data_2KDA # _entry.id 2KDA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KDA pdb_00002kda 10.2210/pdb2kda/pdb RCSB RCSB100977 ? ? WWPDB D_1000100977 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2KD9 _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KDA _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-05 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'de los Santos, C.' 1 'Zaliznyak, T.' 2 'Johnson, F.' 3 'Bonala, R.' 4 'Attaluri, S.' 5 # _citation.id primary _citation.title 'Solution structure of DNA containing alpha-OH-PdG: the mutagenic adduct produced by acrolein.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 37 _citation.page_first 2153 _citation.page_last 2163 _citation.year 2009 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19223332 _citation.pdbx_database_id_DOI 10.1093/nar/gkp076 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zaliznyak, T.' 1 ? primary 'Bonala, R.' 2 ? primary 'Attaluri, S.' 3 ? primary 'Johnson, F.' 4 ? primary 'de los Santos, C.' 5 ? # _cell.entry_id 2KDA _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KDA _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*(63H)P*CP*AP*TP*GP*C)-3'" 3390.249 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3'" 3374.210 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DT)(DA)(DC)(63H)(DC)(DA)(DT)(DG)(DC)' CGTACXCATGC A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DG)(DC)(DG)(DT)(DA)(DC)(DG)' GCATGCGTACG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 63H n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DT n 2 9 DA n 2 10 DC n 2 11 DG n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2KDA 2KDA 1 1 CGTACXCATGC ? 2 PDB 2KDA 2KDA 2 1 GCATGCGTACG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KDA A 1 ? 11 ? 2KDA 1 ? 11 ? 1 11 2 2 2KDA B 1 ? 11 ? 2KDA 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 63H 'DNA linking' n '(6R)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-hydroxy-5,6,7,8-tetrahydropyrimido[1,2-a]purin-10(3H)-one' ? 'C13 H18 N5 O8 P' 403.284 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-1H COSY' 1 4 1 '2D DQF-COSY' 2 5 2 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 '50mM NaCl' 5.9 ambient ? 298 K 2 '50mM NaCl' 5.9 ambient ? 278 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '2.5 mM DNA duplex, alpha-OH-PdG-1, 100% D2O' 1 '100% D2O' '2.5 mM DNA duplex, alpha-OH-PdG-2, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KDA _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2KDA _pdbx_nmr_details.text 'AUTHOR STATES THAT 25 MODELS WERE CALCULATED BY RESTRAINED MD. MODEL 1 IS AN AVERAGED MINIMIZED STRUCTURE OF THESE 25 MODELS.' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 25 _pdbx_nmr_ensemble.conformers_submitted_total_number 26 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KDA _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 0.6 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.6 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KDA _pdbx_nmr_representative.selection_criteria 'minimized average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Accelrys Software Inc.' processing Felix ? 1 'Accelrys Software Inc.' 'data analysis' Felix ? 2 'Accelrys Software Inc.' 'chemical shift assignment' Felix ? 3 'Accelrys Software Inc.' 'peak picking' Felix ? 4 Varian collection VNMR ? 5 'Accelrys Software Inc.' 'geometry optimization' 'Insight II' ? 6 'UCSF Chimera' 'geometry optimization' Chimera ? 7 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 8 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KDA _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KDA _struct.title 'Solution Structure of DNA Containing Alpha-OH-PdG: the Mutagenic Adduct Produced by Acrolein' _struct.pdbx_model_details 'minimized average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KDA _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Acrolein lesions, DNA damaged, DNA structure, exocyclic, Propano-dG lesions, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 5 "O3'" ? ? ? 1_555 A 63H 6 P ? ? A DC 5 A 63H 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale one ? A 63H 6 "O3'" ? ? ? 1_555 A DC 7 P ? ? A 63H 6 A DC 7 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 3 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 3 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 63H 6 O6 ? ? ? 1_555 B DC 6 N4 ? ? A 63H 6 B DC 6 1_555 ? ? ? ? ? ? '63H-DC PAIR' ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 7 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 7 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 7 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 8 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 8 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 10 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 10 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 10 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2KDA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 63H 6 6 6 63H 63H A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DC 10 10 10 DC DC B . n B 2 11 DG 11 11 11 DG DG B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 63H _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 63H _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.3 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2KDA _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'DNA duplex, alpha-OH-PdG-1' 2.5 ? mM ? 1 'DNA duplex, alpha-OH-PdG-2' 2.5 ? mM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KDA _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 26 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 485 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 2 1 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.532 1.496 0.036 0.006 N 3 3 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.532 1.496 0.036 0.006 N 4 3 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.532 1.496 0.036 0.006 N 5 4 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 6 4 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.534 1.496 0.038 0.006 N 7 5 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.537 1.496 0.041 0.006 N 8 5 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039 0.006 N 9 6 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 10 7 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.533 1.496 0.037 0.006 N 11 7 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039 0.006 N 12 8 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.536 1.496 0.040 0.006 N 13 8 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039 0.006 N 14 9 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.538 1.496 0.042 0.006 N 15 9 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039 0.006 N 16 10 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.535 1.496 0.039 0.006 N 17 10 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.533 1.496 0.037 0.006 N 18 11 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 19 11 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039 0.006 N 20 12 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.569 1.512 0.057 0.007 N 21 12 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.538 1.496 0.042 0.006 N 22 12 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.533 1.496 0.037 0.006 N 23 12 C5 B DT 4 ? ? C7 B DT 4 ? ? 1.535 1.496 0.039 0.006 N 24 12 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039 0.006 N 25 13 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.535 1.496 0.039 0.006 N 26 13 C5 B DT 4 ? ? C7 B DT 4 ? ? 1.534 1.496 0.038 0.006 N 27 13 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.534 1.496 0.038 0.006 N 28 14 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.533 1.496 0.037 0.006 N 29 15 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.533 1.496 0.037 0.006 N 30 16 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 31 16 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.533 1.496 0.037 0.006 N 32 17 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 33 17 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.534 1.496 0.038 0.006 N 34 18 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 35 18 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.533 1.496 0.037 0.006 N 36 19 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.533 1.496 0.037 0.006 N 37 20 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.535 1.496 0.039 0.006 N 38 20 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.533 1.496 0.037 0.006 N 39 21 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.533 1.496 0.037 0.006 N 40 21 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.534 1.496 0.038 0.006 N 41 22 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.537 1.496 0.041 0.006 N 42 22 C5 B DT 4 ? ? C7 B DT 4 ? ? 1.533 1.496 0.037 0.006 N 43 22 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.533 1.496 0.037 0.006 N 44 23 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.533 1.496 0.037 0.006 N 45 23 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.533 1.496 0.037 0.006 N 46 24 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.532 1.496 0.036 0.006 N 47 25 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 48 25 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039 0.006 N 49 26 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.537 1.496 0.041 0.006 N 50 26 C5 B DT 4 ? ? C7 B DT 4 ? ? 1.532 1.496 0.036 0.006 N 51 26 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.534 1.496 0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.21 108.30 1.91 0.30 N 2 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.12 108.30 2.82 0.30 N 3 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.12 108.30 3.82 0.30 N 4 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 110.84 108.30 2.54 0.30 N 5 1 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.37 119.70 7.67 1.20 Y 6 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.08 108.30 3.78 0.30 N 7 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.63 108.30 3.33 0.30 N 8 1 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.78 119.70 8.08 1.20 Y 9 1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.55 108.30 4.25 0.30 N 10 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.80 108.30 3.50 0.30 N 11 2 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DA 8 ? ? 127.20 119.70 7.50 1.20 Y 12 2 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.38 108.30 3.08 0.30 N 13 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.45 108.30 3.15 0.30 N 14 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.93 108.30 2.63 0.30 N 15 2 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 110.90 108.30 2.60 0.30 N 16 2 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 126.91 119.70 7.21 1.20 Y 17 2 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.43 108.30 4.13 0.30 N 18 2 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.31 108.30 2.01 0.30 N 19 2 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.34 108.30 4.04 0.30 N 20 2 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.14 119.70 7.44 1.20 Y 21 2 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.74 108.30 4.44 0.30 N 22 2 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.31 108.30 3.01 0.30 N 23 3 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.63 108.30 2.33 0.30 N 24 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.65 108.30 3.35 0.30 N 25 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.05 108.30 3.75 0.30 N 26 3 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.04 119.70 7.34 1.20 Y 27 3 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.75 108.30 4.45 0.30 N 28 3 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.51 108.30 2.21 0.30 N 29 3 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.37 108.30 4.07 0.30 N 30 3 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.85 119.70 8.15 1.20 Y 31 3 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.91 108.30 4.61 0.30 N 32 3 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.40 108.30 3.10 0.30 N 33 4 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.51 108.30 2.21 0.30 N 34 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.05 108.30 2.75 0.30 N 35 4 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.87 108.30 2.57 0.30 N 36 4 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 110.84 108.30 2.54 0.30 N 37 4 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.95 108.30 3.65 0.30 N 38 4 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.61 108.30 2.31 0.30 N 39 4 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.11 108.30 3.81 0.30 N 40 4 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.16 119.70 7.46 1.20 Y 41 4 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.15 108.30 3.85 0.30 N 42 4 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.16 108.30 2.86 0.30 N 43 5 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.29 122.90 -3.61 0.60 N 44 5 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.36 108.30 2.06 0.30 N 45 5 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.26 108.30 2.96 0.30 N 46 5 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.61 108.30 2.31 0.30 N 47 5 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 126.92 119.70 7.22 1.20 Y 48 5 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.92 108.30 3.62 0.30 N 49 5 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.21 108.30 1.91 0.30 N 50 5 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.81 108.30 3.51 0.30 N 51 5 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.46 119.70 7.76 1.20 Y 52 5 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.71 108.30 4.41 0.30 N 53 5 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.41 108.30 3.11 0.30 N 54 6 "C3'" A 63H 6 ? ? "O3'" A 63H 6 ? ? P A DC 7 ? ? 127.85 119.70 8.15 1.20 Y 55 6 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.30 108.30 2.00 0.30 N 56 6 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.89 108.30 3.59 0.30 N 57 6 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.07 108.30 2.77 0.30 N 58 6 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 110.14 108.30 1.84 0.30 N 59 6 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.39 119.70 7.69 1.20 Y 60 6 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.48 108.30 4.18 0.30 N 61 6 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.15 108.30 1.85 0.30 N 62 6 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.89 108.30 3.59 0.30 N 63 6 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.63 119.70 7.93 1.20 Y 64 6 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.80 108.30 4.50 0.30 N 65 6 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.66 108.30 3.36 0.30 N 66 7 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.80 108.30 2.50 0.30 N 67 7 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.94 108.30 3.64 0.30 N 68 7 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.91 108.30 4.61 0.30 N 69 7 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.76 119.70 8.06 1.20 Y 70 7 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 113.01 108.30 4.71 0.30 N 71 7 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.34 108.30 2.04 0.30 N 72 7 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.26 108.30 2.96 0.30 N 73 7 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.67 119.70 7.97 1.20 Y 74 7 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 113.01 108.30 4.71 0.30 N 75 7 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.32 108.30 3.02 0.30 N 76 8 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.56 108.30 2.26 0.30 N 77 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.29 108.30 2.99 0.30 N 78 8 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.76 108.30 2.46 0.30 N 79 8 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.10 119.70 7.40 1.20 Y 80 8 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.09 108.30 3.79 0.30 N 81 8 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.52 108.30 2.22 0.30 N 82 8 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.68 108.30 2.38 0.30 N 83 8 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 110.90 108.30 2.60 0.30 N 84 8 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.42 119.70 7.72 1.20 Y 85 8 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.80 108.30 4.50 0.30 N 86 8 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.26 108.30 2.96 0.30 N 87 9 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.28 108.30 1.98 0.30 N 88 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.09 108.30 2.79 0.30 N 89 9 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.87 108.30 2.57 0.30 N 90 9 "O4'" B DG 1 ? ? "C4'" B DG 1 ? ? "C3'" B DG 1 ? ? 110.09 106.00 4.09 0.60 N 91 9 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.71 108.30 4.41 0.30 N 92 9 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.29 108.30 1.99 0.30 N 93 9 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.19 108.30 3.89 0.30 N 94 9 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.37 119.70 7.67 1.20 Y 95 9 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 113.19 108.30 4.89 0.30 N 96 9 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.53 108.30 3.23 0.30 N 97 10 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.26 122.90 -3.64 0.60 N 98 10 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.64 108.30 2.34 0.30 N 99 10 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.26 108.30 2.96 0.30 N 100 10 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.99 108.30 2.69 0.30 N 101 10 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.65 119.70 7.95 1.20 Y 102 10 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.94 108.30 3.64 0.30 N 103 10 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.29 108.30 1.99 0.30 N 104 10 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.69 108.30 2.39 0.30 N 105 10 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.44 108.30 3.14 0.30 N 106 10 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.63 119.70 7.93 1.20 Y 107 10 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.95 108.30 4.65 0.30 N 108 10 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.60 108.30 3.30 0.30 N 109 11 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.97 108.30 2.67 0.30 N 110 11 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.53 108.30 2.23 0.30 N 111 11 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.00 108.30 2.70 0.30 N 112 11 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.26 108.30 2.96 0.30 N 113 11 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.38 108.30 4.08 0.30 N 114 11 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.67 119.70 7.97 1.20 Y 115 11 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.31 108.30 4.01 0.30 N 116 11 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.26 108.30 1.96 0.30 N 117 11 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.57 108.30 3.27 0.30 N 118 11 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.64 119.70 7.94 1.20 Y 119 11 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.42 108.30 4.12 0.30 N 120 11 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.37 108.30 3.07 0.30 N 121 12 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.68 118.90 3.78 0.60 N 122 12 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 128.95 119.70 9.25 1.20 Y 123 12 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.82 108.30 2.52 0.30 N 124 12 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.88 122.90 -4.02 0.60 N 125 12 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.13 108.30 1.83 0.30 N 126 12 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.18 119.70 7.48 1.20 Y 127 12 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.14 108.30 2.84 0.30 N 128 12 C6 B DT 4 ? ? C5 B DT 4 ? ? C7 B DT 4 ? ? 119.00 122.90 -3.90 0.60 N 129 12 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 110.94 108.30 2.64 0.30 N 130 12 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.72 108.30 3.42 0.30 N 131 12 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.58 119.70 7.88 1.20 Y 132 12 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.89 108.30 4.59 0.30 N 133 13 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.36 108.30 2.06 0.30 N 134 13 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.72 108.30 3.42 0.30 N 135 13 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.64 108.30 2.34 0.30 N 136 13 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.27 119.70 7.57 1.20 Y 137 13 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.05 108.30 3.75 0.30 N 138 13 "C3'" B DG 5 ? ? "O3'" B DG 5 ? ? P B DC 6 ? ? 127.31 119.70 7.61 1.20 Y 139 13 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.05 108.30 2.75 0.30 N 140 13 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.28 119.70 7.58 1.20 Y 141 13 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.51 108.30 4.21 0.30 N 142 13 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 114.50 108.30 6.20 0.30 N 143 14 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.62 108.30 2.32 0.30 N 144 14 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.64 108.30 3.34 0.30 N 145 14 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.33 108.30 4.03 0.30 N 146 14 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.42 108.30 3.12 0.30 N 147 14 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.97 119.70 8.27 1.20 Y 148 14 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.41 108.30 4.11 0.30 N 149 14 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.35 108.30 2.05 0.30 N 150 14 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.34 108.30 3.04 0.30 N 151 14 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.73 119.70 8.03 1.20 Y 152 14 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.75 108.30 4.45 0.30 N 153 14 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.51 108.30 4.21 0.30 N 154 15 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.81 108.30 2.51 0.30 N 155 15 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.74 108.30 3.44 0.30 N 156 15 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.04 108.30 3.74 0.30 N 157 15 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.25 119.70 7.55 1.20 Y 158 15 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.29 108.30 3.99 0.30 N 159 15 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.38 108.30 2.08 0.30 N 160 15 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.46 108.30 3.16 0.30 N 161 15 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.65 119.70 7.95 1.20 Y 162 15 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.82 108.30 4.52 0.30 N 163 15 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.83 108.30 3.53 0.30 N 164 16 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.38 108.30 2.08 0.30 N 165 16 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.56 108.30 3.26 0.30 N 166 16 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.99 108.30 2.69 0.30 N 167 16 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.96 108.30 3.66 0.30 N 168 16 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.21 119.70 7.51 1.20 Y 169 16 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.21 108.30 3.91 0.30 N 170 16 "C3'" B DC 6 ? ? "O3'" B DC 6 ? ? P B DG 7 ? ? 128.60 119.70 8.90 1.20 Y 171 16 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.29 108.30 3.99 0.30 N 172 16 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 129.05 119.70 9.35 1.20 Y 173 16 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.49 108.30 4.19 0.30 N 174 16 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.12 108.30 2.82 0.30 N 175 17 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.44 108.30 2.14 0.30 N 176 17 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.38 108.30 3.08 0.30 N 177 17 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.95 108.30 3.65 0.30 N 178 17 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 126.91 119.70 7.21 1.20 Y 179 17 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.29 108.30 3.99 0.30 N 180 17 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.17 108.30 1.87 0.30 N 181 17 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.30 108.30 3.00 0.30 N 182 17 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.46 119.70 7.76 1.20 Y 183 17 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.94 108.30 4.64 0.30 N 184 17 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 110.28 108.30 1.98 0.30 N 185 17 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.98 108.30 3.68 0.30 N 186 18 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.67 118.90 3.77 0.60 N 187 18 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.52 108.30 2.22 0.30 N 188 18 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.71 108.30 3.41 0.30 N 189 18 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.51 108.30 2.21 0.30 N 190 18 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.24 108.30 3.94 0.30 N 191 18 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.61 119.70 7.91 1.20 Y 192 18 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.50 108.30 4.20 0.30 N 193 18 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.33 108.30 2.03 0.30 N 194 18 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.44 108.30 2.14 0.30 N 195 18 "C3'" B DC 6 ? ? "O3'" B DC 6 ? ? P B DG 7 ? ? 128.53 119.70 8.83 1.20 Y 196 18 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.42 108.30 3.12 0.30 N 197 18 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 128.32 119.70 8.62 1.20 Y 198 18 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.82 108.30 4.52 0.30 N 199 18 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.01 108.30 2.71 0.30 N 200 19 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.34 108.30 2.04 0.30 N 201 19 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.44 108.30 3.14 0.30 N 202 19 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.48 108.30 2.18 0.30 N 203 19 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 110.36 108.30 2.06 0.30 N 204 19 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.18 119.70 7.48 1.20 Y 205 19 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.53 108.30 4.23 0.30 N 206 19 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.69 108.30 3.39 0.30 N 207 19 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.72 119.70 8.02 1.20 Y 208 19 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.71 108.30 4.41 0.30 N 209 19 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 110.84 108.30 2.54 0.30 N 210 20 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.27 108.30 1.97 0.30 N 211 20 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.19 108.30 2.89 0.30 N 212 20 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.35 108.30 3.05 0.30 N 213 20 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 126.99 119.70 7.29 1.20 Y 214 20 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.29 108.30 3.99 0.30 N 215 20 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.21 108.30 1.91 0.30 N 216 20 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.61 108.30 2.31 0.30 N 217 20 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.01 108.30 3.71 0.30 N 218 20 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 128.14 119.70 8.44 1.20 Y 219 20 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.73 108.30 4.43 0.30 N 220 20 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.10 108.30 2.80 0.30 N 221 21 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.53 108.30 2.23 0.30 N 222 21 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.50 108.30 3.20 0.30 N 223 21 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.04 108.30 3.74 0.30 N 224 21 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.05 119.70 7.35 1.20 Y 225 21 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.91 108.30 4.61 0.30 N 226 21 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 110.64 108.30 2.34 0.30 N 227 21 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.95 119.70 8.25 1.20 Y 228 21 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.61 108.30 4.31 0.30 N 229 21 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.47 108.30 3.17 0.30 N 230 22 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.72 108.30 2.42 0.30 N 231 22 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.88 108.30 3.58 0.30 N 232 22 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.34 119.70 7.64 1.20 Y 233 22 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.23 108.30 2.93 0.30 N 234 22 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.14 108.30 1.84 0.30 N 235 22 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 111.59 108.30 3.29 0.30 N 236 22 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.00 108.30 3.70 0.30 N 237 22 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.38 119.70 7.68 1.20 Y 238 22 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.12 108.30 3.82 0.30 N 239 22 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 110.99 108.30 2.69 0.30 N 240 23 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.72 108.30 2.42 0.30 N 241 23 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.95 108.30 3.65 0.30 N 242 23 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.29 122.90 -3.61 0.60 N 243 23 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.55 108.30 3.25 0.30 N 244 23 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.61 119.70 7.91 1.20 Y 245 23 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.26 108.30 3.96 0.30 N 246 23 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.52 108.30 2.22 0.30 N 247 23 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.41 108.30 3.11 0.30 N 248 23 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.52 119.70 7.82 1.20 Y 249 23 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.96 108.30 4.66 0.30 N 250 23 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.18 108.30 2.88 0.30 N 251 24 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.87 108.30 2.57 0.30 N 252 24 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.66 108.30 3.36 0.30 N 253 24 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.04 108.30 3.74 0.30 N 254 24 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.74 108.30 4.44 0.30 N 255 24 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 110.28 108.30 1.98 0.30 N 256 24 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.69 108.30 3.39 0.30 N 257 24 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.46 119.70 7.76 1.20 Y 258 24 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.72 108.30 4.42 0.30 N 259 24 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.53 108.30 3.23 0.30 N 260 25 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.62 108.30 2.32 0.30 N 261 25 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.33 108.30 2.03 0.30 N 262 25 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 110.57 108.30 2.27 0.30 N 263 25 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.62 119.70 7.92 1.20 Y 264 25 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.61 108.30 3.31 0.30 N 265 25 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 110.52 108.30 2.22 0.30 N 266 25 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.71 108.30 4.41 0.30 N 267 25 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.60 119.70 7.90 1.20 Y 268 25 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 113.04 108.30 4.74 0.30 N 269 25 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.10 108.30 2.80 0.30 N 270 26 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.32 108.30 2.02 0.30 N 271 26 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.96 108.30 2.66 0.30 N 272 26 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.20 122.90 -3.70 0.60 N 273 26 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.01 108.30 2.71 0.30 N 274 26 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.24 119.70 7.54 1.20 Y 275 26 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.71 108.30 3.41 0.30 N 276 26 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 110.64 108.30 2.34 0.30 N 277 26 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.58 108.30 3.28 0.30 N 278 26 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DT 8 ? ? 127.57 119.70 7.87 1.20 Y 279 26 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.53 108.30 4.23 0.30 N 280 26 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.83 108.30 3.53 0.30 N # _ndb_struct_conf_na.entry_id 2KDA _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.522 -0.206 0.131 -4.881 -1.342 0.011 1 A_DC1:DG11_B A 1 ? B 11 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.744 -0.253 0.725 23.391 5.392 -0.180 2 A_DG2:DC10_B A 2 ? B 10 ? 19 1 1 A DT 3 1_555 B DA 9 1_555 -0.159 -0.238 0.504 29.615 -3.634 -2.651 3 A_DT3:DA9_B A 3 ? B 9 ? 20 1 1 A DA 4 1_555 B DT 8 1_555 0.166 -0.053 0.281 40.660 -18.065 0.178 4 A_DA4:DT8_B A 4 ? B 8 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.679 -0.200 -0.609 31.572 -31.189 4.116 5 A_DC5:DG7_B A 5 ? B 7 ? 19 1 1 A 63H 6 1_555 B DC 6 1_555 2.163 -4.284 -2.047 23.931 7.324 82.713 6 A_63H6:DC6_B A 6 ? B 6 ? ? ? 1 A DC 7 1_555 B DG 5 1_555 0.608 -0.234 0.361 -19.965 2.294 -0.170 7 A_DC7:DG5_B A 7 ? B 5 ? 19 1 1 A DA 8 1_555 B DT 4 1_555 0.332 -0.164 0.079 0.197 -3.822 0.937 8 A_DA8:DT4_B A 8 ? B 4 ? 20 1 1 A DT 9 1_555 B DA 3 1_555 -0.510 -0.142 -0.036 -1.570 -1.825 -1.557 9 A_DT9:DA3_B A 9 ? B 3 ? 20 1 1 A DG 10 1_555 B DC 2 1_555 -0.744 -0.289 0.252 5.250 -4.730 -0.126 10 A_DG10:DC2_B A 10 ? B 2 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.731 -0.223 -0.047 2.746 0.919 0.062 11 A_DC11:DG1_B A 11 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 -0.243 -0.173 2.497 -5.059 3.771 25.831 -1.137 -0.492 2.449 8.278 11.107 26.578 1 AA_DC1DG2:DC10DG11_BB A 1 ? B 11 ? A 2 ? B 10 ? 1 A DG 2 1_555 B DC 10 1_555 A DT 3 1_555 B DA 9 1_555 -0.238 -0.893 3.290 -0.422 2.012 32.590 -1.937 0.351 3.233 3.582 0.751 32.653 2 AA_DG2DT3:DA9DC10_BB A 2 ? B 10 ? A 3 ? B 9 ? 1 A DT 3 1_555 B DA 9 1_555 A DA 4 1_555 B DT 8 1_555 0.269 -0.436 3.103 3.659 0.004 39.279 -0.647 0.013 3.115 0.007 -5.428 39.442 3 AA_DT3DA4:DT8DA9_BB A 3 ? B 9 ? A 4 ? B 8 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 0.463 -0.019 3.585 7.034 -6.470 38.769 0.801 0.223 3.570 -9.570 -10.405 39.886 4 AA_DA4DC5:DG7DT8_BB A 4 ? B 8 ? A 5 ? B 7 ? 1 A DC 5 1_555 B DG 7 1_555 A 63H 6 1_555 B DC 6 1_555 -2.504 4.553 -1.687 162.338 -0.816 -70.881 -2.295 -1.423 1.065 0.427 84.852 -165.632 5 AA_DC563H6:DC6DG7_BB A 5 ? B 7 ? A 6 ? B 6 ? 1 A 63H 6 1_555 B DC 6 1_555 A DC 7 1_555 B DG 5 1_555 2.440 3.744 -0.628 -132.025 105.303 -149.231 -1.816 1.291 -0.719 -52.775 -66.168 -177.054 6 AA_63H6DC7:DG5DC6_BB A 6 ? B 6 ? A 7 ? B 5 ? 1 A DC 7 1_555 B DG 5 1_555 A DA 8 1_555 B DT 4 1_555 -0.012 -0.487 2.889 -3.957 1.998 27.333 -1.443 -0.816 2.820 4.193 8.304 27.683 7 AA_DC7DA8:DT4DG5_BB A 7 ? B 5 ? A 8 ? B 4 ? 1 A DA 8 1_555 B DT 4 1_555 A DT 9 1_555 B DA 3 1_555 -0.109 -1.795 3.340 -0.043 -3.169 27.865 -2.917 0.215 3.518 -6.554 0.090 28.041 8 AA_DA8DT9:DA3DT4_BB A 8 ? B 4 ? A 9 ? B 3 ? 1 A DT 9 1_555 B DA 3 1_555 A DG 10 1_555 B DC 2 1_555 0.299 -1.340 2.996 0.978 7.105 31.647 -3.491 -0.386 2.648 12.824 -1.765 32.429 9 AA_DT9DG10:DC2DA3_BB A 9 ? B 3 ? A 10 ? B 2 ? 1 A DG 10 1_555 B DC 2 1_555 A DC 11 1_555 B DG 1 1_555 0.175 -0.768 3.894 1.168 -17.159 34.598 1.500 -0.085 3.848 -26.893 -1.831 38.520 10 AA_DG10DC11:DG1DC2_BB A 10 ? B 2 ? A 11 ? B 1 ? #