data_2PXE # _entry.id 2PXE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PXE pdb_00002pxe 10.2210/pdb2pxe/pdb NDB PR0276 ? ? RCSB RCSB042885 ? ? WWPDB D_1000042885 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1DUL _pdbx_database_related.details 'Original structure solved by Batey, et al' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2PXE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Keel, A.Y.' 1 'Rambo, R.P.' 2 'Batey, R.T.' 3 'Kieft, J.S.' 4 # _citation.id primary _citation.title 'A General Strategy to Solve the Phase Problem in RNA Crystallography.' _citation.journal_abbrev Structure _citation.journal_volume 15 _citation.page_first 761 _citation.page_last 772 _citation.year 2007 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17637337 _citation.pdbx_database_id_DOI 10.1016/j.str.2007.06.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Keel, A.Y.' 1 ? primary 'Rambo, R.P.' 2 ? primary 'Batey, R.T.' 3 ? primary 'Kieft, J.S.' 4 ? # _cell.entry_id 2PXE _cell.length_a 132.480 _cell.length_b 73.410 _cell.length_c 33.160 _cell.angle_alpha 90.00 _cell.angle_beta 94.65 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PXE _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '4.5 S RNA' 15885.515 1 ? 'C132G, A175G, G176U' 'DOMAIN IV' ? 2 polymer man 'Signal recognition particle protein' 12336.646 1 ? ? 'C TERMINAL DOMAIN (RESIDUES 328-432)' ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 7 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Fifty-four homolog, p48' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGGUCC GGGUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGGUCC B ? 2 'polypeptide(L)' no yes ;FDLNDFLEQLRQMKN(MSE)GG(MSE)ASL(MSE)GKLPG(MSE)GQIPDNVKSQ(MSE)DDKVLVR(MSE)EAIINS (MSE)T(MSE)KERAKPEIIKGSRKRRIAAGSG(MSE)QVQDVNRLLKQFDD(MSE)QR(MSE)(MSE)KK(MSE) ; ;FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGM QVQDVNRLLKQFDDMQRMMKKM ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 U n 1 5 C n 1 6 U n 1 7 G n 1 8 U n 1 9 U n 1 10 U n 1 11 A n 1 12 C n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 U n 1 18 C n 1 19 A n 1 20 G n 1 21 G n 1 22 U n 1 23 C n 1 24 C n 1 25 G n 1 26 A n 1 27 A n 1 28 A n 1 29 G n 1 30 G n 1 31 A n 1 32 A n 1 33 G n 1 34 C n 1 35 A n 1 36 G n 1 37 C n 1 38 C n 1 39 A n 1 40 A n 1 41 G n 1 42 G n 1 43 C n 1 44 A n 1 45 G n 1 46 G n 1 47 U n 1 48 C n 1 49 C n 2 1 PHE n 2 2 ASP n 2 3 LEU n 2 4 ASN n 2 5 ASP n 2 6 PHE n 2 7 LEU n 2 8 GLU n 2 9 GLN n 2 10 LEU n 2 11 ARG n 2 12 GLN n 2 13 MET n 2 14 LYS n 2 15 ASN n 2 16 MSE n 2 17 GLY n 2 18 GLY n 2 19 MSE n 2 20 ALA n 2 21 SER n 2 22 LEU n 2 23 MSE n 2 24 GLY n 2 25 LYS n 2 26 LEU n 2 27 PRO n 2 28 GLY n 2 29 MSE n 2 30 GLY n 2 31 GLN n 2 32 ILE n 2 33 PRO n 2 34 ASP n 2 35 ASN n 2 36 VAL n 2 37 LYS n 2 38 SER n 2 39 GLN n 2 40 MSE n 2 41 ASP n 2 42 ASP n 2 43 LYS n 2 44 VAL n 2 45 LEU n 2 46 VAL n 2 47 ARG n 2 48 MSE n 2 49 GLU n 2 50 ALA n 2 51 ILE n 2 52 ILE n 2 53 ASN n 2 54 SER n 2 55 MSE n 2 56 THR n 2 57 MSE n 2 58 LYS n 2 59 GLU n 2 60 ARG n 2 61 ALA n 2 62 LYS n 2 63 PRO n 2 64 GLU n 2 65 ILE n 2 66 ILE n 2 67 LYS n 2 68 GLY n 2 69 SER n 2 70 ARG n 2 71 LYS n 2 72 ARG n 2 73 ARG n 2 74 ILE n 2 75 ALA n 2 76 ALA n 2 77 GLY n 2 78 SER n 2 79 GLY n 2 80 MSE n 2 81 GLN n 2 82 VAL n 2 83 GLN n 2 84 ASP n 2 85 VAL n 2 86 ASN n 2 87 ARG n 2 88 LEU n 2 89 LEU n 2 90 LYS n 2 91 GLN n 2 92 PHE n 2 93 ASP n 2 94 ASP n 2 95 MSE n 2 96 GLN n 2 97 ARG n 2 98 MSE n 2 99 MSE n 2 100 LYS n 2 101 LYS n 2 102 MSE n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ffh _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(pLysS)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details synthetic # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SRP54_ECOLI P0AGD7 2 ;FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGM QVQDVNRLLKQFDDMQRMMKKM ; 329 ? 2 PDB 2PXE 2PXE 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PXE A 1 ? 102 ? P0AGD7 329 ? 430 ? 1 82 2 2 2PXE B 1 ? 49 ? 2PXE 130 ? 178 ? 130 178 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PXE MSE A 16 G UNP P0AGD7 MET 344 'modified residue' 9 1 1 2PXE MSE A 19 J UNP P0AGD7 MET 347 'modified residue' 9 2 1 2PXE MSE A 23 N UNP P0AGD7 MET 351 'modified residue' 9 3 1 2PXE MSE A 29 T UNP P0AGD7 MET 357 'modified residue' 9 4 1 2PXE MSE A 40 E UNP P0AGD7 MET 368 'modified residue' 10 5 1 2PXE MSE A 48 ? UNP P0AGD7 MET 376 'modified residue' 28 6 1 2PXE MSE A 55 ? UNP P0AGD7 MET 383 'modified residue' 35 7 1 2PXE MSE A 57 ? UNP P0AGD7 MET 385 'modified residue' 37 8 1 2PXE SER A 78 ? UNP P0AGD7 CYS 406 'engineered mutation' 58 9 1 2PXE MSE A 80 ? UNP P0AGD7 MET 408 'modified residue' 60 10 1 2PXE MSE A 95 ? UNP P0AGD7 MET 423 'modified residue' 75 11 1 2PXE MSE A 98 ? UNP P0AGD7 MET 426 'modified residue' 78 12 1 2PXE MSE A 99 ? UNP P0AGD7 MET 427 'modified residue' 79 13 1 2PXE MSE A 102 ? UNP P0AGD7 MET 430 'modified residue' 82 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2PXE _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_percent_sol 56.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '20Mm NaOH-MES pH 5.6, 200mM KCl, 10% Isopropanol, 5mM Cobalt Hexamine, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 NaOH-MES ? ? ? 1 2 1 KCl ? ? ? 1 3 1 Isopropanol ? ? ? 1 4 1 'Cobalt Hexamine' ? ? ? 1 5 1 H2O ? ? ? 1 6 2 NaOH-MES ? ? ? 1 7 2 KCl ? ? ? 1 8 2 Isopropanol ? ? ? 1 9 2 'Cobalt Hexamine' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 2005-07-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2PXE _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 37.750 _reflns.number_obs 40894 _reflns.pdbx_scaling_rejects 1103 _reflns.pdbx_Rmerge_I_obs 0.121 _reflns.pdbx_netI_over_sigmaI 6.500 _reflns.pdbx_chi_squared 0.970 _reflns.pdbx_redundancy 3.570 _reflns.percent_possible_obs 97.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.00 2.07 ? 13439 ? 0.386 2.9 ? 0.920 3.39 ? 3964 92.70 ? 1 2.07 2.15 ? 14291 ? 0.380 3.0 ? 0.970 3.52 ? 4053 97.20 ? 2 2.15 2.25 ? 14146 ? 0.365 3.2 ? 1.000 3.51 ? 4016 95.80 ? 3 2.25 2.37 ? 14501 ? 0.359 3.3 ? 1.060 3.50 ? 4131 96.20 ? 4 2.37 2.52 ? 14372 ? 0.327 3.5 ? 1.020 3.50 ? 4091 98.10 ? 5 2.52 2.71 ? 14305 ? 0.293 3.9 ? 1.030 3.51 ? 4061 97.70 ? 6 2.71 2.99 ? 14715 ? 0.207 4.9 ? 0.990 3.53 ? 4143 97.90 ? 7 2.99 3.42 ? 14968 ? 0.109 7.6 ? 0.940 3.61 ? 4119 98.50 ? 8 3.42 4.31 ? 15906 ? 0.068 12.4 ? 0.880 3.76 ? 4187 99.10 ? 9 4.31 37.75 ? 16297 ? 0.053 18.4 ? 0.860 3.81 ? 4129 97.80 ? 10 # _refine.entry_id 2PXE _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 50.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 96.700 _refine.ls_number_reflns_obs 40729 _refine.ls_R_factor_R_work 0.2338 _refine.ls_R_factor_R_free 0.2768 _refine.ls_percent_reflns_R_free 9.500 _refine.ls_number_reflns_R_free 3993 _refine.B_iso_mean 29.895 _refine.solvent_model_param_bsol 49.911 _refine.aniso_B[1][1] 1.095 _refine.aniso_B[2][2] -3.299 _refine.aniso_B[3][3] 2.204 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.467 _refine.aniso_B[2][3] 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB 1DUL' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 533 _refine_hist.pdbx_number_atoms_nucleic_acid 1052 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1634 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 50.000 # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:cohex.param ? 'X-RAY DIFFRACTION' 5 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2PXE _struct.title 'Variant 4 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PXE _struct_keywords.text 'GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN-RNA COMPLEX' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP B 2 ? GLU B 8 ? ASP A 2 GLU A 8 1 ? 7 HELX_P HELX_P2 2 LYS B 43 ? ASN B 53 ? LYS A 23 ASN A 33 1 ? 11 HELX_P HELX_P3 3 THR B 56 ? LYS B 62 ? THR A 36 LYS A 42 1 ? 7 HELX_P HELX_P4 4 PRO B 63 ? ILE B 66 ? PRO A 43 ILE A 46 5 ? 4 HELX_P HELX_P5 5 LYS B 67 ? SER B 78 ? LYS A 47 SER A 58 1 ? 12 HELX_P HELX_P6 6 GLN B 81 ? MSE B 99 ? GLN A 61 MSE A 79 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ARG 47 C ? ? ? 1_555 B MSE 48 N ? ? A ARG 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? B MSE 48 C ? ? ? 1_555 B GLU 49 N ? ? A MSE 28 A GLU 29 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? B SER 54 C ? ? ? 1_555 B MSE 55 N ? ? A SER 34 A MSE 35 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? B MSE 55 C ? ? ? 1_555 B THR 56 N ? ? A MSE 35 A THR 36 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? B THR 56 C ? ? ? 1_555 B MSE 57 N ? ? A THR 36 A MSE 37 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale6 covale both ? B MSE 57 C ? ? ? 1_555 B LYS 58 N ? ? A MSE 37 A LYS 38 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? B GLY 79 C ? ? ? 1_555 B MSE 80 N ? ? A GLY 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? B MSE 80 C ? ? ? 1_555 B GLN 81 N ? ? A MSE 60 A GLN 61 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale9 covale both ? B ASP 94 C ? ? ? 1_555 B MSE 95 N ? ? A ASP 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale10 covale both ? B MSE 95 C ? ? ? 1_555 B GLN 96 N ? ? A MSE 75 A GLN 76 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale11 covale both ? B ARG 97 C ? ? ? 1_555 B MSE 98 N ? ? A ARG 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? B MSE 98 C ? ? ? 1_555 B MSE 99 N ? ? A MSE 78 A MSE 79 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale13 covale both ? B MSE 99 C ? ? ? 1_555 B LYS 100 N ? ? A MSE 79 A LYS 80 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale14 covale both ? B LYS 101 C ? ? ? 1_555 B MSE 102 N ? ? A LYS 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.333 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 49 N3 ? ? B G 130 B C 178 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 49 O2 ? ? B G 130 B C 178 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 49 N4 ? ? B G 130 B C 178 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 48 N3 ? ? B G 131 B C 177 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 48 O2 ? ? B G 131 B C 177 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 48 N4 ? ? B G 131 B C 177 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A U 47 O2 ? ? B G 132 B U 176 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A U 47 N3 ? ? B G 132 B U 176 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 46 O6 ? ? B U 133 B G 175 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 46 N1 ? ? B U 133 B G 175 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 45 N1 ? ? B C 134 B G 174 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 45 O6 ? ? B C 134 B G 174 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 45 N2 ? ? B C 134 B G 174 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 44 N1 ? ? B U 135 B A 173 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 44 N6 ? ? B U 135 B A 173 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 43 N3 ? ? B G 136 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 43 O2 ? ? B G 136 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 43 N4 ? ? B G 136 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A G 42 O6 ? ? B U 137 B G 171 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A U 8 O2 ? ? ? 1_555 A G 42 N1 ? ? B U 137 B G 171 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A U 9 N3 ? ? ? 1_555 A G 41 O6 ? ? B U 138 B G 170 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 41 N1 ? ? B U 138 B G 170 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 40 N1 ? ? B U 139 B A 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 40 N6 ? ? B U 139 B A 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 38 N3 ? ? B G 144 B C 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 38 O2 ? ? B G 144 B C 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 38 N4 ? ? B G 144 B C 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 37 N3 ? ? B G 145 B C 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 37 O2 ? ? B G 145 B C 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 37 N4 ? ? B G 145 B C 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 17 N3 ? ? ? 1_555 A G 36 O6 ? ? B U 146 B G 165 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog32 hydrog ? ? A U 17 O2 ? ? ? 1_555 A G 36 N1 ? ? B U 146 B G 165 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? A C 18 O2 ? ? ? 1_555 A A 35 N6 ? ? B C 147 B A 164 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A A 19 N6 ? ? ? 1_555 A C 34 N3 ? ? B A 148 B C 163 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog35 hydrog ? ? A A 19 N7 ? ? ? 1_555 A C 34 N4 ? ? B A 148 B C 163 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog36 hydrog ? ? A G 20 O6 ? ? ? 1_555 A G 33 N2 ? ? B G 149 B G 162 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 21 N1 ? ? ? 1_555 A A 32 N1 ? ? B G 150 B A 161 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog38 hydrog ? ? A G 21 O6 ? ? ? 1_555 A A 32 N6 ? ? B G 150 B A 161 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 31 N1 ? ? B U 151 B A 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 31 N6 ? ? B U 151 B A 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 30 N1 ? ? B C 152 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 30 O6 ? ? B C 152 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 30 N2 ? ? B C 152 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 29 N1 ? ? B C 153 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 29 O6 ? ? B C 153 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 29 N2 ? ? B C 153 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 25 N2 ? ? ? 1_555 A A 28 N7 ? ? B G 154 B A 157 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NCO 201 ? 6 'BINDING SITE FOR RESIDUE NCO B 201' AC2 Software B NCO 202 ? 5 'BINDING SITE FOR RESIDUE NCO B 202' AC3 Software B NCO 203 ? 4 'BINDING SITE FOR RESIDUE NCO B 203' AC4 Software B NCO 204 ? 2 'BINDING SITE FOR RESIDUE NCO B 204' AC5 Software B NCO 205 ? 2 'BINDING SITE FOR RESIDUE NCO B 205' AC6 Software B NCO 206 ? 4 'BINDING SITE FOR RESIDUE NCO B 206' AC7 Software B NCO 207 ? 7 'BINDING SITE FOR RESIDUE NCO B 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 G A 7 ? G B 136 . ? 1_555 ? 2 AC1 6 U A 8 ? U B 137 . ? 1_555 ? 3 AC1 6 U A 9 ? U B 138 . ? 1_555 ? 4 AC1 6 A A 40 ? A B 169 . ? 1_555 ? 5 AC1 6 G A 41 ? G B 170 . ? 1_555 ? 6 AC1 6 G A 42 ? G B 171 . ? 1_555 ? 7 AC2 5 G A 15 ? G B 144 . ? 1_555 ? 8 AC2 5 G A 16 ? G B 145 . ? 1_555 ? 9 AC2 5 U A 17 ? U B 146 . ? 1_555 ? 10 AC2 5 C A 34 ? C B 163 . ? 1_555 ? 11 AC2 5 A A 35 ? A B 164 . ? 1_555 ? 12 AC3 4 A A 19 ? A B 148 . ? 1_555 ? 13 AC3 4 G A 20 ? G B 149 . ? 1_555 ? 14 AC3 4 G A 21 ? G B 150 . ? 1_555 ? 15 AC3 4 U A 22 ? U B 151 . ? 1_555 ? 16 AC4 2 G A 25 ? G B 154 . ? 1_555 ? 17 AC4 2 A A 27 ? A B 156 . ? 1_555 ? 18 AC5 2 G A 29 ? G B 158 . ? 1_555 ? 19 AC5 2 G A 30 ? G B 159 . ? 1_555 ? 20 AC6 4 U A 17 ? U B 146 . ? 1_555 ? 21 AC6 4 C A 18 ? C B 147 . ? 1_555 ? 22 AC6 4 A A 32 ? A B 161 . ? 1_555 ? 23 AC6 4 G A 33 ? G B 162 . ? 1_555 ? 24 AC7 7 G A 2 ? G B 131 . ? 1_555 ? 25 AC7 7 G A 3 ? G B 132 . ? 1_555 ? 26 AC7 7 U A 4 ? U B 133 . ? 1_555 ? 27 AC7 7 G A 45 ? G B 174 . ? 1_555 ? 28 AC7 7 G A 46 ? G B 175 . ? 1_555 ? 29 AC7 7 U A 47 ? U B 176 . ? 1_555 ? 30 AC7 7 C A 48 ? C B 177 . ? 1_555 ? # _atom_sites.entry_id 2PXE _atom_sites.fract_transf_matrix[1][1] 0.007548 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000614 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013622 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030256 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 130 130 G G B . n A 1 2 G 2 131 131 G G B . n A 1 3 G 3 132 132 G G B . n A 1 4 U 4 133 133 U U B . n A 1 5 C 5 134 134 C C B . n A 1 6 U 6 135 135 U U B . n A 1 7 G 7 136 136 G G B . n A 1 8 U 8 137 137 U U B . n A 1 9 U 9 138 138 U U B . n A 1 10 U 10 139 139 U U B . n A 1 11 A 11 140 140 A A B . n A 1 12 C 12 141 141 C C B . n A 1 13 C 13 142 142 C C B . n A 1 14 A 14 143 143 A A B . n A 1 15 G 15 144 144 G G B . n A 1 16 G 16 145 145 G G B . n A 1 17 U 17 146 146 U U B . n A 1 18 C 18 147 147 C C B . n A 1 19 A 19 148 148 A A B . n A 1 20 G 20 149 149 G G B . n A 1 21 G 21 150 150 G G B . n A 1 22 U 22 151 151 U U B . n A 1 23 C 23 152 152 C C B . n A 1 24 C 24 153 153 C C B . n A 1 25 G 25 154 154 G G B . n A 1 26 A 26 155 155 A A B . n A 1 27 A 27 156 156 A A B . n A 1 28 A 28 157 157 A A B . n A 1 29 G 29 158 158 G G B . n A 1 30 G 30 159 159 G G B . n A 1 31 A 31 160 160 A A B . n A 1 32 A 32 161 161 A A B . n A 1 33 G 33 162 162 G G B . n A 1 34 C 34 163 163 C C B . n A 1 35 A 35 164 164 A A B . n A 1 36 G 36 165 165 G G B . n A 1 37 C 37 166 166 C C B . n A 1 38 C 38 167 167 C C B . n A 1 39 A 39 168 168 A A B . n A 1 40 A 40 169 169 A A B . n A 1 41 G 41 170 170 G G B . n A 1 42 G 42 171 171 G G B . n A 1 43 C 43 172 172 C C B . n A 1 44 A 44 173 173 A A B . n A 1 45 G 45 174 174 G G B . n A 1 46 G 46 175 175 G G B . n A 1 47 U 47 176 176 U U B . n A 1 48 C 48 177 177 C C B . n A 1 49 C 49 178 178 C C B . n B 2 1 PHE 1 1 1 PHE PHE A . n B 2 2 ASP 2 2 2 ASP ASP A . n B 2 3 LEU 3 3 3 LEU LEU A . n B 2 4 ASN 4 4 4 ASN ASN A . n B 2 5 ASP 5 5 5 ASP ASP A . n B 2 6 PHE 6 6 6 PHE PHE A . n B 2 7 LEU 7 7 7 LEU LEU A . n B 2 8 GLU 8 8 8 GLU GLU A . n B 2 9 GLN 9 9 9 GLN GLN A . n B 2 10 LEU 10 9 ? ? ? A A n B 2 11 ARG 11 9 ? ? ? A B n B 2 12 GLN 12 9 ? ? ? A C n B 2 13 MET 13 9 ? ? ? A D n B 2 14 LYS 14 9 ? ? ? A E n B 2 15 ASN 15 9 ? ? ? A F n B 2 16 MSE 16 9 ? ? ? A G n B 2 17 GLY 17 9 ? ? ? A H n B 2 18 GLY 18 9 ? ? ? A I n B 2 19 MSE 19 9 ? ? ? A J n B 2 20 ALA 20 9 ? ? ? A K n B 2 21 SER 21 9 ? ? ? A L n B 2 22 LEU 22 9 ? ? ? A M n B 2 23 MSE 23 9 ? ? ? A N n B 2 24 GLY 24 9 ? ? ? A O n B 2 25 LYS 25 9 ? ? ? A P n B 2 26 LEU 26 9 ? ? ? A Q n B 2 27 PRO 27 9 ? ? ? A R n B 2 28 GLY 28 9 ? ? ? A S n B 2 29 MSE 29 9 ? ? ? A T n B 2 30 GLY 30 9 ? ? ? A U n B 2 31 GLN 31 9 ? ? ? A V n B 2 32 ILE 32 9 ? ? ? A W n B 2 33 PRO 33 9 ? ? ? A X n B 2 34 ASP 34 9 ? ? ? A Y n B 2 35 ASN 35 9 ? ? ? A Z n B 2 36 VAL 36 10 ? ? ? A A n B 2 37 LYS 37 10 ? ? ? A B n B 2 38 SER 38 10 ? ? ? A C n B 2 39 GLN 39 10 ? ? ? A D n B 2 40 MSE 40 10 ? ? ? A E n B 2 41 ASP 41 10 ? ? ? A F n B 2 42 ASP 42 10 ? ? ? A G n B 2 43 LYS 43 23 23 LYS LYS A . n B 2 44 VAL 44 24 24 VAL VAL A . n B 2 45 LEU 45 25 25 LEU LEU A . n B 2 46 VAL 46 26 26 VAL VAL A . n B 2 47 ARG 47 27 27 ARG ARG A . n B 2 48 MSE 48 28 28 MSE MSE A . n B 2 49 GLU 49 29 29 GLU GLU A . n B 2 50 ALA 50 30 30 ALA ALA A . n B 2 51 ILE 51 31 31 ILE ILE A . n B 2 52 ILE 52 32 32 ILE ILE A . n B 2 53 ASN 53 33 33 ASN ASN A . n B 2 54 SER 54 34 34 SER SER A . n B 2 55 MSE 55 35 35 MSE MSE A . n B 2 56 THR 56 36 36 THR THR A . n B 2 57 MSE 57 37 37 MSE MSE A . n B 2 58 LYS 58 38 38 LYS LYS A . n B 2 59 GLU 59 39 39 GLU GLU A . n B 2 60 ARG 60 40 40 ARG ARG A . n B 2 61 ALA 61 41 41 ALA ALA A . n B 2 62 LYS 62 42 42 LYS LYS A . n B 2 63 PRO 63 43 43 PRO PRO A . n B 2 64 GLU 64 44 44 GLU GLU A . n B 2 65 ILE 65 45 45 ILE ILE A . n B 2 66 ILE 66 46 46 ILE ILE A . n B 2 67 LYS 67 47 47 LYS LYS A . n B 2 68 GLY 68 48 48 GLY GLY A . n B 2 69 SER 69 49 49 SER SER A . n B 2 70 ARG 70 50 50 ARG ARG A . n B 2 71 LYS 71 51 51 LYS LYS A . n B 2 72 ARG 72 52 52 ARG ARG A . n B 2 73 ARG 73 53 53 ARG ARG A . n B 2 74 ILE 74 54 54 ILE ILE A . n B 2 75 ALA 75 55 55 ALA ALA A . n B 2 76 ALA 76 56 56 ALA ALA A . n B 2 77 GLY 77 57 57 GLY GLY A . n B 2 78 SER 78 58 58 SER SER A . n B 2 79 GLY 79 59 59 GLY GLY A . n B 2 80 MSE 80 60 60 MSE MSE A . n B 2 81 GLN 81 61 61 GLN GLN A . n B 2 82 VAL 82 62 62 VAL VAL A . n B 2 83 GLN 83 63 63 GLN GLN A . n B 2 84 ASP 84 64 64 ASP ASP A . n B 2 85 VAL 85 65 65 VAL VAL A . n B 2 86 ASN 86 66 66 ASN ASN A . n B 2 87 ARG 87 67 67 ARG ARG A . n B 2 88 LEU 88 68 68 LEU LEU A . n B 2 89 LEU 89 69 69 LEU LEU A . n B 2 90 LYS 90 70 70 LYS LYS A . n B 2 91 GLN 91 71 71 GLN GLN A . n B 2 92 PHE 92 72 72 PHE PHE A . n B 2 93 ASP 93 73 73 ASP ASP A . n B 2 94 ASP 94 74 74 ASP ASP A . n B 2 95 MSE 95 75 75 MSE MSE A . n B 2 96 GLN 96 76 76 GLN GLN A . n B 2 97 ARG 97 77 77 ARG ARG A . n B 2 98 MSE 98 78 78 MSE MSE A . n B 2 99 MSE 99 79 79 MSE MSE A . n B 2 100 LYS 100 80 80 LYS LYS A . n B 2 101 LYS 101 81 81 LYS LYS A . n B 2 102 MSE 102 82 82 MSE MSE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NCO 1 201 201 NCO NCO B . D 3 NCO 1 202 202 NCO NCO B . E 3 NCO 1 203 203 NCO NCO B . F 3 NCO 1 204 204 NCO NCO B . G 3 NCO 1 205 205 NCO NCO B . H 3 NCO 1 206 206 NCO NCO B . I 3 NCO 1 207 207 NCO NCO B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B MSE 48 A MSE 28 ? MET SELENOMETHIONINE 2 B MSE 55 A MSE 35 ? MET SELENOMETHIONINE 3 B MSE 57 A MSE 37 ? MET SELENOMETHIONINE 4 B MSE 80 A MSE 60 ? MET SELENOMETHIONINE 5 B MSE 95 A MSE 75 ? MET SELENOMETHIONINE 6 B MSE 98 A MSE 78 ? MET SELENOMETHIONINE 7 B MSE 99 A MSE 79 ? MET SELENOMETHIONINE 8 B MSE 102 A MSE 82 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-08-30 5 'Structure model' 1 4 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 8 5 'Structure model' '_chem_comp_atom.atom_id' 9 5 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_phasing_MR.entry_id 2PXE _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation general _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.720 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation 2.150 _pdbx_phasing_MR.d_res_low_translation 40.000 _pdbx_phasing_MR.packing 0.290 _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation 97.200 _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation 0.000 _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 9.4L 'Feb 10 2005' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data scaling' http://www.msc.com/protein/dtrek.html ? ? 1 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 2 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 CrystalClear . ? ? ? ? 'data collection' ? ? ? 4 d*TREK . ? ? ? ? 'data reduction' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 47 ? ? -115.37 -162.21 2 1 MSE A 79 ? ? -62.60 97.41 3 1 LYS A 80 ? ? 129.75 -29.43 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 154 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.061 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 23 ? CG ? B LYS 43 CG 2 1 Y 1 A LYS 23 ? CD ? B LYS 43 CD 3 1 Y 1 A LYS 23 ? CE ? B LYS 43 CE 4 1 Y 1 A LYS 23 ? NZ ? B LYS 43 NZ 5 1 Y 1 A VAL 24 ? CG1 ? B VAL 44 CG1 6 1 Y 1 A VAL 24 ? CG2 ? B VAL 44 CG2 7 1 Y 1 A LEU 25 ? CG ? B LEU 45 CG 8 1 Y 1 A LEU 25 ? CD1 ? B LEU 45 CD1 9 1 Y 1 A LEU 25 ? CD2 ? B LEU 45 CD2 10 1 Y 1 A VAL 26 ? CG1 ? B VAL 46 CG1 11 1 Y 1 A VAL 26 ? CG2 ? B VAL 46 CG2 12 1 Y 1 A ARG 27 ? CG ? B ARG 47 CG 13 1 Y 1 A ARG 27 ? CD ? B ARG 47 CD 14 1 Y 1 A ARG 27 ? NE ? B ARG 47 NE 15 1 Y 1 A ARG 27 ? CZ ? B ARG 47 CZ 16 1 Y 1 A ARG 27 ? NH1 ? B ARG 47 NH1 17 1 Y 1 A ARG 27 ? NH2 ? B ARG 47 NH2 18 1 Y 1 A ARG 67 ? CG ? B ARG 87 CG 19 1 Y 1 A ARG 67 ? CD ? B ARG 87 CD 20 1 Y 1 A ARG 67 ? NE ? B ARG 87 NE 21 1 Y 1 A ARG 67 ? CZ ? B ARG 87 CZ 22 1 Y 1 A ARG 67 ? NH1 ? B ARG 87 NH1 23 1 Y 1 A ARG 67 ? NH2 ? B ARG 87 NH2 24 1 Y 1 A GLN 76 ? CG ? B GLN 96 CG 25 1 Y 1 A GLN 76 ? CD ? B GLN 96 CD 26 1 Y 1 A GLN 76 ? OE1 ? B GLN 96 OE1 27 1 Y 1 A GLN 76 ? NE2 ? B GLN 96 NE2 28 1 Y 1 A LYS 80 ? CG ? B LYS 100 CG 29 1 Y 1 A LYS 80 ? CD ? B LYS 100 CD 30 1 Y 1 A LYS 80 ? CE ? B LYS 100 CE 31 1 Y 1 A LYS 80 ? NZ ? B LYS 100 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 9 A B LEU 10 2 1 Y 1 A ARG 9 B B ARG 11 3 1 Y 1 A GLN 9 C B GLN 12 4 1 Y 1 A MET 9 D B MET 13 5 1 Y 1 A LYS 9 E B LYS 14 6 1 Y 1 A ASN 9 F B ASN 15 7 1 Y 1 A MSE 9 G B MSE 16 8 1 Y 1 A GLY 9 H B GLY 17 9 1 Y 1 A GLY 9 I B GLY 18 10 1 Y 1 A MSE 9 J B MSE 19 11 1 Y 1 A ALA 9 K B ALA 20 12 1 Y 1 A SER 9 L B SER 21 13 1 Y 1 A LEU 9 M B LEU 22 14 1 Y 1 A MSE 9 N B MSE 23 15 1 Y 1 A GLY 9 O B GLY 24 16 1 Y 1 A LYS 9 P B LYS 25 17 1 Y 1 A LEU 9 Q B LEU 26 18 1 Y 1 A PRO 9 R B PRO 27 19 1 Y 1 A GLY 9 S B GLY 28 20 1 Y 1 A MSE 9 T B MSE 29 21 1 Y 1 A GLY 9 U B GLY 30 22 1 Y 1 A GLN 9 V B GLN 31 23 1 Y 1 A ILE 9 W B ILE 32 24 1 Y 1 A PRO 9 X B PRO 33 25 1 Y 1 A ASP 9 Y B ASP 34 26 1 Y 1 A ASN 9 Z B ASN 35 27 1 Y 1 A VAL 10 A B VAL 36 28 1 Y 1 A LYS 10 B B LYS 37 29 1 Y 1 A SER 10 C B SER 38 30 1 Y 1 A GLN 10 D B GLN 39 31 1 Y 1 A MSE 10 E B MSE 40 32 1 Y 1 A ASP 10 F B ASP 41 33 1 Y 1 A ASP 10 G B ASP 42 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 ILE N N N N 247 ILE CA C N S 248 ILE C C N N 249 ILE O O N N 250 ILE CB C N S 251 ILE CG1 C N N 252 ILE CG2 C N N 253 ILE CD1 C N N 254 ILE OXT O N N 255 ILE H H N N 256 ILE H2 H N N 257 ILE HA H N N 258 ILE HB H N N 259 ILE HG12 H N N 260 ILE HG13 H N N 261 ILE HG21 H N N 262 ILE HG22 H N N 263 ILE HG23 H N N 264 ILE HD11 H N N 265 ILE HD12 H N N 266 ILE HD13 H N N 267 ILE HXT H N N 268 LEU N N N N 269 LEU CA C N S 270 LEU C C N N 271 LEU O O N N 272 LEU CB C N N 273 LEU CG C N N 274 LEU CD1 C N N 275 LEU CD2 C N N 276 LEU OXT O N N 277 LEU H H N N 278 LEU H2 H N N 279 LEU HA H N N 280 LEU HB2 H N N 281 LEU HB3 H N N 282 LEU HG H N N 283 LEU HD11 H N N 284 LEU HD12 H N N 285 LEU HD13 H N N 286 LEU HD21 H N N 287 LEU HD22 H N N 288 LEU HD23 H N N 289 LEU HXT H N N 290 LYS N N N N 291 LYS CA C N S 292 LYS C C N N 293 LYS O O N N 294 LYS CB C N N 295 LYS CG C N N 296 LYS CD C N N 297 LYS CE C N N 298 LYS NZ N N N 299 LYS OXT O N N 300 LYS H H N N 301 LYS H2 H N N 302 LYS HA H N N 303 LYS HB2 H N N 304 LYS HB3 H N N 305 LYS HG2 H N N 306 LYS HG3 H N N 307 LYS HD2 H N N 308 LYS HD3 H N N 309 LYS HE2 H N N 310 LYS HE3 H N N 311 LYS HZ1 H N N 312 LYS HZ2 H N N 313 LYS HZ3 H N N 314 LYS HXT H N N 315 MET N N N N 316 MET CA C N S 317 MET C C N N 318 MET O O N N 319 MET CB C N N 320 MET CG C N N 321 MET SD S N N 322 MET CE C N N 323 MET OXT O N N 324 MET H H N N 325 MET H2 H N N 326 MET HA H N N 327 MET HB2 H N N 328 MET HB3 H N N 329 MET HG2 H N N 330 MET HG3 H N N 331 MET HE1 H N N 332 MET HE2 H N N 333 MET HE3 H N N 334 MET HXT H N N 335 MSE N N N N 336 MSE CA C N S 337 MSE C C N N 338 MSE O O N N 339 MSE OXT O N N 340 MSE CB C N N 341 MSE CG C N N 342 MSE SE SE N N 343 MSE CE C N N 344 MSE H H N N 345 MSE H2 H N N 346 MSE HA H N N 347 MSE HXT H N N 348 MSE HB2 H N N 349 MSE HB3 H N N 350 MSE HG2 H N N 351 MSE HG3 H N N 352 MSE HE1 H N N 353 MSE HE2 H N N 354 MSE HE3 H N N 355 NCO CO CO N N 356 NCO N1 N N N 357 NCO N2 N N N 358 NCO N3 N N N 359 NCO N4 N N N 360 NCO N5 N N N 361 NCO N6 N N N 362 NCO HN11 H N N 363 NCO HN12 H N N 364 NCO HN13 H N N 365 NCO HN21 H N N 366 NCO HN22 H N N 367 NCO HN23 H N N 368 NCO HN31 H N N 369 NCO HN32 H N N 370 NCO HN33 H N N 371 NCO HN41 H N N 372 NCO HN42 H N N 373 NCO HN43 H N N 374 NCO HN51 H N N 375 NCO HN52 H N N 376 NCO HN53 H N N 377 NCO HN61 H N N 378 NCO HN62 H N N 379 NCO HN63 H N N 380 PHE N N N N 381 PHE CA C N S 382 PHE C C N N 383 PHE O O N N 384 PHE CB C N N 385 PHE CG C Y N 386 PHE CD1 C Y N 387 PHE CD2 C Y N 388 PHE CE1 C Y N 389 PHE CE2 C Y N 390 PHE CZ C Y N 391 PHE OXT O N N 392 PHE H H N N 393 PHE H2 H N N 394 PHE HA H N N 395 PHE HB2 H N N 396 PHE HB3 H N N 397 PHE HD1 H N N 398 PHE HD2 H N N 399 PHE HE1 H N N 400 PHE HE2 H N N 401 PHE HZ H N N 402 PHE HXT H N N 403 PRO N N N N 404 PRO CA C N S 405 PRO C C N N 406 PRO O O N N 407 PRO CB C N N 408 PRO CG C N N 409 PRO CD C N N 410 PRO OXT O N N 411 PRO H H N N 412 PRO HA H N N 413 PRO HB2 H N N 414 PRO HB3 H N N 415 PRO HG2 H N N 416 PRO HG3 H N N 417 PRO HD2 H N N 418 PRO HD3 H N N 419 PRO HXT H N N 420 SER N N N N 421 SER CA C N S 422 SER C C N N 423 SER O O N N 424 SER CB C N N 425 SER OG O N N 426 SER OXT O N N 427 SER H H N N 428 SER H2 H N N 429 SER HA H N N 430 SER HB2 H N N 431 SER HB3 H N N 432 SER HG H N N 433 SER HXT H N N 434 THR N N N N 435 THR CA C N S 436 THR C C N N 437 THR O O N N 438 THR CB C N R 439 THR OG1 O N N 440 THR CG2 C N N 441 THR OXT O N N 442 THR H H N N 443 THR H2 H N N 444 THR HA H N N 445 THR HB H N N 446 THR HG1 H N N 447 THR HG21 H N N 448 THR HG22 H N N 449 THR HG23 H N N 450 THR HXT H N N 451 U OP3 O N N 452 U P P N N 453 U OP1 O N N 454 U OP2 O N N 455 U "O5'" O N N 456 U "C5'" C N N 457 U "C4'" C N R 458 U "O4'" O N N 459 U "C3'" C N S 460 U "O3'" O N N 461 U "C2'" C N R 462 U "O2'" O N N 463 U "C1'" C N R 464 U N1 N N N 465 U C2 C N N 466 U O2 O N N 467 U N3 N N N 468 U C4 C N N 469 U O4 O N N 470 U C5 C N N 471 U C6 C N N 472 U HOP3 H N N 473 U HOP2 H N N 474 U "H5'" H N N 475 U "H5''" H N N 476 U "H4'" H N N 477 U "H3'" H N N 478 U "HO3'" H N N 479 U "H2'" H N N 480 U "HO2'" H N N 481 U "H1'" H N N 482 U H3 H N N 483 U H5 H N N 484 U H6 H N N 485 VAL N N N N 486 VAL CA C N S 487 VAL C C N N 488 VAL O O N N 489 VAL CB C N N 490 VAL CG1 C N N 491 VAL CG2 C N N 492 VAL OXT O N N 493 VAL H H N N 494 VAL H2 H N N 495 VAL HA H N N 496 VAL HB H N N 497 VAL HG11 H N N 498 VAL HG12 H N N 499 VAL HG13 H N N 500 VAL HG21 H N N 501 VAL HG22 H N N 502 VAL HG23 H N N 503 VAL HXT H N N 504 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 ILE N CA sing N N 244 ILE N H sing N N 245 ILE N H2 sing N N 246 ILE CA C sing N N 247 ILE CA CB sing N N 248 ILE CA HA sing N N 249 ILE C O doub N N 250 ILE C OXT sing N N 251 ILE CB CG1 sing N N 252 ILE CB CG2 sing N N 253 ILE CB HB sing N N 254 ILE CG1 CD1 sing N N 255 ILE CG1 HG12 sing N N 256 ILE CG1 HG13 sing N N 257 ILE CG2 HG21 sing N N 258 ILE CG2 HG22 sing N N 259 ILE CG2 HG23 sing N N 260 ILE CD1 HD11 sing N N 261 ILE CD1 HD12 sing N N 262 ILE CD1 HD13 sing N N 263 ILE OXT HXT sing N N 264 LEU N CA sing N N 265 LEU N H sing N N 266 LEU N H2 sing N N 267 LEU CA C sing N N 268 LEU CA CB sing N N 269 LEU CA HA sing N N 270 LEU C O doub N N 271 LEU C OXT sing N N 272 LEU CB CG sing N N 273 LEU CB HB2 sing N N 274 LEU CB HB3 sing N N 275 LEU CG CD1 sing N N 276 LEU CG CD2 sing N N 277 LEU CG HG sing N N 278 LEU CD1 HD11 sing N N 279 LEU CD1 HD12 sing N N 280 LEU CD1 HD13 sing N N 281 LEU CD2 HD21 sing N N 282 LEU CD2 HD22 sing N N 283 LEU CD2 HD23 sing N N 284 LEU OXT HXT sing N N 285 LYS N CA sing N N 286 LYS N H sing N N 287 LYS N H2 sing N N 288 LYS CA C sing N N 289 LYS CA CB sing N N 290 LYS CA HA sing N N 291 LYS C O doub N N 292 LYS C OXT sing N N 293 LYS CB CG sing N N 294 LYS CB HB2 sing N N 295 LYS CB HB3 sing N N 296 LYS CG CD sing N N 297 LYS CG HG2 sing N N 298 LYS CG HG3 sing N N 299 LYS CD CE sing N N 300 LYS CD HD2 sing N N 301 LYS CD HD3 sing N N 302 LYS CE NZ sing N N 303 LYS CE HE2 sing N N 304 LYS CE HE3 sing N N 305 LYS NZ HZ1 sing N N 306 LYS NZ HZ2 sing N N 307 LYS NZ HZ3 sing N N 308 LYS OXT HXT sing N N 309 MET N CA sing N N 310 MET N H sing N N 311 MET N H2 sing N N 312 MET CA C sing N N 313 MET CA CB sing N N 314 MET CA HA sing N N 315 MET C O doub N N 316 MET C OXT sing N N 317 MET CB CG sing N N 318 MET CB HB2 sing N N 319 MET CB HB3 sing N N 320 MET CG SD sing N N 321 MET CG HG2 sing N N 322 MET CG HG3 sing N N 323 MET SD CE sing N N 324 MET CE HE1 sing N N 325 MET CE HE2 sing N N 326 MET CE HE3 sing N N 327 MET OXT HXT sing N N 328 MSE N CA sing N N 329 MSE N H sing N N 330 MSE N H2 sing N N 331 MSE CA C sing N N 332 MSE CA CB sing N N 333 MSE CA HA sing N N 334 MSE C O doub N N 335 MSE C OXT sing N N 336 MSE OXT HXT sing N N 337 MSE CB CG sing N N 338 MSE CB HB2 sing N N 339 MSE CB HB3 sing N N 340 MSE CG SE sing N N 341 MSE CG HG2 sing N N 342 MSE CG HG3 sing N N 343 MSE SE CE sing N N 344 MSE CE HE1 sing N N 345 MSE CE HE2 sing N N 346 MSE CE HE3 sing N N 347 NCO CO N1 sing N N 348 NCO CO N2 sing N N 349 NCO CO N3 sing N N 350 NCO CO N4 sing N N 351 NCO CO N5 sing N N 352 NCO CO N6 sing N N 353 NCO N1 HN11 sing N N 354 NCO N1 HN12 sing N N 355 NCO N1 HN13 sing N N 356 NCO N2 HN21 sing N N 357 NCO N2 HN22 sing N N 358 NCO N2 HN23 sing N N 359 NCO N3 HN31 sing N N 360 NCO N3 HN32 sing N N 361 NCO N3 HN33 sing N N 362 NCO N4 HN41 sing N N 363 NCO N4 HN42 sing N N 364 NCO N4 HN43 sing N N 365 NCO N5 HN51 sing N N 366 NCO N5 HN52 sing N N 367 NCO N5 HN53 sing N N 368 NCO N6 HN61 sing N N 369 NCO N6 HN62 sing N N 370 NCO N6 HN63 sing N N 371 PHE N CA sing N N 372 PHE N H sing N N 373 PHE N H2 sing N N 374 PHE CA C sing N N 375 PHE CA CB sing N N 376 PHE CA HA sing N N 377 PHE C O doub N N 378 PHE C OXT sing N N 379 PHE CB CG sing N N 380 PHE CB HB2 sing N N 381 PHE CB HB3 sing N N 382 PHE CG CD1 doub Y N 383 PHE CG CD2 sing Y N 384 PHE CD1 CE1 sing Y N 385 PHE CD1 HD1 sing N N 386 PHE CD2 CE2 doub Y N 387 PHE CD2 HD2 sing N N 388 PHE CE1 CZ doub Y N 389 PHE CE1 HE1 sing N N 390 PHE CE2 CZ sing Y N 391 PHE CE2 HE2 sing N N 392 PHE CZ HZ sing N N 393 PHE OXT HXT sing N N 394 PRO N CA sing N N 395 PRO N CD sing N N 396 PRO N H sing N N 397 PRO CA C sing N N 398 PRO CA CB sing N N 399 PRO CA HA sing N N 400 PRO C O doub N N 401 PRO C OXT sing N N 402 PRO CB CG sing N N 403 PRO CB HB2 sing N N 404 PRO CB HB3 sing N N 405 PRO CG CD sing N N 406 PRO CG HG2 sing N N 407 PRO CG HG3 sing N N 408 PRO CD HD2 sing N N 409 PRO CD HD3 sing N N 410 PRO OXT HXT sing N N 411 SER N CA sing N N 412 SER N H sing N N 413 SER N H2 sing N N 414 SER CA C sing N N 415 SER CA CB sing N N 416 SER CA HA sing N N 417 SER C O doub N N 418 SER C OXT sing N N 419 SER CB OG sing N N 420 SER CB HB2 sing N N 421 SER CB HB3 sing N N 422 SER OG HG sing N N 423 SER OXT HXT sing N N 424 THR N CA sing N N 425 THR N H sing N N 426 THR N H2 sing N N 427 THR CA C sing N N 428 THR CA CB sing N N 429 THR CA HA sing N N 430 THR C O doub N N 431 THR C OXT sing N N 432 THR CB OG1 sing N N 433 THR CB CG2 sing N N 434 THR CB HB sing N N 435 THR OG1 HG1 sing N N 436 THR CG2 HG21 sing N N 437 THR CG2 HG22 sing N N 438 THR CG2 HG23 sing N N 439 THR OXT HXT sing N N 440 U OP3 P sing N N 441 U OP3 HOP3 sing N N 442 U P OP1 doub N N 443 U P OP2 sing N N 444 U P "O5'" sing N N 445 U OP2 HOP2 sing N N 446 U "O5'" "C5'" sing N N 447 U "C5'" "C4'" sing N N 448 U "C5'" "H5'" sing N N 449 U "C5'" "H5''" sing N N 450 U "C4'" "O4'" sing N N 451 U "C4'" "C3'" sing N N 452 U "C4'" "H4'" sing N N 453 U "O4'" "C1'" sing N N 454 U "C3'" "O3'" sing N N 455 U "C3'" "C2'" sing N N 456 U "C3'" "H3'" sing N N 457 U "O3'" "HO3'" sing N N 458 U "C2'" "O2'" sing N N 459 U "C2'" "C1'" sing N N 460 U "C2'" "H2'" sing N N 461 U "O2'" "HO2'" sing N N 462 U "C1'" N1 sing N N 463 U "C1'" "H1'" sing N N 464 U N1 C2 sing N N 465 U N1 C6 sing N N 466 U C2 O2 doub N N 467 U C2 N3 sing N N 468 U N3 C4 sing N N 469 U N3 H3 sing N N 470 U C4 O4 doub N N 471 U C4 C5 sing N N 472 U C5 C6 doub N N 473 U C5 H5 sing N N 474 U C6 H6 sing N N 475 VAL N CA sing N N 476 VAL N H sing N N 477 VAL N H2 sing N N 478 VAL CA C sing N N 479 VAL CA CB sing N N 480 VAL CA HA sing N N 481 VAL C O doub N N 482 VAL C OXT sing N N 483 VAL CB CG1 sing N N 484 VAL CB CG2 sing N N 485 VAL CB HB sing N N 486 VAL CG1 HG11 sing N N 487 VAL CG1 HG12 sing N N 488 VAL CG1 HG13 sing N N 489 VAL CG2 HG21 sing N N 490 VAL CG2 HG22 sing N N 491 VAL CG2 HG23 sing N N 492 VAL OXT HXT sing N N 493 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2PXE 'double helix' 2PXE 'a-form double helix' 2PXE tetraloop 2PXE 'mismatched base pair' 2PXE 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 49 1_555 0.430 -0.146 -0.291 -5.131 -9.877 0.425 1 B_G130:C178_B B 130 ? B 178 ? 19 1 1 A G 2 1_555 A C 48 1_555 -0.515 -0.365 0.226 -2.105 -15.379 0.819 2 B_G131:C177_B B 131 ? B 177 ? 19 1 1 A G 3 1_555 A U 47 1_555 -2.143 -0.424 -0.122 -3.435 -9.325 0.222 3 B_G132:U176_B B 132 ? B 176 ? 28 1 1 A U 4 1_555 A G 46 1_555 2.143 -0.737 0.106 -0.618 -5.574 1.018 4 B_U133:G175_B B 133 ? B 175 ? 28 1 1 A C 5 1_555 A G 45 1_555 0.097 -0.411 -0.083 -0.677 -12.720 0.600 5 B_C134:G174_B B 134 ? B 174 ? 19 1 1 A U 6 1_555 A A 44 1_555 0.079 -0.272 0.054 0.944 -7.167 -3.760 6 B_U135:A173_B B 135 ? B 173 ? 20 1 1 A G 7 1_555 A C 43 1_555 -0.465 -0.158 0.099 3.212 -13.783 -2.689 7 B_G136:C172_B B 136 ? B 172 ? 19 1 1 A U 8 1_555 A G 42 1_555 2.373 -0.737 0.163 4.614 -9.977 -0.852 8 B_U137:G171_B B 137 ? B 171 ? 28 1 1 A U 9 1_555 A G 41 1_555 2.029 -0.717 0.041 -2.104 -19.792 -0.024 9 B_U138:G170_B B 138 ? B 170 ? 28 1 1 A U 10 1_555 A A 40 1_555 0.216 -0.270 0.198 -1.736 -3.990 -3.279 10 B_U139:A169_B B 139 ? B 169 ? 20 1 1 A G 15 1_555 A C 38 1_555 -0.050 -0.171 0.039 -9.958 -12.585 -0.629 11 B_G144:C167_B B 144 ? B 167 ? 19 1 1 A G 16 1_555 A C 37 1_555 -0.409 -0.179 -0.136 -17.046 -13.163 0.035 12 B_G145:C166_B B 145 ? B 166 ? 19 1 1 A U 17 1_555 A G 36 1_555 2.402 -0.842 0.151 -5.492 -7.439 -8.549 13 B_U146:G165_B B 146 ? B 165 ? 28 ? 1 A C 18 1_555 A A 35 1_555 6.445 -3.879 -0.148 -3.997 -14.104 -27.483 14 B_C147:A164_B B 147 ? B 164 ? ? 6 1 A A 19 1_555 A C 34 1_555 -3.059 -0.613 -0.712 -4.626 -17.631 -92.640 15 B_A148:C163_B B 148 ? B 163 ? 25 4 1 A G 20 1_555 A G 33 1_555 -6.943 -1.993 0.434 4.936 -7.271 -18.417 16 B_G149:G162_B B 149 ? B 162 ? ? ? 1 A G 21 1_555 A A 32 1_555 -0.155 1.361 -0.443 8.116 -11.622 -16.897 17 B_G150:A161_B B 150 ? B 161 ? 8 ? 1 A U 22 1_555 A A 31 1_555 -0.189 -0.036 -0.113 12.940 -3.991 -7.319 18 B_U151:A160_B B 151 ? B 160 ? 20 1 1 A C 23 1_555 A G 30 1_555 0.159 -0.453 -0.210 8.509 -10.072 1.454 19 B_C152:G159_B B 152 ? B 159 ? 19 1 1 A C 24 1_555 A G 29 1_555 -0.147 -0.305 -0.380 4.900 -0.047 1.534 20 B_C153:G158_B B 153 ? B 158 ? 19 1 1 A G 25 1_555 A A 28 1_555 6.890 -4.769 0.890 8.555 -7.966 -12.399 21 B_G154:A157_B B 154 ? B 157 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 49 1_555 A G 2 1_555 A C 48 1_555 0.157 -1.186 2.892 -5.558 9.205 34.372 -3.019 -0.917 2.450 15.125 9.132 35.966 1 BB_G130G131:C177C178_BB B 130 ? B 178 ? B 131 ? B 177 ? 1 A G 2 1_555 A C 48 1_555 A G 3 1_555 A U 47 1_555 -0.316 -2.074 3.005 -2.423 13.529 26.474 -6.233 0.221 1.778 27.325 4.894 29.772 2 BB_G131G132:U176C177_BB B 131 ? B 177 ? B 132 ? B 176 ? 1 A G 3 1_555 A U 47 1_555 A U 4 1_555 A G 46 1_555 0.148 -1.096 3.190 -1.425 6.709 47.181 -1.869 -0.292 3.011 8.330 1.770 47.649 3 BB_G132U133:G175U176_BB B 132 ? B 176 ? B 133 ? B 175 ? 1 A U 4 1_555 A G 46 1_555 A C 5 1_555 A G 45 1_555 -0.164 -2.178 2.934 3.626 10.370 24.820 -6.651 1.050 1.849 22.755 -7.956 27.108 4 BB_U133C134:G174G175_BB B 133 ? B 175 ? B 134 ? B 174 ? 1 A C 5 1_555 A G 45 1_555 A U 6 1_555 A A 44 1_555 -0.066 -1.554 3.176 -0.923 6.809 32.994 -3.707 -0.025 2.810 11.829 1.604 33.682 5 BB_C134U135:A173G174_BB B 134 ? B 174 ? B 135 ? B 173 ? 1 A U 6 1_555 A A 44 1_555 A G 7 1_555 A C 43 1_555 -0.388 -1.786 3.080 0.333 9.526 24.256 -6.160 0.938 2.224 21.632 -0.755 26.036 6 BB_U135G136:C172A173_BB B 135 ? B 173 ? B 136 ? B 172 ? 1 A G 7 1_555 A C 43 1_555 A U 8 1_555 A G 42 1_555 0.589 -1.385 3.264 -0.480 5.686 43.762 -2.362 -0.828 3.063 7.590 0.641 44.114 7 BB_G136U137:G171C172_BB B 136 ? B 172 ? B 137 ? B 171 ? 1 A U 8 1_555 A G 42 1_555 A U 9 1_555 A G 41 1_555 -0.192 -1.980 3.074 8.220 9.571 35.040 -4.201 1.241 2.369 15.297 -13.137 37.175 8 BB_U137U138:G170G171_BB B 137 ? B 171 ? B 138 ? B 170 ? 1 A U 9 1_555 A G 41 1_555 A U 10 1_555 A A 40 1_555 -0.278 -1.278 3.249 0.570 9.487 26.350 -4.728 0.701 2.632 20.002 -1.203 27.983 9 BB_U138U139:A169G170_BB B 138 ? B 170 ? B 139 ? B 169 ? 1 A G 15 1_555 A C 38 1_555 A G 16 1_555 A C 37 1_555 -0.774 -1.861 3.273 1.924 8.092 32.429 -4.473 1.640 2.695 14.200 -3.376 33.451 10 BB_G144G145:C166C167_BB B 144 ? B 167 ? B 145 ? B 166 ? 1 A G 16 1_555 A C 37 1_555 A U 17 1_555 A G 36 1_555 -0.379 -0.765 2.902 -1.307 8.197 41.813 -1.771 0.407 2.722 11.351 1.809 42.592 11 BB_G145U146:G165C166_BB B 145 ? B 166 ? B 146 ? B 165 ? 1 A U 17 1_555 A G 36 1_555 A C 18 1_555 A A 35 1_555 0.648 -2.049 3.455 2.520 -1.333 41.167 -2.753 -0.628 3.549 -1.893 -3.578 41.261 12 BB_U146C147:A164G165_BB B 146 ? B 165 ? B 147 ? B 164 ? 1 A C 18 1_555 A A 35 1_555 A A 19 1_555 A C 34 1_555 -4.554 -0.317 3.075 -1.330 14.872 10.092 -9.233 13.816 1.802 55.906 5.001 18.006 13 BB_C147A148:C163A164_BB B 147 ? B 164 ? B 148 ? B 163 ? 1 A A 19 1_555 A C 34 1_555 A G 20 1_555 A G 33 1_555 5.154 -1.219 2.944 -0.859 5.532 27.338 -3.636 -10.863 2.494 11.552 1.793 27.895 14 BB_A148G149:G162C163_BB B 148 ? B 163 ? B 149 ? B 162 ? 1 A G 20 1_555 A G 33 1_555 A G 21 1_555 A A 32 1_555 -0.164 -1.642 3.379 0.280 8.014 52.404 -2.355 0.202 3.114 9.015 -0.315 52.971 15 BB_G149G150:A161G162_BB B 149 ? B 162 ? B 150 ? B 161 ? 1 A G 21 1_555 A A 32 1_555 A U 22 1_555 A A 31 1_555 0.804 -2.346 3.250 -5.273 -1.458 24.947 -4.897 -3.307 3.146 -3.324 12.023 25.530 16 BB_G150U151:A160A161_BB B 150 ? B 161 ? B 151 ? B 160 ? 1 A U 22 1_555 A A 31 1_555 A C 23 1_555 A G 30 1_555 0.107 -1.873 3.387 -2.380 3.883 34.428 -3.735 -0.545 3.149 6.525 4.000 34.719 17 BB_U151C152:G159A160_BB B 151 ? B 160 ? B 152 ? B 159 ? 1 A C 23 1_555 A G 30 1_555 A C 24 1_555 A G 29 1_555 -0.167 -2.197 3.389 -0.724 5.780 31.162 -5.064 0.176 2.947 10.643 1.332 31.688 18 BB_C152C153:G158G159_BB B 152 ? B 159 ? B 153 ? B 158 ? 1 A C 24 1_555 A G 29 1_555 A G 25 1_555 A A 28 1_555 -2.526 -1.072 3.200 -4.858 9.946 45.792 -2.149 2.771 3.152 12.566 6.139 47.040 19 BB_C153G154:A157G158_BB B 153 ? B 158 ? B 154 ? B 157 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'COBALT HEXAMMINE(III)' _pdbx_entity_nonpoly.comp_id NCO # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DUL _pdbx_initial_refinement_model.details 'PDB 1DUL' #