data_2JYQ # _entry.id 2JYQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JYQ pdb_00002jyq 10.2210/pdb2jyq/pdb RCSB RCSB100457 ? ? WWPDB D_1000100457 ? ? # _pdbx_database_related.db_id 6503 _pdbx_database_related.db_name BMRB _pdbx_database_related.details '1H, 13C, and 15N complete chemical shift assignments for the apo v-Src SH2 domain' _pdbx_database_related.content_type unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JYQ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-12-17 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Taylor, J.D.' 1 'Ababou, A.' 2 'Williams, M.A.' 3 'Ladbury, J.E.' 4 # _citation.id primary _citation.title 'Structure, dynamics, and binding thermodynamics of the v-Src SH2 domain: Implications for drug design' _citation.journal_abbrev Proteins _citation.journal_volume 73 _citation.page_first 929 _citation.page_last 940 _citation.year 2008 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18536014 _citation.pdbx_database_id_DOI 10.1002/prot.22119 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Taylor, J.D.' 1 ? primary 'Ababou, A.' 2 ? primary 'Fawaz, R.R.' 3 ? primary 'Hobbs, C.J.' 4 ? primary 'Williams, M.A.' 5 ? primary 'Ladbury, J.E.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Tyrosine-protein kinase transforming protein Src' _entity.formula_weight 12186.738 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.7.10.2 _entity.pdbx_mutation ? _entity.pdbx_fragment 'SH2 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'p60-Src, v-Src, pp60v-src' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSL QQLVAYYSKHADGLCHRLTNVCPTSK ; _entity_poly.pdbx_seq_one_letter_code_can ;QAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSL QQLVAYYSKHADGLCHRLTNVCPTSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ALA n 1 3 GLU n 1 4 GLU n 1 5 TRP n 1 6 TYR n 1 7 PHE n 1 8 GLY n 1 9 LYS n 1 10 ILE n 1 11 THR n 1 12 ARG n 1 13 ARG n 1 14 GLU n 1 15 SER n 1 16 GLU n 1 17 ARG n 1 18 LEU n 1 19 LEU n 1 20 LEU n 1 21 ASN n 1 22 PRO n 1 23 GLU n 1 24 ASN n 1 25 PRO n 1 26 ARG n 1 27 GLY n 1 28 THR n 1 29 PHE n 1 30 LEU n 1 31 VAL n 1 32 ARG n 1 33 GLU n 1 34 SER n 1 35 GLU n 1 36 THR n 1 37 THR n 1 38 LYS n 1 39 GLY n 1 40 ALA n 1 41 TYR n 1 42 CYS n 1 43 LEU n 1 44 SER n 1 45 VAL n 1 46 SER n 1 47 ASP n 1 48 PHE n 1 49 ASP n 1 50 ASN n 1 51 ALA n 1 52 LYS n 1 53 GLY n 1 54 LEU n 1 55 ASN n 1 56 VAL n 1 57 LYS n 1 58 HIS n 1 59 TYR n 1 60 LYS n 1 61 ILE n 1 62 ARG n 1 63 LYS n 1 64 LEU n 1 65 ASP n 1 66 SER n 1 67 GLY n 1 68 GLY n 1 69 PHE n 1 70 TYR n 1 71 ILE n 1 72 THR n 1 73 SER n 1 74 ARG n 1 75 THR n 1 76 GLN n 1 77 PHE n 1 78 SER n 1 79 SER n 1 80 LEU n 1 81 GLN n 1 82 GLN n 1 83 LEU n 1 84 VAL n 1 85 ALA n 1 86 TYR n 1 87 TYR n 1 88 SER n 1 89 LYS n 1 90 HIS n 1 91 ALA n 1 92 ASP n 1 93 GLY n 1 94 LEU n 1 95 CYS n 1 96 HIS n 1 97 ARG n 1 98 LEU n 1 99 THR n 1 100 ASN n 1 101 VAL n 1 102 CYS n 1 103 PRO n 1 104 THR n 1 105 SER n 1 106 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene V-SRC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Schmidt-Ruppin E' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rous sarcoma virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11886 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pET3a _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SRC_RSVSE _struct_ref.pdbx_db_accession P63185 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSL QQLVAYYSKHADGLCHRLTNVCPTSK ; _struct_ref.pdbx_align_begin 144 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JYQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 106 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P63185 _struct_ref_seq.db_align_beg 144 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 249 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 106 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D C(CO)NH' 1 5 1 '3D HNCO' 1 6 1 '3D HNCA' 1 7 1 '3D HNCACB' 1 8 2 '3D HNHA' 1 9 2 '3D HNHB' 1 10 1 '3D HCCH-TOCSY' 1 11 2 '3D 1H-15N NOESY' 1 12 2 '3D 1H-15N NOESY' 1 13 2 '3D 1H-15N TOCSY' 1 14 1 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.5mM [U-100% 13C; U-100% 15N] v-Src SH2 polypeptide, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.5mM [U-100% 15N] v-Src SH2 polypeptide, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Varian UNITYPLUS 1 'Varian UnityPlus' 600 Varian UNITYPLUS 2 'Varian UnityPlus' 800 Varian INOVA 3 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2JYQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Final structures refined in shell of water' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2JYQ _pdbx_nmr_details.text 'The structure was determined using a combination of NOE and H bonding data' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'back calculated data agree with experimental NOESY spectrum' _pdbx_nmr_ensemble.conformers_calculated_total_number 120 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JYQ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.3 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JYQ _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax' processing NMRPipe ? 1 Kraulis 'chemical shift assignment' ANSIG ? 2 Kraulis 'peak picking' ANSIG ? 3 ;Linge, O'Donoghue, Nilges ; 'automated noesy assignment' ARIA 2.2 4 'Brunger, Adams, Clore, Gros, Nilges, Read' 'structure solution' CNS 1.2 5 'Brunger, Adams, Clore, Gros, Nilges, Read' refinement CNS 1.2 6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JYQ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JYQ _struct.title 'NMR structure of the apo v-Src SH2 domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JYQ _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;PROTEIN, SRC, SH2, src homology 2, ATP-binding, Kinase, Lipoprotein, Myristate, Nucleotide-binding, Oncogene, Phosphoprotein, SH2 domain, SH3 domain, Transferase, Tyrosine-protein kinase ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 11 ? LEU A 20 ? THR A 11 LEU A 20 1 ? 10 HELX_P HELX_P2 2 SER A 79 ? SER A 88 ? SER A 79 SER A 88 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 6 ? GLY A 8 ? TYR A 6 GLY A 8 A 2 THR A 28 ? GLU A 33 ? THR A 28 GLU A 33 A 3 TYR A 41 ? ASP A 49 ? TYR A 41 ASP A 49 A 4 GLY A 53 ? LYS A 63 ? GLY A 53 LYS A 63 A 5 PHE A 69 ? TYR A 70 ? PHE A 69 TYR A 70 B 1 TYR A 6 ? GLY A 8 ? TYR A 6 GLY A 8 B 2 THR A 28 ? GLU A 33 ? THR A 28 GLU A 33 B 3 ASN A 100 ? VAL A 101 ? ASN A 100 VAL A 101 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 8 ? N GLY A 8 O GLU A 33 ? O GLU A 33 A 2 3 N THR A 28 ? N THR A 28 O SER A 46 ? O SER A 46 A 3 4 N VAL A 45 ? N VAL A 45 O LYS A 57 ? O LYS A 57 A 4 5 N ARG A 62 ? N ARG A 62 O TYR A 70 ? O TYR A 70 B 1 2 N GLY A 8 ? N GLY A 8 O GLU A 33 ? O GLU A 33 B 2 3 N PHE A 29 ? N PHE A 29 O ASN A 100 ? O ASN A 100 # _atom_sites.entry_id 2JYQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 TRP 5 5 5 TRP TRP A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 CYS 102 102 102 CYS CYS A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 LYS 106 106 106 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.006 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0.001 _pdbx_nmr_ensemble_rms.entry_id 2JYQ _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'v-Src SH2 polypeptide' 0.5 mM '[U-100% 13C; U-100% 15N]' 1 'v-Src SH2 polypeptide' 0.5 mM '[U-100% 15N]' 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2JYQ _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 82 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 2929 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 47 ? ? HZ1 A LYS 57 ? ? 1.57 2 4 O A PRO 103 ? ? HG1 A THR 104 ? ? 1.55 3 4 H1 A GLN 1 ? ? OE1 A GLU 3 ? ? 1.60 4 12 HH12 A ARG 32 ? ? OE2 A GLU 35 ? ? 1.57 5 16 HD1 A HIS 90 ? ? OD1 A ASP 92 ? ? 1.54 6 19 HA2 A GLY 39 ? ? HD3 A LYS 63 ? ? 1.21 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 4 ? ? 30.42 -84.51 2 1 LEU A 20 ? ? -78.01 38.16 3 1 ALA A 51 ? ? -165.51 -26.29 4 1 SER A 73 ? ? -74.69 42.53 5 1 ARG A 74 ? ? -125.95 -71.90 6 1 ASP A 92 ? ? 67.75 -67.03 7 1 LEU A 98 ? ? -56.83 109.76 8 1 THR A 99 ? ? -98.71 -60.09 9 1 SER A 105 ? ? -140.42 33.09 10 2 ALA A 2 ? ? -177.90 53.39 11 2 ASN A 50 ? ? -81.48 49.83 12 2 ALA A 51 ? ? -171.32 -41.87 13 2 SER A 66 ? ? -142.21 14.43 14 2 ASP A 92 ? ? 62.90 -81.71 15 2 LEU A 98 ? ? -52.25 106.59 16 3 LEU A 20 ? ? -77.52 26.65 17 3 ALA A 51 ? ? -120.21 -51.22 18 3 SER A 73 ? ? -78.91 47.04 19 3 ARG A 74 ? ? -125.44 -62.72 20 3 ASP A 92 ? ? 66.55 -72.15 21 3 ARG A 97 ? ? 66.82 124.82 22 3 THR A 99 ? ? -96.02 -66.02 23 4 ALA A 2 ? ? 176.82 50.88 24 4 PRO A 22 ? ? -69.54 23.66 25 4 PHE A 48 ? ? -101.84 72.82 26 4 ALA A 51 ? ? -162.22 -51.53 27 4 LEU A 64 ? ? -70.10 -91.69 28 4 ASP A 65 ? ? -134.16 -34.37 29 4 SER A 66 ? ? -149.07 -31.13 30 4 ASP A 92 ? ? 70.11 -73.74 31 4 LEU A 98 ? ? -69.04 85.68 32 4 THR A 104 ? ? 57.39 -175.81 33 4 SER A 105 ? ? -154.97 -10.34 34 5 PRO A 22 ? ? -65.67 14.39 35 5 THR A 36 ? ? -103.21 -66.65 36 5 ARG A 74 ? ? -126.34 -78.64 37 5 ASP A 92 ? ? 64.75 -80.00 38 5 LEU A 98 ? ? -60.33 97.58 39 6 PRO A 22 ? ? -69.88 8.48 40 6 ASP A 65 ? ? 63.91 -66.26 41 6 SER A 73 ? ? -76.06 21.52 42 6 ASP A 92 ? ? 62.94 -82.79 43 6 SER A 105 ? ? 63.37 69.41 44 7 GLU A 4 ? ? 28.19 -78.57 45 7 LYS A 9 ? ? -100.14 68.86 46 7 LYS A 38 ? ? -84.84 38.75 47 7 ARG A 74 ? ? -139.82 -71.60 48 7 LYS A 89 ? ? -131.66 -38.32 49 7 ASP A 92 ? ? 62.19 -82.41 50 7 LEU A 98 ? ? -56.37 107.30 51 7 THR A 99 ? ? -96.64 -60.86 52 8 LYS A 9 ? ? -107.87 71.04 53 8 PRO A 22 ? ? -65.02 1.47 54 8 ARG A 26 ? ? -58.88 109.66 55 8 ARG A 74 ? ? -130.40 -54.75 56 8 ASP A 92 ? ? 63.61 -86.21 57 9 GLU A 3 ? ? 70.64 -174.78 58 9 ARG A 74 ? ? -142.47 -28.71 59 9 ASP A 92 ? ? 67.52 -78.22 60 9 THR A 99 ? ? -89.12 -78.20 61 10 LYS A 9 ? ? -95.79 50.52 62 10 ASN A 50 ? ? -89.45 31.72 63 10 ALA A 51 ? ? -137.26 -49.57 64 10 SER A 73 ? ? -78.37 46.79 65 10 ARG A 74 ? ? -131.13 -67.03 66 10 ASP A 92 ? ? 59.89 -87.43 67 11 PRO A 22 ? ? -72.85 30.37 68 11 ALA A 51 ? ? -177.08 -33.73 69 11 LYS A 52 ? ? -108.30 -63.70 70 11 ASP A 92 ? ? 65.41 -72.27 71 12 ALA A 2 ? ? -151.49 65.48 72 12 LYS A 9 ? ? -67.10 98.75 73 12 PRO A 22 ? ? -70.35 44.61 74 12 ALA A 40 ? ? -155.84 88.84 75 12 ASP A 65 ? ? 174.12 -30.29 76 12 SER A 66 ? ? -125.39 -62.33 77 12 ARG A 74 ? ? -138.49 -35.54 78 12 ASP A 92 ? ? 68.23 -70.74 79 12 CYS A 95 ? ? 83.17 -29.65 80 12 LEU A 98 ? ? -66.09 94.87 81 12 THR A 99 ? ? -91.80 -63.81 82 13 LEU A 30 ? ? -171.13 147.59 83 13 LEU A 64 ? ? -81.20 -81.36 84 13 ASP A 65 ? ? -170.13 -64.31 85 13 ARG A 74 ? ? -169.28 -47.64 86 13 ASP A 92 ? ? 53.30 -88.08 87 13 LEU A 98 ? ? -62.18 99.67 88 14 ALA A 2 ? ? 55.89 74.80 89 14 GLU A 3 ? ? -127.89 -143.99 90 14 GLU A 4 ? ? 74.14 -47.94 91 14 PRO A 22 ? ? -70.46 46.68 92 14 SER A 66 ? ? 81.82 26.93 93 14 ASP A 92 ? ? 65.36 -75.52 94 14 THR A 99 ? ? -94.92 -63.25 95 14 SER A 105 ? ? 60.98 98.41 96 15 ALA A 2 ? ? -156.34 62.73 97 15 LEU A 20 ? ? -85.22 42.53 98 15 SER A 66 ? ? -153.28 58.71 99 15 ARG A 74 ? ? -132.04 -78.98 100 15 ASP A 92 ? ? 62.63 -81.80 101 15 LEU A 98 ? ? -66.49 88.97 102 16 PRO A 22 ? ? -72.63 49.17 103 16 ALA A 51 ? ? -177.82 -36.29 104 16 ARG A 74 ? ? -130.74 -64.45 105 16 LYS A 89 ? ? -120.58 -51.42 106 16 ASP A 92 ? ? 66.92 -65.48 107 16 LEU A 98 ? ? -64.79 95.79 108 16 THR A 99 ? ? -90.34 -60.50 109 17 GLU A 3 ? ? 58.75 -170.00 110 17 LEU A 20 ? ? -79.17 49.43 111 17 PRO A 22 ? ? -71.82 41.76 112 17 ASP A 92 ? ? 65.42 -76.32 113 18 ALA A 51 ? ? -129.02 -54.32 114 18 SER A 73 ? ? -81.74 47.91 115 18 ARG A 74 ? ? -135.37 -57.73 116 18 ASP A 92 ? ? 59.86 -83.99 117 18 LEU A 98 ? ? -68.62 87.17 118 18 SER A 105 ? ? 62.14 83.84 119 19 LYS A 9 ? ? -111.17 51.60 120 19 PRO A 22 ? ? -69.41 7.67 121 19 ASP A 65 ? ? 73.93 -55.57 122 19 ARG A 74 ? ? -135.96 -77.53 123 19 ASP A 92 ? ? 68.39 -71.63 124 19 THR A 99 ? ? -91.58 -62.84 125 19 SER A 105 ? ? 64.18 61.07 126 20 ALA A 2 ? ? -177.02 144.92 127 20 ARG A 26 ? ? -63.13 99.76 128 20 ASP A 47 ? ? -107.26 76.06 129 20 LEU A 64 ? ? -78.80 -74.22 130 20 ASP A 65 ? ? 173.20 -44.70 131 20 ASP A 92 ? ? 61.02 -78.98 132 20 LEU A 98 ? ? -67.79 84.62 #