data_2DYC # _entry.id 2DYC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2DYC RCSB RCSB025995 WWPDB D_1000025995 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmi002019836.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DYC _pdbx_database_status.recvd_initial_deposition_date 2006-09-08 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kato-Murayama, M.' 1 'Murayama, K.' 2 'Terada, T.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of the N-terminal domain of mouse galectin-4' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kato-Murayama, M.' 1 primary 'Murayama, K.' 2 primary 'Terada, T.' 3 primary 'Shirouzu, M.' 4 primary 'Yokoyama, S.' 5 # _cell.entry_id 2DYC _cell.length_a 92.053 _cell.length_b 92.053 _cell.length_c 132.908 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DYC _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Galectin-4 18149.283 1 ? ? 'residues 9-159' ? 2 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Lactose-binding lectin 4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGYQPTYNPTLPYKRPIPGGLSVG(MSE)SVYIQG(MSE)AKEN(MSE)RRFHVNFAVGQDDGADVAFHFNPRFD GWDKVVFNT(MSE)QSGQWGKEEKKKS(MSE)PFQKGKHFELVF(MSE)V(MSE)PEHYKVVVNGNSFYEYGHRLPVQ (MSE)VTHLQVDGDLELQSINFLGGQPAAAPY ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGYQPTYNPTLPYKRPIPGGLSVGMSVYIQGMAKENMRRFHVNFAVGQDDGADVAFHFNPRFDGWDKVVFNTMQS GQWGKEEKKKSMPFQKGKHFELVFMVMPEHYKVVVNGNSFYEYGHRLPVQMVTHLQVDGDLELQSINFLGGQPAAAPY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmi002019836.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TYR n 1 9 GLN n 1 10 PRO n 1 11 THR n 1 12 TYR n 1 13 ASN n 1 14 PRO n 1 15 THR n 1 16 LEU n 1 17 PRO n 1 18 TYR n 1 19 LYS n 1 20 ARG n 1 21 PRO n 1 22 ILE n 1 23 PRO n 1 24 GLY n 1 25 GLY n 1 26 LEU n 1 27 SER n 1 28 VAL n 1 29 GLY n 1 30 MSE n 1 31 SER n 1 32 VAL n 1 33 TYR n 1 34 ILE n 1 35 GLN n 1 36 GLY n 1 37 MSE n 1 38 ALA n 1 39 LYS n 1 40 GLU n 1 41 ASN n 1 42 MSE n 1 43 ARG n 1 44 ARG n 1 45 PHE n 1 46 HIS n 1 47 VAL n 1 48 ASN n 1 49 PHE n 1 50 ALA n 1 51 VAL n 1 52 GLY n 1 53 GLN n 1 54 ASP n 1 55 ASP n 1 56 GLY n 1 57 ALA n 1 58 ASP n 1 59 VAL n 1 60 ALA n 1 61 PHE n 1 62 HIS n 1 63 PHE n 1 64 ASN n 1 65 PRO n 1 66 ARG n 1 67 PHE n 1 68 ASP n 1 69 GLY n 1 70 TRP n 1 71 ASP n 1 72 LYS n 1 73 VAL n 1 74 VAL n 1 75 PHE n 1 76 ASN n 1 77 THR n 1 78 MSE n 1 79 GLN n 1 80 SER n 1 81 GLY n 1 82 GLN n 1 83 TRP n 1 84 GLY n 1 85 LYS n 1 86 GLU n 1 87 GLU n 1 88 LYS n 1 89 LYS n 1 90 LYS n 1 91 SER n 1 92 MSE n 1 93 PRO n 1 94 PHE n 1 95 GLN n 1 96 LYS n 1 97 GLY n 1 98 LYS n 1 99 HIS n 1 100 PHE n 1 101 GLU n 1 102 LEU n 1 103 VAL n 1 104 PHE n 1 105 MSE n 1 106 VAL n 1 107 MSE n 1 108 PRO n 1 109 GLU n 1 110 HIS n 1 111 TYR n 1 112 LYS n 1 113 VAL n 1 114 VAL n 1 115 VAL n 1 116 ASN n 1 117 GLY n 1 118 ASN n 1 119 SER n 1 120 PHE n 1 121 TYR n 1 122 GLU n 1 123 TYR n 1 124 GLY n 1 125 HIS n 1 126 ARG n 1 127 LEU n 1 128 PRO n 1 129 VAL n 1 130 GLN n 1 131 MSE n 1 132 VAL n 1 133 THR n 1 134 HIS n 1 135 LEU n 1 136 GLN n 1 137 VAL n 1 138 ASP n 1 139 GLY n 1 140 ASP n 1 141 LEU n 1 142 GLU n 1 143 LEU n 1 144 GLN n 1 145 SER n 1 146 ILE n 1 147 ASN n 1 148 PHE n 1 149 LEU n 1 150 GLY n 1 151 GLY n 1 152 GLN n 1 153 PRO n 1 154 ALA n 1 155 ALA n 1 156 ALA n 1 157 PRO n 1 158 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PX051128-10 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LEG4_MOUSE _struct_ref.pdbx_db_accession Q8K419 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YQPTYNPTLPYKRPIPGGLSVGMSVYIQGMAKENMRRFHVNFAVGQDDGADVAFHFNPRFDGWDKVVFNTMQSGQWGKEE KKKSMPFQKGKHFELVFMVMPEHYKVVVNGNSFYEYGHRLPVQMVTHLQVDGDLELQSINFLGGQPAAAPY ; _struct_ref.pdbx_align_begin 9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DYC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8K419 _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DYC GLY A 1 ? UNP Q8K419 ? ? 'EXPRESSION TAG' 2 1 1 2DYC SER A 2 ? UNP Q8K419 ? ? 'EXPRESSION TAG' 3 2 1 2DYC SER A 3 ? UNP Q8K419 ? ? 'EXPRESSION TAG' 4 3 1 2DYC GLY A 4 ? UNP Q8K419 ? ? 'EXPRESSION TAG' 5 4 1 2DYC SER A 5 ? UNP Q8K419 ? ? 'EXPRESSION TAG' 6 5 1 2DYC SER A 6 ? UNP Q8K419 ? ? 'EXPRESSION TAG' 7 6 1 2DYC GLY A 7 ? UNP Q8K419 ? ? 'EXPRESSION TAG' 8 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DYC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.88 _exptl_crystal.density_percent_sol 68.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '1.4M Ammonium Sulfate, 12% Glycerol, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-03-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9790 1.0 2 0.9794 1.0 3 0.970 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9790, 0.9794, 0.970' # _reflns.entry_id 2DYC _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.40 _reflns.number_obs 11598 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.109 _reflns.pdbx_netI_over_sigmaI 17.2 _reflns.B_iso_Wilson_estimate 21.5 _reflns.pdbx_redundancy 9.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.363 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2DYC _refine.ls_number_reflns_obs 11514 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2219713.47 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.50 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.22 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22 _refine.ls_R_factor_R_free 0.249 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1190 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 27.7 _refine.aniso_B[1][1] 0.06 _refine.aniso_B[2][2] 0.06 _refine.aniso_B[3][3] -0.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.37361 _refine.solvent_model_param_bsol 36.2163 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DYC _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.23 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.34 _refine_analyze.Luzzati_sigma_a_free 0.31 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1182 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 1263 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 46.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 27.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.73 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.58 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.67 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.43 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.61 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 1697 _refine_ls_shell.R_factor_R_work 0.234 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.percent_reflns_R_free 9.4 _refine_ls_shell.number_reflns_R_free 176 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water_rep.top 'X-RAY DIFFRACTION' # _struct.entry_id 2DYC _struct.title 'Crystal structure of the N-terminal domain of mouse galectin-4' _struct.pdbx_descriptor Galectin-4 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DYC _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text ;GAL-BIND LECTIN, GALECTIN, SUGAR BINDING, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SUGAR BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 128 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id VAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 132 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 129 _struct_conf.end_auth_comp_id VAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 133 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 29 C ? ? ? 1_555 A MSE 30 N ? ? A GLY 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 30 C ? ? ? 1_555 A SER 31 N ? ? A MSE 31 A SER 32 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale ? ? A GLY 36 C ? ? ? 1_555 A MSE 37 N ? ? A GLY 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 37 C ? ? ? 1_555 A ALA 38 N ? ? A MSE 38 A ALA 39 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A ASN 41 C ? ? ? 1_555 A MSE 42 N ? ? A ASN 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 42 C ? ? ? 1_555 A ARG 43 N ? ? A MSE 43 A ARG 44 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A THR 77 C ? ? ? 1_555 A MSE 78 N ? ? A THR 78 A MSE 79 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A MSE 78 C ? ? ? 1_555 A GLN 79 N ? ? A MSE 79 A GLN 80 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A SER 91 C ? ? ? 1_555 A MSE 92 N ? ? A SER 92 A MSE 93 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 92 C ? ? ? 1_555 A PRO 93 N ? ? A MSE 93 A PRO 94 1_555 ? ? ? ? ? ? ? 1.342 ? covale11 covale ? ? A PHE 104 C ? ? ? 1_555 A MSE 105 N ? ? A PHE 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.328 ? covale12 covale ? ? A MSE 105 C ? ? ? 1_555 A VAL 106 N ? ? A MSE 106 A VAL 107 1_555 ? ? ? ? ? ? ? 1.327 ? covale13 covale ? ? A VAL 106 C ? ? ? 1_555 A MSE 107 N ? ? A VAL 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.317 ? covale14 covale ? ? A MSE 107 C ? ? ? 1_555 A PRO 108 N ? ? A MSE 108 A PRO 109 1_555 ? ? ? ? ? ? ? 1.336 ? covale15 covale ? ? A GLN 130 C ? ? ? 1_555 A MSE 131 N ? ? A GLN 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.324 ? covale16 covale ? ? A MSE 131 C ? ? ? 1_555 A VAL 132 N ? ? A MSE 132 A VAL 133 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 16 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 17 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 17 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 18 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 18 ? PRO A 21 ? TYR A 19 PRO A 22 A 2 HIS A 134 ? GLY A 139 ? HIS A 135 GLY A 140 A 3 PHE A 45 ? ALA A 50 ? PHE A 46 ALA A 51 A 4 VAL A 59 ? ARG A 66 ? VAL A 60 ARG A 67 A 5 LYS A 72 ? GLN A 79 ? LYS A 73 GLN A 80 A 6 GLN A 82 ? TRP A 83 ? GLN A 83 TRP A 84 B 1 TYR A 18 ? PRO A 21 ? TYR A 19 PRO A 22 B 2 HIS A 134 ? GLY A 139 ? HIS A 135 GLY A 140 B 3 PHE A 45 ? ALA A 50 ? PHE A 46 ALA A 51 B 4 VAL A 59 ? ARG A 66 ? VAL A 60 ARG A 67 B 5 LYS A 72 ? GLN A 79 ? LYS A 73 GLN A 80 B 6 GLU A 87 ? LYS A 89 ? GLU A 88 LYS A 90 C 1 ASN A 118 ? GLY A 124 ? ASN A 119 GLY A 125 C 2 HIS A 110 ? VAL A 115 ? HIS A 111 VAL A 116 C 3 HIS A 99 ? VAL A 106 ? HIS A 100 VAL A 107 C 4 SER A 31 ? ALA A 38 ? SER A 32 ALA A 39 C 5 LEU A 141 ? LEU A 149 ? LEU A 142 LEU A 150 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 18 ? N TYR A 19 O VAL A 137 ? O VAL A 138 A 2 3 O GLN A 136 ? O GLN A 137 N ASN A 48 ? N ASN A 49 A 3 4 N VAL A 47 ? N VAL A 48 O PHE A 63 ? O PHE A 64 A 4 5 N ARG A 66 ? N ARG A 67 O LYS A 72 ? O LYS A 73 A 5 6 N GLN A 79 ? N GLN A 80 O GLN A 82 ? O GLN A 83 B 1 2 N TYR A 18 ? N TYR A 19 O VAL A 137 ? O VAL A 138 B 2 3 O GLN A 136 ? O GLN A 137 N ASN A 48 ? N ASN A 49 B 3 4 N VAL A 47 ? N VAL A 48 O PHE A 63 ? O PHE A 64 B 4 5 N ARG A 66 ? N ARG A 67 O LYS A 72 ? O LYS A 73 B 5 6 N PHE A 75 ? N PHE A 76 O GLU A 87 ? O GLU A 88 C 1 2 O PHE A 120 ? O PHE A 121 N VAL A 113 ? N VAL A 114 C 2 3 O LYS A 112 ? O LYS A 113 N MSE A 105 ? N MSE A 106 C 3 4 O LEU A 102 ? O LEU A 103 N ILE A 34 ? N ILE A 35 C 4 5 N TYR A 33 ? N TYR A 34 O ASN A 147 ? O ASN A 148 # _database_PDB_matrix.entry_id 2DYC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DYC _atom_sites.fract_transf_matrix[1][1] 0.010863 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010863 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007524 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2 ? ? ? A . n A 1 2 SER 2 3 ? ? ? A . n A 1 3 SER 3 4 ? ? ? A . n A 1 4 GLY 4 5 ? ? ? A . n A 1 5 SER 5 6 ? ? ? A . n A 1 6 SER 6 7 ? ? ? A . n A 1 7 GLY 7 8 ? ? ? A . n A 1 8 TYR 8 9 ? ? ? A . n A 1 9 GLN 9 10 ? ? ? A . n A 1 10 PRO 10 11 ? ? ? A . n A 1 11 THR 11 12 ? ? ? A . n A 1 12 TYR 12 13 13 TYR TYR A . n A 1 13 ASN 13 14 14 ASN ASN A . n A 1 14 PRO 14 15 15 PRO PRO A . n A 1 15 THR 15 16 16 THR THR A . n A 1 16 LEU 16 17 17 LEU LEU A . n A 1 17 PRO 17 18 18 PRO PRO A . n A 1 18 TYR 18 19 19 TYR TYR A . n A 1 19 LYS 19 20 20 LYS LYS A . n A 1 20 ARG 20 21 21 ARG ARG A . n A 1 21 PRO 21 22 22 PRO PRO A . n A 1 22 ILE 22 23 23 ILE ILE A . n A 1 23 PRO 23 24 24 PRO PRO A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 GLY 25 26 26 GLY GLY A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 SER 27 28 28 SER SER A . n A 1 28 VAL 28 29 29 VAL VAL A . n A 1 29 GLY 29 30 30 GLY GLY A . n A 1 30 MSE 30 31 31 MSE MSE A . n A 1 31 SER 31 32 32 SER SER A . n A 1 32 VAL 32 33 33 VAL VAL A . n A 1 33 TYR 33 34 34 TYR TYR A . n A 1 34 ILE 34 35 35 ILE ILE A . n A 1 35 GLN 35 36 36 GLN GLN A . n A 1 36 GLY 36 37 37 GLY GLY A . n A 1 37 MSE 37 38 38 MSE MSE A . n A 1 38 ALA 38 39 39 ALA ALA A . n A 1 39 LYS 39 40 40 LYS LYS A . n A 1 40 GLU 40 41 41 GLU GLU A . n A 1 41 ASN 41 42 42 ASN ASN A . n A 1 42 MSE 42 43 43 MSE MSE A . n A 1 43 ARG 43 44 44 ARG ARG A . n A 1 44 ARG 44 45 45 ARG ARG A . n A 1 45 PHE 45 46 46 PHE PHE A . n A 1 46 HIS 46 47 47 HIS HIS A . n A 1 47 VAL 47 48 48 VAL VAL A . n A 1 48 ASN 48 49 49 ASN ASN A . n A 1 49 PHE 49 50 50 PHE PHE A . n A 1 50 ALA 50 51 51 ALA ALA A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 GLY 52 53 53 GLY GLY A . n A 1 53 GLN 53 54 54 GLN GLN A . n A 1 54 ASP 54 55 55 ASP ASP A . n A 1 55 ASP 55 56 56 ASP ASP A . n A 1 56 GLY 56 57 57 GLY GLY A . n A 1 57 ALA 57 58 58 ALA ALA A . n A 1 58 ASP 58 59 59 ASP ASP A . n A 1 59 VAL 59 60 60 VAL VAL A . n A 1 60 ALA 60 61 61 ALA ALA A . n A 1 61 PHE 61 62 62 PHE PHE A . n A 1 62 HIS 62 63 63 HIS HIS A . n A 1 63 PHE 63 64 64 PHE PHE A . n A 1 64 ASN 64 65 65 ASN ASN A . n A 1 65 PRO 65 66 66 PRO PRO A . n A 1 66 ARG 66 67 67 ARG ARG A . n A 1 67 PHE 67 68 68 PHE PHE A . n A 1 68 ASP 68 69 69 ASP ASP A . n A 1 69 GLY 69 70 70 GLY GLY A . n A 1 70 TRP 70 71 71 TRP TRP A . n A 1 71 ASP 71 72 72 ASP ASP A . n A 1 72 LYS 72 73 73 LYS LYS A . n A 1 73 VAL 73 74 74 VAL VAL A . n A 1 74 VAL 74 75 75 VAL VAL A . n A 1 75 PHE 75 76 76 PHE PHE A . n A 1 76 ASN 76 77 77 ASN ASN A . n A 1 77 THR 77 78 78 THR THR A . n A 1 78 MSE 78 79 79 MSE MSE A . n A 1 79 GLN 79 80 80 GLN GLN A . n A 1 80 SER 80 81 81 SER SER A . n A 1 81 GLY 81 82 82 GLY GLY A . n A 1 82 GLN 82 83 83 GLN GLN A . n A 1 83 TRP 83 84 84 TRP TRP A . n A 1 84 GLY 84 85 85 GLY GLY A . n A 1 85 LYS 85 86 86 LYS LYS A . n A 1 86 GLU 86 87 87 GLU GLU A . n A 1 87 GLU 87 88 88 GLU GLU A . n A 1 88 LYS 88 89 89 LYS LYS A . n A 1 89 LYS 89 90 90 LYS LYS A . n A 1 90 LYS 90 91 91 LYS LYS A . n A 1 91 SER 91 92 92 SER SER A . n A 1 92 MSE 92 93 93 MSE MSE A . n A 1 93 PRO 93 94 94 PRO PRO A . n A 1 94 PHE 94 95 95 PHE PHE A . n A 1 95 GLN 95 96 96 GLN GLN A . n A 1 96 LYS 96 97 97 LYS LYS A . n A 1 97 GLY 97 98 98 GLY GLY A . n A 1 98 LYS 98 99 99 LYS LYS A . n A 1 99 HIS 99 100 100 HIS HIS A . n A 1 100 PHE 100 101 101 PHE PHE A . n A 1 101 GLU 101 102 102 GLU GLU A . n A 1 102 LEU 102 103 103 LEU LEU A . n A 1 103 VAL 103 104 104 VAL VAL A . n A 1 104 PHE 104 105 105 PHE PHE A . n A 1 105 MSE 105 106 106 MSE MSE A . n A 1 106 VAL 106 107 107 VAL VAL A . n A 1 107 MSE 107 108 108 MSE MSE A . n A 1 108 PRO 108 109 109 PRO PRO A . n A 1 109 GLU 109 110 110 GLU GLU A . n A 1 110 HIS 110 111 111 HIS HIS A . n A 1 111 TYR 111 112 112 TYR TYR A . n A 1 112 LYS 112 113 113 LYS LYS A . n A 1 113 VAL 113 114 114 VAL VAL A . n A 1 114 VAL 114 115 115 VAL VAL A . n A 1 115 VAL 115 116 116 VAL VAL A . n A 1 116 ASN 116 117 117 ASN ASN A . n A 1 117 GLY 117 118 118 GLY GLY A . n A 1 118 ASN 118 119 119 ASN ASN A . n A 1 119 SER 119 120 120 SER SER A . n A 1 120 PHE 120 121 121 PHE PHE A . n A 1 121 TYR 121 122 122 TYR TYR A . n A 1 122 GLU 122 123 123 GLU GLU A . n A 1 123 TYR 123 124 124 TYR TYR A . n A 1 124 GLY 124 125 125 GLY GLY A . n A 1 125 HIS 125 126 126 HIS HIS A . n A 1 126 ARG 126 127 127 ARG ARG A . n A 1 127 LEU 127 128 128 LEU LEU A . n A 1 128 PRO 128 129 129 PRO PRO A . n A 1 129 VAL 129 130 130 VAL VAL A . n A 1 130 GLN 130 131 131 GLN GLN A . n A 1 131 MSE 131 132 132 MSE MSE A . n A 1 132 VAL 132 133 133 VAL VAL A . n A 1 133 THR 133 134 134 THR THR A . n A 1 134 HIS 134 135 135 HIS HIS A . n A 1 135 LEU 135 136 136 LEU LEU A . n A 1 136 GLN 136 137 137 GLN GLN A . n A 1 137 VAL 137 138 138 VAL VAL A . n A 1 138 ASP 138 139 139 ASP ASP A . n A 1 139 GLY 139 140 140 GLY GLY A . n A 1 140 ASP 140 141 141 ASP ASP A . n A 1 141 LEU 141 142 142 LEU LEU A . n A 1 142 GLU 142 143 143 GLU GLU A . n A 1 143 LEU 143 144 144 LEU LEU A . n A 1 144 GLN 144 145 145 GLN GLN A . n A 1 145 SER 145 146 146 SER SER A . n A 1 146 ILE 146 147 147 ILE ILE A . n A 1 147 ASN 147 148 148 ASN ASN A . n A 1 148 PHE 148 149 149 PHE PHE A . n A 1 149 LEU 149 150 150 LEU LEU A . n A 1 150 GLY 150 151 151 GLY GLY A . n A 1 151 GLY 151 152 152 GLY GLY A . n A 1 152 GLN 152 153 153 GLN GLN A . n A 1 153 PRO 153 154 154 PRO PRO A . n A 1 154 ALA 154 155 155 ALA ALA A . n A 1 155 ALA 155 156 156 ALA ALA A . n A 1 156 ALA 156 157 157 ALA ALA A . n A 1 157 PRO 157 158 158 PRO PRO A . n A 1 158 TYR 158 159 159 TYR TYR A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 160 1 HOH TIP A . B 2 HOH 2 161 2 HOH TIP A . B 2 HOH 3 162 3 HOH TIP A . B 2 HOH 4 163 4 HOH TIP A . B 2 HOH 5 164 5 HOH TIP A . B 2 HOH 6 165 6 HOH TIP A . B 2 HOH 7 166 7 HOH TIP A . B 2 HOH 8 167 8 HOH TIP A . B 2 HOH 9 168 9 HOH TIP A . B 2 HOH 10 169 10 HOH TIP A . B 2 HOH 11 170 11 HOH TIP A . B 2 HOH 12 171 12 HOH TIP A . B 2 HOH 13 172 13 HOH TIP A . B 2 HOH 14 173 14 HOH TIP A . B 2 HOH 15 174 15 HOH TIP A . B 2 HOH 16 175 16 HOH TIP A . B 2 HOH 17 176 17 HOH TIP A . B 2 HOH 18 177 18 HOH TIP A . B 2 HOH 19 178 19 HOH TIP A . B 2 HOH 20 179 20 HOH TIP A . B 2 HOH 21 180 21 HOH TIP A . B 2 HOH 22 181 22 HOH TIP A . B 2 HOH 23 182 23 HOH TIP A . B 2 HOH 24 183 24 HOH TIP A . B 2 HOH 25 184 25 HOH TIP A . B 2 HOH 26 185 26 HOH TIP A . B 2 HOH 27 186 27 HOH TIP A . B 2 HOH 28 187 28 HOH TIP A . B 2 HOH 29 188 29 HOH TIP A . B 2 HOH 30 189 30 HOH TIP A . B 2 HOH 31 190 31 HOH TIP A . B 2 HOH 32 191 32 HOH TIP A . B 2 HOH 33 192 33 HOH TIP A . B 2 HOH 34 193 34 HOH TIP A . B 2 HOH 35 194 35 HOH TIP A . B 2 HOH 36 195 36 HOH TIP A . B 2 HOH 37 196 37 HOH TIP A . B 2 HOH 38 197 38 HOH TIP A . B 2 HOH 39 198 39 HOH TIP A . B 2 HOH 40 199 40 HOH TIP A . B 2 HOH 41 200 41 HOH TIP A . B 2 HOH 42 201 42 HOH TIP A . B 2 HOH 43 202 43 HOH TIP A . B 2 HOH 44 203 44 HOH TIP A . B 2 HOH 45 204 45 HOH TIP A . B 2 HOH 46 205 46 HOH TIP A . B 2 HOH 47 206 47 HOH TIP A . B 2 HOH 48 207 48 HOH TIP A . B 2 HOH 49 208 49 HOH TIP A . B 2 HOH 50 209 50 HOH TIP A . B 2 HOH 51 210 51 HOH TIP A . B 2 HOH 52 211 52 HOH TIP A . B 2 HOH 53 212 53 HOH TIP A . B 2 HOH 54 213 54 HOH TIP A . B 2 HOH 55 214 55 HOH TIP A . B 2 HOH 56 215 56 HOH TIP A . B 2 HOH 57 216 57 HOH TIP A . B 2 HOH 58 217 58 HOH TIP A . B 2 HOH 59 218 59 HOH TIP A . B 2 HOH 60 219 60 HOH TIP A . B 2 HOH 61 220 61 HOH TIP A . B 2 HOH 62 221 62 HOH TIP A . B 2 HOH 63 222 63 HOH TIP A . B 2 HOH 64 223 64 HOH TIP A . B 2 HOH 65 224 65 HOH TIP A . B 2 HOH 66 225 66 HOH TIP A . B 2 HOH 67 226 67 HOH TIP A . B 2 HOH 68 227 68 HOH TIP A . B 2 HOH 69 228 69 HOH TIP A . B 2 HOH 70 229 70 HOH TIP A . B 2 HOH 71 230 71 HOH TIP A . B 2 HOH 72 231 72 HOH TIP A . B 2 HOH 73 232 73 HOH TIP A . B 2 HOH 74 233 74 HOH TIP A . B 2 HOH 75 234 75 HOH TIP A . B 2 HOH 76 235 76 HOH TIP A . B 2 HOH 77 236 77 HOH TIP A . B 2 HOH 78 237 78 HOH TIP A . B 2 HOH 79 238 79 HOH TIP A . B 2 HOH 80 239 80 HOH TIP A . B 2 HOH 81 240 81 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 30 A MSE 31 ? MET SELENOMETHIONINE 2 A MSE 37 A MSE 38 ? MET SELENOMETHIONINE 3 A MSE 42 A MSE 43 ? MET SELENOMETHIONINE 4 A MSE 78 A MSE 79 ? MET SELENOMETHIONINE 5 A MSE 92 A MSE 93 ? MET SELENOMETHIONINE 6 A MSE 105 A MSE 106 ? MET SELENOMETHIONINE 7 A MSE 107 A MSE 108 ? MET SELENOMETHIONINE 8 A MSE 131 A MSE 132 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2,3,4,5,6,7,8 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 16820 ? 2 MORE -85 ? 2 'SSA (A^2)' 46180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 92.0530000000 0.0000000000 -1.0000000000 0.0000000000 92.0530000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 92.0530000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 92.0530000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 92.0530000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 92.0530000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0.0000000000 -1.0000000000 0.0000000000 92.0530000000 -1.0000000000 0.0000000000 0.0000000000 92.0530000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-16 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 BSS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 14 ? ? 73.97 45.71 2 1 PRO A 15 ? ? -60.10 -178.44 3 1 THR A 16 ? ? -84.27 -125.65 4 1 LEU A 17 ? ? 172.67 133.36 5 1 ALA A 155 ? ? 48.01 -110.66 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 2 ? A GLY 1 2 1 Y 1 A SER 3 ? A SER 2 3 1 Y 1 A SER 4 ? A SER 3 4 1 Y 1 A GLY 5 ? A GLY 4 5 1 Y 1 A SER 6 ? A SER 5 6 1 Y 1 A SER 7 ? A SER 6 7 1 Y 1 A GLY 8 ? A GLY 7 8 1 Y 1 A TYR 9 ? A TYR 8 9 1 Y 1 A GLN 10 ? A GLN 9 10 1 Y 1 A PRO 11 ? A PRO 10 11 1 Y 1 A THR 12 ? A THR 11 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #