data_2LJ4 # _entry.id 2LJ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LJ4 pdb_00002lj4 10.2210/pdb2lj4/pdb RCSB RCSB102444 ? ? BMRB 17918 ? ? WWPDB D_1000102444 ? ? # _pdbx_database_related.db_id 17918 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LJ4 _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-09-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sun, L.' 1 'Lin, D.' 2 'Zhao, Y.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Solution structural analysis of the single-domain parvulin TbPin1.' 'Plos One' 7 e43017 e43017 2012 ? US 1932-6203 ? ? 22900083 10.1371/journal.pone.0043017 1 'Solution Structural Analysis of the Single-Domain Parvulin TbPin1' 'Plos One' 7 e43017 e43017 2012 ? US 1932-6203 ? ? ? 10.1371/journal.pone.0043017.g001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, L.' 1 ? primary 'Wu, X.' 2 ? primary 'Peng, Y.' 3 ? primary 'Goh, J.Y.' 4 ? primary 'Liou, Y.-C.' 5 ? primary 'Lin, D.' 6 ? primary 'Zhao, Y.' 7 ? 1 'Sun, L.' 8 ? 1 'Wu, X.' 9 ? 1 'Peng, Y.' 10 ? 1 'Goh, J.Y.' 11 ? 1 'Liou, T.-C.' 12 ? 1 'Lin, D.' 13 ? 1 'Zhao, Y.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Peptidyl-prolyl cis-trans isomerase/rotamase, putative' _entity.formula_weight 12515.032 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 5.2.1.8 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prolyl Cis/trans Isomerase TbPIN1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSG EMMKPFEDAVRALKIGDISPIVQTDSGLHIIKRLA ; _entity_poly.pdbx_seq_one_letter_code_can ;MSEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSG EMMKPFEDAVRALKIGDISPIVQTDSGLHIIKRLA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 GLU n 1 4 LYS n 1 5 LEU n 1 6 ARG n 1 7 ALA n 1 8 ALA n 1 9 HIS n 1 10 LEU n 1 11 LEU n 1 12 VAL n 1 13 LYS n 1 14 PHE n 1 15 SER n 1 16 GLY n 1 17 SER n 1 18 ARG n 1 19 ASN n 1 20 PRO n 1 21 VAL n 1 22 SER n 1 23 ARG n 1 24 ARG n 1 25 THR n 1 26 GLY n 1 27 ASP n 1 28 SER n 1 29 THR n 1 30 ALA n 1 31 ASP n 1 32 VAL n 1 33 THR n 1 34 TYR n 1 35 GLU n 1 36 ASP n 1 37 ALA n 1 38 ILE n 1 39 LYS n 1 40 GLU n 1 41 LEU n 1 42 GLN n 1 43 LYS n 1 44 TRP n 1 45 SER n 1 46 GLN n 1 47 ARG n 1 48 ILE n 1 49 ALA n 1 50 SER n 1 51 GLY n 1 52 GLU n 1 53 VAL n 1 54 SER n 1 55 PHE n 1 56 GLU n 1 57 GLU n 1 58 ALA n 1 59 ALA n 1 60 SER n 1 61 GLN n 1 62 ARG n 1 63 SER n 1 64 ASP n 1 65 CYS n 1 66 GLY n 1 67 SER n 1 68 TYR n 1 69 ALA n 1 70 SER n 1 71 GLY n 1 72 GLY n 1 73 ASP n 1 74 LEU n 1 75 GLY n 1 76 PHE n 1 77 PHE n 1 78 SER n 1 79 SER n 1 80 GLY n 1 81 GLU n 1 82 MET n 1 83 MET n 1 84 LYS n 1 85 PRO n 1 86 PHE n 1 87 GLU n 1 88 ASP n 1 89 ALA n 1 90 VAL n 1 91 ARG n 1 92 ALA n 1 93 LEU n 1 94 LYS n 1 95 ILE n 1 96 GLY n 1 97 ASP n 1 98 ILE n 1 99 SER n 1 100 PRO n 1 101 ILE n 1 102 VAL n 1 103 GLN n 1 104 THR n 1 105 ASP n 1 106 SER n 1 107 GLY n 1 108 LEU n 1 109 HIS n 1 110 ILE n 1 111 ILE n 1 112 LYS n 1 113 ARG n 1 114 LEU n 1 115 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TbPIN1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Trypanosoma brucei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5691 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pET28b _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q57YG1_9TRYP _struct_ref.pdbx_db_accession Q57YG1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSG EMMKPFEDAVRALKIGDISPIVQTDSGLHIIKRLA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LJ4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q57YG1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 115 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 118 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HNCA' 1 6 1 '3D HN(CO)CA' 1 7 1 '3D HNCO' 1 8 1 '3D HCACO' 1 9 1 '3D HBHA(CO)NH' 1 10 1 '3D H(CCO)NH' 1 11 1 '3D 1H-15N TOCSY' 1 12 1 '3D 1H-15N NOESY' 1 13 1 '3D C(CO)NH' 1 14 1 '3D HCCH-TOCSY' 1 15 1 '3D CCH-TOCSY' 1 16 1 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure 10132 _pdbx_nmr_exptl_sample_conditions.pressure_units 5 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.8-1.0 mM [U-99% 13C; U-99% 15N] Prolyl Cis/trans Isomerase TbPIN1-1, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2LJ4 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LJ4 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LJ4 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_software.authors 'Brunger A. T. et.al.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.ordinal 1 _pdbx_nmr_software.version 1.2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LJ4 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LJ4 _struct.title 'Solution structure of the TbPIN1' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LJ4 _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'TbPIN1, ISOMERASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 33 ? GLY A 51 ? THR A 36 GLY A 54 1 ? 19 HELX_P HELX_P2 2 SER A 54 ? SER A 63 ? SER A 57 SER A 66 1 ? 10 HELX_P HELX_P3 3 CYS A 65 ? SER A 70 ? CYS A 68 SER A 73 5 ? 6 HELX_P HELX_P4 4 MET A 83 ? ARG A 91 ? MET A 86 ARG A 94 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 73 ? SER A 78 ? ASP A 76 SER A 81 A 2 LYS A 4 ? VAL A 12 ? LYS A 7 VAL A 15 A 3 LEU A 108 ? ARG A 113 ? LEU A 111 ARG A 116 A 4 VAL A 102 ? GLN A 103 ? VAL A 105 GLN A 106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 74 ? O LEU A 77 N ALA A 7 ? N ALA A 10 A 2 3 N ALA A 8 ? N ALA A 11 O LYS A 112 ? O LYS A 115 A 3 4 O HIS A 109 ? O HIS A 112 N VAL A 102 ? N VAL A 105 # _atom_sites.entry_id 2LJ4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 4 4 MET MET A . n A 1 2 SER 2 5 5 SER SER A . n A 1 3 GLU 3 6 6 GLU GLU A . n A 1 4 LYS 4 7 7 LYS LYS A . n A 1 5 LEU 5 8 8 LEU LEU A . n A 1 6 ARG 6 9 9 ARG ARG A . n A 1 7 ALA 7 10 10 ALA ALA A . n A 1 8 ALA 8 11 11 ALA ALA A . n A 1 9 HIS 9 12 12 HIS HIS A . n A 1 10 LEU 10 13 13 LEU LEU A . n A 1 11 LEU 11 14 14 LEU LEU A . n A 1 12 VAL 12 15 15 VAL VAL A . n A 1 13 LYS 13 16 16 LYS LYS A . n A 1 14 PHE 14 17 17 PHE PHE A . n A 1 15 SER 15 18 18 SER SER A . n A 1 16 GLY 16 19 19 GLY GLY A . n A 1 17 SER 17 20 20 SER SER A . n A 1 18 ARG 18 21 21 ARG ARG A . n A 1 19 ASN 19 22 22 ASN ASN A . n A 1 20 PRO 20 23 23 PRO PRO A . n A 1 21 VAL 21 24 24 VAL VAL A . n A 1 22 SER 22 25 25 SER SER A . n A 1 23 ARG 23 26 26 ARG ARG A . n A 1 24 ARG 24 27 27 ARG ARG A . n A 1 25 THR 25 28 28 THR THR A . n A 1 26 GLY 26 29 29 GLY GLY A . n A 1 27 ASP 27 30 30 ASP ASP A . n A 1 28 SER 28 31 31 SER SER A . n A 1 29 THR 29 32 32 THR THR A . n A 1 30 ALA 30 33 33 ALA ALA A . n A 1 31 ASP 31 34 34 ASP ASP A . n A 1 32 VAL 32 35 35 VAL VAL A . n A 1 33 THR 33 36 36 THR THR A . n A 1 34 TYR 34 37 37 TYR TYR A . n A 1 35 GLU 35 38 38 GLU GLU A . n A 1 36 ASP 36 39 39 ASP ASP A . n A 1 37 ALA 37 40 40 ALA ALA A . n A 1 38 ILE 38 41 41 ILE ILE A . n A 1 39 LYS 39 42 42 LYS LYS A . n A 1 40 GLU 40 43 43 GLU GLU A . n A 1 41 LEU 41 44 44 LEU LEU A . n A 1 42 GLN 42 45 45 GLN GLN A . n A 1 43 LYS 43 46 46 LYS LYS A . n A 1 44 TRP 44 47 47 TRP TRP A . n A 1 45 SER 45 48 48 SER SER A . n A 1 46 GLN 46 49 49 GLN GLN A . n A 1 47 ARG 47 50 50 ARG ARG A . n A 1 48 ILE 48 51 51 ILE ILE A . n A 1 49 ALA 49 52 52 ALA ALA A . n A 1 50 SER 50 53 53 SER SER A . n A 1 51 GLY 51 54 54 GLY GLY A . n A 1 52 GLU 52 55 55 GLU GLU A . n A 1 53 VAL 53 56 56 VAL VAL A . n A 1 54 SER 54 57 57 SER SER A . n A 1 55 PHE 55 58 58 PHE PHE A . n A 1 56 GLU 56 59 59 GLU GLU A . n A 1 57 GLU 57 60 60 GLU GLU A . n A 1 58 ALA 58 61 61 ALA ALA A . n A 1 59 ALA 59 62 62 ALA ALA A . n A 1 60 SER 60 63 63 SER SER A . n A 1 61 GLN 61 64 64 GLN GLN A . n A 1 62 ARG 62 65 65 ARG ARG A . n A 1 63 SER 63 66 66 SER SER A . n A 1 64 ASP 64 67 67 ASP ASP A . n A 1 65 CYS 65 68 68 CYS CYS A . n A 1 66 GLY 66 69 69 GLY GLY A . n A 1 67 SER 67 70 70 SER SER A . n A 1 68 TYR 68 71 71 TYR TYR A . n A 1 69 ALA 69 72 72 ALA ALA A . n A 1 70 SER 70 73 73 SER SER A . n A 1 71 GLY 71 74 74 GLY GLY A . n A 1 72 GLY 72 75 75 GLY GLY A . n A 1 73 ASP 73 76 76 ASP ASP A . n A 1 74 LEU 74 77 77 LEU LEU A . n A 1 75 GLY 75 78 78 GLY GLY A . n A 1 76 PHE 76 79 79 PHE PHE A . n A 1 77 PHE 77 80 80 PHE PHE A . n A 1 78 SER 78 81 81 SER SER A . n A 1 79 SER 79 82 82 SER SER A . n A 1 80 GLY 80 83 83 GLY GLY A . n A 1 81 GLU 81 84 84 GLU GLU A . n A 1 82 MET 82 85 85 MET MET A . n A 1 83 MET 83 86 86 MET MET A . n A 1 84 LYS 84 87 87 LYS LYS A . n A 1 85 PRO 85 88 88 PRO PRO A . n A 1 86 PHE 86 89 89 PHE PHE A . n A 1 87 GLU 87 90 90 GLU GLU A . n A 1 88 ASP 88 91 91 ASP ASP A . n A 1 89 ALA 89 92 92 ALA ALA A . n A 1 90 VAL 90 93 93 VAL VAL A . n A 1 91 ARG 91 94 94 ARG ARG A . n A 1 92 ALA 92 95 95 ALA ALA A . n A 1 93 LEU 93 96 96 LEU LEU A . n A 1 94 LYS 94 97 97 LYS LYS A . n A 1 95 ILE 95 98 98 ILE ILE A . n A 1 96 GLY 96 99 99 GLY GLY A . n A 1 97 ASP 97 100 100 ASP ASP A . n A 1 98 ILE 98 101 101 ILE ILE A . n A 1 99 SER 99 102 102 SER SER A . n A 1 100 PRO 100 103 103 PRO PRO A . n A 1 101 ILE 101 104 104 ILE ILE A . n A 1 102 VAL 102 105 105 VAL VAL A . n A 1 103 GLN 103 106 106 GLN GLN A . n A 1 104 THR 104 107 107 THR THR A . n A 1 105 ASP 105 108 108 ASP ASP A . n A 1 106 SER 106 109 109 SER SER A . n A 1 107 GLY 107 110 110 GLY GLY A . n A 1 108 LEU 108 111 111 LEU LEU A . n A 1 109 HIS 109 112 112 HIS HIS A . n A 1 110 ILE 110 113 113 ILE ILE A . n A 1 111 ILE 111 114 114 ILE ILE A . n A 1 112 LYS 112 115 115 LYS LYS A . n A 1 113 ARG 113 116 116 ARG ARG A . n A 1 114 LEU 114 117 117 LEU LEU A . n A 1 115 ALA 115 118 118 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-22 2 'Structure model' 1 1 2019-12-25 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.component 'Prolyl Cis/trans Isomerase TbPIN1-1' _pdbx_nmr_exptl_sample.concentration ? _pdbx_nmr_exptl_sample.concentration_range 0.8-1.0 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-99% 13C; U-99% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LJ4 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1898 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 711 _pdbx_nmr_constraints.NOE_long_range_total_count 447 _pdbx_nmr_constraints.NOE_medium_range_total_count 293 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 447 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ3 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.58 2 4 HZ1 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.55 3 5 HZ2 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.55 4 6 HE A ARG 116 ? ? OXT A ALA 118 ? ? 1.59 5 7 HZ2 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.52 6 8 HZ1 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.56 7 12 HZ3 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.54 8 15 HZ3 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.57 9 16 OD1 A ASP 39 ? ? HZ2 A LYS 42 ? ? 1.59 10 18 H2 A MET 4 ? ? OE1 A GLU 6 ? ? 1.59 11 19 HZ3 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.56 12 20 HZ3 A LYS 16 ? ? OD2 A ASP 67 ? ? 1.57 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 8 CE1 A TYR 37 ? ? CZ A TYR 37 ? ? 1.476 1.381 0.095 0.013 N 2 8 CZ A TYR 37 ? ? CE2 A TYR 37 ? ? 1.286 1.381 -0.095 0.013 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? 63.86 89.25 2 1 SER A 20 ? ? -90.83 46.84 3 1 ARG A 21 ? ? 70.87 -35.55 4 1 ASP A 30 ? ? -94.27 -67.98 5 1 MET A 85 ? ? -107.94 -144.97 6 1 ILE A 104 ? ? -43.10 107.95 7 2 ARG A 21 ? ? 72.50 -20.04 8 2 ASP A 30 ? ? -115.93 -71.36 9 2 GLU A 84 ? ? -83.55 46.71 10 2 MET A 85 ? ? -137.68 -122.59 11 2 ILE A 104 ? ? -39.48 113.34 12 2 SER A 109 ? ? -91.51 -61.37 13 3 SER A 5 ? ? -144.83 -80.37 14 3 SER A 20 ? ? -77.44 37.21 15 3 ARG A 21 ? ? 68.31 -36.17 16 3 PRO A 23 ? ? -81.99 -151.72 17 3 VAL A 24 ? ? 64.06 111.17 18 3 ASP A 30 ? ? -144.79 -68.41 19 3 MET A 85 ? ? -137.41 -122.02 20 3 SER A 109 ? ? -100.30 -60.53 21 4 SER A 18 ? ? -53.16 109.50 22 4 SER A 20 ? ? -84.46 38.76 23 4 ARG A 21 ? ? 72.86 -34.00 24 4 ASP A 30 ? ? -91.72 -65.59 25 4 GLU A 84 ? ? -91.21 34.27 26 4 MET A 85 ? ? -131.05 -123.16 27 4 ILE A 98 ? ? -38.05 118.09 28 4 ILE A 104 ? ? -39.86 109.86 29 5 SER A 5 ? ? -55.04 -75.96 30 5 SER A 18 ? ? -54.13 109.51 31 5 SER A 20 ? ? -90.12 40.17 32 5 ARG A 21 ? ? 75.38 -34.20 33 5 ASP A 30 ? ? -107.45 -139.18 34 5 MET A 85 ? ? -99.06 -105.44 35 5 ILE A 104 ? ? -44.62 108.28 36 6 GLU A 6 ? ? -147.46 -17.59 37 6 SER A 20 ? ? -88.68 45.59 38 6 ARG A 21 ? ? 75.80 -32.50 39 6 ASP A 30 ? ? -113.78 -79.22 40 6 GLU A 84 ? ? -97.99 48.18 41 6 MET A 85 ? ? -135.58 -101.22 42 6 ILE A 104 ? ? -50.11 100.20 43 6 SER A 109 ? ? -97.50 -60.76 44 7 SER A 18 ? ? -52.62 109.80 45 7 SER A 20 ? ? -91.60 48.67 46 7 ARG A 21 ? ? 71.27 -34.46 47 7 ASP A 30 ? ? -131.03 -70.07 48 7 MET A 85 ? ? -122.13 -131.78 49 7 MET A 86 ? ? -91.97 -93.30 50 7 LYS A 87 ? ? -163.58 -56.43 51 8 SER A 18 ? ? -54.27 109.49 52 8 SER A 20 ? ? -95.03 39.44 53 8 ARG A 21 ? ? 74.77 -34.29 54 8 ASP A 30 ? ? -98.48 -71.21 55 8 MET A 85 ? ? -99.17 -108.80 56 8 SER A 109 ? ? -93.59 -60.81 57 9 SER A 20 ? ? -81.84 46.98 58 9 ARG A 21 ? ? 69.32 -36.29 59 9 PRO A 23 ? ? -64.04 -163.05 60 9 VAL A 24 ? ? 66.74 119.84 61 9 ASP A 30 ? ? -99.52 -64.19 62 9 GLU A 84 ? ? -84.93 41.20 63 9 MET A 85 ? ? -136.82 -127.41 64 9 SER A 109 ? ? -92.35 -61.14 65 10 SER A 20 ? ? -91.11 43.30 66 10 ARG A 21 ? ? 73.45 -32.79 67 10 PRO A 23 ? ? -82.69 41.35 68 10 ASP A 30 ? ? -141.95 -72.00 69 10 SER A 70 ? ? -65.84 0.46 70 10 MET A 85 ? ? -86.22 -92.37 71 11 SER A 18 ? ? -51.67 109.35 72 11 SER A 20 ? ? -90.20 34.24 73 11 ARG A 21 ? ? 72.94 -30.33 74 11 ASP A 30 ? ? -101.76 -76.15 75 11 GLU A 84 ? ? -104.24 59.96 76 11 MET A 85 ? ? -144.03 -97.46 77 11 ILE A 104 ? ? -39.26 112.19 78 12 SER A 5 ? ? -76.79 -84.40 79 12 SER A 20 ? ? -90.19 40.15 80 12 ARG A 21 ? ? 72.20 -32.85 81 12 ASP A 30 ? ? -94.88 -69.39 82 12 GLU A 84 ? ? -117.02 57.80 83 12 MET A 85 ? ? -146.42 -100.16 84 13 SER A 18 ? ? -50.84 108.69 85 13 ARG A 21 ? ? 72.60 -34.98 86 13 PRO A 23 ? ? -66.03 -156.70 87 13 VAL A 24 ? ? 64.99 112.97 88 13 ASP A 30 ? ? -121.68 -72.29 89 13 GLU A 84 ? ? -117.76 62.84 90 13 MET A 85 ? ? -139.49 -123.90 91 13 ILE A 104 ? ? -50.47 106.38 92 14 SER A 20 ? ? -86.70 33.50 93 14 ARG A 21 ? ? 71.25 -34.82 94 14 ASP A 30 ? ? -92.56 -69.85 95 14 MET A 85 ? ? -126.84 -126.99 96 14 ILE A 104 ? ? -52.05 108.45 97 14 SER A 109 ? ? -92.90 -61.37 98 15 SER A 5 ? ? -92.22 -65.40 99 15 SER A 18 ? ? -52.18 109.61 100 15 SER A 20 ? ? -84.08 34.26 101 15 ARG A 21 ? ? 73.03 -28.61 102 15 ASP A 30 ? ? -99.59 -69.13 103 15 MET A 85 ? ? -86.14 -97.48 104 15 ILE A 104 ? ? -48.99 108.48 105 15 SER A 109 ? ? -90.95 -60.63 106 16 SER A 18 ? ? -53.35 109.97 107 16 SER A 20 ? ? -81.49 46.24 108 16 ARG A 21 ? ? 68.95 -37.01 109 16 PRO A 23 ? ? -82.39 -156.11 110 16 VAL A 24 ? ? 60.07 114.12 111 16 ASP A 30 ? ? -114.56 -135.27 112 16 SER A 70 ? ? -68.96 0.56 113 16 GLU A 84 ? ? -101.14 47.01 114 16 MET A 85 ? ? -135.82 -127.21 115 16 ILE A 104 ? ? -51.67 100.78 116 17 ARG A 21 ? ? 71.79 -33.39 117 17 PRO A 23 ? ? -79.84 45.46 118 17 ASP A 30 ? ? -101.24 -61.23 119 17 MET A 85 ? ? -104.16 -122.60 120 17 ILE A 104 ? ? -46.47 108.54 121 17 SER A 109 ? ? -96.78 -60.93 122 18 SER A 20 ? ? -76.29 23.07 123 18 ARG A 21 ? ? 69.55 -35.28 124 18 PRO A 23 ? ? -68.31 -159.27 125 18 VAL A 24 ? ? 62.25 107.16 126 18 ASP A 30 ? ? -105.13 -66.19 127 18 MET A 85 ? ? -95.15 -105.05 128 18 ILE A 104 ? ? -39.64 100.33 129 18 SER A 109 ? ? -92.33 -60.96 130 19 SER A 5 ? ? 61.96 82.91 131 19 SER A 20 ? ? -90.00 35.05 132 19 ARG A 21 ? ? 71.82 -34.26 133 19 PRO A 23 ? ? -80.83 49.16 134 19 ASP A 30 ? ? -95.03 -65.99 135 19 GLU A 84 ? ? -90.59 45.19 136 19 MET A 85 ? ? -137.66 -108.28 137 19 SER A 109 ? ? -90.68 -61.62 138 20 SER A 18 ? ? -53.44 108.12 139 20 SER A 20 ? ? -85.03 49.44 140 20 ARG A 21 ? ? 71.66 -32.99 141 20 ASP A 30 ? ? -93.00 -63.77 142 20 MET A 85 ? ? -124.51 -105.31 143 20 ILE A 104 ? ? -46.07 105.09 #