data_2JK4 # _entry.id 2JK4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JK4 PDBE EBI-37217 WWPDB D_1290037217 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JK4 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-08-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bayrhuber, M.' 1 'Meins, T.' 2 'Habeck, M.' 3 'Becker, S.' 4 'Giller, K.' 5 'Villinger, S.' 6 'Vonrhein, C.' 7 'Griesinger, C.' 8 'Zweckstetter, M.' 9 'Zeth, K.' 10 # _citation.id primary _citation.title 'Structure of the Human Voltage-Dependent Anion Channel.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 105 _citation.page_first 15370 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18832158 _citation.pdbx_database_id_DOI 10.1073/PNAS.0808115105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bayrhuber, M.' 1 primary 'Meins, T.' 2 primary 'Habeck, M.' 3 primary 'Becker, S.' 4 primary 'Giller, K.' 5 primary 'Villinger, S.' 6 primary 'Vonrhein, C.' 7 primary 'Griesinger, C.' 8 primary 'Zweckstetter, M.' 9 primary 'Zeth, K.' 10 # _cell.entry_id 2JK4 _cell.length_a 77.990 _cell.length_b 77.990 _cell.length_c 167.040 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JK4 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1' _entity.formula_weight 32181.988 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RESIDUES 2-283' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;VOLTAGE-DEPENDENT ANION CHANNEL ISOFORM 1, VDAC-1, HVDAC1, OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN 1, PLASMALEMMAL PORIN, PORIN 31HL, PORIN 31HM, HUMAN VDAC ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNT DNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNF ETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKV NNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQARSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNT DNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNF ETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKV NNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQARSHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 ALA n 1 6 VAL n 1 7 PRO n 1 8 PRO n 1 9 THR n 1 10 TYR n 1 11 ALA n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 LYS n 1 16 SER n 1 17 ALA n 1 18 ARG n 1 19 ASP n 1 20 VAL n 1 21 PHE n 1 22 THR n 1 23 LYS n 1 24 GLY n 1 25 TYR n 1 26 GLY n 1 27 PHE n 1 28 GLY n 1 29 LEU n 1 30 ILE n 1 31 LYS n 1 32 LEU n 1 33 ASP n 1 34 LEU n 1 35 LYS n 1 36 THR n 1 37 LYS n 1 38 SER n 1 39 GLU n 1 40 ASN n 1 41 GLY n 1 42 LEU n 1 43 GLU n 1 44 PHE n 1 45 THR n 1 46 SER n 1 47 SER n 1 48 GLY n 1 49 SER n 1 50 ALA n 1 51 ASN n 1 52 THR n 1 53 GLU n 1 54 THR n 1 55 THR n 1 56 LYS n 1 57 VAL n 1 58 THR n 1 59 GLY n 1 60 SER n 1 61 LEU n 1 62 GLU n 1 63 THR n 1 64 LYS n 1 65 TYR n 1 66 ARG n 1 67 TRP n 1 68 THR n 1 69 GLU n 1 70 TYR n 1 71 GLY n 1 72 LEU n 1 73 THR n 1 74 PHE n 1 75 THR n 1 76 GLU n 1 77 LYS n 1 78 TRP n 1 79 ASN n 1 80 THR n 1 81 ASP n 1 82 ASN n 1 83 THR n 1 84 LEU n 1 85 GLY n 1 86 THR n 1 87 GLU n 1 88 ILE n 1 89 THR n 1 90 VAL n 1 91 GLU n 1 92 ASP n 1 93 GLN n 1 94 LEU n 1 95 ALA n 1 96 ARG n 1 97 GLY n 1 98 LEU n 1 99 LYS n 1 100 LEU n 1 101 THR n 1 102 PHE n 1 103 ASP n 1 104 SER n 1 105 SER n 1 106 PHE n 1 107 SER n 1 108 PRO n 1 109 ASN n 1 110 THR n 1 111 GLY n 1 112 LYS n 1 113 LYS n 1 114 ASN n 1 115 ALA n 1 116 LYS n 1 117 ILE n 1 118 LYS n 1 119 THR n 1 120 GLY n 1 121 TYR n 1 122 LYS n 1 123 ARG n 1 124 GLU n 1 125 HIS n 1 126 ILE n 1 127 ASN n 1 128 LEU n 1 129 GLY n 1 130 CYS n 1 131 ASP n 1 132 MET n 1 133 ASP n 1 134 PHE n 1 135 ASP n 1 136 ILE n 1 137 ALA n 1 138 GLY n 1 139 PRO n 1 140 SER n 1 141 ILE n 1 142 ARG n 1 143 GLY n 1 144 ALA n 1 145 LEU n 1 146 VAL n 1 147 LEU n 1 148 GLY n 1 149 TYR n 1 150 GLU n 1 151 GLY n 1 152 TRP n 1 153 LEU n 1 154 ALA n 1 155 GLY n 1 156 TYR n 1 157 GLN n 1 158 MET n 1 159 ASN n 1 160 PHE n 1 161 GLU n 1 162 THR n 1 163 ALA n 1 164 LYS n 1 165 SER n 1 166 ARG n 1 167 VAL n 1 168 THR n 1 169 GLN n 1 170 SER n 1 171 ASN n 1 172 PHE n 1 173 ALA n 1 174 VAL n 1 175 GLY n 1 176 TYR n 1 177 LYS n 1 178 THR n 1 179 ASP n 1 180 GLU n 1 181 PHE n 1 182 GLN n 1 183 LEU n 1 184 HIS n 1 185 THR n 1 186 ASN n 1 187 VAL n 1 188 ASN n 1 189 ASP n 1 190 GLY n 1 191 THR n 1 192 GLU n 1 193 PHE n 1 194 GLY n 1 195 GLY n 1 196 SER n 1 197 ILE n 1 198 TYR n 1 199 GLN n 1 200 LYS n 1 201 VAL n 1 202 ASN n 1 203 LYS n 1 204 LYS n 1 205 LEU n 1 206 GLU n 1 207 THR n 1 208 ALA n 1 209 VAL n 1 210 ASN n 1 211 LEU n 1 212 ALA n 1 213 TRP n 1 214 THR n 1 215 ALA n 1 216 GLY n 1 217 ASN n 1 218 SER n 1 219 ASN n 1 220 THR n 1 221 ARG n 1 222 PHE n 1 223 GLY n 1 224 ILE n 1 225 ALA n 1 226 ALA n 1 227 LYS n 1 228 TYR n 1 229 GLN n 1 230 ILE n 1 231 ASP n 1 232 PRO n 1 233 ASP n 1 234 ALA n 1 235 CYS n 1 236 PHE n 1 237 SER n 1 238 ALA n 1 239 LYS n 1 240 VAL n 1 241 ASN n 1 242 ASN n 1 243 SER n 1 244 SER n 1 245 LEU n 1 246 ILE n 1 247 GLY n 1 248 LEU n 1 249 GLY n 1 250 TYR n 1 251 THR n 1 252 GLN n 1 253 THR n 1 254 LEU n 1 255 LYS n 1 256 PRO n 1 257 GLY n 1 258 ILE n 1 259 LYS n 1 260 LEU n 1 261 THR n 1 262 LEU n 1 263 SER n 1 264 ALA n 1 265 LEU n 1 266 LEU n 1 267 ASP n 1 268 GLY n 1 269 LYS n 1 270 ASN n 1 271 VAL n 1 272 ASN n 1 273 ALA n 1 274 GLY n 1 275 GLY n 1 276 HIS n 1 277 LYS n 1 278 LEU n 1 279 GLY n 1 280 LEU n 1 281 GLY n 1 282 LEU n 1 283 GLU n 1 284 PHE n 1 285 GLN n 1 286 ALA n 1 287 ARG n 1 288 SER n 1 289 HIS n 1 290 HIS n 1 291 HIS n 1 292 HIS n 1 293 HIS n 1 294 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2JK4 1 ? ? 2JK4 ? 2 UNP VDAC1_HUMAN 1 ? ? P21796 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2JK4 A 1 ? 4 ? 2JK4 1 ? 4 ? 1 4 2 2 2JK4 A 5 ? 286 ? P21796 2 ? 283 ? 5 286 3 1 2JK4 A 287 ? 294 ? 2JK4 287 ? 294 ? 287 294 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JK4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.5 _exptl_crystal.density_percent_sol 73 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.1 M HEPES SODIUM PH 7.5, 30% V/V POLYETHYLENE GLYCOL 400' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2006-02-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95370 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.95370 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JK4 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 43.00 _reflns.d_resolution_high 4.10 _reflns.number_obs 4887 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.40 _reflns.B_iso_Wilson_estimate 175.334 _reflns.pdbx_redundancy 16.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 4.10 _reflns_shell.d_res_low 4.30 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs 0.54 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.50 _reflns_shell.pdbx_redundancy 8.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JK4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4840 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 4.10 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.3314 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.3250 _refine.ls_R_factor_R_free 0.3873 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 477 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 179.12 _refine.aniso_B[1][1] -8.60559481 _refine.aniso_B[2][2] -8.60559481 _refine.aniso_B[3][3] 17.21118962 _refine.aniso_B[1][2] 0.00000000 _refine.aniso_B[1][3] 0.00000000 _refine.aniso_B[2][3] 0.00000000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2207 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2207 _refine_hist.d_res_high 4.10 _refine_hist.d_res_low 25.00 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.d_res_high 4.10 _refine_ls_shell.d_res_low 4.35 _refine_ls_shell.number_reflns_R_work 608 _refine_ls_shell.R_factor_R_work 0.2223 _refine_ls_shell.percent_reflns_obs 97.98 _refine_ls_shell.R_factor_R_free 0.2320 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 11.76 _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.number_reflns_all 689 _refine_ls_shell.R_factor_all 0.2235 # _struct.entry_id 2JK4 _struct.title 'Structure of the human voltage-dependent anion channel' _struct.pdbx_descriptor 'VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JK4 _struct_keywords.pdbx_keywords TRANSPORT _struct_keywords.text ;VDAC, PORIN, MEMBRANE, APOPTOSIS, TRANSPORT, MITOCHONDRION OUTER MEMBRANE, MITOCHONDRIAL OUTER MEMBRANE, MEMBRANE PROTEIN, HOST-VIRUS INTERACTION, ION TRANSPORT, TRANSMEMBRANE, PHOSPHOPROTEIN, ACETYLATION, MITOCHONDRION, CELL MEMBRANE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 10 ? SER A 16 ? TYR A 10 SER A 16 1 ? 7 HELX_P HELX_P2 2 ALA A 17 ? THR A 22 ? ALA A 17 THR A 22 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 81 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 81 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 82 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 82 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.15 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 20 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel A 12 13 ? anti-parallel A 13 14 ? anti-parallel A 14 15 ? anti-parallel A 15 16 ? anti-parallel A 16 17 ? anti-parallel A 17 18 ? anti-parallel A 18 19 ? anti-parallel A 19 20 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 29 ? THR A 36 ? LEU A 29 THR A 36 A 2 GLU A 43 ? ASN A 51 ? GLU A 43 ASN A 51 A 3 LYS A 56 ? TRP A 67 ? LYS A 56 TRP A 67 A 4 LEU A 72 ? TRP A 78 ? LEU A 72 TRP A 78 A 5 LEU A 84 ? VAL A 90 ? LEU A 84 VAL A 90 A 6 LEU A 98 ? PHE A 106 ? LEU A 98 PHE A 106 A 7 ASN A 114 ? ARG A 123 ? ASN A 114 ARG A 123 A 8 ILE A 126 ? ASP A 135 ? ILE A 126 ASP A 135 A 9 SER A 140 ? TYR A 149 ? SER A 140 TYR A 149 A 10 TRP A 152 ? GLU A 161 ? TRP A 152 GLU A 161 A 11 GLN A 169 ? THR A 178 ? GLN A 169 THR A 178 A 12 PHE A 181 ? ASN A 188 ? PHE A 181 ASN A 188 A 13 GLU A 192 ? GLN A 199 ? GLU A 192 GLN A 199 A 14 LEU A 205 ? ALA A 215 ? LEU A 205 ALA A 215 A 15 ARG A 221 ? TYR A 228 ? ARG A 221 TYR A 228 A 16 ALA A 234 ? ASN A 241 ? ALA A 234 ASN A 241 A 17 LEU A 245 ? LEU A 254 ? LEU A 245 LEU A 254 A 18 ILE A 258 ? LEU A 266 ? ILE A 258 LEU A 266 A 19 HIS A 276 ? GLN A 285 ? HIS A 276 GLN A 285 A 20 LEU A 29 ? THR A 36 ? LEU A 29 THR A 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 30 ? N ILE A 30 O ALA A 50 ? O ALA A 50 A 2 3 N SER A 49 ? N SER A 49 O THR A 58 ? O THR A 58 A 3 4 N SER A 60 ? N SER A 60 O TRP A 78 ? O TRP A 78 A 4 5 N LYS A 77 ? N LYS A 77 O GLY A 85 ? O GLY A 85 A 5 6 N VAL A 90 ? N VAL A 90 O LEU A 100 ? O LEU A 100 A 6 7 N ASP A 103 ? N ASP A 103 O LYS A 116 ? O LYS A 116 A 7 8 N ILE A 117 ? N ILE A 117 O MET A 132 ? O MET A 132 A 8 9 N ASP A 131 ? N ASP A 131 O ARG A 142 ? O ARG A 142 A 9 10 N GLY A 143 ? N GLY A 143 O MET A 158 ? O MET A 158 A 10 11 N GLN A 157 ? N GLN A 157 O ASN A 171 ? O ASN A 171 A 11 12 N PHE A 172 ? N PHE A 172 O VAL A 187 ? O VAL A 187 A 12 13 N ASN A 186 ? N ASN A 186 O GLY A 194 ? O GLY A 194 A 13 14 N GLY A 195 ? N GLY A 195 O LEU A 211 ? O LEU A 211 A 14 15 N ASN A 210 ? N ASN A 210 O GLY A 223 ? O GLY A 223 A 15 16 N ILE A 224 ? N ILE A 224 O VAL A 240 ? O VAL A 240 A 16 17 N LYS A 239 ? N LYS A 239 O GLY A 247 ? O GLY A 247 A 17 18 N LEU A 248 ? N LEU A 248 O ALA A 264 ? O ALA A 264 A 18 19 N LEU A 265 ? N LEU A 265 O LYS A 277 ? O LYS A 277 A 19 20 O LEU A 280 ? O LEU A 280 N LYS A 31 ? N LYS A 31 # _database_PDB_matrix.entry_id 2JK4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JK4 _atom_sites.fract_transf_matrix[1][1] 0.012822 _atom_sites.fract_transf_matrix[1][2] 0.007403 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014806 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005987 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 HIS 125 125 125 HIS HIS A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 MET 132 132 132 MET MET A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 TRP 152 152 152 TRP TRP A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 GLN 157 157 157 GLN GLN A . n A 1 158 MET 158 158 158 MET MET A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 SER 165 165 165 SER SER A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 GLN 169 169 169 GLN GLN A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 TYR 176 176 176 TYR TYR A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 GLN 182 182 182 GLN GLN A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 HIS 184 184 184 HIS HIS A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 VAL 187 187 187 VAL VAL A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ASP 189 189 189 ASP ASP A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 PHE 193 193 193 PHE PHE A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 TYR 198 198 198 TYR TYR A . n A 1 199 GLN 199 199 199 GLN GLN A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 LYS 204 204 204 LYS LYS A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 THR 207 207 207 THR THR A . n A 1 208 ALA 208 208 208 ALA ALA A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 ASN 210 210 210 ASN ASN A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 TRP 213 213 213 TRP TRP A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 SER 218 218 218 SER SER A . n A 1 219 ASN 219 219 219 ASN ASN A . n A 1 220 THR 220 220 220 THR THR A . n A 1 221 ARG 221 221 221 ARG ARG A . n A 1 222 PHE 222 222 222 PHE PHE A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 ILE 224 224 224 ILE ILE A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 TYR 228 228 228 TYR TYR A . n A 1 229 GLN 229 229 229 GLN GLN A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 PRO 232 232 232 PRO PRO A . n A 1 233 ASP 233 233 233 ASP ASP A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 CYS 235 235 235 CYS CYS A . n A 1 236 PHE 236 236 236 PHE PHE A . n A 1 237 SER 237 237 237 SER SER A . n A 1 238 ALA 238 238 238 ALA ALA A . n A 1 239 LYS 239 239 239 LYS LYS A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 ASN 241 241 241 ASN ASN A . n A 1 242 ASN 242 242 242 ASN ASN A . n A 1 243 SER 243 243 243 SER SER A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 GLY 247 247 247 GLY GLY A . n A 1 248 LEU 248 248 248 LEU LEU A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 TYR 250 250 250 TYR TYR A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 GLN 252 252 252 GLN GLN A . n A 1 253 THR 253 253 253 THR THR A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 LYS 255 255 255 LYS LYS A . n A 1 256 PRO 256 256 256 PRO PRO A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 ILE 258 258 258 ILE ILE A . n A 1 259 LYS 259 259 259 LYS LYS A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 THR 261 261 261 THR THR A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 SER 263 263 263 SER SER A . n A 1 264 ALA 264 264 264 ALA ALA A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 ASP 267 267 267 ASP ASP A . n A 1 268 GLY 268 268 268 GLY GLY A . n A 1 269 LYS 269 269 269 LYS LYS A . n A 1 270 ASN 270 270 270 ASN ASN A . n A 1 271 VAL 271 271 271 VAL VAL A . n A 1 272 ASN 272 272 272 ASN ASN A . n A 1 273 ALA 273 273 273 ALA ALA A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 GLY 275 275 275 GLY GLY A . n A 1 276 HIS 276 276 276 HIS HIS A . n A 1 277 LYS 277 277 277 LYS LYS A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 GLY 279 279 279 GLY GLY A . n A 1 280 LEU 280 280 280 LEU LEU A . n A 1 281 GLY 281 281 281 GLY GLY A . n A 1 282 LEU 282 282 282 LEU LEU A . n A 1 283 GLU 283 283 283 GLU GLU A . n A 1 284 PHE 284 284 284 PHE PHE A . n A 1 285 GLN 285 285 285 GLN GLN A . n A 1 286 ALA 286 286 286 ALA ALA A . n A 1 287 ARG 287 287 287 ARG ARG A . n A 1 288 SER 288 288 288 SER SER A . n A 1 289 HIS 289 289 ? ? ? A . n A 1 290 HIS 290 290 ? ? ? A . n A 1 291 HIS 291 291 ? ? ? A . n A 1 292 HIS 292 292 ? ? ? A . n A 1 293 HIS 293 293 ? ? ? A . n A 1 294 HIS 294 294 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-14 2 'Structure model' 1 1 2011-05-07 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER-TNT refinement . ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHELXD phasing 'SOLOMON SHARP' ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C A LYS 255 ? ? CD A PRO 256 ? ? 1.12 2 1 O A LYS 255 ? ? CD A PRO 256 ? ? 1.50 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A VAL 6 ? ? N A PRO 7 ? ? CD A PRO 7 ? ? 88.46 128.40 -39.94 2.10 Y 2 1 C A SER 107 ? ? N A PRO 108 ? ? CD A PRO 108 ? ? 115.30 128.40 -13.10 2.10 Y 3 1 C A LYS 255 ? ? N A PRO 256 ? ? CA A PRO 256 ? ? 138.91 119.30 19.61 1.50 Y 4 1 C A LYS 255 ? ? N A PRO 256 ? ? CD A PRO 256 ? ? 46.60 128.40 -81.80 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 2 ? ? 178.86 -100.95 2 1 SER A 4 ? ? -141.57 -144.36 3 1 ALA A 5 ? ? -158.33 30.94 4 1 VAL A 6 ? ? -115.55 -92.09 5 1 PRO A 7 ? ? 47.98 121.69 6 1 PRO A 8 ? ? -72.53 -135.20 7 1 TYR A 10 ? ? -69.49 10.55 8 1 ALA A 11 ? ? -39.25 -115.62 9 1 ASP A 12 ? ? -46.56 -19.24 10 1 LYS A 23 ? ? -61.94 61.66 11 1 LEU A 29 ? ? -177.29 143.02 12 1 THR A 36 ? ? -128.24 -164.24 13 1 LYS A 37 ? ? 173.31 163.47 14 1 THR A 45 ? ? -160.88 104.29 15 1 GLU A 53 ? ? 57.05 -81.99 16 1 LYS A 56 ? ? 175.84 131.09 17 1 THR A 68 ? ? 53.55 146.41 18 1 LEU A 72 ? ? -137.88 -155.52 19 1 THR A 73 ? ? -161.85 119.45 20 1 TRP A 78 ? ? -67.07 -153.07 21 1 ASN A 79 ? ? -174.06 -178.25 22 1 ASP A 81 ? ? 165.24 -77.63 23 1 ASN A 82 ? ? 172.11 -86.49 24 1 THR A 83 ? ? 162.30 168.05 25 1 GLN A 93 ? ? 177.09 174.80 26 1 ARG A 96 ? ? 41.17 -82.33 27 1 PRO A 108 ? ? -48.31 -96.78 28 1 THR A 110 ? ? 45.50 19.06 29 1 ALA A 115 ? ? -92.45 -155.10 30 1 LYS A 116 ? ? 172.46 164.52 31 1 ARG A 123 ? ? -171.64 -154.73 32 1 GLU A 124 ? ? -43.89 -108.50 33 1 ILE A 126 ? ? 173.17 169.53 34 1 ASN A 127 ? ? 172.14 119.88 35 1 ALA A 137 ? ? 60.09 -87.59 36 1 ALA A 144 ? ? -173.02 126.39 37 1 LEU A 145 ? ? -113.81 63.27 38 1 TYR A 149 ? ? -176.10 147.84 39 1 GLU A 150 ? ? -50.38 94.46 40 1 THR A 162 ? ? 58.26 148.10 41 1 THR A 168 ? ? -121.81 -82.70 42 1 ASP A 179 ? ? -43.02 87.12 43 1 VAL A 187 ? ? -118.71 76.39 44 1 THR A 191 ? ? 78.54 78.14 45 1 LEU A 211 ? ? 172.68 143.15 46 1 ALA A 215 ? ? -47.28 166.93 47 1 ASN A 217 ? ? 159.94 -0.56 48 1 SER A 218 ? ? -41.92 160.37 49 1 ASN A 219 ? ? -64.61 -128.69 50 1 ALA A 226 ? ? -177.22 142.35 51 1 GLN A 229 ? ? -62.36 74.69 52 1 ASP A 233 ? ? -61.95 69.75 53 1 ALA A 234 ? ? -177.02 103.91 54 1 PHE A 236 ? ? -124.33 -151.69 55 1 LYS A 239 ? ? -58.87 67.71 56 1 SER A 244 ? ? 166.14 17.26 57 1 LYS A 255 ? ? 45.83 174.29 58 1 PRO A 256 ? ? 41.39 -106.05 59 1 ASP A 267 ? ? -107.09 49.68 60 1 LYS A 269 ? ? -155.13 48.08 61 1 GLN A 285 ? ? -111.26 -166.16 62 1 ALA A 286 ? ? -168.99 -169.37 63 1 ARG A 287 ? ? -132.03 -74.86 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id SER _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 288 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id SER _pdbx_unobs_or_zero_occ_atoms.label_seq_id 288 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 289 ? A HIS 289 2 1 Y 1 A HIS 290 ? A HIS 290 3 1 Y 1 A HIS 291 ? A HIS 291 4 1 Y 1 A HIS 292 ? A HIS 292 5 1 Y 1 A HIS 293 ? A HIS 293 6 1 Y 1 A HIS 294 ? A HIS 294 #