data_2KNV # _entry.id 2KNV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KNV pdb_00002knv 10.2210/pdb2knv/pdb RCSB RCSB101352 ? ? WWPDB D_1000101352 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2K0B PDB 'monomeric unit' unspecified 2JY7 PDB 'monomeric unit RDC refined' unspecified 15591 BMRB 'Original assignment' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KNV _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-09-04 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Long, J.E.' 1 'Searle, M.S.' 2 # _citation.id primary _citation.title 'Dimerisation of the UBA Domain of p62 Inhibits Ubiquitin Binding and Regulates NF-kappaB Signalling' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 1089-8638 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19931284 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2009.11.032 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Long, J.' 1 ? primary 'Garner, T.P.' 2 ? primary 'Pandya, M.J.' 3 ? primary 'Craven, C.J.' 4 ? primary 'Chen, P.' 5 ? primary 'Shaw, B.' 6 ? primary 'Williamson, M.P.' 7 ? primary 'Layfield, R.' 8 ? primary 'Searle, M.S.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Sequestosome-1 _entity.formula_weight 5744.406 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBA domain, UNP residues 387-436' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Phosphotyrosine-independent ligand for the Lck SH2 domain of 62 kDa, Ubiquitin-binding protein p62, EBI3-associated protein of 60 kDa, p60, EBIAP ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH _entity_poly.pdbx_seq_one_letter_code_can GSPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 PRO n 1 5 GLU n 1 6 ALA n 1 7 ASP n 1 8 PRO n 1 9 ARG n 1 10 LEU n 1 11 ILE n 1 12 GLU n 1 13 SER n 1 14 LEU n 1 15 SER n 1 16 GLN n 1 17 MET n 1 18 LEU n 1 19 SER n 1 20 MET n 1 21 GLY n 1 22 PHE n 1 23 SER n 1 24 ASP n 1 25 GLU n 1 26 GLY n 1 27 GLY n 1 28 TRP n 1 29 LEU n 1 30 THR n 1 31 ARG n 1 32 LEU n 1 33 LEU n 1 34 GLN n 1 35 THR n 1 36 LYS n 1 37 ASN n 1 38 TYR n 1 39 ASP n 1 40 ILE n 1 41 GLY n 1 42 ALA n 1 43 ALA n 1 44 LEU n 1 45 ASP n 1 46 THR n 1 47 ILE n 1 48 GLN n 1 49 TYR n 1 50 SER n 1 51 LYS n 1 52 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SQSTM1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant '(DE3)' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector PGEX-4T-1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SQSTM_HUMAN _struct_ref.pdbx_db_accession Q13501 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH _struct_ref.pdbx_align_begin 387 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KNV A 3 ? 52 ? Q13501 387 ? 436 ? 3 52 2 1 2KNV B 3 ? 52 ? Q13501 387 ? 436 ? 3 52 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KNV GLY A 1 ? UNP Q13501 ? ? 'expression tag' 1 1 1 2KNV SER A 2 ? UNP Q13501 ? ? 'expression tag' 2 2 2 2KNV GLY B 1 ? UNP Q13501 ? ? 'expression tag' 1 3 2 2KNV SER B 2 ? UNP Q13501 ? ? 'expression tag' 2 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type 'Half-filter Noesy' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;0.3 mM [U-99% 13C; U-99% 15N] UBA-1, 0.6 mM UBA-2, 50 mM potassium phosphate-3, 50 mM sodium chloride-4, 0.04 % sodium azide-5, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2KNV _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KNV _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KNV _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 2.1 1 CCPN 'data analysis' Ccpnmr 1.15 2 'Alexandre Bonvin' 'structure solution' HADDOCK 2.0 3 'Alexandre Bonvin' refinement HADDOCK 2.0 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Dimer structure of the p62 UBA domain solved using intermolecular NOEs' _exptl.entry_id 2KNV _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KNV _struct.title 'NMR dimer structure of the UBA domain of p62 (SQSTM1)' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KNV _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'Ubiquitin binding, Ubiquitin-Associated domain, Paget s disease of bone, helical bundle, dimer, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 7 ? GLY A 21 ? ASP A 7 GLY A 21 1 ? 15 HELX_P HELX_P2 2 GLY A 27 ? LYS A 36 ? GLY A 27 LYS A 36 1 ? 10 HELX_P HELX_P3 3 ASP A 39 ? ILE A 47 ? ASP A 39 ILE A 47 1 ? 9 HELX_P HELX_P4 4 ILE B 11 ? MET B 20 ? ILE B 11 MET B 20 1 ? 10 HELX_P HELX_P5 5 TRP B 28 ? LYS B 36 ? TRP B 28 LYS B 36 1 ? 9 HELX_P HELX_P6 6 ASP B 39 ? ILE B 47 ? ASP B 39 ILE B 47 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2KNV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 HIS 52 52 52 HIS HIS A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 PRO 3 3 3 PRO PRO B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 SER 13 13 13 SER SER B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 GLN 16 16 16 GLN GLN B . n B 1 17 MET 17 17 17 MET MET B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 SER 19 19 19 SER SER B . n B 1 20 MET 20 20 20 MET MET B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ASP 24 24 24 ASP ASP B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 TRP 28 28 28 TRP TRP B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 THR 30 30 30 THR THR B . n B 1 31 ARG 31 31 31 ARG ARG B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 GLN 34 34 34 GLN GLN B . n B 1 35 THR 35 35 35 THR THR B . n B 1 36 LYS 36 36 36 LYS LYS B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 TYR 38 38 38 TYR TYR B . n B 1 39 ASP 39 39 39 ASP ASP B . n B 1 40 ILE 40 40 40 ILE ILE B . n B 1 41 GLY 41 41 41 GLY GLY B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 ASP 45 45 45 ASP ASP B . n B 1 46 THR 46 46 46 THR THR B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLN 48 48 48 GLN GLN B . n B 1 49 TYR 49 49 49 TYR TYR B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 LYS 51 51 51 LYS LYS B . n B 1 52 HIS 52 52 52 HIS HIS B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id UBA-1 0.3 ? mM '[U-99% 13C; U-99% 15N]' 1 UBA-2 0.6 ? mM ? 1 'potassium phosphate-3' 50 ? mM ? 1 'sodium chloride-4' 50 ? mM ? 1 'sodium azide-5' 0.04 ? % ? 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ2 A LYS 36 ? ? OE2 B GLU 25 ? ? 1.56 2 1 OE2 A GLU 25 ? ? HG1 B THR 35 ? ? 1.60 3 2 OD2 A ASP 7 ? ? HH21 A ARG 9 ? ? 1.57 4 2 HZ2 A LYS 36 ? ? OE2 B GLU 25 ? ? 1.59 5 3 HZ2 A LYS 36 ? ? OE2 B GLU 25 ? ? 1.58 6 4 HZ2 A LYS 36 ? ? OE2 B GLU 25 ? ? 1.57 7 5 OE2 A GLU 25 ? ? HZ1 B LYS 36 ? ? 1.56 8 6 OD2 A ASP 7 ? ? HH21 A ARG 9 ? ? 1.59 9 6 OD2 B ASP 7 ? ? HH21 B ARG 9 ? ? 1.60 10 7 OE2 A GLU 25 ? ? HZ2 B LYS 36 ? ? 1.58 11 8 OE2 A GLU 25 ? ? HZ1 B LYS 36 ? ? 1.56 12 8 OD2 B ASP 7 ? ? HH21 B ARG 9 ? ? 1.59 13 9 HZ3 A LYS 36 ? ? OE2 B GLU 25 ? ? 1.56 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 37 ? ? 66.62 -178.05 2 1 GLN A 48 ? ? 71.66 -47.06 3 1 TYR A 49 ? ? -53.78 100.14 4 1 ASN B 37 ? ? 69.99 171.39 5 1 TYR B 38 ? ? -81.12 38.39 6 1 GLN B 48 ? ? 68.77 -14.17 7 2 ASN A 37 ? ? 69.00 168.11 8 2 TYR A 38 ? ? -81.94 36.51 9 2 GLN A 48 ? ? 69.50 -38.58 10 2 TYR A 49 ? ? -66.38 79.21 11 2 GLU B 25 ? ? -104.77 -60.78 12 2 ASN B 37 ? ? 70.32 168.74 13 2 TYR B 38 ? ? -87.31 35.47 14 2 GLN B 48 ? ? 71.36 -40.27 15 2 TYR B 49 ? ? -60.28 99.75 16 3 ASN A 37 ? ? 67.26 177.53 17 3 TYR A 38 ? ? -87.16 36.86 18 3 GLN A 48 ? ? 69.43 -44.41 19 3 SER A 50 ? ? -143.63 -30.92 20 3 ASN B 37 ? ? 67.65 166.91 21 3 GLN B 48 ? ? 65.57 -7.22 22 3 LYS B 51 ? ? -118.99 -70.89 23 4 ASN A 37 ? ? 73.49 163.53 24 4 TYR A 38 ? ? -81.72 36.21 25 4 GLN A 48 ? ? 70.50 -51.20 26 4 ASN B 37 ? ? 67.64 179.74 27 4 TYR B 38 ? ? -96.16 30.34 28 5 ASN A 37 ? ? 69.53 169.32 29 5 TYR A 38 ? ? -85.89 41.85 30 5 GLN A 48 ? ? 71.95 -43.37 31 5 TYR A 49 ? ? -69.09 90.21 32 5 SER B 23 ? ? -172.92 126.41 33 5 ASN B 37 ? ? 69.28 -177.92 34 5 TYR B 38 ? ? -94.62 34.28 35 5 GLN B 48 ? ? 73.49 -42.16 36 5 TYR B 49 ? ? -57.32 97.89 37 5 SER B 50 ? ? -136.59 -39.99 38 6 ASN A 37 ? ? 68.69 175.26 39 6 GLN A 48 ? ? 69.49 -30.31 40 6 LYS A 51 ? ? -122.20 -62.36 41 6 ASN B 37 ? ? 69.45 178.67 42 6 TYR B 38 ? ? -92.27 35.37 43 6 GLN B 48 ? ? 71.34 -51.25 44 6 TYR B 49 ? ? -54.21 100.02 45 6 LYS B 51 ? ? -94.34 -69.14 46 7 ASN A 37 ? ? 69.03 171.83 47 7 TYR A 38 ? ? -83.73 33.28 48 7 GLN A 48 ? ? 71.94 -39.02 49 7 TYR A 49 ? ? -57.15 97.79 50 7 LYS A 51 ? ? -121.53 -64.92 51 7 ASN B 37 ? ? 69.73 170.37 52 7 TYR B 38 ? ? -84.90 34.78 53 7 GLN B 48 ? ? 71.07 -37.52 54 7 TYR B 49 ? ? -63.60 88.57 55 8 ASN A 37 ? ? 69.98 173.14 56 8 TYR A 38 ? ? -82.72 34.21 57 8 GLN A 48 ? ? 68.54 -41.60 58 8 TYR A 49 ? ? -64.87 84.73 59 8 LYS A 51 ? ? -110.87 -73.06 60 8 ASN B 37 ? ? 64.55 -175.76 61 8 TYR B 38 ? ? -86.76 35.07 62 8 GLN B 48 ? ? 70.85 -42.82 63 8 TYR B 49 ? ? -61.27 93.58 64 9 ASN A 37 ? ? 67.73 -177.29 65 9 GLN A 48 ? ? 68.92 -53.13 66 9 TYR A 49 ? ? -55.65 94.20 67 9 ASN B 37 ? ? 70.84 175.03 68 9 GLN B 48 ? ? 71.33 -53.88 69 9 SER B 50 ? ? -144.15 -69.83 70 10 ASN A 37 ? ? 69.85 173.61 71 10 TYR A 38 ? ? -82.60 46.73 72 10 GLN A 48 ? ? 71.30 -50.17 73 10 LYS A 51 ? ? -102.15 -70.47 74 10 ASN B 37 ? ? 70.77 176.02 75 10 TYR B 38 ? ? -85.64 45.46 76 10 GLN B 48 ? ? 71.80 -41.34 77 10 TYR B 49 ? ? -64.32 83.16 78 10 LYS B 51 ? ? -121.11 -63.75 #