4 ALA A 14 ? ? -47.18 154.18 27 4 PHE A 19 ? ? -90.72 30.72 28 4 PHE A 31 ? ? -68.33 75.86 29 4 ASN A 33 ? ? -60.06 84.67 30 4 ASP A 47 ? ? -160.27 83.20 31 4 SER A 66 ? ? -50.00 102.33 32 5 SER A 2 ? ? 60.40 85.16 33 5 SER A 3 ? ? -142.09 -58.35 34 5 SER A 5 ? ? 74.58 -57.89 35 5 HIS A 10 ? ? 64.62 95.33 36 5 LEU A 12 ? ? -80.04 -107.32 37 5 GLN A 13 ? ? 66.06 158.75 38 5 PHE A 31 ? ? -68.19 71.44 39 5 ASN A 33 ? ? -43.93 96.93 40 5 ASP A 47 ? ? -171.44 85.01 41 5 SER A 66 ? ? -44.27 161.34 42 6 SER A 9 ? ? -134.88 -57.20 43 6 HIS A 10 ? ? -98.90 -60.97 44 6 LEU A 12 ? ? 56.65 175.00 45 6 ALA A 14 ? ? -44.31 154.82 46 6 PHE A 19 ? ? -105.08 45.33 47 6 MET A 23 ? ? -38.29 -36.24 48 6 PHE A 31 ? ? -68.83 75.17 49 6 ASN A 33 ? ? -40.78 97.94 50 6 ASP A 47 ? ? -157.15 85.75 51 6 PHE A 61 ? ? -55.55 106.06 52 6 SER A 65 ? ? 46.31 81.36 53 6 SER A 66 ? ? -139.07 -57.94 54 7 SER A 2 ? ? 55.24 83.29 55 7 HIS A 10 ? ? 44.11 80.65 56 7 SER A 11 ? ? 39.91 89.23 57 7 LEU A 12 ? ? 59.85 -107.10 58 7 ASN A 33 ? ? -45.94 96.10 59 7 ASP A 47 ? ? -170.60 90.30 60 8 SER A 9 ? ? 178.50 159.68 61 8 HIS A 10 ? ? -151.53 88.45 62 8 ALA A 14 ? ? -49.39 153.85 63 8 PHE A 31 ? ? -67.46 73.70 64 8 ASN A 33 ? ? -40.98 97.82 65 8 GLN A 39 ? ? -38.93 -35.36 66 8 SER A 58 ? ? -59.32 109.09 67 8 PHE A 61 ? ? -44.52 109.02 68 9 SER A 5 ? ? -169.59 111.32 69 9 SER A 6 ? ? -169.70 -56.70 70 9 SER A 9 ? ? -39.61 148.75 71 9 HIS A 10 ? ? -173.40 73.08 72 9 SER A 11 ? ? 64.92 153.44 73 9 LEU A 12 ? ? 59.32 91.79 74 9 PHE A 31 ? ? -65.69 73.80 75 9 ASN A 33 ? ? -56.55 89.69 76 9 PHE A 61 ? ? 56.65 100.68 77 9 SER A 65 ? ? 69.36 -64.58 78 9 SER A 66 ? ? -167.28 97.30 79 10 SER A 2 ? ? 45.42 93.52 80 10 SER A 3 ? ? -175.72 -58.51 81 10 HIS A 10 ? ? -172.26 125.53 82 10 ALA A 14 ? ? -47.55 154.26 83 10 PHE A 31 ? ? -68.96 72.90 84 10 ASN A 33 ? ? -42.01 97.63 85 10 ASP A 45 ? ? 46.91 74.89 86 10 GLN A 59 ? ? -175.76 -58.91 87 10 SER A 65 ? ? 63.16 97.71 88 11 SER A 3 ? ? 58.91 97.68 89 11 SER A 11 ? ? 43.68 87.13 90 11 ALA A 14 ? ? -45.41 154.05 91 11 PHE A 31 ? ? -66.26 73.38 92 11 ASN A 33 ? ? -55.59 89.65 93 11 SER A 65 ? ? 52.43 88.30 94 12 HIS A 10 ? ? 69.70 89.91 95 12 SER A 11 ? ? 176.29 -57.89 96 12 LEU A 12 ? ? 42.72 76.55 97 12 ALA A 14 ? ? -47.16 152.59 98 12 PHE A 19 ? ? -107.20 41.18 99 12 PHE A 31 ? ? -68.16 73.26 100 12 ASN A 33 ? ? -43.84 97.02 101 12 GLN A 59 ? ? 56.48 92.23 102 12 PHE A 61 ? ? 51.86 95.92 103 12 SER A 62 ? ? 57.70 101.15 104 13 SER A 2 ? ? 61.07 98.29 105 13 GLN A 13 ? ? 56.70 162.42 106 13 ALA A 14 ? ? -47.36 154.72 107 13 PHE A 31 ? ? -69.51 74.62 108 13 ASN A 33 ? ? -54.64 90.78 109 13 ASP A 47 ? ? -159.46 82.93 110 13 GLN A 59 ? ? -160.17 -59.17 111 13 SER A 66 ? ? 65.89 140.47 112 14 SER A 3 ? ? 63.26 127.29 113 14 SER A 9 ? ? -176.33 96.63 114 14 HIS A 10 ? ? -106.68 77.21 115 14 SER A 11 ? ? -171.98 82.26 116 14 LEU A 12 ? ? 49.95 89.79 117 14 PHE A 19 ? ? -109.48 48.99 118 14 PHE A 31 ? ? -69.18 76.31 119 14 ASN A 33 ? ? -60.58 84.04 120 14 ASP A 45 ? ? 41.49 29.44 121 14 ASP A 47 ? ? -161.13 85.67 122 14 SER A 58 ? ? -56.14 104.47 123 14 GLN A 59 ? ? -168.03 84.69 124 14 SER A 65 ? ? -161.43 94.46 125 14 SER A 66 ? ? 78.87 -58.17 126 15 SER A 2 ? ? -174.94 121.87 127 15 SER A 3 ? ? -173.16 -58.61 128 15 ALA A 14 ? ? -47.72 155.13 129 15 PHE A 31 ? ? -68.92 75.97 130 15 ASN A 33 ? ? -48.36 95.13 131 15 PHE A 61 ? ? 52.58 100.74 132 15 SER A 66 ? ? 67.34 -71.23 133 16 SER A 2 ? ? -165.36 101.61 134 16 HIS A 10 ? ? 50.85 91.37 135 16 LEU A 12 ? ? -118.26 79.14 136 16 ALA A 14 ? ? -46.64 153.07 137 16 PHE A 19 ? ? -111.84 54.08 138 16 PHE A 31 ? ? -69.02 78.67 139 16 ASN A 33 ? ? -50.90 93.02 140 16 PHE A 61 ? ? 46.89 94.53 141 16 SER A 62 ? ? 65.31 148.38 142 17 SER A 3 ? ? -179.48 82.71 143 17 SER A 5 ? ? 178.03 80.02 144 17 SER A 6 ? ? -63.70 90.27 145 17 SER A 9 ? ? -152.00 86.10 146 17 LEU A 12 ? ? 62.98 103.47 147 17 ALA A 14 ? ? -41.42 154.70 148 17 PRO A 15 ? ? -74.89 -74.12 149 17 PHE A 19 ? ? -97.81 57.63 150 17 PHE A 31 ? ? -67.16 75.29 151 17 ASN A 33 ? ? -53.37 91.31 152 17 GLN A 59 ? ? -174.46 128.84 153 17 SER A 62 ? ? 55.73 167.79 154 18 SER A 2 ? ? -168.74 -58.06 155 18 SER A 5 ? ? 58.52 162.90 156 18 PHE A 19 ? ? -97.46 57.64 157 18 PHE A 31 ? ? -69.50 74.43 158 18 ASN A 33 ? ? -40.98 97.61 159 18 ASP A 47 ? ? -165.83 111.74 160 18 PHE A 61 ? ? 54.94 169.22 161 18 SER A 65 ? ? -178.18 95.64 162 19 SER A 3 ? ? 53.72 100.53 163 19 SER A 5 ? ? -151.68 -58.48 164 19 SER A 11 ? ? 60.99 159.56 165 19 GLN A 13 ? ? -59.15 173.57 166 19 ALA A 14 ? ? 59.41 154.45 167 19 PRO A 15 ? ? -75.03 -74.17 168 19 PHE A 31 ? ? -65.52 78.72 169 19 ASN A 33 ? ? -57.67 91.87 170 19 ASP A 47 ? ? -174.27 87.25 171 19 PHE A 61 ? ? 47.36 97.63 172 19 SER A 65 ? ? 58.19 98.60 173 20 SER A 5 ? ? 61.58 156.04 174 20 SER A 11 ? ? -178.56 -54.18 175 20 GLN A 13 ? ? 64.44 139.78 176 20 ALA A 14 ? ? 57.99 159.02 177 20 PRO A 15 ? ? -74.90 -71.01 178 20 PHE A 31 ? ? -69.93 74.48 179 20 ASN A 33 ? ? -41.97 97.52 180 20 SER A 62 ? ? 63.20 117.32 181 20 SER A 65 ? ? -174.20 111.74 #