data_2E42 # _entry.id 2E42 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2E42 pdb_00002e42 10.2210/pdb2e42/pdb NDB PD0944 ? ? RCSB RCSB026198 ? ? WWPDB D_1000026198 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1GU4 . unspecified PDB 2E43 'the same protein(K269A)/DNA complex at 2.1 A' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2E42 _pdbx_database_status.recvd_initial_deposition_date 2006-12-01 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tahirov, T.H.' 1 'Inoue-Bungo, T.' 2 'Sato, K.' 3 'Shiina, M.' 4 'Hamada, K.' 5 'Ogata, K.' 6 # _citation.id primary _citation.title 'Structural Basis for Flexible Base Recognition by C/Ebpbeta' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tahirov, T.H.' 1 ? primary 'Inoue-Bungo, T.' 2 ? primary 'Sato, K.' 3 ? primary 'Shiina, M.' 4 ? primary 'Hamada, K.' 5 ? primary 'Ogata, K.' 6 ? # _cell.entry_id 2E42 _cell.length_a 101.881 _cell.length_b 113.319 _cell.length_c 74.439 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2E42 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*DTP*DAP*DGP*DGP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DT)-3') ; 4937.228 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*DAP*DAP*DTP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DCP*DT)-3') ; 4857.179 1 ? ? ? ? 3 polymer man 'CCAAT/enhancer-binding protein beta' 9353.815 2 ? V285A 'residues 259-336' ? 4 water nat water 18.015 316 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'C/EBP beta, Nuclear factor NF-IL6, Transcription factor 5' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DG)(DG)(DA)(DT)(DT)(DG)(DC)(DG)(DC)(DA)(DA)(DT)(DA)(DT)' TAGGATTGCGCAATAT C ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DT)(DA)(DT)(DT)(DG)(DC)(DG)(DC)(DA)(DA)(DT)(DC)(DC)(DT)' AATATTGCGCAATCCT D ? 3 'polypeptide(L)' no no VKSKAKKTVDKHSDEYKIRRERNNIAARKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE VKSKAKKTVDKHSDEYKIRRERNNIAARKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DA n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DA n 1 16 DT n 2 1 DA n 2 2 DA n 2 3 DT n 2 4 DA n 2 5 DT n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DG n 2 10 DC n 2 11 DA n 2 12 DA n 2 13 DT n 2 14 DC n 2 15 DC n 2 16 DT n 3 1 VAL n 3 2 LYS n 3 3 SER n 3 4 LYS n 3 5 ALA n 3 6 LYS n 3 7 LYS n 3 8 THR n 3 9 VAL n 3 10 ASP n 3 11 LYS n 3 12 HIS n 3 13 SER n 3 14 ASP n 3 15 GLU n 3 16 TYR n 3 17 LYS n 3 18 ILE n 3 19 ARG n 3 20 ARG n 3 21 GLU n 3 22 ARG n 3 23 ASN n 3 24 ASN n 3 25 ILE n 3 26 ALA n 3 27 ALA n 3 28 ARG n 3 29 LYS n 3 30 SER n 3 31 ARG n 3 32 ASP n 3 33 LYS n 3 34 ALA n 3 35 LYS n 3 36 MET n 3 37 ARG n 3 38 ASN n 3 39 LEU n 3 40 GLU n 3 41 THR n 3 42 GLN n 3 43 HIS n 3 44 LYS n 3 45 VAL n 3 46 LEU n 3 47 GLU n 3 48 LEU n 3 49 THR n 3 50 ALA n 3 51 GLU n 3 52 ASN n 3 53 GLU n 3 54 ARG n 3 55 LEU n 3 56 GLN n 3 57 LYS n 3 58 LYS n 3 59 VAL n 3 60 GLU n 3 61 GLN n 3 62 LEU n 3 63 SER n 3 64 ARG n 3 65 GLU n 3 66 LEU n 3 67 SER n 3 68 THR n 3 69 LEU n 3 70 ARG n 3 71 ASN n 3 72 LEU n 3 73 PHE n 3 74 LYS n 3 75 GLN n 3 76 LEU n 3 77 PRO n 3 78 GLU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'CEBPB, TCF5' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PAR VECTOR' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CEBPB_HUMAN P17676 3 VKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 259 ? 2 PDB 2E42 2E42 1 TAGGATTGCGCAATAT 1 ? 3 PDB 2E42 2E42 2 AATATTGCGCAATCCT 101 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2E42 A 1 ? 78 ? P17676 259 ? 336 ? 259 336 2 1 2E42 B 1 ? 78 ? P17676 259 ? 336 ? 259 336 3 2 2E42 C 1 ? 16 ? 2E42 1 ? 16 ? 1 16 4 3 2E42 D 1 ? 16 ? 2E42 101 ? 116 ? 101 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2E42 ALA A 27 ? UNP P17676 VAL 285 'engineered mutation' 285 1 2 2E42 ALA B 27 ? UNP P17676 VAL 285 'engineered mutation' 285 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2E42 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.75 _exptl_crystal.density_percent_sol 67.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details 'magnesium chloride, MES, PEG400, PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'magnesium chloride' ? ? ? 1 2 1 MES ? ? ? 1 3 1 PEG400 ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'magnesium chloride' ? ? ? 1 6 2 MES ? ? ? 1 7 2 PEG400 ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-04-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44B2 _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2E42 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 39915 _reflns.number_all ? _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 33.90 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2E42 _refine.ls_number_reflns_obs 39771 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 1281223.230 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.42 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 98.6 _refine.ls_R_factor_obs 0.232 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.252 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.100 _refine.ls_number_reflns_R_free 3997 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.00 _refine.aniso_B[1][1] 4.84000 _refine.aniso_B[2][2] -2.86000 _refine.aniso_B[3][3] -1.98000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.37 _refine.solvent_model_param_bsol 61.07 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1GU4 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2E42 _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1123 _refine_hist.pdbx_number_atoms_nucleic_acid 658 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 316 _refine_hist.number_atoms_total 2097 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 35.42 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.10 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 15.90 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.14 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.160 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.830 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.590 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 6.590 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 5868 _refine_ls_shell.R_factor_R_work 0.333 _refine_ls_shell.percent_reflns_obs 99.40 _refine_ls_shell.R_factor_R_free 0.36 _refine_ls_shell.R_factor_R_free_error 0.014 _refine_ls_shell.percent_reflns_R_free 10.60 _refine_ls_shell.number_reflns_R_free 698 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2E42 _struct.title 'Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2E42 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, TRANSCRIPTION/DNA, TRANSCRIPTION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 13 ? LEU C 72 ? SER A 271 LEU A 330 1 ? 60 HELX_P HELX_P2 2 SER D 13 ? GLN D 75 ? SER B 271 GLN B 333 1 ? 63 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 16 N3 ? ? C DA 2 D DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 16 O4 ? ? C DA 2 D DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 15 N3 ? ? C DG 3 D DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 15 O2 ? ? C DG 3 D DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 15 N4 ? ? C DG 3 D DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 14 N3 ? ? C DG 4 D DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 14 O2 ? ? C DG 4 D DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 14 N4 ? ? C DG 4 D DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 13 N3 ? ? C DA 5 D DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 13 O4 ? ? C DA 5 D DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 6 D DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 6 D DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 11 N1 ? ? C DT 7 D DA 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 11 N6 ? ? C DT 7 D DA 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 10 N3 ? ? C DG 8 D DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 10 O2 ? ? C DG 8 D DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 10 N4 ? ? C DG 8 D DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 9 N1 ? ? C DC 9 D DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 9 O6 ? ? C DC 9 D DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 9 N2 ? ? C DC 9 D DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 8 N3 ? ? C DG 10 D DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 8 O2 ? ? C DG 10 D DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 8 N4 ? ? C DG 10 D DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 11 D DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 11 D DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 11 D DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 6 N3 ? ? C DA 12 D DT 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 6 O4 ? ? C DA 12 D DT 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 5 N3 ? ? C DA 13 D DT 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 5 O4 ? ? C DA 13 D DT 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 4 N1 ? ? C DT 14 D DA 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 4 N6 ? ? C DT 14 D DA 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 3 N3 ? ? C DA 15 D DT 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 3 O4 ? ? C DA 15 D DT 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 2 N1 ? ? C DT 16 D DA 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 2 N6 ? ? C DT 16 D DA 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2E42 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2E42 _atom_sites.fract_transf_matrix[1][1] 0.009815 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008825 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013434 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T C . n A 1 2 DA 2 2 2 DA A C . n A 1 3 DG 3 3 3 DG G C . n A 1 4 DG 4 4 4 DG G C . n A 1 5 DA 5 5 5 DA A C . n A 1 6 DT 6 6 6 DT T C . n A 1 7 DT 7 7 7 DT T C . n A 1 8 DG 8 8 8 DG G C . n A 1 9 DC 9 9 9 DC C C . n A 1 10 DG 10 10 10 DG G C . n A 1 11 DC 11 11 11 DC C C . n A 1 12 DA 12 12 12 DA A C . n A 1 13 DA 13 13 13 DA A C . n A 1 14 DT 14 14 14 DT T C . n A 1 15 DA 15 15 15 DA A C . n A 1 16 DT 16 16 16 DT T C . n B 2 1 DA 1 101 101 DA A D . n B 2 2 DA 2 102 102 DA A D . n B 2 3 DT 3 103 103 DT T D . n B 2 4 DA 4 104 104 DA A D . n B 2 5 DT 5 105 105 DT T D . n B 2 6 DT 6 106 106 DT T D . n B 2 7 DG 7 107 107 DG G D . n B 2 8 DC 8 108 108 DC C D . n B 2 9 DG 9 109 109 DG G D . n B 2 10 DC 10 110 110 DC C D . n B 2 11 DA 11 111 111 DA A D . n B 2 12 DA 12 112 112 DA A D . n B 2 13 DT 13 113 113 DT T D . n B 2 14 DC 14 114 114 DC C D . n B 2 15 DC 15 115 115 DC C D . n B 2 16 DT 16 116 116 DT T D . n C 3 1 VAL 1 259 ? ? ? A . n C 3 2 LYS 2 260 ? ? ? A . n C 3 3 SER 3 261 ? ? ? A . n C 3 4 LYS 4 262 ? ? ? A . n C 3 5 ALA 5 263 ? ? ? A . n C 3 6 LYS 6 264 ? ? ? A . n C 3 7 LYS 7 265 ? ? ? A . n C 3 8 THR 8 266 ? ? ? A . n C 3 9 VAL 9 267 ? ? ? A . n C 3 10 ASP 10 268 268 ASP ASP A . n C 3 11 LYS 11 269 269 LYS LYS A . n C 3 12 HIS 12 270 270 HIS HIS A . n C 3 13 SER 13 271 271 SER SER A . n C 3 14 ASP 14 272 272 ASP ASP A . n C 3 15 GLU 15 273 273 GLU GLU A . n C 3 16 TYR 16 274 274 TYR TYR A . n C 3 17 LYS 17 275 275 LYS LYS A . n C 3 18 ILE 18 276 276 ILE ILE A . n C 3 19 ARG 19 277 277 ARG ARG A . n C 3 20 ARG 20 278 278 ARG ARG A . n C 3 21 GLU 21 279 279 GLU GLU A . n C 3 22 ARG 22 280 280 ARG ARG A . n C 3 23 ASN 23 281 281 ASN ASN A . n C 3 24 ASN 24 282 282 ASN ASN A . n C 3 25 ILE 25 283 283 ILE ILE A . n C 3 26 ALA 26 284 284 ALA ALA A . n C 3 27 ALA 27 285 285 ALA ALA A . n C 3 28 ARG 28 286 286 ARG ARG A . n C 3 29 LYS 29 287 287 LYS LYS A . n C 3 30 SER 30 288 288 SER SER A . n C 3 31 ARG 31 289 289 ARG ARG A . n C 3 32 ASP 32 290 290 ASP ASP A . n C 3 33 LYS 33 291 291 LYS LYS A . n C 3 34 ALA 34 292 292 ALA ALA A . n C 3 35 LYS 35 293 293 LYS LYS A . n C 3 36 MET 36 294 294 MET MET A . n C 3 37 ARG 37 295 295 ARG ARG A . n C 3 38 ASN 38 296 296 ASN ASN A . n C 3 39 LEU 39 297 297 LEU LEU A . n C 3 40 GLU 40 298 298 GLU GLU A . n C 3 41 THR 41 299 299 THR THR A . n C 3 42 GLN 42 300 300 GLN GLN A . n C 3 43 HIS 43 301 301 HIS HIS A . n C 3 44 LYS 44 302 302 LYS LYS A . n C 3 45 VAL 45 303 303 VAL VAL A . n C 3 46 LEU 46 304 304 LEU LEU A . n C 3 47 GLU 47 305 305 GLU GLU A . n C 3 48 LEU 48 306 306 LEU LEU A . n C 3 49 THR 49 307 307 THR THR A . n C 3 50 ALA 50 308 308 ALA ALA A . n C 3 51 GLU 51 309 309 GLU GLU A . n C 3 52 ASN 52 310 310 ASN ASN A . n C 3 53 GLU 53 311 311 GLU GLU A . n C 3 54 ARG 54 312 312 ARG ARG A . n C 3 55 LEU 55 313 313 LEU LEU A . n C 3 56 GLN 56 314 314 GLN GLN A . n C 3 57 LYS 57 315 315 LYS LYS A . n C 3 58 LYS 58 316 316 LYS LYS A . n C 3 59 VAL 59 317 317 VAL VAL A . n C 3 60 GLU 60 318 318 GLU GLU A . n C 3 61 GLN 61 319 319 GLN GLN A . n C 3 62 LEU 62 320 320 LEU LEU A . n C 3 63 SER 63 321 321 SER SER A . n C 3 64 ARG 64 322 322 ARG ARG A . n C 3 65 GLU 65 323 323 GLU GLU A . n C 3 66 LEU 66 324 324 LEU LEU A . n C 3 67 SER 67 325 325 SER SER A . n C 3 68 THR 68 326 326 THR THR A . n C 3 69 LEU 69 327 327 LEU LEU A . n C 3 70 ARG 70 328 328 ARG ARG A . n C 3 71 ASN 71 329 329 ASN ASN A . n C 3 72 LEU 72 330 330 LEU LEU A . n C 3 73 PHE 73 331 331 PHE PHE A . n C 3 74 LYS 74 332 332 LYS LYS A . n C 3 75 GLN 75 333 ? ? ? A . n C 3 76 LEU 76 334 ? ? ? A . n C 3 77 PRO 77 335 ? ? ? A . n C 3 78 GLU 78 336 ? ? ? A . n D 3 1 VAL 1 259 ? ? ? B . n D 3 2 LYS 2 260 ? ? ? B . n D 3 3 SER 3 261 ? ? ? B . n D 3 4 LYS 4 262 ? ? ? B . n D 3 5 ALA 5 263 ? ? ? B . n D 3 6 LYS 6 264 ? ? ? B . n D 3 7 LYS 7 265 ? ? ? B . n D 3 8 THR 8 266 ? ? ? B . n D 3 9 VAL 9 267 ? ? ? B . n D 3 10 ASP 10 268 268 ASP ASP B . n D 3 11 LYS 11 269 269 LYS LYS B . n D 3 12 HIS 12 270 270 HIS HIS B . n D 3 13 SER 13 271 271 SER SER B . n D 3 14 ASP 14 272 272 ASP ASP B . n D 3 15 GLU 15 273 273 GLU GLU B . n D 3 16 TYR 16 274 274 TYR TYR B . n D 3 17 LYS 17 275 275 LYS LYS B . n D 3 18 ILE 18 276 276 ILE ILE B . n D 3 19 ARG 19 277 277 ARG ARG B . n D 3 20 ARG 20 278 278 ARG ARG B . n D 3 21 GLU 21 279 279 GLU GLU B . n D 3 22 ARG 22 280 280 ARG ARG B . n D 3 23 ASN 23 281 281 ASN ASN B . n D 3 24 ASN 24 282 282 ASN ASN B . n D 3 25 ILE 25 283 283 ILE ILE B . n D 3 26 ALA 26 284 284 ALA ALA B . n D 3 27 ALA 27 285 285 ALA ALA B . n D 3 28 ARG 28 286 286 ARG ARG B . n D 3 29 LYS 29 287 287 LYS LYS B . n D 3 30 SER 30 288 288 SER SER B . n D 3 31 ARG 31 289 289 ARG ARG B . n D 3 32 ASP 32 290 290 ASP ASP B . n D 3 33 LYS 33 291 291 LYS LYS B . n D 3 34 ALA 34 292 292 ALA ALA B . n D 3 35 LYS 35 293 293 LYS LYS B . n D 3 36 MET 36 294 294 MET MET B . n D 3 37 ARG 37 295 295 ARG ARG B . n D 3 38 ASN 38 296 296 ASN ASN B . n D 3 39 LEU 39 297 297 LEU LEU B . n D 3 40 GLU 40 298 298 GLU GLU B . n D 3 41 THR 41 299 299 THR THR B . n D 3 42 GLN 42 300 300 GLN GLN B . n D 3 43 HIS 43 301 301 HIS HIS B . n D 3 44 LYS 44 302 302 LYS LYS B . n D 3 45 VAL 45 303 303 VAL VAL B . n D 3 46 LEU 46 304 304 LEU LEU B . n D 3 47 GLU 47 305 305 GLU GLU B . n D 3 48 LEU 48 306 306 LEU LEU B . n D 3 49 THR 49 307 307 THR THR B . n D 3 50 ALA 50 308 308 ALA ALA B . n D 3 51 GLU 51 309 309 GLU GLU B . n D 3 52 ASN 52 310 310 ASN ASN B . n D 3 53 GLU 53 311 311 GLU GLU B . n D 3 54 ARG 54 312 312 ARG ARG B . n D 3 55 LEU 55 313 313 LEU LEU B . n D 3 56 GLN 56 314 314 GLN GLN B . n D 3 57 LYS 57 315 315 LYS LYS B . n D 3 58 LYS 58 316 316 LYS LYS B . n D 3 59 VAL 59 317 317 VAL VAL B . n D 3 60 GLU 60 318 318 GLU GLU B . n D 3 61 GLN 61 319 319 GLN GLN B . n D 3 62 LEU 62 320 320 LEU LEU B . n D 3 63 SER 63 321 321 SER SER B . n D 3 64 ARG 64 322 322 ARG ARG B . n D 3 65 GLU 65 323 323 GLU GLU B . n D 3 66 LEU 66 324 324 LEU LEU B . n D 3 67 SER 67 325 325 SER SER B . n D 3 68 THR 68 326 326 THR THR B . n D 3 69 LEU 69 327 327 LEU LEU B . n D 3 70 ARG 70 328 328 ARG ARG B . n D 3 71 ASN 71 329 329 ASN ASN B . n D 3 72 LEU 72 330 330 LEU LEU B . n D 3 73 PHE 73 331 331 PHE PHE B . n D 3 74 LYS 74 332 332 LYS LYS B . n D 3 75 GLN 75 333 333 GLN GLN B . n D 3 76 LEU 76 334 334 LEU LEU B . n D 3 77 PRO 77 335 ? ? ? B . n D 3 78 GLU 78 336 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 17 7 HOH HOH C . E 4 HOH 2 18 8 HOH HOH C . E 4 HOH 3 19 10 HOH HOH C . E 4 HOH 4 20 14 HOH HOH C . E 4 HOH 5 21 16 HOH HOH C . E 4 HOH 6 22 21 HOH HOH C . E 4 HOH 7 23 22 HOH HOH C . E 4 HOH 8 24 29 HOH HOH C . E 4 HOH 9 25 31 HOH HOH C . E 4 HOH 10 26 38 HOH HOH C . E 4 HOH 11 27 48 HOH HOH C . E 4 HOH 12 28 61 HOH HOH C . E 4 HOH 13 29 66 HOH HOH C . E 4 HOH 14 30 76 HOH HOH C . E 4 HOH 15 31 79 HOH HOH C . E 4 HOH 16 32 81 HOH HOH C . E 4 HOH 17 33 86 HOH HOH C . E 4 HOH 18 34 89 HOH HOH C . E 4 HOH 19 35 91 HOH HOH C . E 4 HOH 20 36 95 HOH HOH C . E 4 HOH 21 37 98 HOH HOH C . E 4 HOH 22 38 100 HOH HOH C . E 4 HOH 23 39 101 HOH HOH C . E 4 HOH 24 40 104 HOH HOH C . E 4 HOH 25 41 106 HOH HOH C . E 4 HOH 26 42 116 HOH HOH C . E 4 HOH 27 43 117 HOH HOH C . E 4 HOH 28 44 120 HOH HOH C . E 4 HOH 29 45 121 HOH HOH C . E 4 HOH 30 46 124 HOH HOH C . E 4 HOH 31 47 125 HOH HOH C . E 4 HOH 32 48 130 HOH HOH C . E 4 HOH 33 49 131 HOH HOH C . E 4 HOH 34 50 133 HOH HOH C . E 4 HOH 35 51 137 HOH HOH C . E 4 HOH 36 52 139 HOH HOH C . E 4 HOH 37 53 141 HOH HOH C . E 4 HOH 38 54 153 HOH HOH C . E 4 HOH 39 55 164 HOH HOH C . E 4 HOH 40 56 183 HOH HOH C . E 4 HOH 41 57 184 HOH HOH C . E 4 HOH 42 58 187 HOH HOH C . E 4 HOH 43 59 189 HOH HOH C . E 4 HOH 44 60 207 HOH HOH C . E 4 HOH 45 61 226 HOH HOH C . E 4 HOH 46 62 232 HOH HOH C . E 4 HOH 47 63 240 HOH HOH C . E 4 HOH 48 64 244 HOH HOH C . E 4 HOH 49 65 246 HOH HOH C . E 4 HOH 50 66 261 HOH HOH C . E 4 HOH 51 67 265 HOH HOH C . E 4 HOH 52 68 275 HOH HOH C . E 4 HOH 53 69 290 HOH HOH C . E 4 HOH 54 70 295 HOH HOH C . E 4 HOH 55 71 299 HOH HOH C . E 4 HOH 56 72 306 HOH HOH C . E 4 HOH 57 73 312 HOH HOH C . E 4 HOH 58 74 314 HOH HOH C . E 4 HOH 59 75 315 HOH HOH C . F 4 HOH 1 117 3 HOH HOH D . F 4 HOH 2 118 5 HOH HOH D . F 4 HOH 3 119 15 HOH HOH D . F 4 HOH 4 120 19 HOH HOH D . F 4 HOH 5 121 27 HOH HOH D . F 4 HOH 6 122 36 HOH HOH D . F 4 HOH 7 123 39 HOH HOH D . F 4 HOH 8 124 40 HOH HOH D . F 4 HOH 9 125 42 HOH HOH D . F 4 HOH 10 126 43 HOH HOH D . F 4 HOH 11 127 64 HOH HOH D . F 4 HOH 12 128 68 HOH HOH D . F 4 HOH 13 129 72 HOH HOH D . F 4 HOH 14 130 75 HOH HOH D . F 4 HOH 15 131 78 HOH HOH D . F 4 HOH 16 132 80 HOH HOH D . F 4 HOH 17 133 82 HOH HOH D . F 4 HOH 18 134 92 HOH HOH D . F 4 HOH 19 135 97 HOH HOH D . F 4 HOH 20 136 110 HOH HOH D . F 4 HOH 21 137 113 HOH HOH D . F 4 HOH 22 138 114 HOH HOH D . F 4 HOH 23 139 129 HOH HOH D . F 4 HOH 24 140 140 HOH HOH D . F 4 HOH 25 141 144 HOH HOH D . F 4 HOH 26 142 145 HOH HOH D . F 4 HOH 27 143 146 HOH HOH D . F 4 HOH 28 144 149 HOH HOH D . F 4 HOH 29 145 150 HOH HOH D . F 4 HOH 30 146 151 HOH HOH D . F 4 HOH 31 147 169 HOH HOH D . F 4 HOH 32 148 170 HOH HOH D . F 4 HOH 33 149 171 HOH HOH D . F 4 HOH 34 150 185 HOH HOH D . F 4 HOH 35 151 186 HOH HOH D . F 4 HOH 36 152 205 HOH HOH D . F 4 HOH 37 153 206 HOH HOH D . F 4 HOH 38 154 209 HOH HOH D . F 4 HOH 39 155 214 HOH HOH D . F 4 HOH 40 156 218 HOH HOH D . F 4 HOH 41 157 219 HOH HOH D . F 4 HOH 42 158 222 HOH HOH D . F 4 HOH 43 159 223 HOH HOH D . F 4 HOH 44 160 228 HOH HOH D . F 4 HOH 45 161 241 HOH HOH D . F 4 HOH 46 162 243 HOH HOH D . F 4 HOH 47 163 245 HOH HOH D . F 4 HOH 48 164 249 HOH HOH D . F 4 HOH 49 165 252 HOH HOH D . F 4 HOH 50 166 255 HOH HOH D . F 4 HOH 51 167 259 HOH HOH D . F 4 HOH 52 168 260 HOH HOH D . F 4 HOH 53 169 263 HOH HOH D . F 4 HOH 54 170 264 HOH HOH D . F 4 HOH 55 171 266 HOH HOH D . F 4 HOH 56 172 278 HOH HOH D . F 4 HOH 57 173 291 HOH HOH D . F 4 HOH 58 174 292 HOH HOH D . F 4 HOH 59 175 293 HOH HOH D . F 4 HOH 60 176 294 HOH HOH D . F 4 HOH 61 177 296 HOH HOH D . F 4 HOH 62 178 301 HOH HOH D . F 4 HOH 63 179 303 HOH HOH D . F 4 HOH 64 180 304 HOH HOH D . G 4 HOH 1 337 2 HOH HOH A . G 4 HOH 2 338 4 HOH HOH A . G 4 HOH 3 339 13 HOH HOH A . G 4 HOH 4 340 20 HOH HOH A . G 4 HOH 5 341 23 HOH HOH A . G 4 HOH 6 342 28 HOH HOH A . G 4 HOH 7 343 32 HOH HOH A . G 4 HOH 8 344 33 HOH HOH A . G 4 HOH 9 345 35 HOH HOH A . G 4 HOH 10 346 37 HOH HOH A . G 4 HOH 11 347 44 HOH HOH A . G 4 HOH 12 348 45 HOH HOH A . G 4 HOH 13 349 50 HOH HOH A . G 4 HOH 14 350 51 HOH HOH A . G 4 HOH 15 351 54 HOH HOH A . G 4 HOH 16 352 55 HOH HOH A . G 4 HOH 17 353 58 HOH HOH A . G 4 HOH 18 354 67 HOH HOH A . G 4 HOH 19 355 69 HOH HOH A . G 4 HOH 20 356 71 HOH HOH A . G 4 HOH 21 357 73 HOH HOH A . G 4 HOH 22 358 83 HOH HOH A . G 4 HOH 23 359 84 HOH HOH A . G 4 HOH 24 360 102 HOH HOH A . G 4 HOH 25 361 103 HOH HOH A . G 4 HOH 26 362 109 HOH HOH A . G 4 HOH 27 363 111 HOH HOH A . G 4 HOH 28 364 112 HOH HOH A . G 4 HOH 29 365 115 HOH HOH A . G 4 HOH 30 366 119 HOH HOH A . G 4 HOH 31 367 127 HOH HOH A . G 4 HOH 32 368 128 HOH HOH A . G 4 HOH 33 369 132 HOH HOH A . G 4 HOH 34 370 135 HOH HOH A . G 4 HOH 35 371 142 HOH HOH A . G 4 HOH 36 372 147 HOH HOH A . G 4 HOH 37 373 148 HOH HOH A . G 4 HOH 38 374 154 HOH HOH A . G 4 HOH 39 375 155 HOH HOH A . G 4 HOH 40 376 156 HOH HOH A . G 4 HOH 41 377 157 HOH HOH A . G 4 HOH 42 378 158 HOH HOH A . G 4 HOH 43 379 159 HOH HOH A . G 4 HOH 44 380 160 HOH HOH A . G 4 HOH 45 381 163 HOH HOH A . G 4 HOH 46 382 165 HOH HOH A . G 4 HOH 47 383 166 HOH HOH A . G 4 HOH 48 384 172 HOH HOH A . G 4 HOH 49 385 173 HOH HOH A . G 4 HOH 50 386 174 HOH HOH A . G 4 HOH 51 387 175 HOH HOH A . G 4 HOH 52 388 176 HOH HOH A . G 4 HOH 53 389 177 HOH HOH A . G 4 HOH 54 390 179 HOH HOH A . G 4 HOH 55 391 180 HOH HOH A . G 4 HOH 56 392 181 HOH HOH A . G 4 HOH 57 393 191 HOH HOH A . G 4 HOH 58 394 192 HOH HOH A . G 4 HOH 59 395 193 HOH HOH A . G 4 HOH 60 396 194 HOH HOH A . G 4 HOH 61 397 197 HOH HOH A . G 4 HOH 62 398 198 HOH HOH A . G 4 HOH 63 399 199 HOH HOH A . G 4 HOH 64 400 203 HOH HOH A . G 4 HOH 65 401 204 HOH HOH A . G 4 HOH 66 402 208 HOH HOH A . G 4 HOH 67 403 212 HOH HOH A . G 4 HOH 68 404 213 HOH HOH A . G 4 HOH 69 405 215 HOH HOH A . G 4 HOH 70 406 216 HOH HOH A . G 4 HOH 71 407 224 HOH HOH A . G 4 HOH 72 408 230 HOH HOH A . G 4 HOH 73 409 231 HOH HOH A . G 4 HOH 74 410 233 HOH HOH A . G 4 HOH 75 411 234 HOH HOH A . G 4 HOH 76 412 237 HOH HOH A . G 4 HOH 77 413 242 HOH HOH A . G 4 HOH 78 414 247 HOH HOH A . G 4 HOH 79 415 248 HOH HOH A . G 4 HOH 80 416 250 HOH HOH A . G 4 HOH 81 417 251 HOH HOH A . G 4 HOH 82 418 254 HOH HOH A . G 4 HOH 83 419 256 HOH HOH A . G 4 HOH 84 420 262 HOH HOH A . G 4 HOH 85 421 269 HOH HOH A . G 4 HOH 86 422 270 HOH HOH A . G 4 HOH 87 423 271 HOH HOH A . G 4 HOH 88 424 272 HOH HOH A . G 4 HOH 89 425 273 HOH HOH A . G 4 HOH 90 426 274 HOH HOH A . G 4 HOH 91 427 280 HOH HOH A . G 4 HOH 92 428 286 HOH HOH A . G 4 HOH 93 429 287 HOH HOH A . G 4 HOH 94 430 288 HOH HOH A . G 4 HOH 95 431 289 HOH HOH A . G 4 HOH 96 432 300 HOH HOH A . G 4 HOH 97 433 305 HOH HOH A . G 4 HOH 98 434 307 HOH HOH A . G 4 HOH 99 435 308 HOH HOH A . H 4 HOH 1 337 1 HOH HOH B . H 4 HOH 2 338 6 HOH HOH B . H 4 HOH 3 339 9 HOH HOH B . H 4 HOH 4 340 11 HOH HOH B . H 4 HOH 5 341 12 HOH HOH B . H 4 HOH 6 342 17 HOH HOH B . H 4 HOH 7 343 18 HOH HOH B . H 4 HOH 8 344 24 HOH HOH B . H 4 HOH 9 345 25 HOH HOH B . H 4 HOH 10 346 26 HOH HOH B . H 4 HOH 11 347 30 HOH HOH B . H 4 HOH 12 348 34 HOH HOH B . H 4 HOH 13 349 41 HOH HOH B . H 4 HOH 14 350 46 HOH HOH B . H 4 HOH 15 351 47 HOH HOH B . H 4 HOH 16 352 49 HOH HOH B . H 4 HOH 17 353 52 HOH HOH B . H 4 HOH 18 354 53 HOH HOH B . H 4 HOH 19 355 56 HOH HOH B . H 4 HOH 20 356 57 HOH HOH B . H 4 HOH 21 357 59 HOH HOH B . H 4 HOH 22 358 60 HOH HOH B . H 4 HOH 23 359 62 HOH HOH B . H 4 HOH 24 360 63 HOH HOH B . H 4 HOH 25 361 65 HOH HOH B . H 4 HOH 26 362 70 HOH HOH B . H 4 HOH 27 363 74 HOH HOH B . H 4 HOH 28 364 77 HOH HOH B . H 4 HOH 29 365 85 HOH HOH B . H 4 HOH 30 366 87 HOH HOH B . H 4 HOH 31 367 88 HOH HOH B . H 4 HOH 32 368 90 HOH HOH B . H 4 HOH 33 369 93 HOH HOH B . H 4 HOH 34 370 94 HOH HOH B . H 4 HOH 35 371 96 HOH HOH B . H 4 HOH 36 372 99 HOH HOH B . H 4 HOH 37 373 105 HOH HOH B . H 4 HOH 38 374 107 HOH HOH B . H 4 HOH 39 375 108 HOH HOH B . H 4 HOH 40 376 118 HOH HOH B . H 4 HOH 41 377 122 HOH HOH B . H 4 HOH 42 378 123 HOH HOH B . H 4 HOH 43 379 126 HOH HOH B . H 4 HOH 44 380 134 HOH HOH B . H 4 HOH 45 381 136 HOH HOH B . H 4 HOH 46 382 138 HOH HOH B . H 4 HOH 47 383 143 HOH HOH B . H 4 HOH 48 384 152 HOH HOH B . H 4 HOH 49 385 161 HOH HOH B . H 4 HOH 50 386 162 HOH HOH B . H 4 HOH 51 387 167 HOH HOH B . H 4 HOH 52 388 168 HOH HOH B . H 4 HOH 53 389 178 HOH HOH B . H 4 HOH 54 390 182 HOH HOH B . H 4 HOH 55 391 188 HOH HOH B . H 4 HOH 56 392 190 HOH HOH B . H 4 HOH 57 393 195 HOH HOH B . H 4 HOH 58 394 196 HOH HOH B . H 4 HOH 59 395 200 HOH HOH B . H 4 HOH 60 396 201 HOH HOH B . H 4 HOH 61 397 202 HOH HOH B . H 4 HOH 62 398 210 HOH HOH B . H 4 HOH 63 399 211 HOH HOH B . H 4 HOH 64 400 217 HOH HOH B . H 4 HOH 65 401 220 HOH HOH B . H 4 HOH 66 402 221 HOH HOH B . H 4 HOH 67 403 225 HOH HOH B . H 4 HOH 68 404 227 HOH HOH B . H 4 HOH 69 405 229 HOH HOH B . H 4 HOH 70 406 235 HOH HOH B . H 4 HOH 71 407 236 HOH HOH B . H 4 HOH 72 408 238 HOH HOH B . H 4 HOH 73 409 239 HOH HOH B . H 4 HOH 74 410 253 HOH HOH B . H 4 HOH 75 411 257 HOH HOH B . H 4 HOH 76 412 258 HOH HOH B . H 4 HOH 77 413 267 HOH HOH B . H 4 HOH 78 414 268 HOH HOH B . H 4 HOH 79 415 276 HOH HOH B . H 4 HOH 80 416 277 HOH HOH B . H 4 HOH 81 417 279 HOH HOH B . H 4 HOH 82 418 281 HOH HOH B . H 4 HOH 83 419 282 HOH HOH B . H 4 HOH 84 420 283 HOH HOH B . H 4 HOH 85 421 284 HOH HOH B . H 4 HOH 86 422 285 HOH HOH B . H 4 HOH 87 423 297 HOH HOH B . H 4 HOH 88 424 298 HOH HOH B . H 4 HOH 89 425 302 HOH HOH B . H 4 HOH 90 426 309 HOH HOH B . H 4 HOH 91 427 310 HOH HOH B . H 4 HOH 92 428 311 HOH HOH B . H 4 HOH 93 429 313 HOH HOH B . H 4 HOH 94 430 316 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_validate_close_contact 3 3 'Structure model' struct_ref_seq_dif 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 4 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 5 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 6 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 7 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing 1.1 ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 D _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 154 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 363 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P C DT 1 ? ? OP3 C DT 1 ? ? 1.523 1.607 -0.084 0.012 N 2 1 P D DA 101 ? ? OP3 D DA 101 ? ? 1.522 1.607 -0.085 0.012 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA D 102 ? ? 0.054 'SIDE CHAIN' 2 1 DC D 108 ? ? 0.059 'SIDE CHAIN' 3 1 DG D 109 ? ? 0.063 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 259 ? C VAL 1 2 1 Y 1 A LYS 260 ? C LYS 2 3 1 Y 1 A SER 261 ? C SER 3 4 1 Y 1 A LYS 262 ? C LYS 4 5 1 Y 1 A ALA 263 ? C ALA 5 6 1 Y 1 A LYS 264 ? C LYS 6 7 1 Y 1 A LYS 265 ? C LYS 7 8 1 Y 1 A THR 266 ? C THR 8 9 1 Y 1 A VAL 267 ? C VAL 9 10 1 Y 1 A GLN 333 ? C GLN 75 11 1 Y 1 A LEU 334 ? C LEU 76 12 1 Y 1 A PRO 335 ? C PRO 77 13 1 Y 1 A GLU 336 ? C GLU 78 14 1 Y 1 B VAL 259 ? D VAL 1 15 1 Y 1 B LYS 260 ? D LYS 2 16 1 Y 1 B SER 261 ? D SER 3 17 1 Y 1 B LYS 262 ? D LYS 4 18 1 Y 1 B ALA 263 ? D ALA 5 19 1 Y 1 B LYS 264 ? D LYS 6 20 1 Y 1 B LYS 265 ? D LYS 7 21 1 Y 1 B THR 266 ? D THR 8 22 1 Y 1 B VAL 267 ? D VAL 9 23 1 Y 1 B PRO 335 ? D PRO 77 24 1 Y 1 B GLU 336 ? D GLU 78 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 HIS N N N N 256 HIS CA C N S 257 HIS C C N N 258 HIS O O N N 259 HIS CB C N N 260 HIS CG C Y N 261 HIS ND1 N Y N 262 HIS CD2 C Y N 263 HIS CE1 C Y N 264 HIS NE2 N Y N 265 HIS OXT O N N 266 HIS H H N N 267 HIS H2 H N N 268 HIS HA H N N 269 HIS HB2 H N N 270 HIS HB3 H N N 271 HIS HD1 H N N 272 HIS HD2 H N N 273 HIS HE1 H N N 274 HIS HE2 H N N 275 HIS HXT H N N 276 HOH O O N N 277 HOH H1 H N N 278 HOH H2 H N N 279 ILE N N N N 280 ILE CA C N S 281 ILE C C N N 282 ILE O O N N 283 ILE CB C N S 284 ILE CG1 C N N 285 ILE CG2 C N N 286 ILE CD1 C N N 287 ILE OXT O N N 288 ILE H H N N 289 ILE H2 H N N 290 ILE HA H N N 291 ILE HB H N N 292 ILE HG12 H N N 293 ILE HG13 H N N 294 ILE HG21 H N N 295 ILE HG22 H N N 296 ILE HG23 H N N 297 ILE HD11 H N N 298 ILE HD12 H N N 299 ILE HD13 H N N 300 ILE HXT H N N 301 LEU N N N N 302 LEU CA C N S 303 LEU C C N N 304 LEU O O N N 305 LEU CB C N N 306 LEU CG C N N 307 LEU CD1 C N N 308 LEU CD2 C N N 309 LEU OXT O N N 310 LEU H H N N 311 LEU H2 H N N 312 LEU HA H N N 313 LEU HB2 H N N 314 LEU HB3 H N N 315 LEU HG H N N 316 LEU HD11 H N N 317 LEU HD12 H N N 318 LEU HD13 H N N 319 LEU HD21 H N N 320 LEU HD22 H N N 321 LEU HD23 H N N 322 LEU HXT H N N 323 LYS N N N N 324 LYS CA C N S 325 LYS C C N N 326 LYS O O N N 327 LYS CB C N N 328 LYS CG C N N 329 LYS CD C N N 330 LYS CE C N N 331 LYS NZ N N N 332 LYS OXT O N N 333 LYS H H N N 334 LYS H2 H N N 335 LYS HA H N N 336 LYS HB2 H N N 337 LYS HB3 H N N 338 LYS HG2 H N N 339 LYS HG3 H N N 340 LYS HD2 H N N 341 LYS HD3 H N N 342 LYS HE2 H N N 343 LYS HE3 H N N 344 LYS HZ1 H N N 345 LYS HZ2 H N N 346 LYS HZ3 H N N 347 LYS HXT H N N 348 MET N N N N 349 MET CA C N S 350 MET C C N N 351 MET O O N N 352 MET CB C N N 353 MET CG C N N 354 MET SD S N N 355 MET CE C N N 356 MET OXT O N N 357 MET H H N N 358 MET H2 H N N 359 MET HA H N N 360 MET HB2 H N N 361 MET HB3 H N N 362 MET HG2 H N N 363 MET HG3 H N N 364 MET HE1 H N N 365 MET HE2 H N N 366 MET HE3 H N N 367 MET HXT H N N 368 PHE N N N N 369 PHE CA C N S 370 PHE C C N N 371 PHE O O N N 372 PHE CB C N N 373 PHE CG C Y N 374 PHE CD1 C Y N 375 PHE CD2 C Y N 376 PHE CE1 C Y N 377 PHE CE2 C Y N 378 PHE CZ C Y N 379 PHE OXT O N N 380 PHE H H N N 381 PHE H2 H N N 382 PHE HA H N N 383 PHE HB2 H N N 384 PHE HB3 H N N 385 PHE HD1 H N N 386 PHE HD2 H N N 387 PHE HE1 H N N 388 PHE HE2 H N N 389 PHE HZ H N N 390 PHE HXT H N N 391 PRO N N N N 392 PRO CA C N S 393 PRO C C N N 394 PRO O O N N 395 PRO CB C N N 396 PRO CG C N N 397 PRO CD C N N 398 PRO OXT O N N 399 PRO H H N N 400 PRO HA H N N 401 PRO HB2 H N N 402 PRO HB3 H N N 403 PRO HG2 H N N 404 PRO HG3 H N N 405 PRO HD2 H N N 406 PRO HD3 H N N 407 PRO HXT H N N 408 SER N N N N 409 SER CA C N S 410 SER C C N N 411 SER O O N N 412 SER CB C N N 413 SER OG O N N 414 SER OXT O N N 415 SER H H N N 416 SER H2 H N N 417 SER HA H N N 418 SER HB2 H N N 419 SER HB3 H N N 420 SER HG H N N 421 SER HXT H N N 422 THR N N N N 423 THR CA C N S 424 THR C C N N 425 THR O O N N 426 THR CB C N R 427 THR OG1 O N N 428 THR CG2 C N N 429 THR OXT O N N 430 THR H H N N 431 THR H2 H N N 432 THR HA H N N 433 THR HB H N N 434 THR HG1 H N N 435 THR HG21 H N N 436 THR HG22 H N N 437 THR HG23 H N N 438 THR HXT H N N 439 TYR N N N N 440 TYR CA C N S 441 TYR C C N N 442 TYR O O N N 443 TYR CB C N N 444 TYR CG C Y N 445 TYR CD1 C Y N 446 TYR CD2 C Y N 447 TYR CE1 C Y N 448 TYR CE2 C Y N 449 TYR CZ C Y N 450 TYR OH O N N 451 TYR OXT O N N 452 TYR H H N N 453 TYR H2 H N N 454 TYR HA H N N 455 TYR HB2 H N N 456 TYR HB3 H N N 457 TYR HD1 H N N 458 TYR HD2 H N N 459 TYR HE1 H N N 460 TYR HE2 H N N 461 TYR HH H N N 462 TYR HXT H N N 463 VAL N N N N 464 VAL CA C N S 465 VAL C C N N 466 VAL O O N N 467 VAL CB C N N 468 VAL CG1 C N N 469 VAL CG2 C N N 470 VAL OXT O N N 471 VAL H H N N 472 VAL H2 H N N 473 VAL HA H N N 474 VAL HB H N N 475 VAL HG11 H N N 476 VAL HG12 H N N 477 VAL HG13 H N N 478 VAL HG21 H N N 479 VAL HG22 H N N 480 VAL HG23 H N N 481 VAL HXT H N N 482 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 HIS N CA sing N N 256 HIS N H sing N N 257 HIS N H2 sing N N 258 HIS CA C sing N N 259 HIS CA CB sing N N 260 HIS CA HA sing N N 261 HIS C O doub N N 262 HIS C OXT sing N N 263 HIS CB CG sing N N 264 HIS CB HB2 sing N N 265 HIS CB HB3 sing N N 266 HIS CG ND1 sing Y N 267 HIS CG CD2 doub Y N 268 HIS ND1 CE1 doub Y N 269 HIS ND1 HD1 sing N N 270 HIS CD2 NE2 sing Y N 271 HIS CD2 HD2 sing N N 272 HIS CE1 NE2 sing Y N 273 HIS CE1 HE1 sing N N 274 HIS NE2 HE2 sing N N 275 HIS OXT HXT sing N N 276 HOH O H1 sing N N 277 HOH O H2 sing N N 278 ILE N CA sing N N 279 ILE N H sing N N 280 ILE N H2 sing N N 281 ILE CA C sing N N 282 ILE CA CB sing N N 283 ILE CA HA sing N N 284 ILE C O doub N N 285 ILE C OXT sing N N 286 ILE CB CG1 sing N N 287 ILE CB CG2 sing N N 288 ILE CB HB sing N N 289 ILE CG1 CD1 sing N N 290 ILE CG1 HG12 sing N N 291 ILE CG1 HG13 sing N N 292 ILE CG2 HG21 sing N N 293 ILE CG2 HG22 sing N N 294 ILE CG2 HG23 sing N N 295 ILE CD1 HD11 sing N N 296 ILE CD1 HD12 sing N N 297 ILE CD1 HD13 sing N N 298 ILE OXT HXT sing N N 299 LEU N CA sing N N 300 LEU N H sing N N 301 LEU N H2 sing N N 302 LEU CA C sing N N 303 LEU CA CB sing N N 304 LEU CA HA sing N N 305 LEU C O doub N N 306 LEU C OXT sing N N 307 LEU CB CG sing N N 308 LEU CB HB2 sing N N 309 LEU CB HB3 sing N N 310 LEU CG CD1 sing N N 311 LEU CG CD2 sing N N 312 LEU CG HG sing N N 313 LEU CD1 HD11 sing N N 314 LEU CD1 HD12 sing N N 315 LEU CD1 HD13 sing N N 316 LEU CD2 HD21 sing N N 317 LEU CD2 HD22 sing N N 318 LEU CD2 HD23 sing N N 319 LEU OXT HXT sing N N 320 LYS N CA sing N N 321 LYS N H sing N N 322 LYS N H2 sing N N 323 LYS CA C sing N N 324 LYS CA CB sing N N 325 LYS CA HA sing N N 326 LYS C O doub N N 327 LYS C OXT sing N N 328 LYS CB CG sing N N 329 LYS CB HB2 sing N N 330 LYS CB HB3 sing N N 331 LYS CG CD sing N N 332 LYS CG HG2 sing N N 333 LYS CG HG3 sing N N 334 LYS CD CE sing N N 335 LYS CD HD2 sing N N 336 LYS CD HD3 sing N N 337 LYS CE NZ sing N N 338 LYS CE HE2 sing N N 339 LYS CE HE3 sing N N 340 LYS NZ HZ1 sing N N 341 LYS NZ HZ2 sing N N 342 LYS NZ HZ3 sing N N 343 LYS OXT HXT sing N N 344 MET N CA sing N N 345 MET N H sing N N 346 MET N H2 sing N N 347 MET CA C sing N N 348 MET CA CB sing N N 349 MET CA HA sing N N 350 MET C O doub N N 351 MET C OXT sing N N 352 MET CB CG sing N N 353 MET CB HB2 sing N N 354 MET CB HB3 sing N N 355 MET CG SD sing N N 356 MET CG HG2 sing N N 357 MET CG HG3 sing N N 358 MET SD CE sing N N 359 MET CE HE1 sing N N 360 MET CE HE2 sing N N 361 MET CE HE3 sing N N 362 MET OXT HXT sing N N 363 PHE N CA sing N N 364 PHE N H sing N N 365 PHE N H2 sing N N 366 PHE CA C sing N N 367 PHE CA CB sing N N 368 PHE CA HA sing N N 369 PHE C O doub N N 370 PHE C OXT sing N N 371 PHE CB CG sing N N 372 PHE CB HB2 sing N N 373 PHE CB HB3 sing N N 374 PHE CG CD1 doub Y N 375 PHE CG CD2 sing Y N 376 PHE CD1 CE1 sing Y N 377 PHE CD1 HD1 sing N N 378 PHE CD2 CE2 doub Y N 379 PHE CD2 HD2 sing N N 380 PHE CE1 CZ doub Y N 381 PHE CE1 HE1 sing N N 382 PHE CE2 CZ sing Y N 383 PHE CE2 HE2 sing N N 384 PHE CZ HZ sing N N 385 PHE OXT HXT sing N N 386 PRO N CA sing N N 387 PRO N CD sing N N 388 PRO N H sing N N 389 PRO CA C sing N N 390 PRO CA CB sing N N 391 PRO CA HA sing N N 392 PRO C O doub N N 393 PRO C OXT sing N N 394 PRO CB CG sing N N 395 PRO CB HB2 sing N N 396 PRO CB HB3 sing N N 397 PRO CG CD sing N N 398 PRO CG HG2 sing N N 399 PRO CG HG3 sing N N 400 PRO CD HD2 sing N N 401 PRO CD HD3 sing N N 402 PRO OXT HXT sing N N 403 SER N CA sing N N 404 SER N H sing N N 405 SER N H2 sing N N 406 SER CA C sing N N 407 SER CA CB sing N N 408 SER CA HA sing N N 409 SER C O doub N N 410 SER C OXT sing N N 411 SER CB OG sing N N 412 SER CB HB2 sing N N 413 SER CB HB3 sing N N 414 SER OG HG sing N N 415 SER OXT HXT sing N N 416 THR N CA sing N N 417 THR N H sing N N 418 THR N H2 sing N N 419 THR CA C sing N N 420 THR CA CB sing N N 421 THR CA HA sing N N 422 THR C O doub N N 423 THR C OXT sing N N 424 THR CB OG1 sing N N 425 THR CB CG2 sing N N 426 THR CB HB sing N N 427 THR OG1 HG1 sing N N 428 THR CG2 HG21 sing N N 429 THR CG2 HG22 sing N N 430 THR CG2 HG23 sing N N 431 THR OXT HXT sing N N 432 TYR N CA sing N N 433 TYR N H sing N N 434 TYR N H2 sing N N 435 TYR CA C sing N N 436 TYR CA CB sing N N 437 TYR CA HA sing N N 438 TYR C O doub N N 439 TYR C OXT sing N N 440 TYR CB CG sing N N 441 TYR CB HB2 sing N N 442 TYR CB HB3 sing N N 443 TYR CG CD1 doub Y N 444 TYR CG CD2 sing Y N 445 TYR CD1 CE1 sing Y N 446 TYR CD1 HD1 sing N N 447 TYR CD2 CE2 doub Y N 448 TYR CD2 HD2 sing N N 449 TYR CE1 CZ doub Y N 450 TYR CE1 HE1 sing N N 451 TYR CE2 CZ sing Y N 452 TYR CE2 HE2 sing N N 453 TYR CZ OH sing N N 454 TYR OH HH sing N N 455 TYR OXT HXT sing N N 456 VAL N CA sing N N 457 VAL N H sing N N 458 VAL N H2 sing N N 459 VAL CA C sing N N 460 VAL CA CB sing N N 461 VAL CA HA sing N N 462 VAL C O doub N N 463 VAL C OXT sing N N 464 VAL CB CG1 sing N N 465 VAL CB CG2 sing N N 466 VAL CB HB sing N N 467 VAL CG1 HG11 sing N N 468 VAL CG1 HG12 sing N N 469 VAL CG1 HG13 sing N N 470 VAL CG2 HG21 sing N N 471 VAL CG2 HG22 sing N N 472 VAL CG2 HG23 sing N N 473 VAL OXT HXT sing N N 474 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2E42 'double helix' 2E42 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 16 1_555 -0.101 -0.081 -0.403 -3.503 -9.899 -1.078 1 C_DA2:DT116_D C 2 ? D 116 ? 20 1 1 A DG 3 1_555 B DC 15 1_555 -0.086 -0.153 0.145 8.429 -6.690 3.567 2 C_DG3:DC115_D C 3 ? D 115 ? 19 1 1 A DG 4 1_555 B DC 14 1_555 0.291 -0.278 0.013 7.659 -11.778 -4.238 3 C_DG4:DC114_D C 4 ? D 114 ? 19 1 1 A DA 5 1_555 B DT 13 1_555 0.138 -0.025 -0.108 -7.779 -14.192 7.952 4 C_DA5:DT113_D C 5 ? D 113 ? 20 1 1 A DT 6 1_555 B DA 12 1_555 -0.153 -0.129 0.018 -7.628 -16.474 1.948 5 C_DT6:DA112_D C 6 ? D 112 ? 20 1 1 A DT 7 1_555 B DA 11 1_555 -0.017 -0.125 -0.018 -4.445 -9.233 2.593 6 C_DT7:DA111_D C 7 ? D 111 ? 20 1 1 A DG 8 1_555 B DC 10 1_555 -0.060 0.042 0.159 8.409 -3.860 -3.073 7 C_DG8:DC110_D C 8 ? D 110 ? 19 1 1 A DC 9 1_555 B DG 9 1_555 0.189 -0.148 0.201 3.133 -13.374 -3.068 8 C_DC9:DG109_D C 9 ? D 109 ? 19 1 1 A DG 10 1_555 B DC 8 1_555 -0.078 -0.110 -0.002 2.359 -6.598 -5.479 9 C_DG10:DC108_D C 10 ? D 108 ? 19 1 1 A DC 11 1_555 B DG 7 1_555 0.185 -0.182 0.011 -2.924 -9.123 -2.971 10 C_DC11:DG107_D C 11 ? D 107 ? 19 1 1 A DA 12 1_555 B DT 6 1_555 -0.194 -0.170 0.113 0.815 -5.790 6.145 11 C_DA12:DT106_D C 12 ? D 106 ? 20 1 1 A DA 13 1_555 B DT 5 1_555 -0.130 -0.042 0.203 6.197 -14.530 1.760 12 C_DA13:DT105_D C 13 ? D 105 ? 20 1 1 A DT 14 1_555 B DA 4 1_555 -0.006 0.005 0.278 6.491 -7.924 11.109 13 C_DT14:DA104_D C 14 ? D 104 ? 20 1 1 A DA 15 1_555 B DT 3 1_555 0.244 -0.259 0.020 -8.126 -11.712 -0.684 14 C_DA15:DT103_D C 15 ? D 103 ? 20 1 1 A DT 16 1_555 B DA 2 1_555 -0.063 -0.187 0.007 -9.270 -8.430 -2.679 15 C_DT16:DA102_D C 16 ? D 102 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 16 1_555 A DG 3 1_555 B DC 15 1_555 0.326 -0.642 2.964 -2.335 4.638 28.481 -2.194 -1.112 2.791 9.329 4.697 28.941 1 CC_DA2DG3:DC115DT116_DD C 2 ? D 116 ? C 3 ? D 115 ? 1 A DG 3 1_555 B DC 15 1_555 A DG 4 1_555 B DC 14 1_555 -0.997 -0.242 3.349 -1.931 0.674 37.677 -0.464 1.284 3.390 1.043 2.988 37.730 2 CC_DG3DG4:DC114DC115_DD C 3 ? D 115 ? C 4 ? D 114 ? 1 A DG 4 1_555 B DC 14 1_555 A DA 5 1_555 B DT 13 1_555 0.195 -0.581 3.509 0.330 0.947 40.963 -0.941 -0.240 3.497 1.353 -0.471 40.975 3 CC_DG4DA5:DT113DC114_DD C 4 ? D 114 ? C 5 ? D 113 ? 1 A DA 5 1_555 B DT 13 1_555 A DT 6 1_555 B DA 12 1_555 -0.633 -0.703 3.186 -1.010 0.515 28.657 -1.533 1.055 3.193 1.040 2.039 28.678 4 CC_DA5DT6:DA112DT113_DD C 5 ? D 113 ? C 6 ? D 112 ? 1 A DT 6 1_555 B DA 12 1_555 A DT 7 1_555 B DA 11 1_555 0.713 0.176 3.218 1.746 5.332 34.602 -0.504 -0.923 3.240 8.891 -2.912 35.041 5 CC_DT6DT7:DA111DA112_DD C 6 ? D 112 ? C 7 ? D 111 ? 1 A DT 7 1_555 B DA 11 1_555 A DG 8 1_555 B DC 10 1_555 -0.957 0.025 3.093 -5.127 3.600 30.034 -0.640 0.829 3.190 6.854 9.760 30.665 6 CC_DT7DG8:DC110DA111_DD C 7 ? D 111 ? C 8 ? D 110 ? 1 A DG 8 1_555 B DC 10 1_555 A DC 9 1_555 B DG 9 1_555 0.616 -0.500 3.466 0.218 3.059 36.055 -1.259 -0.959 3.417 4.931 -0.351 36.181 7 CC_DG8DC9:DG109DC110_DD C 8 ? D 110 ? C 9 ? D 109 ? 1 A DC 9 1_555 B DG 9 1_555 A DG 10 1_555 B DC 8 1_555 -0.962 -0.583 3.306 -0.522 10.425 31.340 -2.774 1.607 2.980 18.661 0.934 32.991 8 CC_DC9DG10:DC108DG109_DD C 9 ? D 109 ? C 10 ? D 108 ? 1 A DG 10 1_555 B DC 8 1_555 A DC 11 1_555 B DG 7 1_555 0.069 -0.287 3.409 0.630 1.471 33.659 -0.744 -0.012 3.395 2.539 -1.088 33.696 9 CC_DG10DC11:DG107DC108_DD C 10 ? D 108 ? C 11 ? D 107 ? 1 A DC 11 1_555 B DG 7 1_555 A DA 12 1_555 B DT 6 1_555 1.522 1.049 3.134 5.282 8.442 34.762 0.463 -1.685 3.474 13.784 -8.623 36.117 10 CC_DC11DA12:DT106DG107_DD C 11 ? D 107 ? C 12 ? D 106 ? 1 A DA 12 1_555 B DT 6 1_555 A DA 13 1_555 B DT 5 1_555 -0.753 0.327 3.143 -4.051 5.115 35.392 -0.185 0.654 3.221 8.326 6.594 35.969 11 CC_DA12DA13:DT105DT106_DD C 12 ? D 106 ? C 13 ? D 105 ? 1 A DA 13 1_555 B DT 5 1_555 A DT 14 1_555 B DA 4 1_555 0.794 -0.785 3.172 -0.782 0.569 30.962 -1.575 -1.633 3.137 1.065 1.464 30.977 12 CC_DA13DT14:DA104DT105_DD C 13 ? D 105 ? C 14 ? D 104 ? 1 A DT 14 1_555 B DA 4 1_555 A DA 15 1_555 B DT 3 1_555 -0.270 -0.572 3.407 2.095 3.156 39.877 -1.208 0.642 3.336 4.615 -3.063 40.049 13 CC_DT14DA15:DT103DA104_DD C 14 ? D 104 ? C 15 ? D 103 ? 1 A DA 15 1_555 B DT 3 1_555 A DT 16 1_555 B DA 2 1_555 0.046 -0.630 3.378 -0.189 2.613 34.483 -1.474 -0.107 3.323 4.400 0.317 34.580 14 CC_DA15DT16:DA102DT103_DD C 15 ? D 103 ? C 16 ? D 102 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GU4 _pdbx_initial_refinement_model.details ? #