data_2PLC # _entry.id 2PLC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PLC pdb_00002plc 10.2210/pdb2plc/pdb WWPDB D_1000178479 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PLC _pdbx_database_status.recvd_initial_deposition_date 1997-07-09 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Heinz, D.W.' 1 'Moser, J.' 2 # _citation.id primary _citation.title 'Crystal structure of the phosphatidylinositol-specific phospholipase C from the human pathogen Listeria monocytogenes.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 273 _citation.page_first 269 _citation.page_last 282 _citation.year 1997 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9367761 _citation.pdbx_database_id_DOI 10.1006/jmbi.1997.1290 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Moser, J.' 1 ? primary 'Gerstel, B.' 2 ? primary 'Meyer, J.E.' 3 ? primary 'Chakraborty, T.' 4 ? primary 'Wehland, J.' 5 ? primary 'Heinz, D.W.' 6 ? # _cell.entry_id 2PLC _cell.length_a 82.500 _cell.length_b 82.500 _cell.length_c 92.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PLC _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C' 31225.752 1 3.1.4.10 ? ? ? 2 water nat water 18.015 102 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PI-PLC # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNA SLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHT KKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQF VLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKF ; _entity_poly.pdbx_seq_one_letter_code_can ;VTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNA SLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHT KKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQF VLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 THR n 1 3 THR n 1 4 LYS n 1 5 GLN n 1 6 TRP n 1 7 MET n 1 8 SER n 1 9 ALA n 1 10 LEU n 1 11 PRO n 1 12 ASP n 1 13 THR n 1 14 THR n 1 15 ASN n 1 16 LEU n 1 17 ALA n 1 18 ALA n 1 19 LEU n 1 20 SER n 1 21 ILE n 1 22 PRO n 1 23 GLY n 1 24 THR n 1 25 HIS n 1 26 ASP n 1 27 THR n 1 28 MET n 1 29 SER n 1 30 TYR n 1 31 ASN n 1 32 GLY n 1 33 ASP n 1 34 ILE n 1 35 THR n 1 36 TRP n 1 37 THR n 1 38 LEU n 1 39 THR n 1 40 LYS n 1 41 PRO n 1 42 LEU n 1 43 ALA n 1 44 GLN n 1 45 THR n 1 46 GLN n 1 47 THR n 1 48 MET n 1 49 SER n 1 50 LEU n 1 51 TYR n 1 52 GLN n 1 53 GLN n 1 54 LEU n 1 55 GLU n 1 56 ALA n 1 57 GLY n 1 58 ILE n 1 59 ARG n 1 60 TYR n 1 61 ILE n 1 62 ASP n 1 63 ILE n 1 64 ARG n 1 65 ALA n 1 66 LYS n 1 67 ASP n 1 68 ASN n 1 69 LEU n 1 70 ASN n 1 71 ILE n 1 72 TYR n 1 73 HIS n 1 74 GLY n 1 75 PRO n 1 76 ILE n 1 77 PHE n 1 78 LEU n 1 79 ASN n 1 80 ALA n 1 81 SER n 1 82 LEU n 1 83 SER n 1 84 GLY n 1 85 VAL n 1 86 LEU n 1 87 GLU n 1 88 THR n 1 89 ILE n 1 90 THR n 1 91 GLN n 1 92 PHE n 1 93 LEU n 1 94 LYS n 1 95 LYS n 1 96 ASN n 1 97 PRO n 1 98 LYS n 1 99 GLU n 1 100 THR n 1 101 ILE n 1 102 ILE n 1 103 MET n 1 104 ARG n 1 105 LEU n 1 106 LYS n 1 107 ASP n 1 108 GLU n 1 109 GLN n 1 110 ASN n 1 111 SER n 1 112 ASN n 1 113 ASP n 1 114 SER n 1 115 PHE n 1 116 ASP n 1 117 TYR n 1 118 ARG n 1 119 ILE n 1 120 GLN n 1 121 PRO n 1 122 LEU n 1 123 ILE n 1 124 ASN n 1 125 ILE n 1 126 TYR n 1 127 LYS n 1 128 ASP n 1 129 TYR n 1 130 PHE n 1 131 TYR n 1 132 THR n 1 133 THR n 1 134 PRO n 1 135 ARG n 1 136 THR n 1 137 ASP n 1 138 THR n 1 139 SER n 1 140 ASN n 1 141 LYS n 1 142 ILE n 1 143 PRO n 1 144 THR n 1 145 LEU n 1 146 LYS n 1 147 ASP n 1 148 VAL n 1 149 ARG n 1 150 GLY n 1 151 LYS n 1 152 ILE n 1 153 LEU n 1 154 LEU n 1 155 LEU n 1 156 SER n 1 157 GLU n 1 158 ASN n 1 159 HIS n 1 160 THR n 1 161 LYS n 1 162 LYS n 1 163 PRO n 1 164 LEU n 1 165 VAL n 1 166 ILE n 1 167 ASN n 1 168 SER n 1 169 ARG n 1 170 LYS n 1 171 PHE n 1 172 GLY n 1 173 MET n 1 174 GLN n 1 175 PHE n 1 176 GLY n 1 177 ALA n 1 178 PRO n 1 179 ASN n 1 180 GLN n 1 181 VAL n 1 182 ILE n 1 183 GLN n 1 184 ASP n 1 185 ASP n 1 186 TYR n 1 187 ASN n 1 188 GLY n 1 189 PRO n 1 190 SER n 1 191 VAL n 1 192 LYS n 1 193 THR n 1 194 LYS n 1 195 PHE n 1 196 LYS n 1 197 GLU n 1 198 ILE n 1 199 VAL n 1 200 GLN n 1 201 THR n 1 202 ALA n 1 203 TYR n 1 204 GLN n 1 205 ALA n 1 206 SER n 1 207 LYS n 1 208 ALA n 1 209 ASP n 1 210 ASN n 1 211 LYS n 1 212 LEU n 1 213 PHE n 1 214 LEU n 1 215 ASN n 1 216 HIS n 1 217 ILE n 1 218 SER n 1 219 ALA n 1 220 THR n 1 221 SER n 1 222 LEU n 1 223 THR n 1 224 PHE n 1 225 THR n 1 226 PRO n 1 227 ARG n 1 228 GLN n 1 229 TYR n 1 230 ALA n 1 231 ALA n 1 232 ALA n 1 233 LEU n 1 234 ASN n 1 235 ASN n 1 236 LYS n 1 237 VAL n 1 238 GLU n 1 239 GLN n 1 240 PHE n 1 241 VAL n 1 242 LEU n 1 243 ASN n 1 244 LEU n 1 245 THR n 1 246 SER n 1 247 GLU n 1 248 LYS n 1 249 VAL n 1 250 ARG n 1 251 GLY n 1 252 LEU n 1 253 GLY n 1 254 ILE n 1 255 LEU n 1 256 ILE n 1 257 MET n 1 258 ASP n 1 259 PHE n 1 260 PRO n 1 261 GLU n 1 262 LYS n 1 263 GLN n 1 264 THR n 1 265 ILE n 1 266 LYS n 1 267 ASN n 1 268 ILE n 1 269 ILE n 1 270 LYS n 1 271 ASN n 1 272 ASN n 1 273 LYS n 1 274 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Listeria _entity_src_gen.pdbx_gene_src_gene PLCA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'EGD SEROTYPE 1-2A' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1639 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location 'SECRETED INTO MEDIUM' _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene 'PLCA DELETION VARIANT' _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PLCA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLC_LISMO _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P34024 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTL TKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYR IQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEI VQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PLC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 274 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P34024 _struct_ref_seq.db_align_beg 43 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 316 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 294 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PLC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 55. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 0.1 M NA-HEPES PH 7.5, 0.8 M NA-K-TARTRATE' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1996-06-12 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator NI-FILTER _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2PLC _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.0 _reflns.d_resolution_high 1.9 _reflns.number_obs 25523 _reflns.number_all ? _reflns.percent_possible_obs 88.5 _reflns.pdbx_Rmerge_I_obs 0.0710000 _reflns.pdbx_Rsym_value 0.0690000 _reflns.pdbx_netI_over_sigmaI 8.9 _reflns.B_iso_Wilson_estimate 24.3 _reflns.pdbx_redundancy 3.1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.95 _reflns_shell.percent_possible_all 57.6 _reflns_shell.Rmerge_I_obs 0.2500000 _reflns_shell.pdbx_Rsym_value 0.2020000 _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy 1.5 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PLC _refine.ls_number_reflns_obs 23003 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1000000.0 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20. _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 94.4 _refine.ls_R_factor_obs 0.1980000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1980000 _refine.ls_R_factor_R_free 0.2490000 _refine.ls_R_factor_R_free_error 0.0073 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.66 _refine.ls_number_reflns_R_free 1164 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 33.3 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;RESIDUES 7 - 20 WERE MISSING IN THE ELECTRON DENSITY MAP. THESE RESIDUES WERE IDENTIFIED VIA N-TERMINAL SEQUENCING. ; _refine.pdbx_starting_model 'PDB ENTRY 1PTD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT AND SIG' _refine.pdbx_isotropic_thermal_model 'GROUPED B-FACTOR REFINEME 2 PARAMETERS PER RESIDUE' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PLC _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 20.0 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2208 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 2309 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 20. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.30 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.4 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.08 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.0 _refine_ls_shell.d_res_low 2.09 _refine_ls_shell.number_reflns_R_work 2191 _refine_ls_shell.R_factor_R_work 0.3330000 _refine_ls_shell.percent_reflns_obs 76.0 _refine_ls_shell.R_factor_R_free 0.3490000 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 4.19 _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAM19X.PRO -P19X.PRO 'X-RAY DIFFRACTION' 2 PARAM19.SOL ? 'X-RAY DIFFRACTION' # _struct.entry_id 2PLC _struct.title 'PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C FROM LISTERIA MONOCYTOGENES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PLC _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, PHOSPHOLIPID DEGRADATION, VIRULENCE FACTOR OF HUMAN PATHOGEN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 5 ? ALA A 9 ? GLN A 25 ALA A 29 5 ? 5 HELX_P HELX_P2 2 ILE A 34 ? PRO A 41 ? ILE A 54 PRO A 61 1 ? 8 HELX_P HELX_P3 3 LEU A 50 ? GLY A 57 ? LEU A 70 GLY A 77 1 ? 8 HELX_P HELX_P4 4 SER A 83 ? ASN A 96 ? SER A 103 ASN A 116 1 ? 14 HELX_P HELX_P5 5 PHE A 115 ? ILE A 125 ? PHE A 135 ILE A 145 1 ? 11 HELX_P HELX_P6 6 VAL A 191 ? ALA A 208 ? VAL A 211 ALA A 228 1 ? 18 HELX_P HELX_P7 7 THR A 225 ? LYS A 248 ? THR A 245 LYS A 268 1 ? 24 HELX_P HELX_P8 8 GLU A 261 ? ILE A 269 ? GLU A 281 ILE A 289 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel C 1 2 ? parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 20 ? ASP A 26 ? SER A 40 ASP A 46 A 2 GLY A 253 ? ASP A 258 ? GLY A 273 ASP A 278 A 3 LEU A 212 ? ILE A 217 ? LEU A 232 ILE A 237 A 4 VAL A 181 ? TYR A 186 ? VAL A 201 TYR A 206 B 1 ARG A 59 ? LYS A 66 ? ARG A 79 LYS A 86 B 2 ILE A 101 ? GLU A 108 ? ILE A 121 GLU A 128 B 3 LYS A 151 ? ASN A 158 ? LYS A 171 ASN A 178 C 1 TYR A 131 ? THR A 136 ? TYR A 151 THR A 156 C 2 PHE A 171 ? GLY A 176 ? PHE A 191 GLY A 196 C 3 VAL A 165 ? ILE A 166 ? VAL A 185 ILE A 186 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 21 ? O ILE A 41 N GLY A 253 ? N GLY A 273 A 2 3 O ILE A 254 ? O ILE A 274 N ASN A 215 ? N ASN A 235 A 3 4 O LEU A 212 ? O LEU A 232 N VAL A 181 ? N VAL A 201 B 1 2 O ILE A 61 ? O ILE A 81 N ILE A 102 ? N ILE A 122 B 2 3 O ILE A 101 ? O ILE A 121 N LEU A 153 ? N LEU A 173 # _struct_site.id CIC _struct_site.pdbx_evidence_code Unknown _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'INOSITOL BINDING SITE.' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CIC 2 HIS A 25 ? HIS A 45 . ? 1_555 ? 2 CIC 2 HIS A 73 ? HIS A 93 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PLC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PLC _atom_sites.fract_transf_matrix[1][1] 0.012121 _atom_sites.fract_transf_matrix[1][2] 0.006998 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013996 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010846 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 21 21 VAL VAL A . n A 1 2 THR 2 22 22 THR THR A . n A 1 3 THR 3 23 23 THR THR A . n A 1 4 LYS 4 24 24 LYS LYS A . n A 1 5 GLN 5 25 25 GLN GLN A . n A 1 6 TRP 6 26 26 TRP TRP A . n A 1 7 MET 7 27 27 MET MET A . n A 1 8 SER 8 28 28 SER SER A . n A 1 9 ALA 9 29 29 ALA ALA A . n A 1 10 LEU 10 30 30 LEU LEU A . n A 1 11 PRO 11 31 31 PRO PRO A . n A 1 12 ASP 12 32 32 ASP ASP A . n A 1 13 THR 13 33 33 THR THR A . n A 1 14 THR 14 34 34 THR THR A . n A 1 15 ASN 15 35 35 ASN ASN A . n A 1 16 LEU 16 36 36 LEU LEU A . n A 1 17 ALA 17 37 37 ALA ALA A . n A 1 18 ALA 18 38 38 ALA ALA A . n A 1 19 LEU 19 39 39 LEU LEU A . n A 1 20 SER 20 40 40 SER SER A . n A 1 21 ILE 21 41 41 ILE ILE A . n A 1 22 PRO 22 42 42 PRO PRO A . n A 1 23 GLY 23 43 43 GLY GLY A . n A 1 24 THR 24 44 44 THR THR A . n A 1 25 HIS 25 45 45 HIS HIS A . n A 1 26 ASP 26 46 46 ASP ASP A . n A 1 27 THR 27 47 47 THR THR A . n A 1 28 MET 28 48 48 MET MET A . n A 1 29 SER 29 49 49 SER SER A . n A 1 30 TYR 30 50 50 TYR TYR A . n A 1 31 ASN 31 51 51 ASN ASN A . n A 1 32 GLY 32 52 52 GLY GLY A . n A 1 33 ASP 33 53 53 ASP ASP A . n A 1 34 ILE 34 54 54 ILE ILE A . n A 1 35 THR 35 55 55 THR THR A . n A 1 36 TRP 36 56 56 TRP TRP A . n A 1 37 THR 37 57 57 THR THR A . n A 1 38 LEU 38 58 58 LEU LEU A . n A 1 39 THR 39 59 59 THR THR A . n A 1 40 LYS 40 60 60 LYS LYS A . n A 1 41 PRO 41 61 61 PRO PRO A . n A 1 42 LEU 42 62 62 LEU LEU A . n A 1 43 ALA 43 63 63 ALA ALA A . n A 1 44 GLN 44 64 64 GLN GLN A . n A 1 45 THR 45 65 65 THR THR A . n A 1 46 GLN 46 66 66 GLN GLN A . n A 1 47 THR 47 67 67 THR THR A . n A 1 48 MET 48 68 68 MET MET A . n A 1 49 SER 49 69 69 SER SER A . n A 1 50 LEU 50 70 70 LEU LEU A . n A 1 51 TYR 51 71 71 TYR TYR A . n A 1 52 GLN 52 72 72 GLN GLN A . n A 1 53 GLN 53 73 73 GLN GLN A . n A 1 54 LEU 54 74 74 LEU LEU A . n A 1 55 GLU 55 75 75 GLU GLU A . n A 1 56 ALA 56 76 76 ALA ALA A . n A 1 57 GLY 57 77 77 GLY GLY A . n A 1 58 ILE 58 78 78 ILE ILE A . n A 1 59 ARG 59 79 79 ARG ARG A . n A 1 60 TYR 60 80 80 TYR TYR A . n A 1 61 ILE 61 81 81 ILE ILE A . n A 1 62 ASP 62 82 82 ASP ASP A . n A 1 63 ILE 63 83 83 ILE ILE A . n A 1 64 ARG 64 84 84 ARG ARG A . n A 1 65 ALA 65 85 85 ALA ALA A . n A 1 66 LYS 66 86 86 LYS LYS A . n A 1 67 ASP 67 87 87 ASP ASP A . n A 1 68 ASN 68 88 88 ASN ASN A . n A 1 69 LEU 69 89 89 LEU LEU A . n A 1 70 ASN 70 90 90 ASN ASN A . n A 1 71 ILE 71 91 91 ILE ILE A . n A 1 72 TYR 72 92 92 TYR TYR A . n A 1 73 HIS 73 93 93 HIS HIS A . n A 1 74 GLY 74 94 94 GLY GLY A . n A 1 75 PRO 75 95 95 PRO PRO A . n A 1 76 ILE 76 96 96 ILE ILE A . n A 1 77 PHE 77 97 97 PHE PHE A . n A 1 78 LEU 78 98 98 LEU LEU A . n A 1 79 ASN 79 99 99 ASN ASN A . n A 1 80 ALA 80 100 100 ALA ALA A . n A 1 81 SER 81 101 101 SER SER A . n A 1 82 LEU 82 102 102 LEU LEU A . n A 1 83 SER 83 103 103 SER SER A . n A 1 84 GLY 84 104 104 GLY GLY A . n A 1 85 VAL 85 105 105 VAL VAL A . n A 1 86 LEU 86 106 106 LEU LEU A . n A 1 87 GLU 87 107 107 GLU GLU A . n A 1 88 THR 88 108 108 THR THR A . n A 1 89 ILE 89 109 109 ILE ILE A . n A 1 90 THR 90 110 110 THR THR A . n A 1 91 GLN 91 111 111 GLN GLN A . n A 1 92 PHE 92 112 112 PHE PHE A . n A 1 93 LEU 93 113 113 LEU LEU A . n A 1 94 LYS 94 114 114 LYS LYS A . n A 1 95 LYS 95 115 115 LYS LYS A . n A 1 96 ASN 96 116 116 ASN ASN A . n A 1 97 PRO 97 117 117 PRO PRO A . n A 1 98 LYS 98 118 118 LYS LYS A . n A 1 99 GLU 99 119 119 GLU GLU A . n A 1 100 THR 100 120 120 THR THR A . n A 1 101 ILE 101 121 121 ILE ILE A . n A 1 102 ILE 102 122 122 ILE ILE A . n A 1 103 MET 103 123 123 MET MET A . n A 1 104 ARG 104 124 124 ARG ARG A . n A 1 105 LEU 105 125 125 LEU LEU A . n A 1 106 LYS 106 126 126 LYS LYS A . n A 1 107 ASP 107 127 127 ASP ASP A . n A 1 108 GLU 108 128 128 GLU GLU A . n A 1 109 GLN 109 129 129 GLN GLN A . n A 1 110 ASN 110 130 130 ASN ASN A . n A 1 111 SER 111 131 131 SER SER A . n A 1 112 ASN 112 132 132 ASN ASN A . n A 1 113 ASP 113 133 133 ASP ASP A . n A 1 114 SER 114 134 134 SER SER A . n A 1 115 PHE 115 135 135 PHE PHE A . n A 1 116 ASP 116 136 136 ASP ASP A . n A 1 117 TYR 117 137 137 TYR TYR A . n A 1 118 ARG 118 138 138 ARG ARG A . n A 1 119 ILE 119 139 139 ILE ILE A . n A 1 120 GLN 120 140 140 GLN GLN A . n A 1 121 PRO 121 141 141 PRO PRO A . n A 1 122 LEU 122 142 142 LEU LEU A . n A 1 123 ILE 123 143 143 ILE ILE A . n A 1 124 ASN 124 144 144 ASN ASN A . n A 1 125 ILE 125 145 145 ILE ILE A . n A 1 126 TYR 126 146 146 TYR TYR A . n A 1 127 LYS 127 147 147 LYS LYS A . n A 1 128 ASP 128 148 148 ASP ASP A . n A 1 129 TYR 129 149 149 TYR TYR A . n A 1 130 PHE 130 150 150 PHE PHE A . n A 1 131 TYR 131 151 151 TYR TYR A . n A 1 132 THR 132 152 152 THR THR A . n A 1 133 THR 133 153 153 THR THR A . n A 1 134 PRO 134 154 154 PRO PRO A . n A 1 135 ARG 135 155 155 ARG ARG A . n A 1 136 THR 136 156 156 THR THR A . n A 1 137 ASP 137 157 157 ASP ASP A . n A 1 138 THR 138 158 158 THR THR A . n A 1 139 SER 139 159 159 SER SER A . n A 1 140 ASN 140 160 160 ASN ASN A . n A 1 141 LYS 141 161 161 LYS LYS A . n A 1 142 ILE 142 162 162 ILE ILE A . n A 1 143 PRO 143 163 163 PRO PRO A . n A 1 144 THR 144 164 164 THR THR A . n A 1 145 LEU 145 165 165 LEU LEU A . n A 1 146 LYS 146 166 166 LYS LYS A . n A 1 147 ASP 147 167 167 ASP ASP A . n A 1 148 VAL 148 168 168 VAL VAL A . n A 1 149 ARG 149 169 169 ARG ARG A . n A 1 150 GLY 150 170 170 GLY GLY A . n A 1 151 LYS 151 171 171 LYS LYS A . n A 1 152 ILE 152 172 172 ILE ILE A . n A 1 153 LEU 153 173 173 LEU LEU A . n A 1 154 LEU 154 174 174 LEU LEU A . n A 1 155 LEU 155 175 175 LEU LEU A . n A 1 156 SER 156 176 176 SER SER A . n A 1 157 GLU 157 177 177 GLU GLU A . n A 1 158 ASN 158 178 178 ASN ASN A . n A 1 159 HIS 159 179 179 HIS HIS A . n A 1 160 THR 160 180 180 THR THR A . n A 1 161 LYS 161 181 181 LYS LYS A . n A 1 162 LYS 162 182 182 LYS LYS A . n A 1 163 PRO 163 183 183 PRO PRO A . n A 1 164 LEU 164 184 184 LEU LEU A . n A 1 165 VAL 165 185 185 VAL VAL A . n A 1 166 ILE 166 186 186 ILE ILE A . n A 1 167 ASN 167 187 187 ASN ASN A . n A 1 168 SER 168 188 188 SER SER A . n A 1 169 ARG 169 189 189 ARG ARG A . n A 1 170 LYS 170 190 190 LYS LYS A . n A 1 171 PHE 171 191 191 PHE PHE A . n A 1 172 GLY 172 192 192 GLY GLY A . n A 1 173 MET 173 193 193 MET MET A . n A 1 174 GLN 174 194 194 GLN GLN A . n A 1 175 PHE 175 195 195 PHE PHE A . n A 1 176 GLY 176 196 196 GLY GLY A . n A 1 177 ALA 177 197 197 ALA ALA A . n A 1 178 PRO 178 198 198 PRO PRO A . n A 1 179 ASN 179 199 199 ASN ASN A . n A 1 180 GLN 180 200 200 GLN GLN A . n A 1 181 VAL 181 201 201 VAL VAL A . n A 1 182 ILE 182 202 202 ILE ILE A . n A 1 183 GLN 183 203 203 GLN GLN A . n A 1 184 ASP 184 204 204 ASP ASP A . n A 1 185 ASP 185 205 205 ASP ASP A . n A 1 186 TYR 186 206 206 TYR TYR A . n A 1 187 ASN 187 207 207 ASN ASN A . n A 1 188 GLY 188 208 208 GLY GLY A . n A 1 189 PRO 189 209 209 PRO PRO A . n A 1 190 SER 190 210 210 SER SER A . n A 1 191 VAL 191 211 211 VAL VAL A . n A 1 192 LYS 192 212 212 LYS LYS A . n A 1 193 THR 193 213 213 THR THR A . n A 1 194 LYS 194 214 214 LYS LYS A . n A 1 195 PHE 195 215 215 PHE PHE A . n A 1 196 LYS 196 216 216 LYS LYS A . n A 1 197 GLU 197 217 217 GLU GLU A . n A 1 198 ILE 198 218 218 ILE ILE A . n A 1 199 VAL 199 219 219 VAL VAL A . n A 1 200 GLN 200 220 220 GLN GLN A . n A 1 201 THR 201 221 221 THR THR A . n A 1 202 ALA 202 222 222 ALA ALA A . n A 1 203 TYR 203 223 223 TYR TYR A . n A 1 204 GLN 204 224 224 GLN GLN A . n A 1 205 ALA 205 225 225 ALA ALA A . n A 1 206 SER 206 226 226 SER SER A . n A 1 207 LYS 207 227 227 LYS LYS A . n A 1 208 ALA 208 228 228 ALA ALA A . n A 1 209 ASP 209 229 229 ASP ASP A . n A 1 210 ASN 210 230 230 ASN ASN A . n A 1 211 LYS 211 231 231 LYS LYS A . n A 1 212 LEU 212 232 232 LEU LEU A . n A 1 213 PHE 213 233 233 PHE PHE A . n A 1 214 LEU 214 234 234 LEU LEU A . n A 1 215 ASN 215 235 235 ASN ASN A . n A 1 216 HIS 216 236 236 HIS HIS A . n A 1 217 ILE 217 237 237 ILE ILE A . n A 1 218 SER 218 238 238 SER SER A . n A 1 219 ALA 219 239 239 ALA ALA A . n A 1 220 THR 220 240 240 THR THR A . n A 1 221 SER 221 241 241 SER SER A . n A 1 222 LEU 222 242 242 LEU LEU A . n A 1 223 THR 223 243 243 THR THR A . n A 1 224 PHE 224 244 244 PHE PHE A . n A 1 225 THR 225 245 245 THR THR A . n A 1 226 PRO 226 246 246 PRO PRO A . n A 1 227 ARG 227 247 247 ARG ARG A . n A 1 228 GLN 228 248 248 GLN GLN A . n A 1 229 TYR 229 249 249 TYR TYR A . n A 1 230 ALA 230 250 250 ALA ALA A . n A 1 231 ALA 231 251 251 ALA ALA A . n A 1 232 ALA 232 252 252 ALA ALA A . n A 1 233 LEU 233 253 253 LEU LEU A . n A 1 234 ASN 234 254 254 ASN ASN A . n A 1 235 ASN 235 255 255 ASN ASN A . n A 1 236 LYS 236 256 256 LYS LYS A . n A 1 237 VAL 237 257 257 VAL VAL A . n A 1 238 GLU 238 258 258 GLU GLU A . n A 1 239 GLN 239 259 259 GLN GLN A . n A 1 240 PHE 240 260 260 PHE PHE A . n A 1 241 VAL 241 261 261 VAL VAL A . n A 1 242 LEU 242 262 262 LEU LEU A . n A 1 243 ASN 243 263 263 ASN ASN A . n A 1 244 LEU 244 264 264 LEU LEU A . n A 1 245 THR 245 265 265 THR THR A . n A 1 246 SER 246 266 266 SER SER A . n A 1 247 GLU 247 267 267 GLU GLU A . n A 1 248 LYS 248 268 268 LYS LYS A . n A 1 249 VAL 249 269 269 VAL VAL A . n A 1 250 ARG 250 270 270 ARG ARG A . n A 1 251 GLY 251 271 271 GLY GLY A . n A 1 252 LEU 252 272 272 LEU LEU A . n A 1 253 GLY 253 273 273 GLY GLY A . n A 1 254 ILE 254 274 274 ILE ILE A . n A 1 255 LEU 255 275 275 LEU LEU A . n A 1 256 ILE 256 276 276 ILE ILE A . n A 1 257 MET 257 277 277 MET MET A . n A 1 258 ASP 258 278 278 ASP ASP A . n A 1 259 PHE 259 279 279 PHE PHE A . n A 1 260 PRO 260 280 280 PRO PRO A . n A 1 261 GLU 261 281 281 GLU GLU A . n A 1 262 LYS 262 282 282 LYS LYS A . n A 1 263 GLN 263 283 283 GLN GLN A . n A 1 264 THR 264 284 284 THR THR A . n A 1 265 ILE 265 285 285 ILE ILE A . n A 1 266 LYS 266 286 286 LYS LYS A . n A 1 267 ASN 267 287 287 ASN ASN A . n A 1 268 ILE 268 288 288 ILE ILE A . n A 1 269 ILE 269 289 289 ILE ILE A . n A 1 270 LYS 270 290 290 LYS LYS A . n A 1 271 ASN 271 291 291 ASN ASN A . n A 1 272 ASN 272 292 292 ASN ASN A . n A 1 273 LYS 273 293 293 LYS LYS A . n A 1 274 PHE 274 294 294 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 295 295 HOH HOH A . B 2 HOH 2 296 296 HOH HOH A . B 2 HOH 3 297 297 HOH HOH A . B 2 HOH 4 298 298 HOH HOH A . B 2 HOH 5 299 299 HOH HOH A . B 2 HOH 6 300 300 HOH HOH A . B 2 HOH 7 301 301 HOH HOH A . B 2 HOH 8 302 302 HOH HOH A . B 2 HOH 9 303 303 HOH HOH A . B 2 HOH 10 304 304 HOH HOH A . B 2 HOH 11 305 305 HOH HOH A . B 2 HOH 12 306 306 HOH HOH A . B 2 HOH 13 307 307 HOH HOH A . B 2 HOH 14 308 308 HOH HOH A . B 2 HOH 15 309 309 HOH HOH A . B 2 HOH 16 310 310 HOH HOH A . B 2 HOH 17 311 311 HOH HOH A . B 2 HOH 18 312 312 HOH HOH A . B 2 HOH 19 313 313 HOH HOH A . B 2 HOH 20 314 314 HOH HOH A . B 2 HOH 21 315 315 HOH HOH A . B 2 HOH 22 316 316 HOH HOH A . B 2 HOH 23 317 317 HOH HOH A . B 2 HOH 24 318 318 HOH HOH A . B 2 HOH 25 319 319 HOH HOH A . B 2 HOH 26 320 320 HOH HOH A . B 2 HOH 27 321 321 HOH HOH A . B 2 HOH 28 322 322 HOH HOH A . B 2 HOH 29 323 323 HOH HOH A . B 2 HOH 30 324 324 HOH HOH A . B 2 HOH 31 325 325 HOH HOH A . B 2 HOH 32 326 326 HOH HOH A . B 2 HOH 33 327 327 HOH HOH A . B 2 HOH 34 328 328 HOH HOH A . B 2 HOH 35 329 329 HOH HOH A . B 2 HOH 36 330 330 HOH HOH A . B 2 HOH 37 331 331 HOH HOH A . B 2 HOH 38 332 332 HOH HOH A . B 2 HOH 39 333 333 HOH HOH A . B 2 HOH 40 334 334 HOH HOH A . B 2 HOH 41 335 335 HOH HOH A . B 2 HOH 42 336 336 HOH HOH A . B 2 HOH 43 337 337 HOH HOH A . B 2 HOH 44 338 338 HOH HOH A . B 2 HOH 45 339 339 HOH HOH A . B 2 HOH 46 340 340 HOH HOH A . B 2 HOH 47 341 341 HOH HOH A . B 2 HOH 48 342 342 HOH HOH A . B 2 HOH 49 343 343 HOH HOH A . B 2 HOH 50 344 344 HOH HOH A . B 2 HOH 51 345 345 HOH HOH A . B 2 HOH 52 346 346 HOH HOH A . B 2 HOH 53 347 347 HOH HOH A . B 2 HOH 54 348 348 HOH HOH A . B 2 HOH 55 349 349 HOH HOH A . B 2 HOH 56 350 350 HOH HOH A . B 2 HOH 57 351 351 HOH HOH A . B 2 HOH 58 352 352 HOH HOH A . B 2 HOH 59 353 353 HOH HOH A . B 2 HOH 60 354 354 HOH HOH A . B 2 HOH 61 355 355 HOH HOH A . B 2 HOH 62 356 356 HOH HOH A . B 2 HOH 63 357 357 HOH HOH A . B 2 HOH 64 358 358 HOH HOH A . B 2 HOH 65 359 359 HOH HOH A . B 2 HOH 66 360 360 HOH HOH A . B 2 HOH 67 361 361 HOH HOH A . B 2 HOH 68 362 362 HOH HOH A . B 2 HOH 69 363 363 HOH HOH A . B 2 HOH 70 364 364 HOH HOH A . B 2 HOH 71 365 365 HOH HOH A . B 2 HOH 72 366 366 HOH HOH A . B 2 HOH 73 367 367 HOH HOH A . B 2 HOH 74 368 368 HOH HOH A . B 2 HOH 75 369 369 HOH HOH A . B 2 HOH 76 370 370 HOH HOH A . B 2 HOH 77 371 371 HOH HOH A . B 2 HOH 78 372 372 HOH HOH A . B 2 HOH 79 373 373 HOH HOH A . B 2 HOH 80 374 374 HOH HOH A . B 2 HOH 81 375 375 HOH HOH A . B 2 HOH 82 376 376 HOH HOH A . B 2 HOH 83 377 377 HOH HOH A . B 2 HOH 84 378 378 HOH HOH A . B 2 HOH 85 379 379 HOH HOH A . B 2 HOH 86 380 380 HOH HOH A . B 2 HOH 87 381 381 HOH HOH A . B 2 HOH 88 382 382 HOH HOH A . B 2 HOH 89 383 383 HOH HOH A . B 2 HOH 90 384 384 HOH HOH A . B 2 HOH 91 385 385 HOH HOH A . B 2 HOH 92 386 386 HOH HOH A . B 2 HOH 93 387 387 HOH HOH A . B 2 HOH 94 388 388 HOH HOH A . B 2 HOH 95 389 389 HOH HOH A . B 2 HOH 96 390 390 HOH HOH A . B 2 HOH 97 391 391 HOH HOH A . B 2 HOH 98 392 392 HOH HOH A . B 2 HOH 99 393 393 HOH HOH A . B 2 HOH 100 394 394 HOH HOH A . B 2 HOH 101 395 395 HOH HOH A . B 2 HOH 102 396 396 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-01-14 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' Other 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.8 ? 1 X-PLOR refinement 3.8 ? 2 XDS 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 X-PLOR phasing 3.8 ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 25 ? ? -141.62 42.43 2 1 ASP A 87 ? ? -58.64 -8.14 3 1 GLN A 129 ? ? -140.08 54.94 4 1 ASN A 130 ? ? -49.04 103.96 5 1 SER A 131 ? ? -178.03 -3.30 6 1 ASN A 160 ? ? 33.49 43.30 7 1 ASN A 187 ? ? 73.09 -116.92 8 1 ASN A 207 ? ? -66.63 82.89 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PTD _pdbx_initial_refinement_model.details 'PDB ENTRY 1PTD' #