data_2JWQ # _entry.id 2JWQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JWQ pdb_00002jwq 10.2210/pdb2jwq/pdb RCSB RCSB100386 ? ? WWPDB D_1000100386 ? ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JWQ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-10-23 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hounsou, C.' 1 'Guittat, L.' 2 'Monchaud, D.' 3 'Jourdan, M.' 4 'Saettel, N.' 5 'Mergny, J.L.' 6 'Teulade-Fichou, M.' 7 # _citation.id primary _citation.title 'G-Quadruplex Recognition by Quinacridines: a SAR, NMR, and Biological Study' _citation.journal_abbrev ChemMedChem _citation.journal_volume 2 _citation.page_first 655 _citation.page_last 666 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country DE _citation.journal_id_ISSN 1860-7179 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17385760 _citation.pdbx_database_id_DOI 10.1002/cmdc.200600286 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hounsou, C.' 1 ? primary 'Guittat, L.' 2 ? primary 'Monchaud, D.' 3 ? primary 'Jourdan, M.' 4 ? primary 'Saettel, N.' 5 ? primary 'Mergny, J.L.' 6 ? primary 'Teulade-Fichou, M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3') ; 2168.445 4 ? ? ? ? 2 non-polymer syn "N,N'-(dibenzo[b,j][1,7]phenanthroline-2,10-diyldimethanediyl)dipropan-1-amine" 422.565 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DA)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TTAGGGT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DT n # _struct_ref.id 1 _struct_ref.db_code 2JWQ _struct_ref.db_name PDB _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession 2JWQ _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code TTAGGGT _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2JWQ A 1 ? 7 ? 2JWQ 1 ? 7 ? 1 7 2 1 2JWQ B 1 ? 7 ? 2JWQ 8 ? 14 ? 8 14 3 1 2JWQ C 1 ? 7 ? 2JWQ 15 ? 21 ? 15 21 4 1 2JWQ D 1 ? 7 ? 2JWQ 22 ? 28 ? 22 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MM0 non-polymer . "N,N'-(dibenzo[b,j][1,7]phenanthroline-2,10-diyldimethanediyl)dipropan-1-amine" ? 'C28 H30 N4' 422.565 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D DQF-COSY' 1 3 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength '0.1 M KCl and 0.01 M K2HPO4' _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 318 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1,3 mM G-quadruplex, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model UNITYPLUS _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian UnityPlus' # _pdbx_nmr_refine.entry_id 2JWQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 4 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JWQ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JWQ _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_software.authors 'Accelrys Software Inc.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name Discover _pdbx_nmr_software.version 2004.1 _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JWQ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JWQ _struct.title 'G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2JWQ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'G-quadruplex, quinacridine, telomerase inhibitors, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 O4 ? ? ? 1_555 C DT 1 N3 ? ? A DT 1 C DT 15 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog2 hydrog ? ? A DT 1 N3 ? ? ? 1_555 D DT 1 O4 ? ? A DT 1 D DT 22 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog3 hydrog ? ? A DT 2 O4 ? ? ? 1_555 C DA 3 N6 ? ? A DT 2 C DA 17 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog4 hydrog ? ? A DA 3 N6 ? ? ? 1_555 C DA 3 N1 ? ? A DA 3 C DA 17 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog5 hydrog ? ? A DA 3 N1 ? ? ? 1_555 D DA 3 N6 ? ? A DA 3 D DA 24 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog6 hydrog ? ? A DG 4 N7 ? ? ? 1_555 C DG 4 N2 ? ? A DG 4 C DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 O6 ? ? ? 1_555 C DG 4 N1 ? ? A DG 4 C DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DG 4 O6 ? ? A DG 4 D DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 D DG 4 N7 ? ? A DG 4 D DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 N7 ? ? ? 1_555 C DG 5 N2 ? ? A DG 5 C DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 C DG 5 N1 ? ? A DG 5 C DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 D DG 5 O6 ? ? A DG 5 D DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 D DG 5 N7 ? ? A DG 5 D DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 6 N7 ? ? ? 1_555 C DG 6 N2 ? ? A DG 6 C DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 C DG 6 N1 ? ? A DG 6 C DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 D DG 6 O6 ? ? A DG 6 D DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 D DG 6 N7 ? ? A DG 6 D DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DT 7 N3 ? ? ? 1_555 D DT 7 O4 ? ? A DT 7 D DT 28 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog19 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DT 1 O4 ? ? B DT 8 C DT 15 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog20 hydrog ? ? B DT 1 O4 ? ? ? 1_555 D DT 1 N3 ? ? B DT 8 D DT 22 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog21 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DA 3 N6 ? ? B DA 10 C DA 17 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog22 hydrog ? ? B DA 3 N6 ? ? ? 1_555 D DA 3 N1 ? ? B DA 10 D DA 24 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog23 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DG 4 O6 ? ? B DG 11 C DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DG 4 N7 ? ? B DG 11 C DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B DG 4 N7 ? ? ? 1_555 D DG 4 N2 ? ? B DG 11 D DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 4 O6 ? ? ? 1_555 D DG 4 N1 ? ? B DG 11 D DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DG 5 O6 ? ? B DG 12 C DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DG 5 N7 ? ? B DG 12 C DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DG 5 O6 ? ? ? 1_555 D DG 5 N1 ? ? B DG 12 D DG 26 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog30 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DG 6 O6 ? ? B DG 13 C DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DG 6 N7 ? ? B DG 13 C DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 6 N7 ? ? ? 1_555 D DG 6 N2 ? ? B DG 13 D DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 6 O6 ? ? ? 1_555 D DG 6 N1 ? ? B DG 13 D DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MM0 29 ? 8 'BINDING SITE FOR RESIDUE MM0 B 29' AC2 Software B MM0 30 ? 10 'BINDING SITE FOR RESIDUE MM0 B 30' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DA A 3 ? DA A 3 . ? 1_555 ? 2 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 8 DA B 3 ? DA B 10 . ? 1_555 ? 4 AC1 8 DG B 4 ? DG B 11 . ? 1_555 ? 5 AC1 8 DT D 2 ? DT D 23 . ? 1_555 ? 6 AC1 8 DA D 3 ? DA D 24 . ? 1_555 ? 7 AC1 8 DG D 4 ? DG D 25 . ? 1_555 ? 8 AC1 8 DG D 5 ? DG D 26 . ? 1_555 ? 9 AC2 10 DG A 5 ? DG A 5 . ? 1_555 ? 10 AC2 10 DG A 6 ? DG A 6 . ? 1_555 ? 11 AC2 10 DT A 7 ? DT A 7 . ? 1_555 ? 12 AC2 10 DG B 4 ? DG B 11 . ? 1_555 ? 13 AC2 10 DG B 5 ? DG B 12 . ? 1_555 ? 14 AC2 10 DG B 6 ? DG B 13 . ? 1_555 ? 15 AC2 10 DT B 7 ? DT B 14 . ? 1_555 ? 16 AC2 10 DT C 7 ? DT C 21 . ? 1_555 ? 17 AC2 10 DG D 6 ? DG D 27 . ? 1_555 ? 18 AC2 10 DT D 7 ? DT D 28 . ? 1_555 ? # _atom_sites.entry_id 2JWQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DT 7 7 7 DT T A . n B 1 1 DT 1 8 8 DT T B . n B 1 2 DT 2 9 9 DT T B . n B 1 3 DA 3 10 10 DA A B . n B 1 4 DG 4 11 11 DG G B . n B 1 5 DG 5 12 12 DG G B . n B 1 6 DG 6 13 13 DG G B . n B 1 7 DT 7 14 14 DT T B . n C 1 1 DT 1 15 15 DT T C . n C 1 2 DT 2 16 16 DT T C . n C 1 3 DA 3 17 17 DA A C . n C 1 4 DG 4 18 18 DG G C . n C 1 5 DG 5 19 19 DG G C . n C 1 6 DG 6 20 20 DG G C . n C 1 7 DT 7 21 21 DT T C . n D 1 1 DT 1 22 22 DT T D . n D 1 2 DT 2 23 23 DT T D . n D 1 3 DA 3 24 24 DA A D . n D 1 4 DG 4 25 25 DG G D . n D 1 5 DG 5 26 26 DG G D . n D 1 6 DG 6 27 27 DG G D . n D 1 7 DT 7 28 28 DT T D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MM0 1 29 29 MM0 MM0 B . F 2 MM0 1 30 30 MM0 MM0 B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq.db_align_beg' 5 3 'Structure model' '_struct_ref_seq.db_align_end' 6 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_nmr_exptl_sample.component G-quadruplex _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H73 A DT 1 ? ? O2 C DT 16 ? ? 1.43 2 1 H1 B DG 12 ? ? O6 C DG 19 ? ? 1.60 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 11 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.555 _pdbx_validate_rmsd_bond.bond_target_value 1.512 _pdbx_validate_rmsd_bond.bond_deviation 0.043 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.007 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.40 108.30 2.10 0.30 N 2 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 115.44 108.30 7.14 0.30 N 3 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.20 108.30 2.90 0.30 N 4 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.52 108.30 5.22 0.30 N 5 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 113.42 108.30 5.12 0.30 N 6 1 "C4'" B DG 11 ? ? "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? 97.96 102.20 -4.24 0.70 N 7 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 113.52 108.30 5.22 0.30 N 8 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 113.01 108.30 4.71 0.30 N 9 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 111.19 108.30 2.89 0.30 N 10 1 "O4'" C DG 18 ? ? "C1'" C DG 18 ? ? N9 C DG 18 ? ? 112.72 108.30 4.42 0.30 N 11 1 "O4'" C DG 20 ? ? "C1'" C DG 20 ? ? N9 C DG 20 ? ? 112.29 108.30 3.99 0.30 N 12 1 "O4'" C DT 21 ? ? "C1'" C DT 21 ? ? N1 C DT 21 ? ? 112.42 108.30 4.12 0.30 N 13 1 C6 C DT 21 ? ? C5 C DT 21 ? ? C7 C DT 21 ? ? 119.01 122.90 -3.89 0.60 N 14 1 "O4'" D DA 24 ? ? "C1'" D DA 24 ? ? N9 D DA 24 ? ? 110.71 108.30 2.41 0.30 N 15 1 "O4'" D DG 25 ? ? "C1'" D DG 25 ? ? N9 D DG 25 ? ? 112.66 108.30 4.36 0.30 N 16 1 "O4'" D DG 27 ? ? "C1'" D DG 27 ? ? N9 D DG 27 ? ? 111.62 108.30 3.32 0.30 N 17 1 "O4'" D DT 28 ? ? "C1'" D DT 28 ? ? N1 D DT 28 ? ? 112.19 108.30 3.89 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 6 ? ? 0.055 'SIDE CHAIN' 2 1 DT A 7 ? ? 0.078 'SIDE CHAIN' 3 1 DG C 18 ? ? 0.092 'SIDE CHAIN' 4 1 DG C 20 ? ? 0.086 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 2JWQ _ndb_struct_conf_na.feature 'quadruple helix' # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name "N,N'-(dibenzo[b,j][1,7]phenanthroline-2,10-diyldimethanediyl)dipropan-1-amine" _pdbx_entity_nonpoly.comp_id MM0 #