data_2HOL # _entry.id 2HOL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HOL pdb_00002hol 10.2210/pdb2hol/pdb NDB UR0101 ? ? RCSB RCSB038581 ? ? WWPDB D_1000038581 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-19 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_symmetry' 31 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_symmetry' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2HOL _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HOJ 'Mn, 2.5 Ang resolution, TPP' unspecified PDB 2HOK 'Ca, 3.2 Ang resolution, TPP' unspecified PDB 2HOM '2.85 Ang resolution, TPS' unspecified PDB 2HOO '3.0 Ang resolution, BzTP (BENFOTIAMINE)' unspecified PDB 2HOP '2.5 Ang resolution, pyrithiamine' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Edwards, T.E.' 1 ;Ferre-D'Amare, A.R. ; 2 # _citation.id primary _citation.title 'Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1459 _citation.page_last 1468 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16962976 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.07.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Edwards, T.E.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thi-box riboswitch' 26798.936 1 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 9 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 non-polymer syn 'THIAMINE DIPHOSPHATE' 425.314 1 ? ? ? ? 6 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 'CALCIUM ION' CA 4 'MAGNESIUM ION' MG 5 'THIAMINE DIPHOSPHATE' TPP 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;in vitro T7 RNA polymerase with 5'cis-hammerhead ribozyme and 5'-trans VS ribozyme ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TPP non-polymer . 'THIAMINE DIPHOSPHATE' ? 'C12 H19 N4 O7 P2 S 1' 425.314 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 9 G G A . n A 1 2 C 2 10 10 C C A . n A 1 3 G 3 11 11 G G A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 ? ? ? A . n A 1 19 C 19 27 ? ? ? A . n A 1 20 U 20 28 ? ? ? A . n A 1 21 G 21 29 ? ? ? A . n A 1 22 C 22 30 30 C C A . n A 1 23 G 23 31 31 G G A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 53 A A A . n A 1 46 U 46 54 54 U U A . n A 1 47 C 47 55 55 C C A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A 83 91 91 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA 1 106 106 BA BA A . C 2 BA 1 107 107 BA BA A . D 2 BA 1 108 108 BA BA A . E 2 BA 1 109 109 BA BA A . F 2 BA 1 110 110 BA BA A . G 2 BA 1 111 111 BA BA A . H 2 BA 1 112 112 BA BA A . I 2 BA 1 113 113 BA BA A . J 2 BA 1 114 114 BA BA A . K 3 CA 1 115 115 CA CA A . L 3 CA 1 116 116 CA CA A . M 3 CA 1 117 117 CA CA A . N 3 CA 1 118 118 CA CA A . O 4 MG 1 119 119 MG MG A . P 5 TPP 1 105 105 TPP TPP A . Q 6 HOH 1 92 92 HOH HOH A . Q 6 HOH 2 93 93 HOH HOH A . Q 6 HOH 3 94 94 HOH HOH A . Q 6 HOH 4 95 95 HOH HOH A . Q 6 HOH 5 96 96 HOH HOH A . Q 6 HOH 6 97 97 HOH HOH A . Q 6 HOH 7 98 98 HOH HOH A . Q 6 HOH 8 99 99 HOH HOH A . Q 6 HOH 9 100 100 HOH HOH A . Q 6 HOH 10 101 101 HOH HOH A . Q 6 HOH 11 102 102 HOH HOH A . Q 6 HOH 12 103 103 HOH HOH A . Q 6 HOH 13 104 104 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 46 ? N1 ? A U 38 N1 2 1 Y 1 A U 46 ? C2 ? A U 38 C2 3 1 Y 1 A U 46 ? O2 ? A U 38 O2 4 1 Y 1 A U 46 ? N3 ? A U 38 N3 5 1 Y 1 A U 46 ? C4 ? A U 38 C4 6 1 Y 1 A U 46 ? O4 ? A U 38 O4 7 1 Y 1 A U 46 ? C5 ? A U 38 C5 8 1 Y 1 A U 46 ? C6 ? A U 38 C6 9 1 Y 1 A U 54 ? N1 ? A U 46 N1 10 1 Y 1 A U 54 ? C2 ? A U 46 C2 11 1 Y 1 A U 54 ? O2 ? A U 46 O2 12 1 Y 1 A U 54 ? N3 ? A U 46 N3 13 1 Y 1 A U 54 ? C4 ? A U 46 C4 14 1 Y 1 A U 54 ? O4 ? A U 46 O4 15 1 Y 1 A U 54 ? C5 ? A U 46 C5 16 1 Y 1 A U 54 ? C6 ? A U 46 C6 17 1 Y 1 A C 55 ? N1 ? A C 47 N1 18 1 Y 1 A C 55 ? C2 ? A C 47 C2 19 1 Y 1 A C 55 ? O2 ? A C 47 O2 20 1 Y 1 A C 55 ? N3 ? A C 47 N3 21 1 Y 1 A C 55 ? C4 ? A C 47 C4 22 1 Y 1 A C 55 ? N4 ? A C 47 N4 23 1 Y 1 A C 55 ? C5 ? A C 47 C5 24 1 Y 1 A C 55 ? C6 ? A C 47 C6 25 1 Y 1 A U 79 ? N1 ? A U 71 N1 26 1 Y 1 A U 79 ? C2 ? A U 71 C2 27 1 Y 1 A U 79 ? O2 ? A U 71 O2 28 1 Y 1 A U 79 ? N3 ? A U 71 N3 29 1 Y 1 A U 79 ? C4 ? A U 71 C4 30 1 Y 1 A U 79 ? O4 ? A U 71 O4 31 1 Y 1 A U 79 ? C5 ? A U 71 C5 32 1 Y 1 A U 79 ? C6 ? A U 71 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 2HOL _cell.length_a 65.500 _cell.length_b 65.500 _cell.length_c 101.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HOL _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 153 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2HOL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details ;growth: 23% PEG 3350, 0.2 M NH4Cl, 10 mM CaCl2, 50 mM Cacodylate; 0.25 mM TPP, 0.25 mM spermine, 50 mM KCl, 1.5 mM MgCl2; soaked in 60 mM BaCl2 for 7 days; cryo above with 20% w/v sucrose and 26% PEG 2000 rather than 3350, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K, pH 6.00 ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 3350' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 NH4Cl ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 KCl ? ? ? 1 6 1 sucrose ? ? ? 1 7 1 spermine ? ? ? 1 8 1 cacodylate ? ? ? 1 9 1 TPP ? ? ? 1 10 2 'PEG 3350' ? ? ? 1 11 2 CaCl2 ? ? ? 1 12 2 NH4Cl ? ? ? 1 13 2 MgCl2 ? ? ? 1 14 2 KCl ? ? ? 1 15 2 sucrose ? ? ? 1 16 3 BaCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2005-10-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2HOL _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.900 _reflns.number_obs 5517 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.300 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.457 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.800 _reflns_shell.pdbx_redundancy 11.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HOL _refine.ls_number_reflns_obs 5517 _refine.ls_number_reflns_all 5714 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 96.6 _refine.ls_R_factor_obs 0.21 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21 _refine.ls_R_factor_R_free 0.244 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 596 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.30 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HOL _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.33 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.20 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1658 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 1711 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.31 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2HOL _struct.title 'Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HOL _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA; riboswitch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 5 ? Q N N 6 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2HOL _struct_ref.pdbx_db_accession 2HOL _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HOL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2HOL _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 91 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 13 N3 ? ? ? 1_555 O MG . MG ? ? A G 21 A MG 119 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc2 metalc ? ? A G 13 "O2'" ? ? ? 1_555 O MG . MG ? ? A G 21 A MG 119 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc3 metalc ? ? A G 28 O6 ? ? ? 1_555 H BA . BA ? ? A G 36 A BA 112 1_555 ? ? ? ? ? ? ? 3.673 ? ? metalc4 metalc ? ? A G 28 N7 ? ? ? 1_555 H BA . BA ? ? A G 36 A BA 112 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc5 metalc ? ? A G 32 O6 ? ? ? 1_555 F BA . BA ? ? A G 40 A BA 110 1_555 ? ? ? ? ? ? ? 3.584 ? ? metalc6 metalc ? ? A G 32 N7 ? ? ? 1_555 F BA . BA ? ? A G 40 A BA 110 1_555 ? ? ? ? ? ? ? 2.489 ? ? metalc7 metalc ? ? A G 32 O6 ? ? ? 1_555 J BA . BA ? ? A G 40 A BA 114 1_555 ? ? ? ? ? ? ? 2.914 ? ? metalc8 metalc ? ? A A 33 N7 ? ? ? 1_555 E BA . BA ? ? A A 41 A BA 109 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc9 metalc ? ? A A 35 OP2 ? ? ? 1_555 J BA . BA ? ? A A 43 A BA 114 1_555 ? ? ? ? ? ? ? 2.952 ? ? metalc10 metalc ? ? A U 51 O4 ? ? ? 1_555 C BA . BA ? ? A U 59 A BA 107 1_555 ? ? ? ? ? ? ? 3.724 ? ? metalc11 metalc ? ? A G 52 O6 ? ? ? 1_555 C BA . BA ? ? A G 60 A BA 107 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc12 metalc ? ? A G 52 N1 ? ? ? 1_555 C BA . BA ? ? A G 60 A BA 107 1_555 ? ? ? ? ? ? ? 3.702 ? ? metalc13 metalc ? ? A C 55 OP1 ? ? ? 1_555 D BA . BA ? ? A C 63 A BA 108 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc14 metalc ? ? A U 56 OP2 ? ? ? 1_555 D BA . BA ? ? A U 64 A BA 108 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc15 metalc ? ? A U 56 OP1 ? ? ? 5_656 D BA . BA ? ? A U 64 A BA 108 1_555 ? ? ? ? ? ? ? 2.239 ? ? metalc16 metalc ? ? A G 58 N7 ? ? ? 1_555 I BA . BA ? ? A G 66 A BA 113 1_555 ? ? ? ? ? ? ? 3.671 ? ? metalc17 metalc ? ? A G 58 OP1 ? ? ? 5_656 N CA . CA ? ? A G 66 A CA 118 1_555 ? ? ? ? ? ? ? 2.735 ? ? metalc18 metalc ? ? A A 61 OP1 ? ? ? 1_555 K CA . CA ? ? A A 69 A CA 115 1_555 ? ? ? ? ? ? ? 2.244 ? ? metalc19 metalc ? ? A A 61 N7 ? ? ? 6_566 L CA . CA ? ? A A 69 A CA 116 1_555 ? ? ? ? ? ? ? 2.465 ? ? metalc20 metalc ? ? A U 63 "O2'" ? ? ? 1_555 O MG . MG ? ? A U 71 A MG 119 1_555 ? ? ? ? ? ? ? 2.766 ? ? metalc21 metalc ? ? A C 65 OP1 ? ? ? 1_555 O MG . MG ? ? A C 73 A MG 119 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc22 metalc ? ? A G 70 O6 ? ? ? 1_555 C BA . BA ? ? A G 78 A BA 107 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc23 metalc ? ? A A 72 OP2 ? ? ? 1_555 G BA . BA ? ? A A 80 A BA 111 1_555 ? ? ? ? ? ? ? 3.242 ? ? metalc24 metalc ? ? A A 83 "O3'" ? ? ? 6_566 K CA . CA ? ? A A 91 A CA 115 1_555 ? ? ? ? ? ? ? 3.310 ? ? metalc25 metalc ? ? A A 83 OP2 ? ? ? 1_555 L CA . CA ? ? A A 91 A CA 116 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc26 metalc ? ? Q HOH . O ? ? ? 1_555 H BA . BA ? ? A HOH 95 A BA 112 1_555 ? ? ? ? ? ? ? 2.966 ? ? metalc27 metalc ? ? Q HOH . O ? ? ? 1_555 C BA . BA ? ? A HOH 96 A BA 107 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc28 metalc ? ? Q HOH . O ? ? ? 1_555 C BA . BA ? ? A HOH 97 A BA 107 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc29 metalc ? ? Q HOH . O ? ? ? 1_555 B BA . BA ? ? A HOH 98 A BA 106 1_555 ? ? ? ? ? ? ? 3.209 ? ? metalc30 metalc ? ? Q HOH . O ? ? ? 1_555 C BA . BA ? ? A HOH 99 A BA 107 1_555 ? ? ? ? ? ? ? 2.619 ? ? metalc31 metalc ? ? Q HOH . O ? ? ? 1_555 D BA . BA ? ? A HOH 101 A BA 108 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc32 metalc ? ? Q HOH . O ? ? ? 1_555 B BA . BA ? ? A HOH 102 A BA 106 1_555 ? ? ? ? ? ? ? 2.558 ? ? metalc33 metalc ? ? Q HOH . O ? ? ? 1_555 B BA . BA ? ? A HOH 104 A BA 106 1_555 ? ? ? ? ? ? ? 3.166 ? ? metalc34 metalc ? ? P TPP . O1B ? ? ? 1_555 B BA . BA ? ? A TPP 105 A BA 106 1_555 ? ? ? ? ? ? ? 1.898 ? ? metalc35 metalc ? ? P TPP . O2A ? ? ? 1_555 B BA . BA ? ? A TPP 105 A BA 106 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc36 metalc ? ? P TPP . O3A ? ? ? 1_555 C BA . BA ? ? A TPP 105 A BA 107 1_555 ? ? ? ? ? ? ? 3.519 ? ? metalc37 metalc ? ? P TPP . O2B ? ? ? 1_555 C BA . BA ? ? A TPP 105 A BA 107 1_555 ? ? ? ? ? ? ? 2.568 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog16 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 76 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog27 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog31 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog32 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog33 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog34 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 63 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog40 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 27 N6 ? ? A C 24 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog47 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 61 N1 ? ? A G 37 A A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog49 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A A 45 N7 ? ? ? 1_555 A A 76 N6 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog51 hydrog ? ? A A 48 N6 ? ? ? 1_555 A G 75 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog52 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog53 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 52 N1 ? ? ? 1_555 A G 70 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog62 hydrog ? ? A G 52 N2 ? ? ? 1_555 A G 70 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog63 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 69 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog64 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 119 ? 1_555 "O2'" ? A G 13 ? A G 21 ? 1_555 89.3 ? 2 N3 ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 119 ? 1_555 "O2'" ? A U 63 ? A U 71 ? 1_555 135.0 ? 3 "O2'" ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 119 ? 1_555 "O2'" ? A U 63 ? A U 71 ? 1_555 90.5 ? 4 N3 ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 119 ? 1_555 OP1 ? A C 65 ? A C 73 ? 1_555 115.6 ? 5 "O2'" ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 119 ? 1_555 OP1 ? A C 65 ? A C 73 ? 1_555 137.2 ? 6 "O2'" ? A U 63 ? A U 71 ? 1_555 MG ? O MG . ? A MG 119 ? 1_555 OP1 ? A C 65 ? A C 73 ? 1_555 94.0 ? 7 O6 ? A G 28 ? A G 36 ? 1_555 BA ? H BA . ? A BA 112 ? 1_555 N7 ? A G 28 ? A G 36 ? 1_555 55.1 ? 8 O6 ? A G 28 ? A G 36 ? 1_555 BA ? H BA . ? A BA 112 ? 1_555 O ? Q HOH . ? A HOH 95 ? 1_555 44.9 ? 9 N7 ? A G 28 ? A G 36 ? 1_555 BA ? H BA . ? A BA 112 ? 1_555 O ? Q HOH . ? A HOH 95 ? 1_555 93.4 ? 10 O6 ? A G 32 ? A G 40 ? 1_555 BA ? F BA . ? A BA 110 ? 1_555 N7 ? A G 32 ? A G 40 ? 1_555 57.9 ? 11 O6 ? A G 32 ? A G 40 ? 1_555 BA ? J BA . ? A BA 114 ? 1_555 OP2 ? A A 35 ? A A 43 ? 1_555 83.7 ? 12 O4 ? A U 51 ? A U 59 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O6 ? A G 52 ? A G 60 ? 1_555 57.3 ? 13 O4 ? A U 51 ? A U 59 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 N1 ? A G 52 ? A G 60 ? 1_555 61.8 ? 14 O6 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 N1 ? A G 52 ? A G 60 ? 1_555 34.2 ? 15 O4 ? A U 51 ? A U 59 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 64.7 ? 16 O6 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 80.9 ? 17 N1 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 49.6 ? 18 O4 ? A U 51 ? A U 59 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 96 ? 1_555 142.4 ? 19 O6 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 96 ? 1_555 86.3 ? 20 N1 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 96 ? 1_555 83.2 ? 21 O6 ? A G 70 ? A G 78 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 96 ? 1_555 103.7 ? 22 O4 ? A U 51 ? A U 59 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 97 ? 1_555 42.8 ? 23 O6 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 97 ? 1_555 85.3 ? 24 N1 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 97 ? 1_555 103.1 ? 25 O6 ? A G 70 ? A G 78 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 97 ? 1_555 99.4 ? 26 O ? Q HOH . ? A HOH 96 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 97 ? 1_555 153.8 ? 27 O4 ? A U 51 ? A U 59 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 99 ? 1_555 109.7 ? 28 O6 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 99 ? 1_555 89.0 ? 29 N1 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 99 ? 1_555 120.7 ? 30 O6 ? A G 70 ? A G 78 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 99 ? 1_555 169.9 ? 31 O ? Q HOH . ? A HOH 96 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 99 ? 1_555 75.4 ? 32 O ? Q HOH . ? A HOH 97 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O ? Q HOH . ? A HOH 99 ? 1_555 79.6 ? 33 O4 ? A U 51 ? A U 59 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O3A ? P TPP . ? A TPP 105 ? 1_555 116.1 ? 34 O6 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O3A ? P TPP . ? A TPP 105 ? 1_555 151.1 ? 35 N1 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O3A ? P TPP . ? A TPP 105 ? 1_555 173.2 ? 36 O6 ? A G 70 ? A G 78 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O3A ? P TPP . ? A TPP 105 ? 1_555 123.7 ? 37 O ? Q HOH . ? A HOH 96 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O3A ? P TPP . ? A TPP 105 ? 1_555 100.3 ? 38 O ? Q HOH . ? A HOH 97 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O3A ? P TPP . ? A TPP 105 ? 1_555 76.4 ? 39 O ? Q HOH . ? A HOH 99 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O3A ? P TPP . ? A TPP 105 ? 1_555 66.0 ? 40 O4 ? A U 51 ? A U 59 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O2B ? P TPP . ? A TPP 105 ? 1_555 116.2 ? 41 O6 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O2B ? P TPP . ? A TPP 105 ? 1_555 160.1 ? 42 N1 ? A G 52 ? A G 60 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O2B ? P TPP . ? A TPP 105 ? 1_555 126.1 ? 43 O6 ? A G 70 ? A G 78 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O2B ? P TPP . ? A TPP 105 ? 1_555 79.6 ? 44 O ? Q HOH . ? A HOH 96 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O2B ? P TPP . ? A TPP 105 ? 1_555 94.7 ? 45 O ? Q HOH . ? A HOH 97 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O2B ? P TPP . ? A TPP 105 ? 1_555 101.5 ? 46 O ? Q HOH . ? A HOH 99 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O2B ? P TPP . ? A TPP 105 ? 1_555 110.5 ? 47 O3A ? P TPP . ? A TPP 105 ? 1_555 BA ? C BA . ? A BA 107 ? 1_555 O2B ? P TPP . ? A TPP 105 ? 1_555 48.1 ? 48 OP1 ? A C 55 ? A C 63 ? 1_555 BA ? D BA . ? A BA 108 ? 1_555 OP2 ? A U 56 ? A U 64 ? 1_555 77.2 ? 49 OP1 ? A C 55 ? A C 63 ? 1_555 BA ? D BA . ? A BA 108 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 100.9 ? 50 OP2 ? A U 56 ? A U 64 ? 1_555 BA ? D BA . ? A BA 108 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 89.0 ? 51 OP1 ? A C 55 ? A C 63 ? 1_555 BA ? D BA . ? A BA 108 ? 1_555 O ? Q HOH . ? A HOH 101 ? 1_555 161.3 ? 52 OP2 ? A U 56 ? A U 64 ? 1_555 BA ? D BA . ? A BA 108 ? 1_555 O ? Q HOH . ? A HOH 101 ? 1_555 84.2 ? 53 OP1 ? A U 56 ? A U 64 ? 5_656 BA ? D BA . ? A BA 108 ? 1_555 O ? Q HOH . ? A HOH 101 ? 1_555 79.6 ? 54 OP1 ? A A 61 ? A A 69 ? 1_555 CA ? K CA . ? A CA 115 ? 1_555 "O3'" ? A A 83 ? A A 91 ? 6_566 106.4 ? 55 N7 ? A A 61 ? A A 69 ? 6_566 CA ? L CA . ? A CA 116 ? 1_555 OP2 ? A A 83 ? A A 91 ? 1_555 100.5 ? 56 O ? Q HOH . ? A HOH 98 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O ? Q HOH . ? A HOH 102 ? 1_555 79.8 ? 57 O ? Q HOH . ? A HOH 98 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O ? Q HOH . ? A HOH 104 ? 1_555 95.0 ? 58 O ? Q HOH . ? A HOH 102 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O ? Q HOH . ? A HOH 104 ? 1_555 95.2 ? 59 O ? Q HOH . ? A HOH 98 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O1B ? P TPP . ? A TPP 105 ? 1_555 111.7 ? 60 O ? Q HOH . ? A HOH 102 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O1B ? P TPP . ? A TPP 105 ? 1_555 90.2 ? 61 O ? Q HOH . ? A HOH 104 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O1B ? P TPP . ? A TPP 105 ? 1_555 153.3 ? 62 O ? Q HOH . ? A HOH 98 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O2A ? P TPP . ? A TPP 105 ? 1_555 156.5 ? 63 O ? Q HOH . ? A HOH 102 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O2A ? P TPP . ? A TPP 105 ? 1_555 112.6 ? 64 O ? Q HOH . ? A HOH 104 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O2A ? P TPP . ? A TPP 105 ? 1_555 103.3 ? 65 O1B ? P TPP . ? A TPP 105 ? 1_555 BA ? B BA . ? A BA 106 ? 1_555 O2A ? P TPP . ? A TPP 105 ? 1_555 50.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 106 ? 2 'BINDING SITE FOR RESIDUE BA A 106' AC2 Software A BA 107 ? 6 'BINDING SITE FOR RESIDUE BA A 107' AC3 Software A BA 108 ? 4 'BINDING SITE FOR RESIDUE BA A 108' AC4 Software A BA 109 ? 1 'BINDING SITE FOR RESIDUE BA A 109' AC5 Software A BA 110 ? 1 'BINDING SITE FOR RESIDUE BA A 110' AC6 Software A BA 111 ? 1 'BINDING SITE FOR RESIDUE BA A 111' AC7 Software A BA 112 ? 2 'BINDING SITE FOR RESIDUE BA A 112' AC8 Software A BA 113 ? 1 'BINDING SITE FOR RESIDUE BA A 113' AC9 Software A BA 114 ? 2 'BINDING SITE FOR RESIDUE BA A 114' BC1 Software A CA 115 ? 2 'BINDING SITE FOR RESIDUE CA A 115' BC2 Software A CA 116 ? 2 'BINDING SITE FOR RESIDUE CA A 116' BC3 Software A CA 118 ? 1 'BINDING SITE FOR RESIDUE CA A 118' BC4 Software A MG 119 ? 3 'BINDING SITE FOR RESIDUE MG A 119' BC5 Software A TPP 105 ? 15 'BINDING SITE FOR RESIDUE TPP A 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HOH Q . ? HOH A 102 . ? 1_555 ? 2 AC1 2 TPP P . ? TPP A 105 . ? 1_555 ? 3 AC2 6 G A 52 ? G A 60 . ? 1_555 ? 4 AC2 6 G A 70 ? G A 78 . ? 1_555 ? 5 AC2 6 HOH Q . ? HOH A 96 . ? 1_555 ? 6 AC2 6 HOH Q . ? HOH A 97 . ? 1_555 ? 7 AC2 6 HOH Q . ? HOH A 99 . ? 1_555 ? 8 AC2 6 TPP P . ? TPP A 105 . ? 1_555 ? 9 AC3 4 C A 55 ? C A 63 . ? 1_555 ? 10 AC3 4 U A 56 ? U A 64 . ? 5_656 ? 11 AC3 4 U A 56 ? U A 64 . ? 1_555 ? 12 AC3 4 HOH Q . ? HOH A 101 . ? 1_555 ? 13 AC4 1 A A 33 ? A A 41 . ? 1_555 ? 14 AC5 1 G A 32 ? G A 40 . ? 1_555 ? 15 AC6 1 A A 72 ? A A 80 . ? 1_555 ? 16 AC7 2 G A 28 ? G A 36 . ? 1_555 ? 17 AC7 2 HOH Q . ? HOH A 95 . ? 1_555 ? 18 AC8 1 G A 58 ? G A 66 . ? 1_555 ? 19 AC9 2 G A 32 ? G A 40 . ? 1_555 ? 20 AC9 2 A A 35 ? A A 43 . ? 1_555 ? 21 BC1 2 A A 61 ? A A 69 . ? 1_555 ? 22 BC1 2 A A 83 ? A A 91 . ? 6_566 ? 23 BC2 2 A A 61 ? A A 69 . ? 6_566 ? 24 BC2 2 A A 83 ? A A 91 . ? 1_555 ? 25 BC3 1 G A 58 ? G A 66 . ? 5_656 ? 26 BC4 3 G A 13 ? G A 21 . ? 1_555 ? 27 BC4 3 U A 63 ? U A 71 . ? 1_555 ? 28 BC4 3 C A 65 ? C A 73 . ? 1_555 ? 29 BC5 15 G A 11 ? G A 19 . ? 1_555 ? 30 BC5 15 U A 12 ? U A 20 . ? 1_555 ? 31 BC5 15 G A 32 ? G A 40 . ? 1_555 ? 32 BC5 15 G A 34 ? G A 42 . ? 1_555 ? 33 BC5 15 A A 35 ? A A 43 . ? 1_555 ? 34 BC5 15 C A 49 ? C A 57 . ? 1_555 ? 35 BC5 15 C A 50 ? C A 58 . ? 1_555 ? 36 BC5 15 G A 64 ? G A 72 . ? 1_555 ? 37 BC5 15 C A 65 ? C A 73 . ? 1_555 ? 38 BC5 15 C A 69 ? C A 77 . ? 1_555 ? 39 BC5 15 G A 70 ? G A 78 . ? 1_555 ? 40 BC5 15 HOH Q . ? HOH A 99 . ? 1_555 ? 41 BC5 15 HOH Q . ? HOH A 100 . ? 1_555 ? 42 BC5 15 BA B . ? BA A 106 . ? 1_555 ? 43 BC5 15 BA C . ? BA A 107 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N2 A G 31 ? ? 1_555 N2 A G 31 ? ? 5_556 1.92 2 1 O6 A G 31 ? ? 1_555 O6 A G 31 ? ? 5_556 1.99 3 1 N1 A G 31 ? ? 1_555 N1 A G 31 ? ? 5_556 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A A 44 ? ? "C3'" A A 44 ? ? "O3'" A A 44 ? ? 127.58 113.70 13.88 1.60 N 2 1 "C2'" A G 78 ? ? "C3'" A G 78 ? ? "O3'" A G 78 ? ? 125.47 113.70 11.77 1.60 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 26 ? A U 18 2 1 Y 1 A C 27 ? A C 19 3 1 Y 1 A U 28 ? A U 20 4 1 Y 1 A G 29 ? A G 21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BA BA BA N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 CA CA CA N N 74 G OP3 O N N 75 G P P N N 76 G OP1 O N N 77 G OP2 O N N 78 G "O5'" O N N 79 G "C5'" C N N 80 G "C4'" C N R 81 G "O4'" O N N 82 G "C3'" C N S 83 G "O3'" O N N 84 G "C2'" C N R 85 G "O2'" O N N 86 G "C1'" C N R 87 G N9 N Y N 88 G C8 C Y N 89 G N7 N Y N 90 G C5 C Y N 91 G C6 C N N 92 G O6 O N N 93 G N1 N N N 94 G C2 C N N 95 G N2 N N N 96 G N3 N N N 97 G C4 C Y N 98 G HOP3 H N N 99 G HOP2 H N N 100 G "H5'" H N N 101 G "H5''" H N N 102 G "H4'" H N N 103 G "H3'" H N N 104 G "HO3'" H N N 105 G "H2'" H N N 106 G "HO2'" H N N 107 G "H1'" H N N 108 G H8 H N N 109 G H1 H N N 110 G H21 H N N 111 G H22 H N N 112 HOH O O N N 113 HOH H1 H N N 114 HOH H2 H N N 115 MG MG MG N N 116 TPP "N1'" N Y N 117 TPP "C2'" C Y N 118 TPP CM2 C N N 119 TPP "N3'" N Y N 120 TPP "C4'" C Y N 121 TPP "N4'" N N N 122 TPP "C5'" C Y N 123 TPP "C6'" C Y N 124 TPP "C7'" C N N 125 TPP N3 N Y N 126 TPP C2 C Y N 127 TPP S1 S Y N 128 TPP C5 C Y N 129 TPP C4 C Y N 130 TPP CM4 C N N 131 TPP C6 C N N 132 TPP C7 C N N 133 TPP O7 O N N 134 TPP PA P N S 135 TPP O1A O N N 136 TPP O2A O N N 137 TPP O3A O N N 138 TPP PB P N N 139 TPP O1B O N N 140 TPP O2B O N N 141 TPP O3B O N N 142 TPP HM21 H N N 143 TPP HM22 H N N 144 TPP HM23 H N N 145 TPP HN41 H N N 146 TPP HN42 H N N 147 TPP "H6'" H N N 148 TPP "H7'1" H N N 149 TPP "H7'2" H N N 150 TPP H2 H N N 151 TPP HM41 H N N 152 TPP HM42 H N N 153 TPP HM43 H N N 154 TPP H61 H N N 155 TPP H62 H N N 156 TPP H71 H N N 157 TPP H72 H N N 158 TPP HOA2 H N N 159 TPP HOB2 H N N 160 TPP HOB3 H N N 161 U OP3 O N N 162 U P P N N 163 U OP1 O N N 164 U OP2 O N N 165 U "O5'" O N N 166 U "C5'" C N N 167 U "C4'" C N R 168 U "O4'" O N N 169 U "C3'" C N S 170 U "O3'" O N N 171 U "C2'" C N R 172 U "O2'" O N N 173 U "C1'" C N R 174 U N1 N N N 175 U C2 C N N 176 U O2 O N N 177 U N3 N N N 178 U C4 C N N 179 U O4 O N N 180 U C5 C N N 181 U C6 C N N 182 U HOP3 H N N 183 U HOP2 H N N 184 U "H5'" H N N 185 U "H5''" H N N 186 U "H4'" H N N 187 U "H3'" H N N 188 U "HO3'" H N N 189 U "H2'" H N N 190 U "HO2'" H N N 191 U "H1'" H N N 192 U H3 H N N 193 U H5 H N N 194 U H6 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 TPP "N1'" "C2'" doub Y N 118 TPP "N1'" "C6'" sing Y N 119 TPP "C2'" CM2 sing N N 120 TPP "C2'" "N3'" sing Y N 121 TPP CM2 HM21 sing N N 122 TPP CM2 HM22 sing N N 123 TPP CM2 HM23 sing N N 124 TPP "N3'" "C4'" doub Y N 125 TPP "C4'" "N4'" sing N N 126 TPP "C4'" "C5'" sing Y N 127 TPP "N4'" HN41 sing N N 128 TPP "N4'" HN42 sing N N 129 TPP "C5'" "C6'" doub Y N 130 TPP "C5'" "C7'" sing N N 131 TPP "C6'" "H6'" sing N N 132 TPP "C7'" N3 sing N N 133 TPP "C7'" "H7'1" sing N N 134 TPP "C7'" "H7'2" sing N N 135 TPP N3 C2 doub Y N 136 TPP N3 C4 sing Y N 137 TPP C2 S1 sing Y N 138 TPP C2 H2 sing N N 139 TPP S1 C5 sing Y N 140 TPP C5 C4 doub Y N 141 TPP C5 C6 sing N N 142 TPP C4 CM4 sing N N 143 TPP CM4 HM41 sing N N 144 TPP CM4 HM42 sing N N 145 TPP CM4 HM43 sing N N 146 TPP C6 C7 sing N N 147 TPP C6 H61 sing N N 148 TPP C6 H62 sing N N 149 TPP C7 O7 sing N N 150 TPP C7 H71 sing N N 151 TPP C7 H72 sing N N 152 TPP O7 PA sing N N 153 TPP PA O1A doub N N 154 TPP PA O2A sing N N 155 TPP PA O3A sing N N 156 TPP O2A HOA2 sing N N 157 TPP O3A PB sing N N 158 TPP PB O1B doub N N 159 TPP PB O2B sing N N 160 TPP PB O3B sing N N 161 TPP O2B HOB2 sing N N 162 TPP O3B HOB3 sing N N 163 U OP3 P sing N N 164 U OP3 HOP3 sing N N 165 U P OP1 doub N N 166 U P OP2 sing N N 167 U P "O5'" sing N N 168 U OP2 HOP2 sing N N 169 U "O5'" "C5'" sing N N 170 U "C5'" "C4'" sing N N 171 U "C5'" "H5'" sing N N 172 U "C5'" "H5''" sing N N 173 U "C4'" "O4'" sing N N 174 U "C4'" "C3'" sing N N 175 U "C4'" "H4'" sing N N 176 U "O4'" "C1'" sing N N 177 U "C3'" "O3'" sing N N 178 U "C3'" "C2'" sing N N 179 U "C3'" "H3'" sing N N 180 U "O3'" "HO3'" sing N N 181 U "C2'" "O2'" sing N N 182 U "C2'" "C1'" sing N N 183 U "C2'" "H2'" sing N N 184 U "O2'" "HO2'" sing N N 185 U "C1'" N1 sing N N 186 U "C1'" "H1'" sing N N 187 U N1 C2 sing N N 188 U N1 C6 sing N N 189 U C2 O2 doub N N 190 U C2 N3 sing N N 191 U N3 C4 sing N N 192 U N3 H3 sing N N 193 U C4 O4 doub N N 194 U C4 C5 sing N N 195 U C5 C6 doub N N 196 U C5 H5 sing N N 197 U C6 H6 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HOL 'double helix' 2HOL 'a-form double helix' 2HOL 'hairpin loop' 2HOL 'bulge loop' 2HOL 'mismatched base pair' 2HOL 'internal loop' 2HOL 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 82 1_555 -0.054 -0.067 0.551 10.739 -9.524 0.247 1 A_G9:C90_A A 9 ? A 90 ? 19 1 1 A C 2 1_555 A G 81 1_555 -0.074 -0.231 -0.078 6.548 -18.862 -1.894 2 A_C10:G89_A A 10 ? A 89 ? 19 1 1 A G 3 1_555 A C 80 1_555 -0.135 -0.210 0.163 1.030 -6.075 0.486 3 A_G11:C88_A A 11 ? A 88 ? 19 1 1 A A 4 1_555 A U 79 1_555 0.363 0.013 0.113 -2.914 -17.040 2.635 4 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.675 -0.084 0.362 1.044 -17.906 3.192 5 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 6 1_555 A A 77 1_555 0.374 0.159 0.430 -8.510 -12.307 10.756 6 A_U14:A85_A A 14 ? A 85 ? ? 1 1 A C 7 1_555 A G 43 1_555 -0.088 -0.284 0.221 3.878 -13.836 -3.663 7 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 -0.083 -0.243 0.122 0.266 -10.145 2.904 8 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 -0.702 -0.205 0.342 -11.966 -8.322 5.960 9 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 10 1_555 A C 40 1_555 -0.179 -0.198 0.255 -11.370 -17.878 -3.294 10 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 -0.790 1.474 -0.274 -0.613 -18.839 -21.884 11 A_G19:A47_A A 19 ? A 47 ? 8 ? 1 A U 12 1_555 A A 37 1_555 0.567 -0.103 -0.436 21.129 12.724 -2.958 12 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A A 27 1_555 A C 16 1_555 -4.628 -1.197 -0.093 -2.590 -8.217 8.920 13 A_A35:C24_A A 35 ? A 24 ? ? 1 1 A G 28 1_555 A C 15 1_555 -0.907 -0.138 0.039 2.103 -13.627 8.377 14 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 -1.147 -0.053 -0.220 -6.270 0.183 5.559 15 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 0.943 -0.102 0.778 -13.055 5.455 -6.561 16 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 31 1_555 A A 35 1_555 4.159 -2.240 0.838 6.938 16.285 -93.851 17 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 45 1_555 A A 76 1_555 5.679 -5.704 0.641 -21.856 22.003 165.112 18 A_A53:A84_A A 53 ? A 84 ? ? ? 1 A A 48 1_555 A G 75 1_555 -6.697 -4.706 0.209 11.524 -21.329 -15.062 19 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 49 1_555 A G 74 1_555 1.344 -0.204 -0.254 14.821 -22.337 2.099 20 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 0.341 -0.578 0.304 -2.320 -9.936 -5.846 21 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 0.206 -0.102 0.028 -11.946 -8.729 0.024 22 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 A G 70 1_555 1.312 3.448 0.395 -8.050 0.057 -96.047 23 A_G60:G78_A A 60 ? A 78 ? 6 ? 1 A A 53 1_555 A C 69 1_555 -2.042 2.440 -0.468 -4.447 -16.465 107.750 24 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 55 1_555 A G 68 1_555 0.594 -0.091 0.161 8.937 -13.094 1.795 25 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 56 1_555 A A 67 1_555 -0.700 0.120 -0.267 8.393 -14.120 6.817 26 A_U64:A75_A A 64 ? A 75 ? 20 1 1 A G 57 1_555 A C 66 1_555 -0.263 -0.171 0.034 1.445 -4.727 4.725 27 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 58 1_555 A C 65 1_555 -0.433 -0.331 -0.655 -10.909 -14.860 3.442 28 A_G66:C73_A A 66 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 82 1_555 A C 2 1_555 A G 81 1_555 0.138 -1.304 3.453 5.104 3.235 35.217 -2.613 0.543 3.311 5.298 -8.360 35.716 1 AA_G9C10:G89C90_AA A 9 ? A 90 ? A 10 ? A 89 ? 1 A C 2 1_555 A G 81 1_555 A G 3 1_555 A C 80 1_555 0.435 -1.728 3.431 -2.449 5.027 31.012 -4.124 -1.259 3.077 9.307 4.534 31.500 2 AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 1 A G 3 1_555 A C 80 1_555 A A 4 1_555 A U 79 1_555 -0.050 -1.260 3.209 1.073 5.523 32.728 -3.086 0.258 2.960 9.711 -1.886 33.195 3 AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 -0.325 -1.208 3.100 -2.982 3.054 35.825 -2.357 0.129 3.007 4.943 4.827 36.070 4 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 0.514 -0.780 3.341 3.016 5.027 32.246 -2.258 -0.386 3.219 8.958 -5.375 32.761 5 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 0.622 -0.803 2.892 0.561 2.660 39.021 -1.480 -0.871 2.841 3.977 -0.838 39.112 6 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 1.230 -2.040 3.281 -0.284 6.413 30.763 -4.897 -2.323 2.798 11.926 0.528 31.410 7 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.364 -1.816 3.444 -0.716 3.821 32.910 -3.842 0.516 3.225 6.716 1.258 33.133 8 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 -0.247 -1.610 3.167 4.358 7.266 32.621 -3.858 1.074 2.701 12.672 -7.599 33.674 9 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.214 -0.856 3.029 7.151 0.898 31.930 -1.656 3.246 2.677 1.607 -12.796 32.713 10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 -0.053 0.500 2.960 3.192 14.865 11.394 -6.053 1.786 2.164 52.168 -11.201 18.979 11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 0.201 -0.907 3.278 -6.944 8.240 43.331 -1.933 -0.887 3.001 10.958 9.234 44.588 12 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.603 -1.844 3.379 -5.981 6.938 32.892 -4.239 0.085 3.000 11.966 10.316 34.110 13 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.774 -1.745 3.644 -3.260 4.374 45.629 -2.650 0.682 3.516 5.616 4.185 45.937 14 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -3.185 -1.239 2.765 11.881 2.766 63.014 -1.259 3.391 2.146 2.621 -11.255 64.064 15 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 45 1_555 A A 76 1_555 A A 48 1_555 A G 75 1_555 -2.383 -2.041 -0.461 149.033 -84.029 23.918 -1.344 0.627 -1.146 -43.748 -77.592 171.283 16 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 1.320 -0.567 3.530 -0.356 8.589 70.674 -0.803 -1.148 3.445 7.398 0.307 71.127 17 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -1.174 -2.061 3.504 -7.771 14.672 25.200 -6.857 0.731 2.253 29.849 15.810 30.104 18 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.194 -1.424 3.429 0.540 6.433 38.800 -2.892 -0.223 3.164 9.602 -0.807 39.313 19 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 2.028 -1.855 2.665 9.851 4.804 89.023 -1.399 -1.272 2.750 3.416 -7.004 89.555 20 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.851 1.997 -0.438 29.952 -165.061 -83.716 -0.925 1.444 0.789 84.526 15.338 -170.889 21 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -2.364 -2.375 -1.636 103.314 -139.877 109.214 -1.531 0.929 -1.041 -70.392 -51.992 176.465 22 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 0.148 -1.722 3.157 1.958 4.849 29.948 -4.185 0.081 2.852 9.294 -3.753 30.391 23 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 -0.192 -1.367 3.323 -1.624 11.612 33.113 -3.926 0.087 2.712 19.625 2.744 35.073 24 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 0.685 -1.925 3.538 8.116 9.629 31.734 -4.856 0.155 2.930 16.805 -14.164 34.082 25 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? # _atom_sites.entry_id 2HOL _atom_sites.fract_transf_matrix[1][1] 0.015267 _atom_sites.fract_transf_matrix[1][2] 0.008815 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017629 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009833 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C CA MG N O P S # loop_