data_2PFS # _entry.id 2PFS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PFS pdb_00002pfs 10.2210/pdb2pfs/pdb RCSB RCSB042328 ? ? WWPDB D_1000042328 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC6354 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PFS _pdbx_database_status.recvd_initial_deposition_date 2007-04-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chruszcz, M.' 1 ? 'Evdokimova, E.' 2 ? 'Cymborowski, M.' 3 ? 'Kagan, O.' 4 ? 'Savchenko, A.' 5 ? 'Edwards, A.' 6 ? 'Joachimiak, A.' 7 ? 'Minor, W.' 8 0000-0001-7075-7090 'Midwest Center for Structural Genomics (MCSG)' 9 ? # _citation.id primary _citation.title 'Structural and functional insight into the universal stress protein family.' _citation.journal_abbrev 'Evol Appl' _citation.journal_volume 6 _citation.page_first 434 _citation.page_last 449 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1752-4571 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23745136 _citation.pdbx_database_id_DOI 10.1111/eva.12057 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tkaczuk, K.L.' 1 ? primary 'Shumilin, I.A.' 2 ? primary 'Chruszcz, M.' 3 ? primary 'Evdokimova, E.' 4 ? primary 'Savchenko, A.' 5 ? primary 'Minor, W.' 6 0000-0001-7075-7090 # _cell.entry_id 2PFS _cell.length_a 76.000 _cell.length_b 76.000 _cell.length_c 42.987 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PFS _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Universal stress protein' 16756.553 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 water nat water 18.015 40 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Usp # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GH(MSE)SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIP(MSE)PDTPYGTAIPLDTETTYDA(MSE) LDVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRLR DD ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG NTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRLRDD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC6354 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MSE n 1 4 SER n 1 5 VAL n 1 6 TYR n 1 7 HIS n 1 8 HIS n 1 9 ILE n 1 10 LEU n 1 11 LEU n 1 12 ALA n 1 13 VAL n 1 14 ASP n 1 15 PHE n 1 16 SER n 1 17 SER n 1 18 GLU n 1 19 ASP n 1 20 SER n 1 21 GLN n 1 22 VAL n 1 23 VAL n 1 24 GLN n 1 25 LYS n 1 26 VAL n 1 27 ARG n 1 28 ASN n 1 29 LEU n 1 30 ALA n 1 31 SER n 1 32 GLN n 1 33 ILE n 1 34 GLY n 1 35 ALA n 1 36 ARG n 1 37 LEU n 1 38 SER n 1 39 LEU n 1 40 ILE n 1 41 HIS n 1 42 VAL n 1 43 LEU n 1 44 ASP n 1 45 ASN n 1 46 ILE n 1 47 PRO n 1 48 MSE n 1 49 PRO n 1 50 ASP n 1 51 THR n 1 52 PRO n 1 53 TYR n 1 54 GLY n 1 55 THR n 1 56 ALA n 1 57 ILE n 1 58 PRO n 1 59 LEU n 1 60 ASP n 1 61 THR n 1 62 GLU n 1 63 THR n 1 64 THR n 1 65 TYR n 1 66 ASP n 1 67 ALA n 1 68 MSE n 1 69 LEU n 1 70 ASP n 1 71 VAL n 1 72 GLU n 1 73 LYS n 1 74 GLN n 1 75 LYS n 1 76 LEU n 1 77 SER n 1 78 GLN n 1 79 ILE n 1 80 GLY n 1 81 ASN n 1 82 THR n 1 83 LEU n 1 84 GLY n 1 85 ILE n 1 86 ASP n 1 87 PRO n 1 88 ALA n 1 89 HIS n 1 90 ARG n 1 91 TRP n 1 92 LEU n 1 93 VAL n 1 94 TRP n 1 95 GLY n 1 96 GLU n 1 97 PRO n 1 98 ARG n 1 99 GLU n 1 100 GLU n 1 101 ILE n 1 102 ILE n 1 103 ARG n 1 104 ILE n 1 105 ALA n 1 106 GLU n 1 107 GLN n 1 108 GLU n 1 109 ASN n 1 110 VAL n 1 111 ASP n 1 112 LEU n 1 113 ILE n 1 114 VAL n 1 115 VAL n 1 116 GLY n 1 117 SER n 1 118 HIS n 1 119 GLY n 1 120 ARG n 1 121 HIS n 1 122 GLY n 1 123 LEU n 1 124 ALA n 1 125 LEU n 1 126 LEU n 1 127 LEU n 1 128 GLY n 1 129 SER n 1 130 THR n 1 131 ALA n 1 132 ASN n 1 133 SER n 1 134 VAL n 1 135 LEU n 1 136 HIS n 1 137 TYR n 1 138 ALA n 1 139 LYS n 1 140 CYS n 1 141 ASP n 1 142 VAL n 1 143 LEU n 1 144 ALA n 1 145 VAL n 1 146 ARG n 1 147 LEU n 1 148 ARG n 1 149 ASP n 1 150 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nitrosomonas _entity_src_gen.pdbx_gene_src_gene NE1028 _entity_src_gen.gene_src_species 'Nitrosomonas europaea' _entity_src_gen.gene_src_strain 'IFO 14298' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nitrosomonas europaea ATCC 19718' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 228410 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-Gold(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name p15TV-L _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q82VN8_NITEU _struct_ref.pdbx_db_accession Q82VN8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNT LGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRLRDD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PFS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q82VN8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 148 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PFS GLY A 1 ? UNP Q82VN8 ? ? 'cloning artifact' -1 1 1 2PFS HIS A 2 ? UNP Q82VN8 ? ? 'cloning artifact' 0 2 1 2PFS MSE A 3 ? UNP Q82VN8 MET 1 'modified residue' 1 3 1 2PFS MSE A 48 ? UNP Q82VN8 MET 46 'modified residue' 46 4 1 2PFS MSE A 68 ? UNP Q82VN8 MET 66 'modified residue' 66 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PFS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.2M Sodium chloride, 0.1M HEPES pH 7.5, 25% PEG3350, 2% Isopropanol, VAPOR DIFFUSION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-02-08 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 # _reflns.entry_id 2PFS _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.25 _reflns.d_resolution_low 50.0 _reflns.number_all 6882 _reflns.number_obs 6882 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 58.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.29 _reflns_shell.percent_possible_all 81.5 _reflns_shell.Rmerge_I_obs 0.486 _reflns_shell.pdbx_Rsym_value 0.486 _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 7.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 277 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PFS _refine.ls_number_reflns_obs 6538 _refine.ls_number_reflns_all 6538 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 97.57 _refine.ls_R_factor_obs 0.19758 _refine.ls_R_factor_all 0.19758 _refine.ls_R_factor_R_work 0.19471 _refine.ls_R_factor_R_free 0.25455 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 329 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 52.420 _refine.aniso_B[1][1] -1.80 _refine.aniso_B[2][2] -1.80 _refine.aniso_B[3][3] 2.70 _refine.aniso_B[1][2] -0.90 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.277 _refine.pdbx_overall_ESU_R_Free 0.228 _refine.overall_SU_ML 0.141 _refine.overall_SU_B 11.231 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 936 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 978 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.021 ? 957 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.563 1.953 ? 1308 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.463 5.000 ? 124 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.880 25.263 ? 38 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.601 15.000 ? 154 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.282 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 167 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 697 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.214 0.200 ? 397 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 669 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.136 0.200 ? 51 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.211 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.254 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.182 1.500 ? 647 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.740 2.000 ? 1006 'X-RAY DIFFRACTION' ? r_scbond_it 2.736 3.000 ? 352 'X-RAY DIFFRACTION' ? r_scangle_it 4.252 4.500 ? 302 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.250 _refine_ls_shell.d_res_low 2.309 _refine_ls_shell.number_reflns_R_work 407 _refine_ls_shell.R_factor_R_work 0.199 _refine_ls_shell.percent_reflns_obs 83.07 _refine_ls_shell.R_factor_R_free 0.229 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PFS _struct.title 'Crystal structure of universal stress protein from Nitrosomonas europaea' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PFS _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;stress protein, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 18 ? GLY A 34 ? GLU A 16 GLY A 32 1 ? 17 HELX_P HELX_P2 2 THR A 64 ? GLY A 84 ? THR A 62 GLY A 82 1 ? 21 HELX_P HELX_P3 3 ASP A 86 ? ALA A 88 ? ASP A 84 ALA A 86 5 ? 3 HELX_P HELX_P4 4 GLU A 96 ? GLU A 108 ? GLU A 94 GLU A 106 1 ? 13 HELX_P HELX_P5 5 SER A 129 ? ALA A 138 ? SER A 127 ALA A 136 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 3 C ? ? ? 1_555 A SER 4 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A ALA 67 C ? ? ? 1_555 A MSE 68 N ? ? A ALA 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale3 covale both ? A MSE 68 C ? ? ? 1_555 A LEU 69 N ? ? A MSE 66 A LEU 67 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 43 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 41 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASP _struct_mon_prot_cis.pdbx_label_seq_id_2 44 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASP _struct_mon_prot_cis.pdbx_auth_seq_id_2 42 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 22.48 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 90 ? TRP A 94 ? ARG A 88 TRP A 92 A 2 ARG A 36 ? LEU A 43 ? ARG A 34 LEU A 41 A 3 HIS A 8 ? ALA A 12 ? HIS A 6 ALA A 10 A 4 LEU A 112 ? SER A 117 ? LEU A 110 SER A 115 A 5 ASP A 141 ? ARG A 146 ? ASP A 139 ARG A 144 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 93 ? O VAL A 91 N LEU A 43 ? N LEU A 41 A 2 3 O ARG A 36 ? O ARG A 34 N ILE A 9 ? N ILE A 7 A 3 4 N LEU A 10 ? N LEU A 8 O LEU A 112 ? O LEU A 110 A 4 5 N VAL A 115 ? N VAL A 113 O VAL A 145 ? O VAL A 143 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 149 ? 2 'BINDING SITE FOR RESIDUE CL A 149' AC2 Software A CL 150 ? 1 'BINDING SITE FOR RESIDUE CL A 150' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 VAL A 13 ? VAL A 11 . ? 1_555 ? 2 AC1 2 VAL A 42 ? VAL A 40 . ? 1_555 ? 3 AC2 1 THR A 64 ? THR A 62 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PFS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PFS _atom_sites.fract_transf_matrix[1][1] 0.013158 _atom_sites.fract_transf_matrix[1][2] 0.007597 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015193 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023263 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 HIS 2 0 ? ? ? A . n A 1 3 MSE 3 1 1 MSE MSE A . n A 1 4 SER 4 2 2 SER SER A . n A 1 5 VAL 5 3 3 VAL VAL A . n A 1 6 TYR 6 4 4 TYR TYR A . n A 1 7 HIS 7 5 5 HIS HIS A . n A 1 8 HIS 8 6 6 HIS HIS A . n A 1 9 ILE 9 7 7 ILE ILE A . n A 1 10 LEU 10 8 8 LEU LEU A . n A 1 11 LEU 11 9 9 LEU LEU A . n A 1 12 ALA 12 10 10 ALA ALA A . n A 1 13 VAL 13 11 11 VAL VAL A . n A 1 14 ASP 14 12 12 ASP ASP A . n A 1 15 PHE 15 13 13 PHE PHE A . n A 1 16 SER 16 14 14 SER SER A . n A 1 17 SER 17 15 15 SER SER A . n A 1 18 GLU 18 16 16 GLU GLU A . n A 1 19 ASP 19 17 17 ASP ASP A . n A 1 20 SER 20 18 18 SER SER A . n A 1 21 GLN 21 19 19 GLN GLN A . n A 1 22 VAL 22 20 20 VAL VAL A . n A 1 23 VAL 23 21 21 VAL VAL A . n A 1 24 GLN 24 22 22 GLN GLN A . n A 1 25 LYS 25 23 23 LYS LYS A . n A 1 26 VAL 26 24 24 VAL VAL A . n A 1 27 ARG 27 25 25 ARG ARG A . n A 1 28 ASN 28 26 26 ASN ASN A . n A 1 29 LEU 29 27 27 LEU LEU A . n A 1 30 ALA 30 28 28 ALA ALA A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 GLN 32 30 30 GLN GLN A . n A 1 33 ILE 33 31 31 ILE ILE A . n A 1 34 GLY 34 32 32 GLY GLY A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 ARG 36 34 34 ARG ARG A . n A 1 37 LEU 37 35 35 LEU LEU A . n A 1 38 SER 38 36 36 SER SER A . n A 1 39 LEU 39 37 37 LEU LEU A . n A 1 40 ILE 40 38 38 ILE ILE A . n A 1 41 HIS 41 39 39 HIS HIS A . n A 1 42 VAL 42 40 40 VAL VAL A . n A 1 43 LEU 43 41 41 LEU LEU A . n A 1 44 ASP 44 42 42 ASP ASP A . n A 1 45 ASN 45 43 ? ? ? A . n A 1 46 ILE 46 44 ? ? ? A . n A 1 47 PRO 47 45 ? ? ? A . n A 1 48 MSE 48 46 ? ? ? A . n A 1 49 PRO 49 47 ? ? ? A . n A 1 50 ASP 50 48 ? ? ? A . n A 1 51 THR 51 49 ? ? ? A . n A 1 52 PRO 52 50 ? ? ? A . n A 1 53 TYR 53 51 ? ? ? A . n A 1 54 GLY 54 52 ? ? ? A . n A 1 55 THR 55 53 53 THR THR A . n A 1 56 ALA 56 54 54 ALA ALA A . n A 1 57 ILE 57 55 55 ILE ILE A . n A 1 58 PRO 58 56 56 PRO PRO A . n A 1 59 LEU 59 57 57 LEU LEU A . n A 1 60 ASP 60 58 58 ASP ASP A . n A 1 61 THR 61 59 59 THR THR A . n A 1 62 GLU 62 60 60 GLU GLU A . n A 1 63 THR 63 61 61 THR THR A . n A 1 64 THR 64 62 62 THR THR A . n A 1 65 TYR 65 63 63 TYR TYR A . n A 1 66 ASP 66 64 64 ASP ASP A . n A 1 67 ALA 67 65 65 ALA ALA A . n A 1 68 MSE 68 66 66 MSE MSE A . n A 1 69 LEU 69 67 67 LEU LEU A . n A 1 70 ASP 70 68 68 ASP ASP A . n A 1 71 VAL 71 69 69 VAL VAL A . n A 1 72 GLU 72 70 70 GLU GLU A . n A 1 73 LYS 73 71 71 LYS LYS A . n A 1 74 GLN 74 72 72 GLN GLN A . n A 1 75 LYS 75 73 73 LYS LYS A . n A 1 76 LEU 76 74 74 LEU LEU A . n A 1 77 SER 77 75 75 SER SER A . n A 1 78 GLN 78 76 76 GLN GLN A . n A 1 79 ILE 79 77 77 ILE ILE A . n A 1 80 GLY 80 78 78 GLY GLY A . n A 1 81 ASN 81 79 79 ASN ASN A . n A 1 82 THR 82 80 80 THR THR A . n A 1 83 LEU 83 81 81 LEU LEU A . n A 1 84 GLY 84 82 82 GLY GLY A . n A 1 85 ILE 85 83 83 ILE ILE A . n A 1 86 ASP 86 84 84 ASP ASP A . n A 1 87 PRO 87 85 85 PRO PRO A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 HIS 89 87 87 HIS HIS A . n A 1 90 ARG 90 88 88 ARG ARG A . n A 1 91 TRP 91 89 89 TRP TRP A . n A 1 92 LEU 92 90 90 LEU LEU A . n A 1 93 VAL 93 91 91 VAL VAL A . n A 1 94 TRP 94 92 92 TRP TRP A . n A 1 95 GLY 95 93 93 GLY GLY A . n A 1 96 GLU 96 94 94 GLU GLU A . n A 1 97 PRO 97 95 95 PRO PRO A . n A 1 98 ARG 98 96 96 ARG ARG A . n A 1 99 GLU 99 97 97 GLU GLU A . n A 1 100 GLU 100 98 98 GLU GLU A . n A 1 101 ILE 101 99 99 ILE ILE A . n A 1 102 ILE 102 100 100 ILE ILE A . n A 1 103 ARG 103 101 101 ARG ARG A . n A 1 104 ILE 104 102 102 ILE ILE A . n A 1 105 ALA 105 103 103 ALA ALA A . n A 1 106 GLU 106 104 104 GLU GLU A . n A 1 107 GLN 107 105 105 GLN GLN A . n A 1 108 GLU 108 106 106 GLU GLU A . n A 1 109 ASN 109 107 107 ASN ASN A . n A 1 110 VAL 110 108 108 VAL VAL A . n A 1 111 ASP 111 109 109 ASP ASP A . n A 1 112 LEU 112 110 110 LEU LEU A . n A 1 113 ILE 113 111 111 ILE ILE A . n A 1 114 VAL 114 112 112 VAL VAL A . n A 1 115 VAL 115 113 113 VAL VAL A . n A 1 116 GLY 116 114 114 GLY GLY A . n A 1 117 SER 117 115 115 SER SER A . n A 1 118 HIS 118 116 116 HIS HIS A . n A 1 119 GLY 119 117 ? ? ? A . n A 1 120 ARG 120 118 ? ? ? A . n A 1 121 HIS 121 119 ? ? ? A . n A 1 122 GLY 122 120 ? ? ? A . n A 1 123 LEU 123 121 ? ? ? A . n A 1 124 ALA 124 122 ? ? ? A . n A 1 125 LEU 125 123 ? ? ? A . n A 1 126 LEU 126 124 ? ? ? A . n A 1 127 LEU 127 125 ? ? ? A . n A 1 128 GLY 128 126 ? ? ? A . n A 1 129 SER 129 127 127 SER SER A . n A 1 130 THR 130 128 128 THR THR A . n A 1 131 ALA 131 129 129 ALA ALA A . n A 1 132 ASN 132 130 130 ASN ASN A . n A 1 133 SER 133 131 131 SER SER A . n A 1 134 VAL 134 132 132 VAL VAL A . n A 1 135 LEU 135 133 133 LEU LEU A . n A 1 136 HIS 136 134 134 HIS HIS A . n A 1 137 TYR 137 135 135 TYR TYR A . n A 1 138 ALA 138 136 136 ALA ALA A . n A 1 139 LYS 139 137 137 LYS LYS A . n A 1 140 CYS 140 138 138 CYS CYS A . n A 1 141 ASP 141 139 139 ASP ASP A . n A 1 142 VAL 142 140 140 VAL VAL A . n A 1 143 LEU 143 141 141 LEU LEU A . n A 1 144 ALA 144 142 142 ALA ALA A . n A 1 145 VAL 145 143 143 VAL VAL A . n A 1 146 ARG 146 144 144 ARG ARG A . n A 1 147 LEU 147 145 145 LEU LEU A . n A 1 148 ARG 148 146 ? ? ? A . n A 1 149 ASP 149 147 ? ? ? A . n A 1 150 ASP 150 148 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 149 1 CL CL A . C 2 CL 1 150 1 CL CL A . D 3 HOH 1 151 4 HOH HOH A . D 3 HOH 2 152 6 HOH HOH A . D 3 HOH 3 153 8 HOH HOH A . D 3 HOH 4 154 10 HOH HOH A . D 3 HOH 5 155 11 HOH HOH A . D 3 HOH 6 156 12 HOH HOH A . D 3 HOH 7 157 14 HOH HOH A . D 3 HOH 8 158 15 HOH HOH A . D 3 HOH 9 159 18 HOH HOH A . D 3 HOH 10 160 19 HOH HOH A . D 3 HOH 11 161 20 HOH HOH A . D 3 HOH 12 162 25 HOH HOH A . D 3 HOH 13 163 30 HOH HOH A . D 3 HOH 14 164 31 HOH HOH A . D 3 HOH 15 165 33 HOH HOH A . D 3 HOH 16 166 34 HOH HOH A . D 3 HOH 17 167 38 HOH HOH A . D 3 HOH 18 168 50 HOH HOH A . D 3 HOH 19 169 56 HOH HOH A . D 3 HOH 20 170 57 HOH HOH A . D 3 HOH 21 171 59 HOH HOH A . D 3 HOH 22 172 60 HOH HOH A . D 3 HOH 23 173 63 HOH HOH A . D 3 HOH 24 174 64 HOH HOH A . D 3 HOH 25 175 65 HOH HOH A . D 3 HOH 26 176 66 HOH HOH A . D 3 HOH 27 177 67 HOH HOH A . D 3 HOH 28 178 68 HOH HOH A . D 3 HOH 29 179 70 HOH HOH A . D 3 HOH 30 180 71 HOH HOH A . D 3 HOH 31 181 72 HOH HOH A . D 3 HOH 32 182 73 HOH HOH A . D 3 HOH 33 183 74 HOH HOH A . D 3 HOH 34 184 75 HOH HOH A . D 3 HOH 35 185 76 HOH HOH A . D 3 HOH 36 186 2 HOH HOH A . D 3 HOH 37 187 3 HOH HOH A . D 3 HOH 38 188 4 HOH HOH A . D 3 HOH 39 189 6 HOH HOH A . D 3 HOH 40 190 7 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 68 A MSE 66 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2140 ? 1 MORE -52 ? 1 'SSA (A^2)' 12930 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 42.9870000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-08 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-09-14 5 'Structure model' 1 4 2013-04-17 6 'Structure model' 1 5 2013-06-26 7 'Structure model' 1 6 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Database references' 7 7 'Structure model' 'Database references' 8 7 'Structure model' 'Derived calculations' 9 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' audit_author 2 7 'Structure model' citation_author 3 7 'Structure model' database_2 4 7 'Structure model' struct_conn 5 7 'Structure model' struct_ref_seq_dif 6 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_audit_author.identifier_ORCID' 2 7 'Structure model' '_citation_author.identifier_ORCID' 3 7 'Structure model' '_database_2.pdbx_DOI' 4 7 'Structure model' '_database_2.pdbx_database_accession' 5 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 7 'Structure model' '_struct_ref_seq_dif.details' 7 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 5.8857 28.9971 17.1948 -0.1725 -0.1242 -0.0816 -0.0089 0.0133 0.0155 11.9458 3.9491 1.2621 -4.8695 3.5244 -0.7759 0.0194 -0.8252 -1.0076 -0.1127 0.1368 0.3162 0.1841 -0.1601 -0.1563 'X-RAY DIFFRACTION' 2 ? refined 11.8603 34.7075 18.2779 -0.1645 -0.1822 -0.1777 0.0442 0.0230 -0.0286 10.0510 5.7113 2.5845 -3.2718 0.2266 -1.4397 -0.1434 -0.2108 0.3651 -0.0489 0.1067 -0.1207 0.0229 0.0051 0.0367 'X-RAY DIFFRACTION' 3 ? refined -13.6798 23.1851 5.0710 0.1747 0.3257 0.3420 -0.0976 -0.2199 -0.1174 10.0661 0.9326 5.6770 3.0639 7.5595 2.3009 1.1132 -0.7862 -0.5534 0.2488 -0.1528 -0.1619 0.7903 -0.8214 -0.9604 'X-RAY DIFFRACTION' 4 ? refined 1.3176 25.9613 10.4891 0.0376 -0.0799 0.1385 -0.0013 -0.0362 -0.0870 6.8401 0.1887 2.7848 -1.1359 3.0985 -0.5196 0.3721 0.2271 -1.3816 -0.4396 0.0875 0.2890 0.5125 -0.0443 -0.4596 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 A 4 A 20 A 22 ? 'X-RAY DIFFRACTION' ? 2 2 A 21 A 23 A 35 A 37 ? 'X-RAY DIFFRACTION' ? 3 3 A 36 A 38 A 60 A 62 ? 'X-RAY DIFFRACTION' ? 4 4 A 61 A 63 A 145 A 147 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELXD phasing . ? 6 SHELXE 'model building' . ? 7 CCP4 phasing . ? 8 MLPHARE phasing . ? 9 DM phasing . ? 10 O 'model building' . ? 11 Coot 'model building' . ? 12 SOLVE phasing . ? 13 RESOLVE phasing . ? 14 ARP/wARP 'model building' . ? 15 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 115 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 HIS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 116 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 56.94 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 1 ? CG ? A MSE 3 CG 2 1 Y 1 A MSE 1 ? SE ? A MSE 3 SE 3 1 Y 1 A MSE 1 ? CE ? A MSE 3 CE 4 1 Y 1 A GLU 94 ? CG ? A GLU 96 CG 5 1 Y 1 A GLU 94 ? CD ? A GLU 96 CD 6 1 Y 1 A GLU 94 ? OE1 ? A GLU 96 OE1 7 1 Y 1 A GLU 94 ? OE2 ? A GLU 96 OE2 8 1 Y 1 A ARG 96 ? CG ? A ARG 98 CG 9 1 Y 1 A ARG 96 ? CD ? A ARG 98 CD 10 1 Y 1 A ARG 96 ? NE ? A ARG 98 NE 11 1 Y 1 A ARG 96 ? CZ ? A ARG 98 CZ 12 1 Y 1 A ARG 96 ? NH1 ? A ARG 98 NH1 13 1 Y 1 A ARG 96 ? NH2 ? A ARG 98 NH2 14 1 Y 1 A GLU 104 ? CG ? A GLU 106 CG 15 1 Y 1 A GLU 104 ? CD ? A GLU 106 CD 16 1 Y 1 A GLU 104 ? OE1 ? A GLU 106 OE1 17 1 Y 1 A GLU 104 ? OE2 ? A GLU 106 OE2 18 1 Y 1 A SER 127 ? OG ? A SER 129 OG 19 1 Y 1 A ASN 130 ? CG ? A ASN 132 CG 20 1 Y 1 A ASN 130 ? OD1 ? A ASN 132 OD1 21 1 Y 1 A ASN 130 ? ND2 ? A ASN 132 ND2 22 1 Y 1 A SER 131 ? OG ? A SER 133 OG 23 1 Y 1 A HIS 134 ? CG ? A HIS 136 CG 24 1 Y 1 A HIS 134 ? ND1 ? A HIS 136 ND1 25 1 Y 1 A HIS 134 ? CD2 ? A HIS 136 CD2 26 1 Y 1 A HIS 134 ? CE1 ? A HIS 136 CE1 27 1 Y 1 A HIS 134 ? NE2 ? A HIS 136 NE2 28 1 Y 1 A TYR 135 ? CG ? A TYR 137 CG 29 1 Y 1 A TYR 135 ? CD1 ? A TYR 137 CD1 30 1 Y 1 A TYR 135 ? CD2 ? A TYR 137 CD2 31 1 Y 1 A TYR 135 ? CE1 ? A TYR 137 CE1 32 1 Y 1 A TYR 135 ? CE2 ? A TYR 137 CE2 33 1 Y 1 A TYR 135 ? CZ ? A TYR 137 CZ 34 1 Y 1 A TYR 135 ? OH ? A TYR 137 OH 35 1 Y 1 A LYS 137 ? CG ? A LYS 139 CG 36 1 Y 1 A LYS 137 ? CD ? A LYS 139 CD 37 1 Y 1 A LYS 137 ? CE ? A LYS 139 CE 38 1 Y 1 A LYS 137 ? NZ ? A LYS 139 NZ 39 1 Y 1 A ARG 144 ? CG ? A ARG 146 CG 40 1 Y 1 A ARG 144 ? CD ? A ARG 146 CD 41 1 Y 1 A ARG 144 ? NE ? A ARG 146 NE 42 1 Y 1 A ARG 144 ? CZ ? A ARG 146 CZ 43 1 Y 1 A ARG 144 ? NH1 ? A ARG 146 NH1 44 1 Y 1 A ARG 144 ? NH2 ? A ARG 146 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A HIS 0 ? A HIS 2 3 1 Y 1 A ASN 43 ? A ASN 45 4 1 Y 1 A ILE 44 ? A ILE 46 5 1 Y 1 A PRO 45 ? A PRO 47 6 1 Y 1 A MSE 46 ? A MSE 48 7 1 Y 1 A PRO 47 ? A PRO 49 8 1 Y 1 A ASP 48 ? A ASP 50 9 1 Y 1 A THR 49 ? A THR 51 10 1 Y 1 A PRO 50 ? A PRO 52 11 1 Y 1 A TYR 51 ? A TYR 53 12 1 Y 1 A GLY 52 ? A GLY 54 13 1 Y 1 A GLY 117 ? A GLY 119 14 1 Y 1 A ARG 118 ? A ARG 120 15 1 Y 1 A HIS 119 ? A HIS 121 16 1 Y 1 A GLY 120 ? A GLY 122 17 1 Y 1 A LEU 121 ? A LEU 123 18 1 Y 1 A ALA 122 ? A ALA 124 19 1 Y 1 A LEU 123 ? A LEU 125 20 1 Y 1 A LEU 124 ? A LEU 126 21 1 Y 1 A LEU 125 ? A LEU 127 22 1 Y 1 A GLY 126 ? A GLY 128 23 1 Y 1 A ARG 146 ? A ARG 148 24 1 Y 1 A ASP 147 ? A ASP 149 25 1 Y 1 A ASP 148 ? A ASP 150 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #