data_2EDX # _entry.id 2EDX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EDX pdb_00002edx 10.2210/pdb2edx/pdb RCSB RCSB026544 ? ? WWPDB D_1000026544 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003001516.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EDX _pdbx_database_status.recvd_initial_deposition_date 2007-02-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sato, M.' 1 'Koshiba, S.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structures of the fn3 domain of human receptor-type tyrosine-protein phosphatase F' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sato, M.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein tyrosine phosphatase, receptor type, F' _entity.formula_weight 14246.598 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.1.3.48 _entity.pdbx_mutation ? _entity.pdbx_fragment 'Fibronectin type III domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Receptor-type tyrosine-protein phosphatase F' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSS WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSS WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003001516.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 THR n 1 9 ILE n 1 10 GLU n 1 11 ALA n 1 12 ARG n 1 13 THR n 1 14 ALA n 1 15 GLN n 1 16 SER n 1 17 THR n 1 18 PRO n 1 19 SER n 1 20 ALA n 1 21 PRO n 1 22 PRO n 1 23 GLN n 1 24 LYS n 1 25 VAL n 1 26 MET n 1 27 CYS n 1 28 VAL n 1 29 SER n 1 30 MET n 1 31 GLY n 1 32 SER n 1 33 THR n 1 34 THR n 1 35 VAL n 1 36 ARG n 1 37 VAL n 1 38 SER n 1 39 TRP n 1 40 VAL n 1 41 PRO n 1 42 PRO n 1 43 PRO n 1 44 ALA n 1 45 ASP n 1 46 SER n 1 47 ARG n 1 48 ASN n 1 49 GLY n 1 50 VAL n 1 51 ILE n 1 52 THR n 1 53 GLN n 1 54 TYR n 1 55 SER n 1 56 VAL n 1 57 ALA n 1 58 TYR n 1 59 GLU n 1 60 ALA n 1 61 VAL n 1 62 ASP n 1 63 GLY n 1 64 GLU n 1 65 ASP n 1 66 ARG n 1 67 GLY n 1 68 ARG n 1 69 HIS n 1 70 VAL n 1 71 VAL n 1 72 ASP n 1 73 GLY n 1 74 ILE n 1 75 SER n 1 76 ARG n 1 77 GLU n 1 78 HIS n 1 79 SER n 1 80 SER n 1 81 TRP n 1 82 ASP n 1 83 LEU n 1 84 VAL n 1 85 GLY n 1 86 LEU n 1 87 GLU n 1 88 LYS n 1 89 TRP n 1 90 THR n 1 91 GLU n 1 92 TYR n 1 93 ARG n 1 94 VAL n 1 95 TRP n 1 96 VAL n 1 97 ARG n 1 98 ALA n 1 99 HIS n 1 100 THR n 1 101 ASP n 1 102 VAL n 1 103 GLY n 1 104 PRO n 1 105 GLY n 1 106 PRO n 1 107 GLU n 1 108 SER n 1 109 SER n 1 110 PRO n 1 111 VAL n 1 112 LEU n 1 113 VAL n 1 114 ARG n 1 115 THR n 1 116 ASP n 1 117 GLU n 1 118 ASP n 1 119 VAL n 1 120 PRO n 1 121 SER n 1 122 GLY n 1 123 PRO n 1 124 PRO n 1 125 ARG n 1 126 LYS n 1 127 VAL n 1 128 GLU n 1 129 SER n 1 130 GLY n 1 131 PRO n 1 132 SER n 1 133 SER n 1 134 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PTPRF _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051003-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5T022_HUMAN _struct_ref.pdbx_db_accession Q5T022 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLE KWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVE ; _struct_ref.pdbx_align_begin 596 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EDX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5T022 _struct_ref_seq.db_align_beg 596 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 716 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 128 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EDX GLY A 1 ? UNP Q5T022 ? ? 'cloning artifact' 1 1 1 2EDX SER A 2 ? UNP Q5T022 ? ? 'cloning artifact' 2 2 1 2EDX SER A 3 ? UNP Q5T022 ? ? 'cloning artifact' 3 3 1 2EDX GLY A 4 ? UNP Q5T022 ? ? 'cloning artifact' 4 4 1 2EDX SER A 5 ? UNP Q5T022 ? ? 'cloning artifact' 5 5 1 2EDX SER A 6 ? UNP Q5T022 ? ? 'cloning artifact' 6 6 1 2EDX GLY A 7 ? UNP Q5T022 ? ? 'cloning artifact' 7 7 1 2EDX SER A 129 ? UNP Q5T022 ? ? 'cloning artifact' 129 8 1 2EDX GLY A 130 ? UNP Q5T022 ? ? 'cloning artifact' 130 9 1 2EDX PRO A 131 ? UNP Q5T022 ? ? 'cloning artifact' 131 10 1 2EDX SER A 132 ? UNP Q5T022 ? ? 'cloning artifact' 132 11 1 2EDX SER A 133 ? UNP Q5T022 ? ? 'cloning artifact' 133 12 1 2EDX GLY A 134 ? UNP Q5T022 ? ? 'cloning artifact' 134 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.7mM fn3 domain U-15N, 13C; 20mM d-Tris HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EDX _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EDX _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EDX _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EDX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EDX _struct.title 'Solution structures of the fn3 domain of human receptor-type tyrosine-protein phosphatase F' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EDX _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;EC 3.1.3.48, LAR protein, Leukocyte antigen related, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 1 -0.01 2 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 2 -0.06 3 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 3 -0.08 4 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 4 -0.10 5 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 5 -0.09 6 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 6 -0.11 7 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 7 -0.03 8 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 8 -0.14 9 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 9 -0.05 10 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 10 -0.10 11 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 11 -0.03 12 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 12 -0.06 13 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 13 -0.03 14 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 14 0.00 15 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 15 -0.07 16 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 16 -0.11 17 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 17 -0.01 18 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 18 -0.08 19 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 19 -0.04 20 PRO 21 A . ? PRO 21 A PRO 22 A ? PRO 22 A 20 -0.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 23 ? VAL A 28 ? GLN A 23 VAL A 28 A 2 THR A 34 ? VAL A 40 ? THR A 34 VAL A 40 A 3 SER A 80 ? VAL A 84 ? SER A 80 VAL A 84 B 1 HIS A 69 ? VAL A 71 ? HIS A 69 VAL A 71 B 2 ILE A 51 ? ALA A 60 ? ILE A 51 ALA A 60 B 3 GLU A 91 ? THR A 100 ? GLU A 91 THR A 100 B 4 VAL A 111 ? ARG A 114 ? VAL A 111 ARG A 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 28 ? N VAL A 28 O ARG A 36 ? O ARG A 36 A 2 3 N VAL A 35 ? N VAL A 35 O LEU A 83 ? O LEU A 83 B 1 2 O VAL A 71 ? O VAL A 71 N VAL A 56 ? N VAL A 56 B 2 3 N ALA A 57 ? N ALA A 57 O TRP A 95 ? O TRP A 95 B 3 4 N TYR A 92 ? N TYR A 92 O VAL A 113 ? O VAL A 113 # _database_PDB_matrix.entry_id 2EDX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EDX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 TRP 81 81 81 TRP TRP A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 TRP 89 89 89 TRP TRP A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 TRP 95 95 95 TRP TRP A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 HIS 99 99 99 HIS HIS A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 GLY 134 134 134 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -161.53 114.53 2 1 ALA A 14 ? ? -36.13 145.14 3 1 GLN A 15 ? ? -107.71 -62.39 4 1 SER A 46 ? ? -117.61 57.73 5 1 ASP A 116 ? ? -49.14 159.41 6 1 PRO A 120 ? ? -69.81 3.36 7 1 GLU A 128 ? ? -173.72 143.77 8 1 PRO A 131 ? ? -69.74 -174.12 9 2 GLU A 10 ? ? -170.07 132.25 10 2 LYS A 24 ? ? 34.21 44.53 11 2 PRO A 43 ? ? -69.73 87.23 12 2 ASP A 45 ? ? -56.63 107.20 13 2 ARG A 47 ? ? -55.08 -175.35 14 2 THR A 115 ? ? -49.45 162.67 15 2 PRO A 120 ? ? -69.69 3.32 16 2 PRO A 131 ? ? -69.77 -176.21 17 3 ALA A 14 ? ? -54.39 -177.22 18 3 PRO A 120 ? ? -69.70 3.58 19 3 PRO A 124 ? ? -69.77 -176.41 20 3 PRO A 131 ? ? -69.78 -178.27 21 3 SER A 132 ? ? -96.44 -62.25 22 4 ALA A 14 ? ? -58.49 -176.80 23 4 SER A 19 ? ? -98.93 -62.20 24 4 PRO A 43 ? ? -69.73 -168.68 25 4 SER A 46 ? ? -102.51 47.70 26 4 PRO A 120 ? ? -69.81 3.09 27 4 ARG A 125 ? ? -35.49 145.83 28 4 LYS A 126 ? ? -36.12 148.50 29 4 GLU A 128 ? ? -47.76 151.77 30 4 SER A 129 ? ? -42.11 107.87 31 4 SER A 133 ? ? -43.37 152.78 32 5 ILE A 9 ? ? -54.01 105.39 33 5 ARG A 12 ? ? -174.41 117.66 34 5 PRO A 43 ? ? -69.80 -176.24 35 5 THR A 115 ? ? -49.74 162.72 36 5 PRO A 120 ? ? -69.72 3.30 37 5 PRO A 131 ? ? -69.75 -178.30 38 6 THR A 8 ? ? -47.93 160.64 39 6 PRO A 104 ? ? -69.75 -179.42 40 6 PRO A 120 ? ? -69.74 3.68 41 6 LYS A 126 ? ? -49.79 87.34 42 7 SER A 19 ? ? -103.07 -61.73 43 7 VAL A 25 ? ? -59.53 107.63 44 7 ARG A 47 ? ? -57.29 179.06 45 7 ILE A 51 ? ? -62.47 92.76 46 7 ASP A 116 ? ? -38.49 154.50 47 7 PRO A 120 ? ? -69.80 2.26 48 8 THR A 8 ? ? -38.01 139.99 49 8 THR A 13 ? ? -94.35 59.60 50 8 LYS A 24 ? ? 31.69 46.37 51 8 THR A 115 ? ? -48.19 165.91 52 8 PRO A 120 ? ? -69.75 3.33 53 8 SER A 121 ? ? -42.82 165.83 54 8 PRO A 124 ? ? -69.79 -171.76 55 8 VAL A 127 ? ? -96.02 43.18 56 9 SER A 2 ? ? 34.94 50.84 57 9 SER A 5 ? ? -127.77 -53.72 58 9 ALA A 14 ? ? -48.39 175.26 59 9 PRO A 104 ? ? -69.74 -170.68 60 9 ASP A 116 ? ? -48.70 151.20 61 9 PRO A 120 ? ? -69.75 3.40 62 9 SER A 132 ? ? -37.01 135.19 63 10 SER A 3 ? ? -35.14 149.84 64 10 SER A 6 ? ? -36.42 119.40 65 10 ILE A 9 ? ? -37.49 148.37 66 10 SER A 19 ? ? -106.48 -61.96 67 10 LYS A 24 ? ? 38.12 36.59 68 10 VAL A 40 ? ? -39.09 136.81 69 10 PRO A 120 ? ? -69.74 3.77 70 10 ARG A 125 ? ? -56.70 91.71 71 10 GLU A 128 ? ? 34.59 39.88 72 10 SER A 129 ? ? -174.26 -179.53 73 10 PRO A 131 ? ? -69.72 1.95 74 10 SER A 132 ? ? -38.37 119.32 75 11 ILE A 9 ? ? -51.37 -175.66 76 11 PRO A 120 ? ? -69.70 3.31 77 11 SER A 121 ? ? -35.38 126.82 78 11 PRO A 131 ? ? -69.76 94.36 79 12 THR A 13 ? ? -127.11 -63.98 80 12 GLN A 15 ? ? -90.41 -74.19 81 12 LYS A 24 ? ? 36.72 50.86 82 12 PRO A 106 ? ? -69.81 -165.58 83 12 PRO A 120 ? ? -69.74 3.54 84 12 PRO A 124 ? ? -69.71 91.11 85 12 VAL A 127 ? ? -38.05 108.96 86 13 ALA A 14 ? ? -174.09 -177.85 87 13 LYS A 24 ? ? 38.88 39.84 88 13 ALA A 44 ? ? -79.58 45.09 89 13 THR A 115 ? ? -44.17 160.05 90 13 PRO A 120 ? ? -69.73 3.24 91 13 LYS A 126 ? ? 73.55 53.64 92 14 THR A 8 ? ? -34.11 119.91 93 14 ILE A 9 ? ? -45.42 164.38 94 14 SER A 19 ? ? -103.15 -61.81 95 14 PRO A 43 ? ? -69.71 -165.43 96 14 ASP A 45 ? ? -133.51 -74.84 97 14 ASN A 48 ? ? 33.60 34.44 98 14 GLU A 107 ? ? -57.54 -178.12 99 14 THR A 115 ? ? -46.94 155.32 100 14 PRO A 120 ? ? -69.83 4.92 101 14 SER A 121 ? ? -31.49 -39.46 102 14 PRO A 124 ? ? -69.81 -176.56 103 15 SER A 5 ? ? -169.73 111.45 104 15 SER A 6 ? ? -68.00 89.04 105 15 SER A 19 ? ? -120.02 -69.45 106 15 LYS A 24 ? ? 36.62 43.71 107 15 PRO A 43 ? ? -69.71 -171.44 108 15 SER A 46 ? ? -111.23 57.19 109 15 GLU A 107 ? ? -69.74 -178.28 110 15 SER A 109 ? ? -59.43 109.91 111 15 PRO A 120 ? ? -69.74 3.29 112 15 VAL A 127 ? ? -40.24 155.24 113 16 SER A 5 ? ? -67.66 92.19 114 16 SER A 16 ? ? -115.75 -74.95 115 16 SER A 19 ? ? -102.40 -70.27 116 16 PRO A 43 ? ? -69.85 -171.21 117 16 SER A 46 ? ? 34.08 54.05 118 16 PRO A 106 ? ? -69.74 -179.19 119 16 PRO A 120 ? ? -69.74 3.25 120 17 THR A 8 ? ? -103.74 74.46 121 17 THR A 13 ? ? -34.24 98.22 122 17 ALA A 14 ? ? -47.58 159.57 123 17 THR A 17 ? ? -44.99 151.91 124 17 SER A 19 ? ? -106.71 -67.87 125 17 VAL A 25 ? ? -59.36 109.82 126 17 ALA A 44 ? ? -38.27 -36.66 127 17 ILE A 51 ? ? -41.25 91.45 128 17 PRO A 120 ? ? -69.71 3.18 129 17 VAL A 127 ? ? -53.12 108.25 130 18 SER A 19 ? ? -102.95 -64.29 131 18 VAL A 25 ? ? -59.74 107.89 132 18 PRO A 43 ? ? -69.69 0.96 133 18 ALA A 44 ? ? 71.41 36.93 134 18 ARG A 47 ? ? -39.13 146.40 135 18 PRO A 120 ? ? -69.77 3.84 136 18 PRO A 124 ? ? -69.79 14.00 137 18 ARG A 125 ? ? -53.51 172.16 138 19 ARG A 12 ? ? -39.45 131.75 139 19 GLN A 15 ? ? -96.05 -61.13 140 19 PRO A 104 ? ? -69.79 -169.58 141 19 PRO A 120 ? ? -69.84 4.22 142 19 PRO A 124 ? ? -69.76 13.50 143 20 ALA A 11 ? ? -65.98 96.88 144 20 THR A 13 ? ? -36.57 132.45 145 20 GLN A 15 ? ? -131.35 -32.21 146 20 SER A 16 ? ? -132.02 -50.49 147 20 SER A 19 ? ? -108.11 -69.10 148 20 ARG A 47 ? ? -172.32 136.85 149 20 GLN A 53 ? ? -174.83 149.09 150 20 PRO A 120 ? ? -69.69 3.32 151 20 ARG A 125 ? ? -46.08 156.12 152 20 SER A 133 ? ? -100.93 42.01 #