data_2P3C # _entry.id 2P3C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2P3C pdb_00002p3c 10.2210/pdb2p3c/pdb RCSB RCSB041913 ? ? WWPDB D_1000041913 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2013-02-27 6 'Structure model' 1 5 2017-10-18 7 'Structure model' 1 6 2021-10-20 8 'Structure model' 1 7 2024-04-03 9 'Structure model' 1 8 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' Other 10 6 'Structure model' Advisory 11 6 'Structure model' 'Refinement description' 12 7 'Structure model' Advisory 13 7 'Structure model' 'Database references' 14 7 'Structure model' 'Derived calculations' 15 8 'Structure model' 'Data collection' 16 8 'Structure model' 'Refinement description' 17 9 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 6 'Structure model' software 3 7 'Structure model' database_2 4 7 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 7 'Structure model' struct_conn 6 7 'Structure model' struct_ref_seq_dif 7 7 'Structure model' struct_site 8 8 'Structure model' chem_comp_atom 9 8 'Structure model' chem_comp_bond 10 8 'Structure model' pdbx_initial_refinement_model 11 8 'Structure model' struct_ncs_dom_lim 12 9 'Structure model' pdbx_entry_details 13 9 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.name' 2 7 'Structure model' '_database_2.pdbx_DOI' 3 7 'Structure model' '_database_2.pdbx_database_accession' 4 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 7 'Structure model' '_struct_ref_seq_dif.details' 6 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 7 'Structure model' '_struct_site.pdbx_auth_seq_id' 9 8 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 10 8 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 11 9 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.entry_id 2P3C _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-03-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2P3A 'Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor' unspecified PDB 2P3B 'Crystal Structure of the subtype B wild type HIV protease complexed with TL-3 inhibitor' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sanches, M.' 1 'Krauchenco, S.' 2 'Martins, N.H.' 3 'Gustchina, A.' 4 'Wlodawer, A.' 5 'Polikarpov, I.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structural Characterization of B and non-B Subtypes of HIV-Protease: Insights into the Natural Susceptibility to Drug Resistance Development. ; J.Mol.Biol. 369 1029 1040 2007 JMOBAK UK 0022-2836 0070 ? 17467738 10.1016/j.jmb.2007.03.049 1 'Crystallization of A non-B and a B mutant HIV protease' 'Acta Crystallogr.,Sect.D' D60 1625 1627 2004 ABCRE6 DK 0907-4449 0766 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sanches, M.' 1 ? primary 'Krauchenco, S.' 2 ? primary 'Martins, N.H.' 3 ? primary 'Gustchina, A.' 4 ? primary 'Wlodawer, A.' 5 ? primary 'Polikarpov, I.' 6 ? 1 'Sanches, M.' 7 ? 1 'Martins, N.H.' 8 ? 1 'Calazans, A.' 9 ? 1 'Brindeiro, R.M.' 10 ? 1 'Tanuri, A.' 11 ? 1 'Antunes, O.A.C.' 12 ? 1 'Polikarpov, I.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man protease 10740.737 2 3.4.23.16 Q7K ? ? 2 non-polymer syn ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 909.077 1 ? ? ? ? 3 non-polymer syn 'ACETIC ACID' 60.052 3 ? ? ? ? 4 water nat water 18.015 117 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKVGGQLKEALLDTGADDTVLEDIALPGKWKPKMIGGIGGFIKVKQYENVSLEI(CME)GHKAIGTVL VGPTPVNIIGRNMLTQIGCTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKVGGQLKEALLDTGADDTVLEDIALPGKWKPKMIGGIGGFIKVKQYENVSLEICGHKAIGTVLVGPT PVNIIGRNMLTQIGCTLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 3TL 3 'ACETIC ACID' ACY 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 VAL n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 ASP n 1 36 ILE n 1 37 ALA n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 LYS n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 LYS n 1 58 GLN n 1 59 TYR n 1 60 GLU n 1 61 ASN n 1 62 VAL n 1 63 SER n 1 64 LEU n 1 65 GLU n 1 66 ILE n 1 67 CME n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 MET n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3TL peptide-like . ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 'TL-3, C2 symmetric inhibitor' 'C50 H64 N6 O10' 909.077 ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CME 'L-peptide linking' n 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' ? 'C5 H11 N O3 S2' 197.276 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CME 67 67 67 CME CME A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 ILE 36 36 36 ILE ILE B . n B 1 37 ALA 37 37 37 ALA ALA B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 ASN 61 61 61 ASN ASN B . n B 1 62 VAL 62 62 62 VAL VAL B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 CME 67 67 67 CME CME B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 MET 89 89 89 MET MET B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3TL 1 201 201 3TL 3TL A . D 3 ACY 1 302 302 ACY ACY A . E 3 ACY 1 301 301 ACY ACY B . F 3 ACY 1 303 303 ACY ACY B . G 4 HOH 1 303 1 HOH HOH A . G 4 HOH 2 304 4 HOH HOH A . G 4 HOH 3 305 6 HOH HOH A . G 4 HOH 4 306 8 HOH HOH A . G 4 HOH 5 307 10 HOH HOH A . G 4 HOH 6 308 13 HOH HOH A . G 4 HOH 7 309 15 HOH HOH A . G 4 HOH 8 310 16 HOH HOH A . G 4 HOH 9 311 17 HOH HOH A . G 4 HOH 10 312 20 HOH HOH A . G 4 HOH 11 313 23 HOH HOH A . G 4 HOH 12 314 24 HOH HOH A . G 4 HOH 13 315 26 HOH HOH A . G 4 HOH 14 316 31 HOH HOH A . G 4 HOH 15 317 33 HOH HOH A . G 4 HOH 16 318 34 HOH HOH A . G 4 HOH 17 319 35 HOH HOH A . G 4 HOH 18 320 36 HOH HOH A . G 4 HOH 19 321 38 HOH HOH A . G 4 HOH 20 322 40 HOH HOH A . G 4 HOH 21 323 41 HOH HOH A . G 4 HOH 22 324 45 HOH HOH A . G 4 HOH 23 325 47 HOH HOH A . G 4 HOH 24 326 48 HOH HOH A . G 4 HOH 25 327 49 HOH HOH A . G 4 HOH 26 328 52 HOH HOH A . G 4 HOH 27 329 54 HOH HOH A . G 4 HOH 28 330 58 HOH HOH A . G 4 HOH 29 331 62 HOH HOH A . G 4 HOH 30 332 63 HOH HOH A . G 4 HOH 31 333 64 HOH HOH A . G 4 HOH 32 334 66 HOH HOH A . G 4 HOH 33 335 69 HOH HOH A . G 4 HOH 34 336 70 HOH HOH A . G 4 HOH 35 337 74 HOH HOH A . G 4 HOH 36 338 78 HOH HOH A . G 4 HOH 37 339 79 HOH HOH A . G 4 HOH 38 340 80 HOH HOH A . G 4 HOH 39 341 83 HOH HOH A . G 4 HOH 40 342 84 HOH HOH A . G 4 HOH 41 343 92 HOH HOH A . G 4 HOH 42 344 93 HOH HOH A . G 4 HOH 43 345 94 HOH HOH A . G 4 HOH 44 346 96 HOH HOH A . G 4 HOH 45 347 98 HOH HOH A . G 4 HOH 46 348 99 HOH HOH A . G 4 HOH 47 349 100 HOH HOH A . G 4 HOH 48 350 103 HOH HOH A . G 4 HOH 49 351 104 HOH HOH A . G 4 HOH 50 352 105 HOH HOH A . G 4 HOH 51 353 106 HOH HOH A . G 4 HOH 52 354 107 HOH HOH A . G 4 HOH 53 355 111 HOH HOH A . G 4 HOH 54 356 113 HOH HOH A . G 4 HOH 55 357 117 HOH HOH A . H 4 HOH 1 304 2 HOH HOH B . H 4 HOH 2 305 3 HOH HOH B . H 4 HOH 3 306 5 HOH HOH B . H 4 HOH 4 307 7 HOH HOH B . H 4 HOH 5 308 9 HOH HOH B . H 4 HOH 6 309 11 HOH HOH B . H 4 HOH 7 310 12 HOH HOH B . H 4 HOH 8 311 14 HOH HOH B . H 4 HOH 9 312 18 HOH HOH B . H 4 HOH 10 313 19 HOH HOH B . H 4 HOH 11 314 21 HOH HOH B . H 4 HOH 12 315 22 HOH HOH B . H 4 HOH 13 316 25 HOH HOH B . H 4 HOH 14 317 27 HOH HOH B . H 4 HOH 15 318 28 HOH HOH B . H 4 HOH 16 319 29 HOH HOH B . H 4 HOH 17 320 30 HOH HOH B . H 4 HOH 18 321 32 HOH HOH B . H 4 HOH 19 322 37 HOH HOH B . H 4 HOH 20 323 39 HOH HOH B . H 4 HOH 21 324 42 HOH HOH B . H 4 HOH 22 325 43 HOH HOH B . H 4 HOH 23 326 44 HOH HOH B . H 4 HOH 24 327 46 HOH HOH B . H 4 HOH 25 328 50 HOH HOH B . H 4 HOH 26 329 51 HOH HOH B . H 4 HOH 27 330 53 HOH HOH B . H 4 HOH 28 331 55 HOH HOH B . H 4 HOH 29 332 56 HOH HOH B . H 4 HOH 30 333 57 HOH HOH B . H 4 HOH 31 334 59 HOH HOH B . H 4 HOH 32 335 60 HOH HOH B . H 4 HOH 33 336 61 HOH HOH B . H 4 HOH 34 337 65 HOH HOH B . H 4 HOH 35 338 67 HOH HOH B . H 4 HOH 36 339 68 HOH HOH B . H 4 HOH 37 340 71 HOH HOH B . H 4 HOH 38 341 72 HOH HOH B . H 4 HOH 39 342 73 HOH HOH B . H 4 HOH 40 343 75 HOH HOH B . H 4 HOH 41 344 76 HOH HOH B . H 4 HOH 42 345 77 HOH HOH B . H 4 HOH 43 346 81 HOH HOH B . H 4 HOH 44 347 82 HOH HOH B . H 4 HOH 45 348 85 HOH HOH B . H 4 HOH 46 349 86 HOH HOH B . H 4 HOH 47 350 87 HOH HOH B . H 4 HOH 48 351 88 HOH HOH B . H 4 HOH 49 352 89 HOH HOH B . H 4 HOH 50 353 90 HOH HOH B . H 4 HOH 51 354 91 HOH HOH B . H 4 HOH 52 355 95 HOH HOH B . H 4 HOH 53 356 97 HOH HOH B . H 4 HOH 54 357 101 HOH HOH B . H 4 HOH 55 358 102 HOH HOH B . H 4 HOH 56 359 108 HOH HOH B . H 4 HOH 57 360 109 HOH HOH B . H 4 HOH 58 361 110 HOH HOH B . H 4 HOH 59 362 112 HOH HOH B . H 4 HOH 60 363 114 HOH HOH B . H 4 HOH 61 364 115 HOH HOH B . H 4 HOH 62 365 116 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A CME 67 ? SD B A CME 67 SD 2 1 Y 0 A CME 67 ? CE B A CME 67 CE 3 1 Y 0 A CME 67 ? CZ B A CME 67 CZ 4 1 Y 0 A CME 67 ? OH B A CME 67 OH 5 1 Y 0 B CME 67 ? SD B B CME 67 SD 6 1 Y 0 B CME 67 ? CE B B CME 67 CE 7 1 Y 0 B CME 67 ? CZ B B CME 67 CZ 8 1 Y 0 B CME 67 ? OH B B CME 67 OH # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 1 REFMAC 5.2.0003 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MAR345 345DTB ? ? ? ? 'data collection' ? ? ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? 7 # _cell.entry_id 2P3C _cell.length_a 61.425 _cell.length_b 61.425 _cell.length_c 80.892 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P3C _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2P3C _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 39.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details ;0.8M ammonium sulfate, 0.1M sodium cacodylate. The crystals nucleated at 277K and were transfered to 291K for further growth. The protein to well proportion was 2:1, pH 6.2, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' 'SI 111 CHANNEL' 1 M x-ray 2 ? ? 1 M x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.43 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LNLS BEAMLINE D03B-MX1' _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_wavelength 1.43 _diffrn_source.pdbx_synchrotron_site LNLS _diffrn_source.pdbx_synchrotron_beamline D03B-MX1 # _reflns.entry_id 2P3C _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 53.225 _reflns.number_obs 10162 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_netI_over_sigmaI 10.800 _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_redundancy 2.500 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.10 2.21 ? 3638 ? 0.318 2.1 0.318 ? 2.40 ? 1491 99.80 1 1,2 2.21 2.35 ? 3398 ? 0.234 2.8 0.234 ? 2.40 ? 1389 99.80 2 1,2 2.35 2.51 ? 3199 ? 0.177 2.6 0.177 ? 2.40 ? 1307 100.00 3 1,2 2.51 2.71 ? 3018 ? 0.114 5.9 0.114 ? 2.40 ? 1234 100.00 4 1,2 2.71 2.97 ? 2784 ? 0.072 9.6 0.072 ? 2.50 ? 1131 100.00 5 1,2 2.97 3.32 ? 2543 ? 0.047 13.7 0.047 ? 2.50 ? 1028 100.00 6 1,2 3.32 3.83 ? 2270 ? 0.034 17.6 0.034 ? 2.50 ? 909 100.00 7 1,2 3.83 4.70 ? 1915 ? 0.026 20.1 0.026 ? 2.50 ? 762 99.70 8 1,2 4.70 6.64 ? 1516 ? 0.023 24.4 0.023 ? 2.50 ? 599 99.10 9 1,2 6.64 32.21 ? 800 ? 0.026 16.9 0.026 ? 2.60 ? 312 94.20 10 1,2 # _refine.entry_id 2P3C _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 25.270 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.670 _refine.ls_number_reflns_obs 10121 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.265 _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 1008 _refine.B_iso_mean 35.515 _refine.aniso_B[1][1] -0.010 _refine.aniso_B[2][2] -0.010 _refine.aniso_B[3][3] 0.020 _refine.aniso_B[1][2] -0.010 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.pdbx_overall_ESU_R_Free 0.262 _refine.overall_SU_ML 0.202 _refine.overall_SU_B 14.020 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1504 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 78 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 1699 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 25.270 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1806 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2450 1.593 2.063 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 220 7.070 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 54 44.814 25.185 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 309 18.909 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 25.096 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 277 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1328 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1042 0.231 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1196 0.322 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 156 0.201 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 79 0.243 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.131 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1092 1.546 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1741 2.749 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 792 2.391 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 709 3.333 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1729 1.689 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 1620 14.499 3.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 'TIGHT POSITIONAL' A 663 0.030 0.050 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? 1 'MEDIUM POSITIONAL' A 111 0.310 0.500 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? 1 'TIGHT THERMAL' A 663 0.170 0.500 1 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? 1 'MEDIUM THERMAL' A 111 0.500 2.000 1 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? # _refine_ls_shell.d_res_high 2.101 _refine_ls_shell.d_res_low 2.155 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.730 _refine_ls_shell.number_reflns_R_work 672 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 746 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 1 3 A 1 4 B 1 5 A 1 6 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A PRO 1 . A GLU 34 . A PRO 1 A GLU 34 1 ? 1 2 1 B PRO 1 . B GLU 34 . B PRO 1 B GLU 34 1 ? 1 3 2 A ASP 35 . A LEU 64 . A ASP 35 A LEU 64 2 ? 1 4 2 B ASP 35 . B LEU 64 . B ASP 35 B LEU 64 2 ? 1 5 3 A GLU 65 . A PHE 99 . A GLU 65 A PHE 99 1 ? 1 6 3 B GLU 65 . B PHE 99 . B GLU 65 B PHE 99 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2P3C _struct.title 'Crystal Structure of the subtype F wild type HIV protease complexed with TL-3 inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P3C _struct_keywords.text 'wild type subtype F HIV protease, TL-3 inhibitor, non-B HIV protease, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6Q004_9HIV1 _struct_ref.pdbx_db_accession Q6Q004 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVKQYENVSLEICGHKAIGTVLVGPT PVNIIGRNMLTQIGCTLNF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2P3C A 1 ? 99 ? Q6Q004 1 ? 99 ? 1 99 2 1 2P3C B 1 ? 99 ? Q6Q004 1 ? 99 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2P3C LYS A 7 ? UNP Q6Q004 GLN 7 'engineered mutation' 7 1 1 2P3C ALA A 37 ? UNP Q6Q004 ASN 37 variant 37 2 2 2P3C LYS B 7 ? UNP Q6Q004 GLN 7 'engineered mutation' 7 3 2 2P3C ALA B 37 ? UNP Q6Q004 ASN 37 variant 37 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4990 ? 1 MORE -27 ? 1 'SSA (A^2)' 9210 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? ILE A 93 ? GLY A 86 ILE A 93 1 ? 8 HELX_P HELX_P2 2 GLY B 86 ? ILE B 93 ? GLY B 86 ILE B 93 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 66 C ? ? ? 1_555 A CME 67 N A ? A ILE 66 A CME 67 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? A ILE 66 C ? ? ? 1_555 A CME 67 N B ? A ILE 66 A CME 67 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A CME 67 C A ? ? 1_555 A GLY 68 N ? ? A CME 67 A GLY 68 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A CME 67 C B ? ? 1_555 A GLY 68 N ? ? A CME 67 A GLY 68 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? B ILE 66 C ? ? ? 1_555 B CME 67 N A ? B ILE 66 B CME 67 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? B ILE 66 C ? ? ? 1_555 B CME 67 N B ? B ILE 66 B CME 67 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? B CME 67 C A ? ? 1_555 B GLY 68 N ? ? B CME 67 B GLY 68 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale8 covale both ? B CME 67 C B ? ? 1_555 B GLY 68 N ? ? B CME 67 B GLY 68 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CME A 67 A . . . . CME A 67 ? 1_555 . . . . . . . CYS 1 CME Beta-mercaptoethanol 'Named protein modification' 2 CME A 67 B . . . . CME A 67 ? 1_555 . . . . . . . CYS 1 CME Beta-mercaptoethanol 'Named protein modification' 3 CME B 67 A . . . . CME B 67 ? 1_555 . . . . . . . CYS 1 CME Beta-mercaptoethanol 'Named protein modification' 4 CME B 67 B . . . . CME B 67 ? 1_555 . . . . . . . CYS 1 CME Beta-mercaptoethanol 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? VAL A 15 ? LEU A 10 VAL A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? LEU B 33 ? VAL B 32 LEU B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? VAL B 15 ? LEU B 10 VAL B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O THR B 96 ? O THR B 96 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 45 ? N LYS A 45 O VAL A 56 ? O VAL A 56 B 2 3 N LYS A 57 ? N LYS A 57 O VAL A 77 ? O VAL A 77 B 3 4 O LEU A 76 ? O LEU A 76 N LEU A 33 ? N LEU A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O ALA A 22 ? O ALA A 22 N VAL A 11 ? N VAL A 11 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 45 ? N LYS B 45 O VAL B 56 ? O VAL B 56 C 2 3 N LYS B 57 ? N LYS B 57 O VAL B 77 ? O VAL B 77 C 3 4 O LEU B 76 ? O LEU B 76 N LEU B 33 ? N LEU B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O ALA B 22 ? O ALA B 22 N VAL B 11 ? N VAL B 11 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3TL 201 ? 42 'BINDING SITE FOR RESIDUE 3TL A 201' AC2 Software B ACY 301 ? 4 'BINDING SITE FOR RESIDUE ACY B 301' AC3 Software A ACY 302 ? 8 'BINDING SITE FOR RESIDUE ACY A 302' AC4 Software B ACY 303 ? 8 'BINDING SITE FOR RESIDUE ACY B 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 42 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 42 ASP A 25 ? ASP A 25 . ? 1_555 ? 3 AC1 42 GLY A 27 ? GLY A 27 . ? 1_555 ? 4 AC1 42 ALA A 28 ? ALA A 28 . ? 1_555 ? 5 AC1 42 ASP A 29 ? ASP A 29 . ? 1_555 ? 6 AC1 42 ASP A 30 ? ASP A 30 . ? 1_555 ? 7 AC1 42 VAL A 32 ? VAL A 32 . ? 1_555 ? 8 AC1 42 LYS A 45 ? LYS A 45 . ? 1_555 ? 9 AC1 42 MET A 46 ? MET A 46 . ? 1_555 ? 10 AC1 42 ILE A 47 ? ILE A 47 . ? 1_555 ? 11 AC1 42 GLY A 48 ? GLY A 48 . ? 1_555 ? 12 AC1 42 GLY A 48 ? GLY A 48 . ? 6_555 ? 13 AC1 42 GLY A 49 ? GLY A 49 . ? 1_555 ? 14 AC1 42 ILE A 50 ? ILE A 50 . ? 1_555 ? 15 AC1 42 PHE A 53 ? PHE A 53 . ? 6_555 ? 16 AC1 42 PRO A 81 ? PRO A 81 . ? 1_555 ? 17 AC1 42 PRO A 81 ? PRO A 81 . ? 5_554 ? 18 AC1 42 VAL A 82 ? VAL A 82 . ? 1_555 ? 19 AC1 42 ILE A 84 ? ILE A 84 . ? 1_555 ? 20 AC1 42 HOH G . ? HOH A 303 . ? 1_555 ? 21 AC1 42 HOH G . ? HOH A 334 . ? 1_555 ? 22 AC1 42 HOH G . ? HOH A 344 . ? 1_555 ? 23 AC1 42 ARG B 8 ? ARG B 8 . ? 1_555 ? 24 AC1 42 ASP B 25 ? ASP B 25 . ? 1_555 ? 25 AC1 42 GLY B 27 ? GLY B 27 . ? 1_555 ? 26 AC1 42 ALA B 28 ? ALA B 28 . ? 1_555 ? 27 AC1 42 ASP B 29 ? ASP B 29 . ? 1_555 ? 28 AC1 42 ASP B 30 ? ASP B 30 . ? 1_555 ? 29 AC1 42 VAL B 32 ? VAL B 32 . ? 1_555 ? 30 AC1 42 LYS B 45 ? LYS B 45 . ? 1_555 ? 31 AC1 42 MET B 46 ? MET B 46 . ? 1_555 ? 32 AC1 42 ILE B 47 ? ILE B 47 . ? 1_555 ? 33 AC1 42 GLY B 48 ? GLY B 48 . ? 1_555 ? 34 AC1 42 GLY B 48 ? GLY B 48 . ? 5_554 ? 35 AC1 42 GLY B 49 ? GLY B 49 . ? 1_555 ? 36 AC1 42 ILE B 50 ? ILE B 50 . ? 1_555 ? 37 AC1 42 PHE B 53 ? PHE B 53 . ? 1_555 ? 38 AC1 42 PHE B 53 ? PHE B 53 . ? 5_554 ? 39 AC1 42 PRO B 81 ? PRO B 81 . ? 6_555 ? 40 AC1 42 PRO B 81 ? PRO B 81 . ? 1_555 ? 41 AC1 42 VAL B 82 ? VAL B 82 . ? 1_555 ? 42 AC1 42 ILE B 84 ? ILE B 84 . ? 1_555 ? 43 AC2 4 LYS B 14 ? LYS B 14 . ? 1_555 ? 44 AC2 4 GLY B 16 ? GLY B 16 . ? 1_555 ? 45 AC2 4 GLY B 17 ? GLY B 17 . ? 1_555 ? 46 AC2 4 HOH H . ? HOH B 327 . ? 1_555 ? 47 AC3 8 THR A 12 ? THR A 12 . ? 1_555 ? 48 AC3 8 LYS A 14 ? LYS A 14 . ? 1_555 ? 49 AC3 8 GLU A 65 ? GLU A 65 . ? 1_555 ? 50 AC3 8 CME A 67 ? CME A 67 . ? 1_555 ? 51 AC3 8 GLY A 68 ? GLY A 68 . ? 1_555 ? 52 AC3 8 THR B 12 ? THR B 12 . ? 5_544 ? 53 AC3 8 CME B 67 ? CME B 67 . ? 5_544 ? 54 AC3 8 ACY F . ? ACY B 303 . ? 5_544 ? 55 AC4 8 THR A 12 ? THR A 12 . ? 6_455 ? 56 AC4 8 CME A 67 ? CME A 67 . ? 6_455 ? 57 AC4 8 ACY D . ? ACY A 302 . ? 6_455 ? 58 AC4 8 THR B 12 ? THR B 12 . ? 1_555 ? 59 AC4 8 LYS B 14 ? LYS B 14 . ? 1_555 ? 60 AC4 8 GLU B 65 ? GLU B 65 . ? 1_555 ? 61 AC4 8 CME B 67 ? CME B 67 . ? 1_555 ? 62 AC4 8 GLY B 68 ? GLY B 68 . ? 1_555 ? # _pdbx_entry_details.nonpolymer_details 'THE INHIBITOR IS A C2 SYMMETRIC HIV PROTEASE' _pdbx_entry_details.entry_id 2P3C _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 315 ? ? O A HOH 355 ? ? 2.03 2 1 O A HOH 337 ? ? O A HOH 351 ? ? 2.09 3 1 O B HOH 316 ? ? O B HOH 360 ? ? 2.11 4 1 O A HOH 337 ? ? O A HOH 356 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 35 ? ? CG A ASP 35 ? ? OD2 A ASP 35 ? ? 123.98 118.30 5.68 0.90 N 2 1 CB B ASP 35 ? ? CG B ASP 35 ? ? OD2 B ASP 35 ? ? 124.74 118.30 6.44 0.90 N # _pdbx_molecule_features.prd_id PRD_000434 _pdbx_molecule_features.name 'N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000434 _pdbx_molecule.asym_id C # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CME 67 A CME 67 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' 2 B CME 67 B CME 67 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3TL C31 C N N 1 3TL O8 O N N 2 3TL O9 O N N 3 3TL CA C N N 4 3TL C C Y N 5 3TL C13 C Y N 6 3TL C14 C Y N 7 3TL C15 C Y N 8 3TL C16 C Y N 9 3TL C17 C Y N 10 3TL N4 N N N 11 3TL C18 C N S 12 3TL C19 C N N 13 3TL O4 O N N 14 3TL C20 C N N 15 3TL N2 N N N 16 3TL C10 C N S 17 3TL C11 C N N 18 3TL O2 O N N 19 3TL C12 C N N 20 3TL CG2 C N N 21 3TL CG1 C N N 22 3TL C2 C N R 23 3TL O1 O N N 24 3TL C1 C N S 25 3TL N1 N N N 26 3TL C3 C N N 27 3TL C4 C Y N 28 3TL C5 C Y N 29 3TL C9 C Y N 30 3TL C6 C Y N 31 3TL C8 C Y N 32 3TL C7 C Y N 33 3TL N51 N N N 34 3TL C51 C N S 35 3TL C52 C N R 36 3TL O51 O N N 37 3TL C53 C N N 38 3TL C54 C Y N 39 3TL C55 C Y N 40 3TL C59 C Y N 41 3TL C56 C Y N 42 3TL C58 C Y N 43 3TL C57 C Y N 44 3TL N52 N N N 45 3TL C60 C N S 46 3TL C61 C N N 47 3TL O52 O N N 48 3TL C62 C N N 49 3TL CG6 C N N 50 3TL CG5 C N N 51 3TL N54 N N N 52 3TL C68 C N S 53 3TL C69 C N N 54 3TL O54 O N N 55 3TL C70 C N N 56 3TL C81 C N N 57 3TL O58 O N N 58 3TL O59 O N N 59 3TL CA5 C N N 60 3TL C50 C Y N 61 3TL C63 C Y N 62 3TL C64 C Y N 63 3TL C65 C Y N 64 3TL C66 C Y N 65 3TL C67 C Y N 66 3TL HA1 H N N 67 3TL HA2 H N N 68 3TL H13 H N N 69 3TL H14 H N N 70 3TL H15 H N N 71 3TL H16 H N N 72 3TL H17 H N N 73 3TL HN4 H N N 74 3TL H18 H N N 75 3TL H201 H N N 76 3TL H202 H N N 77 3TL H203 H N N 78 3TL HN2 H N N 79 3TL H10 H N N 80 3TL H12 H N N 81 3TL HG21 H N N 82 3TL HG22 H N N 83 3TL HG23 H N N 84 3TL HG11 H N N 85 3TL HG12 H N N 86 3TL HG13 H N N 87 3TL H2 H N N 88 3TL HO1 H N N 89 3TL H1 H N N 90 3TL HN1 H N N 91 3TL H31 H N N 92 3TL H32 H N N 93 3TL H5 H N N 94 3TL H9 H N N 95 3TL H6 H N N 96 3TL H8 H N N 97 3TL H7 H N N 98 3TL HN51 H N N 99 3TL H51 H N N 100 3TL H52 H N N 101 3TL HO51 H N N 102 3TL H531 H N N 103 3TL H532 H N N 104 3TL H55 H N N 105 3TL H59 H N N 106 3TL H56 H N N 107 3TL H58 H N N 108 3TL H57 H N N 109 3TL HN52 H N N 110 3TL H60 H N N 111 3TL H62 H N N 112 3TL HG61 H N N 113 3TL HG62 H N N 114 3TL HG63 H N N 115 3TL HG51 H N N 116 3TL HG52 H N N 117 3TL HG53 H N N 118 3TL HN54 H N N 119 3TL H68 H N N 120 3TL H701 H N N 121 3TL H702 H N N 122 3TL H703 H N N 123 3TL HA51 H N N 124 3TL HA52 H N N 125 3TL H63 H N N 126 3TL H64 H N N 127 3TL H65 H N N 128 3TL H66 H N N 129 3TL H67 H N N 130 ACY C C N N 131 ACY O O N N 132 ACY OXT O N N 133 ACY CH3 C N N 134 ACY HXT H N N 135 ACY H1 H N N 136 ACY H2 H N N 137 ACY H3 H N N 138 ALA N N N N 139 ALA CA C N S 140 ALA C C N N 141 ALA O O N N 142 ALA CB C N N 143 ALA OXT O N N 144 ALA H H N N 145 ALA H2 H N N 146 ALA HA H N N 147 ALA HB1 H N N 148 ALA HB2 H N N 149 ALA HB3 H N N 150 ALA HXT H N N 151 ARG N N N N 152 ARG CA C N S 153 ARG C C N N 154 ARG O O N N 155 ARG CB C N N 156 ARG CG C N N 157 ARG CD C N N 158 ARG NE N N N 159 ARG CZ C N N 160 ARG NH1 N N N 161 ARG NH2 N N N 162 ARG OXT O N N 163 ARG H H N N 164 ARG H2 H N N 165 ARG HA H N N 166 ARG HB2 H N N 167 ARG HB3 H N N 168 ARG HG2 H N N 169 ARG HG3 H N N 170 ARG HD2 H N N 171 ARG HD3 H N N 172 ARG HE H N N 173 ARG HH11 H N N 174 ARG HH12 H N N 175 ARG HH21 H N N 176 ARG HH22 H N N 177 ARG HXT H N N 178 ASN N N N N 179 ASN CA C N S 180 ASN C C N N 181 ASN O O N N 182 ASN CB C N N 183 ASN CG C N N 184 ASN OD1 O N N 185 ASN ND2 N N N 186 ASN OXT O N N 187 ASN H H N N 188 ASN H2 H N N 189 ASN HA H N N 190 ASN HB2 H N N 191 ASN HB3 H N N 192 ASN HD21 H N N 193 ASN HD22 H N N 194 ASN HXT H N N 195 ASP N N N N 196 ASP CA C N S 197 ASP C C N N 198 ASP O O N N 199 ASP CB C N N 200 ASP CG C N N 201 ASP OD1 O N N 202 ASP OD2 O N N 203 ASP OXT O N N 204 ASP H H N N 205 ASP H2 H N N 206 ASP HA H N N 207 ASP HB2 H N N 208 ASP HB3 H N N 209 ASP HD2 H N N 210 ASP HXT H N N 211 CME N N N N 212 CME CA C N R 213 CME CB C N N 214 CME SG S N N 215 CME SD S N N 216 CME CE C N N 217 CME CZ C N N 218 CME OH O N N 219 CME C C N N 220 CME O O N N 221 CME OXT O N N 222 CME H H N N 223 CME H2 H N N 224 CME HA H N N 225 CME HB2 H N N 226 CME HB3 H N N 227 CME HE2 H N N 228 CME HE3 H N N 229 CME HZ2 H N N 230 CME HZ3 H N N 231 CME HH H N N 232 CME HXT H N N 233 CYS N N N N 234 CYS CA C N R 235 CYS C C N N 236 CYS O O N N 237 CYS CB C N N 238 CYS SG S N N 239 CYS OXT O N N 240 CYS H H N N 241 CYS H2 H N N 242 CYS HA H N N 243 CYS HB2 H N N 244 CYS HB3 H N N 245 CYS HG H N N 246 CYS HXT H N N 247 GLN N N N N 248 GLN CA C N S 249 GLN C C N N 250 GLN O O N N 251 GLN CB C N N 252 GLN CG C N N 253 GLN CD C N N 254 GLN OE1 O N N 255 GLN NE2 N N N 256 GLN OXT O N N 257 GLN H H N N 258 GLN H2 H N N 259 GLN HA H N N 260 GLN HB2 H N N 261 GLN HB3 H N N 262 GLN HG2 H N N 263 GLN HG3 H N N 264 GLN HE21 H N N 265 GLN HE22 H N N 266 GLN HXT H N N 267 GLU N N N N 268 GLU CA C N S 269 GLU C C N N 270 GLU O O N N 271 GLU CB C N N 272 GLU CG C N N 273 GLU CD C N N 274 GLU OE1 O N N 275 GLU OE2 O N N 276 GLU OXT O N N 277 GLU H H N N 278 GLU H2 H N N 279 GLU HA H N N 280 GLU HB2 H N N 281 GLU HB3 H N N 282 GLU HG2 H N N 283 GLU HG3 H N N 284 GLU HE2 H N N 285 GLU HXT H N N 286 GLY N N N N 287 GLY CA C N N 288 GLY C C N N 289 GLY O O N N 290 GLY OXT O N N 291 GLY H H N N 292 GLY H2 H N N 293 GLY HA2 H N N 294 GLY HA3 H N N 295 GLY HXT H N N 296 HIS N N N N 297 HIS CA C N S 298 HIS C C N N 299 HIS O O N N 300 HIS CB C N N 301 HIS CG C Y N 302 HIS ND1 N Y N 303 HIS CD2 C Y N 304 HIS CE1 C Y N 305 HIS NE2 N Y N 306 HIS OXT O N N 307 HIS H H N N 308 HIS H2 H N N 309 HIS HA H N N 310 HIS HB2 H N N 311 HIS HB3 H N N 312 HIS HD1 H N N 313 HIS HD2 H N N 314 HIS HE1 H N N 315 HIS HE2 H N N 316 HIS HXT H N N 317 HOH O O N N 318 HOH H1 H N N 319 HOH H2 H N N 320 ILE N N N N 321 ILE CA C N S 322 ILE C C N N 323 ILE O O N N 324 ILE CB C N S 325 ILE CG1 C N N 326 ILE CG2 C N N 327 ILE CD1 C N N 328 ILE OXT O N N 329 ILE H H N N 330 ILE H2 H N N 331 ILE HA H N N 332 ILE HB H N N 333 ILE HG12 H N N 334 ILE HG13 H N N 335 ILE HG21 H N N 336 ILE HG22 H N N 337 ILE HG23 H N N 338 ILE HD11 H N N 339 ILE HD12 H N N 340 ILE HD13 H N N 341 ILE HXT H N N 342 LEU N N N N 343 LEU CA C N S 344 LEU C C N N 345 LEU O O N N 346 LEU CB C N N 347 LEU CG C N N 348 LEU CD1 C N N 349 LEU CD2 C N N 350 LEU OXT O N N 351 LEU H H N N 352 LEU H2 H N N 353 LEU HA H N N 354 LEU HB2 H N N 355 LEU HB3 H N N 356 LEU HG H N N 357 LEU HD11 H N N 358 LEU HD12 H N N 359 LEU HD13 H N N 360 LEU HD21 H N N 361 LEU HD22 H N N 362 LEU HD23 H N N 363 LEU HXT H N N 364 LYS N N N N 365 LYS CA C N S 366 LYS C C N N 367 LYS O O N N 368 LYS CB C N N 369 LYS CG C N N 370 LYS CD C N N 371 LYS CE C N N 372 LYS NZ N N N 373 LYS OXT O N N 374 LYS H H N N 375 LYS H2 H N N 376 LYS HA H N N 377 LYS HB2 H N N 378 LYS HB3 H N N 379 LYS HG2 H N N 380 LYS HG3 H N N 381 LYS HD2 H N N 382 LYS HD3 H N N 383 LYS HE2 H N N 384 LYS HE3 H N N 385 LYS HZ1 H N N 386 LYS HZ2 H N N 387 LYS HZ3 H N N 388 LYS HXT H N N 389 MET N N N N 390 MET CA C N S 391 MET C C N N 392 MET O O N N 393 MET CB C N N 394 MET CG C N N 395 MET SD S N N 396 MET CE C N N 397 MET OXT O N N 398 MET H H N N 399 MET H2 H N N 400 MET HA H N N 401 MET HB2 H N N 402 MET HB3 H N N 403 MET HG2 H N N 404 MET HG3 H N N 405 MET HE1 H N N 406 MET HE2 H N N 407 MET HE3 H N N 408 MET HXT H N N 409 PHE N N N N 410 PHE CA C N S 411 PHE C C N N 412 PHE O O N N 413 PHE CB C N N 414 PHE CG C Y N 415 PHE CD1 C Y N 416 PHE CD2 C Y N 417 PHE CE1 C Y N 418 PHE CE2 C Y N 419 PHE CZ C Y N 420 PHE OXT O N N 421 PHE H H N N 422 PHE H2 H N N 423 PHE HA H N N 424 PHE HB2 H N N 425 PHE HB3 H N N 426 PHE HD1 H N N 427 PHE HD2 H N N 428 PHE HE1 H N N 429 PHE HE2 H N N 430 PHE HZ H N N 431 PHE HXT H N N 432 PRO N N N N 433 PRO CA C N S 434 PRO C C N N 435 PRO O O N N 436 PRO CB C N N 437 PRO CG C N N 438 PRO CD C N N 439 PRO OXT O N N 440 PRO H H N N 441 PRO HA H N N 442 PRO HB2 H N N 443 PRO HB3 H N N 444 PRO HG2 H N N 445 PRO HG3 H N N 446 PRO HD2 H N N 447 PRO HD3 H N N 448 PRO HXT H N N 449 SER N N N N 450 SER CA C N S 451 SER C C N N 452 SER O O N N 453 SER CB C N N 454 SER OG O N N 455 SER OXT O N N 456 SER H H N N 457 SER H2 H N N 458 SER HA H N N 459 SER HB2 H N N 460 SER HB3 H N N 461 SER HG H N N 462 SER HXT H N N 463 THR N N N N 464 THR CA C N S 465 THR C C N N 466 THR O O N N 467 THR CB C N R 468 THR OG1 O N N 469 THR CG2 C N N 470 THR OXT O N N 471 THR H H N N 472 THR H2 H N N 473 THR HA H N N 474 THR HB H N N 475 THR HG1 H N N 476 THR HG21 H N N 477 THR HG22 H N N 478 THR HG23 H N N 479 THR HXT H N N 480 TRP N N N N 481 TRP CA C N S 482 TRP C C N N 483 TRP O O N N 484 TRP CB C N N 485 TRP CG C Y N 486 TRP CD1 C Y N 487 TRP CD2 C Y N 488 TRP NE1 N Y N 489 TRP CE2 C Y N 490 TRP CE3 C Y N 491 TRP CZ2 C Y N 492 TRP CZ3 C Y N 493 TRP CH2 C Y N 494 TRP OXT O N N 495 TRP H H N N 496 TRP H2 H N N 497 TRP HA H N N 498 TRP HB2 H N N 499 TRP HB3 H N N 500 TRP HD1 H N N 501 TRP HE1 H N N 502 TRP HE3 H N N 503 TRP HZ2 H N N 504 TRP HZ3 H N N 505 TRP HH2 H N N 506 TRP HXT H N N 507 TYR N N N N 508 TYR CA C N S 509 TYR C C N N 510 TYR O O N N 511 TYR CB C N N 512 TYR CG C Y N 513 TYR CD1 C Y N 514 TYR CD2 C Y N 515 TYR CE1 C Y N 516 TYR CE2 C Y N 517 TYR CZ C Y N 518 TYR OH O N N 519 TYR OXT O N N 520 TYR H H N N 521 TYR H2 H N N 522 TYR HA H N N 523 TYR HB2 H N N 524 TYR HB3 H N N 525 TYR HD1 H N N 526 TYR HD2 H N N 527 TYR HE1 H N N 528 TYR HE2 H N N 529 TYR HH H N N 530 TYR HXT H N N 531 VAL N N N N 532 VAL CA C N S 533 VAL C C N N 534 VAL O O N N 535 VAL CB C N N 536 VAL CG1 C N N 537 VAL CG2 C N N 538 VAL OXT O N N 539 VAL H H N N 540 VAL H2 H N N 541 VAL HA H N N 542 VAL HB H N N 543 VAL HG11 H N N 544 VAL HG12 H N N 545 VAL HG13 H N N 546 VAL HG21 H N N 547 VAL HG22 H N N 548 VAL HG23 H N N 549 VAL HXT H N N 550 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3TL C31 O8 doub N N 1 3TL C31 O9 sing N N 2 3TL C31 N4 sing N N 3 3TL O9 CA sing N N 4 3TL CA C sing N N 5 3TL CA HA1 sing N N 6 3TL CA HA2 sing N N 7 3TL C C13 doub Y N 8 3TL C C17 sing Y N 9 3TL C13 C14 sing Y N 10 3TL C13 H13 sing N N 11 3TL C14 C15 doub Y N 12 3TL C14 H14 sing N N 13 3TL C15 C16 sing Y N 14 3TL C15 H15 sing N N 15 3TL C16 C17 doub Y N 16 3TL C16 H16 sing N N 17 3TL C17 H17 sing N N 18 3TL N4 C18 sing N N 19 3TL N4 HN4 sing N N 20 3TL C18 C19 sing N N 21 3TL C18 C20 sing N N 22 3TL C18 H18 sing N N 23 3TL C19 O4 doub N N 24 3TL C19 N2 sing N N 25 3TL C20 H201 sing N N 26 3TL C20 H202 sing N N 27 3TL C20 H203 sing N N 28 3TL N2 C10 sing N N 29 3TL N2 HN2 sing N N 30 3TL C10 C11 sing N N 31 3TL C10 C12 sing N N 32 3TL C10 H10 sing N N 33 3TL C11 O2 doub N N 34 3TL C11 N1 sing N N 35 3TL C12 CG2 sing N N 36 3TL C12 CG1 sing N N 37 3TL C12 H12 sing N N 38 3TL CG2 HG21 sing N N 39 3TL CG2 HG22 sing N N 40 3TL CG2 HG23 sing N N 41 3TL CG1 HG11 sing N N 42 3TL CG1 HG12 sing N N 43 3TL CG1 HG13 sing N N 44 3TL C2 O1 sing N N 45 3TL C2 C1 sing N N 46 3TL C2 H2 sing N N 47 3TL C2 C52 sing N N 48 3TL O1 HO1 sing N N 49 3TL C1 N1 sing N N 50 3TL C1 C3 sing N N 51 3TL C1 H1 sing N N 52 3TL N1 HN1 sing N N 53 3TL C3 C4 sing N N 54 3TL C3 H31 sing N N 55 3TL C3 H32 sing N N 56 3TL C4 C5 doub Y N 57 3TL C4 C9 sing Y N 58 3TL C5 C6 sing Y N 59 3TL C5 H5 sing N N 60 3TL C9 C8 doub Y N 61 3TL C9 H9 sing N N 62 3TL C6 C7 doub Y N 63 3TL C6 H6 sing N N 64 3TL C8 C7 sing Y N 65 3TL C8 H8 sing N N 66 3TL C7 H7 sing N N 67 3TL N51 C51 sing N N 68 3TL N51 HN51 sing N N 69 3TL N51 C61 sing N N 70 3TL C51 C52 sing N N 71 3TL C51 C53 sing N N 72 3TL C51 H51 sing N N 73 3TL C52 O51 sing N N 74 3TL C52 H52 sing N N 75 3TL O51 HO51 sing N N 76 3TL C53 C54 sing N N 77 3TL C53 H531 sing N N 78 3TL C53 H532 sing N N 79 3TL C54 C55 doub Y N 80 3TL C54 C59 sing Y N 81 3TL C55 C56 sing Y N 82 3TL C55 H55 sing N N 83 3TL C59 C58 doub Y N 84 3TL C59 H59 sing N N 85 3TL C56 C57 doub Y N 86 3TL C56 H56 sing N N 87 3TL C58 C57 sing Y N 88 3TL C58 H58 sing N N 89 3TL C57 H57 sing N N 90 3TL N52 C60 sing N N 91 3TL N52 HN52 sing N N 92 3TL N52 C69 sing N N 93 3TL C60 C61 sing N N 94 3TL C60 C62 sing N N 95 3TL C60 H60 sing N N 96 3TL C61 O52 doub N N 97 3TL C62 CG6 sing N N 98 3TL C62 CG5 sing N N 99 3TL C62 H62 sing N N 100 3TL CG6 HG61 sing N N 101 3TL CG6 HG62 sing N N 102 3TL CG6 HG63 sing N N 103 3TL CG5 HG51 sing N N 104 3TL CG5 HG52 sing N N 105 3TL CG5 HG53 sing N N 106 3TL N54 C68 sing N N 107 3TL N54 HN54 sing N N 108 3TL N54 C81 sing N N 109 3TL C68 C69 sing N N 110 3TL C68 C70 sing N N 111 3TL C68 H68 sing N N 112 3TL C69 O54 doub N N 113 3TL C70 H701 sing N N 114 3TL C70 H702 sing N N 115 3TL C70 H703 sing N N 116 3TL C81 O58 doub N N 117 3TL C81 O59 sing N N 118 3TL O59 CA5 sing N N 119 3TL CA5 C50 sing N N 120 3TL CA5 HA51 sing N N 121 3TL CA5 HA52 sing N N 122 3TL C50 C63 doub Y N 123 3TL C50 C67 sing Y N 124 3TL C63 C64 sing Y N 125 3TL C63 H63 sing N N 126 3TL C64 C65 doub Y N 127 3TL C64 H64 sing N N 128 3TL C65 C66 sing Y N 129 3TL C65 H65 sing N N 130 3TL C66 C67 doub Y N 131 3TL C66 H66 sing N N 132 3TL C67 H67 sing N N 133 ACY C O doub N N 134 ACY C OXT sing N N 135 ACY C CH3 sing N N 136 ACY OXT HXT sing N N 137 ACY CH3 H1 sing N N 138 ACY CH3 H2 sing N N 139 ACY CH3 H3 sing N N 140 ALA N CA sing N N 141 ALA N H sing N N 142 ALA N H2 sing N N 143 ALA CA C sing N N 144 ALA CA CB sing N N 145 ALA CA HA sing N N 146 ALA C O doub N N 147 ALA C OXT sing N N 148 ALA CB HB1 sing N N 149 ALA CB HB2 sing N N 150 ALA CB HB3 sing N N 151 ALA OXT HXT sing N N 152 ARG N CA sing N N 153 ARG N H sing N N 154 ARG N H2 sing N N 155 ARG CA C sing N N 156 ARG CA CB sing N N 157 ARG CA HA sing N N 158 ARG C O doub N N 159 ARG C OXT sing N N 160 ARG CB CG sing N N 161 ARG CB HB2 sing N N 162 ARG CB HB3 sing N N 163 ARG CG CD sing N N 164 ARG CG HG2 sing N N 165 ARG CG HG3 sing N N 166 ARG CD NE sing N N 167 ARG CD HD2 sing N N 168 ARG CD HD3 sing N N 169 ARG NE CZ sing N N 170 ARG NE HE sing N N 171 ARG CZ NH1 sing N N 172 ARG CZ NH2 doub N N 173 ARG NH1 HH11 sing N N 174 ARG NH1 HH12 sing N N 175 ARG NH2 HH21 sing N N 176 ARG NH2 HH22 sing N N 177 ARG OXT HXT sing N N 178 ASN N CA sing N N 179 ASN N H sing N N 180 ASN N H2 sing N N 181 ASN CA C sing N N 182 ASN CA CB sing N N 183 ASN CA HA sing N N 184 ASN C O doub N N 185 ASN C OXT sing N N 186 ASN CB CG sing N N 187 ASN CB HB2 sing N N 188 ASN CB HB3 sing N N 189 ASN CG OD1 doub N N 190 ASN CG ND2 sing N N 191 ASN ND2 HD21 sing N N 192 ASN ND2 HD22 sing N N 193 ASN OXT HXT sing N N 194 ASP N CA sing N N 195 ASP N H sing N N 196 ASP N H2 sing N N 197 ASP CA C sing N N 198 ASP CA CB sing N N 199 ASP CA HA sing N N 200 ASP C O doub N N 201 ASP C OXT sing N N 202 ASP CB CG sing N N 203 ASP CB HB2 sing N N 204 ASP CB HB3 sing N N 205 ASP CG OD1 doub N N 206 ASP CG OD2 sing N N 207 ASP OD2 HD2 sing N N 208 ASP OXT HXT sing N N 209 CME N CA sing N N 210 CME N H sing N N 211 CME N H2 sing N N 212 CME CA CB sing N N 213 CME CA C sing N N 214 CME CA HA sing N N 215 CME CB SG sing N N 216 CME CB HB2 sing N N 217 CME CB HB3 sing N N 218 CME SG SD sing N N 219 CME SD CE sing N N 220 CME CE CZ sing N N 221 CME CE HE2 sing N N 222 CME CE HE3 sing N N 223 CME CZ OH sing N N 224 CME CZ HZ2 sing N N 225 CME CZ HZ3 sing N N 226 CME OH HH sing N N 227 CME C O doub N N 228 CME C OXT sing N N 229 CME OXT HXT sing N N 230 CYS N CA sing N N 231 CYS N H sing N N 232 CYS N H2 sing N N 233 CYS CA C sing N N 234 CYS CA CB sing N N 235 CYS CA HA sing N N 236 CYS C O doub N N 237 CYS C OXT sing N N 238 CYS CB SG sing N N 239 CYS CB HB2 sing N N 240 CYS CB HB3 sing N N 241 CYS SG HG sing N N 242 CYS OXT HXT sing N N 243 GLN N CA sing N N 244 GLN N H sing N N 245 GLN N H2 sing N N 246 GLN CA C sing N N 247 GLN CA CB sing N N 248 GLN CA HA sing N N 249 GLN C O doub N N 250 GLN C OXT sing N N 251 GLN CB CG sing N N 252 GLN CB HB2 sing N N 253 GLN CB HB3 sing N N 254 GLN CG CD sing N N 255 GLN CG HG2 sing N N 256 GLN CG HG3 sing N N 257 GLN CD OE1 doub N N 258 GLN CD NE2 sing N N 259 GLN NE2 HE21 sing N N 260 GLN NE2 HE22 sing N N 261 GLN OXT HXT sing N N 262 GLU N CA sing N N 263 GLU N H sing N N 264 GLU N H2 sing N N 265 GLU CA C sing N N 266 GLU CA CB sing N N 267 GLU CA HA sing N N 268 GLU C O doub N N 269 GLU C OXT sing N N 270 GLU CB CG sing N N 271 GLU CB HB2 sing N N 272 GLU CB HB3 sing N N 273 GLU CG CD sing N N 274 GLU CG HG2 sing N N 275 GLU CG HG3 sing N N 276 GLU CD OE1 doub N N 277 GLU CD OE2 sing N N 278 GLU OE2 HE2 sing N N 279 GLU OXT HXT sing N N 280 GLY N CA sing N N 281 GLY N H sing N N 282 GLY N H2 sing N N 283 GLY CA C sing N N 284 GLY CA HA2 sing N N 285 GLY CA HA3 sing N N 286 GLY C O doub N N 287 GLY C OXT sing N N 288 GLY OXT HXT sing N N 289 HIS N CA sing N N 290 HIS N H sing N N 291 HIS N H2 sing N N 292 HIS CA C sing N N 293 HIS CA CB sing N N 294 HIS CA HA sing N N 295 HIS C O doub N N 296 HIS C OXT sing N N 297 HIS CB CG sing N N 298 HIS CB HB2 sing N N 299 HIS CB HB3 sing N N 300 HIS CG ND1 sing Y N 301 HIS CG CD2 doub Y N 302 HIS ND1 CE1 doub Y N 303 HIS ND1 HD1 sing N N 304 HIS CD2 NE2 sing Y N 305 HIS CD2 HD2 sing N N 306 HIS CE1 NE2 sing Y N 307 HIS CE1 HE1 sing N N 308 HIS NE2 HE2 sing N N 309 HIS OXT HXT sing N N 310 HOH O H1 sing N N 311 HOH O H2 sing N N 312 ILE N CA sing N N 313 ILE N H sing N N 314 ILE N H2 sing N N 315 ILE CA C sing N N 316 ILE CA CB sing N N 317 ILE CA HA sing N N 318 ILE C O doub N N 319 ILE C OXT sing N N 320 ILE CB CG1 sing N N 321 ILE CB CG2 sing N N 322 ILE CB HB sing N N 323 ILE CG1 CD1 sing N N 324 ILE CG1 HG12 sing N N 325 ILE CG1 HG13 sing N N 326 ILE CG2 HG21 sing N N 327 ILE CG2 HG22 sing N N 328 ILE CG2 HG23 sing N N 329 ILE CD1 HD11 sing N N 330 ILE CD1 HD12 sing N N 331 ILE CD1 HD13 sing N N 332 ILE OXT HXT sing N N 333 LEU N CA sing N N 334 LEU N H sing N N 335 LEU N H2 sing N N 336 LEU CA C sing N N 337 LEU CA CB sing N N 338 LEU CA HA sing N N 339 LEU C O doub N N 340 LEU C OXT sing N N 341 LEU CB CG sing N N 342 LEU CB HB2 sing N N 343 LEU CB HB3 sing N N 344 LEU CG CD1 sing N N 345 LEU CG CD2 sing N N 346 LEU CG HG sing N N 347 LEU CD1 HD11 sing N N 348 LEU CD1 HD12 sing N N 349 LEU CD1 HD13 sing N N 350 LEU CD2 HD21 sing N N 351 LEU CD2 HD22 sing N N 352 LEU CD2 HD23 sing N N 353 LEU OXT HXT sing N N 354 LYS N CA sing N N 355 LYS N H sing N N 356 LYS N H2 sing N N 357 LYS CA C sing N N 358 LYS CA CB sing N N 359 LYS CA HA sing N N 360 LYS C O doub N N 361 LYS C OXT sing N N 362 LYS CB CG sing N N 363 LYS CB HB2 sing N N 364 LYS CB HB3 sing N N 365 LYS CG CD sing N N 366 LYS CG HG2 sing N N 367 LYS CG HG3 sing N N 368 LYS CD CE sing N N 369 LYS CD HD2 sing N N 370 LYS CD HD3 sing N N 371 LYS CE NZ sing N N 372 LYS CE HE2 sing N N 373 LYS CE HE3 sing N N 374 LYS NZ HZ1 sing N N 375 LYS NZ HZ2 sing N N 376 LYS NZ HZ3 sing N N 377 LYS OXT HXT sing N N 378 MET N CA sing N N 379 MET N H sing N N 380 MET N H2 sing N N 381 MET CA C sing N N 382 MET CA CB sing N N 383 MET CA HA sing N N 384 MET C O doub N N 385 MET C OXT sing N N 386 MET CB CG sing N N 387 MET CB HB2 sing N N 388 MET CB HB3 sing N N 389 MET CG SD sing N N 390 MET CG HG2 sing N N 391 MET CG HG3 sing N N 392 MET SD CE sing N N 393 MET CE HE1 sing N N 394 MET CE HE2 sing N N 395 MET CE HE3 sing N N 396 MET OXT HXT sing N N 397 PHE N CA sing N N 398 PHE N H sing N N 399 PHE N H2 sing N N 400 PHE CA C sing N N 401 PHE CA CB sing N N 402 PHE CA HA sing N N 403 PHE C O doub N N 404 PHE C OXT sing N N 405 PHE CB CG sing N N 406 PHE CB HB2 sing N N 407 PHE CB HB3 sing N N 408 PHE CG CD1 doub Y N 409 PHE CG CD2 sing Y N 410 PHE CD1 CE1 sing Y N 411 PHE CD1 HD1 sing N N 412 PHE CD2 CE2 doub Y N 413 PHE CD2 HD2 sing N N 414 PHE CE1 CZ doub Y N 415 PHE CE1 HE1 sing N N 416 PHE CE2 CZ sing Y N 417 PHE CE2 HE2 sing N N 418 PHE CZ HZ sing N N 419 PHE OXT HXT sing N N 420 PRO N CA sing N N 421 PRO N CD sing N N 422 PRO N H sing N N 423 PRO CA C sing N N 424 PRO CA CB sing N N 425 PRO CA HA sing N N 426 PRO C O doub N N 427 PRO C OXT sing N N 428 PRO CB CG sing N N 429 PRO CB HB2 sing N N 430 PRO CB HB3 sing N N 431 PRO CG CD sing N N 432 PRO CG HG2 sing N N 433 PRO CG HG3 sing N N 434 PRO CD HD2 sing N N 435 PRO CD HD3 sing N N 436 PRO OXT HXT sing N N 437 SER N CA sing N N 438 SER N H sing N N 439 SER N H2 sing N N 440 SER CA C sing N N 441 SER CA CB sing N N 442 SER CA HA sing N N 443 SER C O doub N N 444 SER C OXT sing N N 445 SER CB OG sing N N 446 SER CB HB2 sing N N 447 SER CB HB3 sing N N 448 SER OG HG sing N N 449 SER OXT HXT sing N N 450 THR N CA sing N N 451 THR N H sing N N 452 THR N H2 sing N N 453 THR CA C sing N N 454 THR CA CB sing N N 455 THR CA HA sing N N 456 THR C O doub N N 457 THR C OXT sing N N 458 THR CB OG1 sing N N 459 THR CB CG2 sing N N 460 THR CB HB sing N N 461 THR OG1 HG1 sing N N 462 THR CG2 HG21 sing N N 463 THR CG2 HG22 sing N N 464 THR CG2 HG23 sing N N 465 THR OXT HXT sing N N 466 TRP N CA sing N N 467 TRP N H sing N N 468 TRP N H2 sing N N 469 TRP CA C sing N N 470 TRP CA CB sing N N 471 TRP CA HA sing N N 472 TRP C O doub N N 473 TRP C OXT sing N N 474 TRP CB CG sing N N 475 TRP CB HB2 sing N N 476 TRP CB HB3 sing N N 477 TRP CG CD1 doub Y N 478 TRP CG CD2 sing Y N 479 TRP CD1 NE1 sing Y N 480 TRP CD1 HD1 sing N N 481 TRP CD2 CE2 doub Y N 482 TRP CD2 CE3 sing Y N 483 TRP NE1 CE2 sing Y N 484 TRP NE1 HE1 sing N N 485 TRP CE2 CZ2 sing Y N 486 TRP CE3 CZ3 doub Y N 487 TRP CE3 HE3 sing N N 488 TRP CZ2 CH2 doub Y N 489 TRP CZ2 HZ2 sing N N 490 TRP CZ3 CH2 sing Y N 491 TRP CZ3 HZ3 sing N N 492 TRP CH2 HH2 sing N N 493 TRP OXT HXT sing N N 494 TYR N CA sing N N 495 TYR N H sing N N 496 TYR N H2 sing N N 497 TYR CA C sing N N 498 TYR CA CB sing N N 499 TYR CA HA sing N N 500 TYR C O doub N N 501 TYR C OXT sing N N 502 TYR CB CG sing N N 503 TYR CB HB2 sing N N 504 TYR CB HB3 sing N N 505 TYR CG CD1 doub Y N 506 TYR CG CD2 sing Y N 507 TYR CD1 CE1 sing Y N 508 TYR CD1 HD1 sing N N 509 TYR CD2 CE2 doub Y N 510 TYR CD2 HD2 sing N N 511 TYR CE1 CZ doub Y N 512 TYR CE1 HE1 sing N N 513 TYR CE2 CZ sing Y N 514 TYR CE2 HE2 sing N N 515 TYR CZ OH sing N N 516 TYR OH HH sing N N 517 TYR OXT HXT sing N N 518 VAL N CA sing N N 519 VAL N H sing N N 520 VAL N H2 sing N N 521 VAL CA C sing N N 522 VAL CA CB sing N N 523 VAL CA HA sing N N 524 VAL C O doub N N 525 VAL C OXT sing N N 526 VAL CB CG1 sing N N 527 VAL CB CG2 sing N N 528 VAL CB HB sing N N 529 VAL CG1 HG11 sing N N 530 VAL CG1 HG12 sing N N 531 VAL CG1 HG13 sing N N 532 VAL CG2 HG21 sing N N 533 VAL CG2 HG22 sing N N 534 VAL CG2 HG23 sing N N 535 VAL OXT HXT sing N N 536 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor' # _atom_sites.entry_id 2P3C _atom_sites.fract_transf_matrix[1][1] 0.016280 _atom_sites.fract_transf_matrix[1][2] 0.009399 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018799 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012362 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_