data_2QFF # _entry.id 2QFF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QFF RCSB RCSB043530 WWPDB D_1000043530 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QFF _pdbx_database_status.recvd_initial_deposition_date 2007-06-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Milder, F.J.' 1 'Rooijakkers, S.H.M.' 2 'Bardoel, B.W.' 3 'Ruyken, M.' 4 'Van Strijp, J.A.G.' 5 'Gros, P.' 6 # _citation.id primary _citation.title 'Staphylococcal complement inhibitor: structure and active sites.' _citation.journal_abbrev J.Immunol. _citation.journal_volume 179 _citation.page_first 2989 _citation.page_last 2998 _citation.year 2007 _citation.journal_id_ASTM JOIMA3 _citation.country US _citation.journal_id_ISSN 0022-1767 _citation.journal_id_CSD 0952 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17709514 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rooijakkers, S.H.' 1 primary 'Milder, F.J.' 2 primary 'Bardoel, B.W.' 3 primary 'Ruyken, M.' 4 primary 'van Strijp, J.A.' 5 primary 'Gros, P.' 6 # _cell.entry_id 2QFF _cell.length_a 23.017 _cell.length_b 42.775 _cell.length_c 63.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QFF _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein' 9533.494 1 ? ? ? ? 2 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;STSLPTSNEYQNEKLANELKSLLDELNVNELATGSLNTYYKRTIKISGQKA(MSE)YALKSKDFKK(MSE)SEAKYQLQK IYNEIDEALK ; _entity_poly.pdbx_seq_one_letter_code_can ;STSLPTSNEYQNEKLANELKSLLDELNVNELATGSLNTYYKRTIKISGQKAMYALKSKDFKKMSEAKYQLQKIYNEIDEA LK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 SER n 1 4 LEU n 1 5 PRO n 1 6 THR n 1 7 SER n 1 8 ASN n 1 9 GLU n 1 10 TYR n 1 11 GLN n 1 12 ASN n 1 13 GLU n 1 14 LYS n 1 15 LEU n 1 16 ALA n 1 17 ASN n 1 18 GLU n 1 19 LEU n 1 20 LYS n 1 21 SER n 1 22 LEU n 1 23 LEU n 1 24 ASP n 1 25 GLU n 1 26 LEU n 1 27 ASN n 1 28 VAL n 1 29 ASN n 1 30 GLU n 1 31 LEU n 1 32 ALA n 1 33 THR n 1 34 GLY n 1 35 SER n 1 36 LEU n 1 37 ASN n 1 38 THR n 1 39 TYR n 1 40 TYR n 1 41 LYS n 1 42 ARG n 1 43 THR n 1 44 ILE n 1 45 LYS n 1 46 ILE n 1 47 SER n 1 48 GLY n 1 49 GLN n 1 50 LYS n 1 51 ALA n 1 52 MSE n 1 53 TYR n 1 54 ALA n 1 55 LEU n 1 56 LYS n 1 57 SER n 1 58 LYS n 1 59 ASP n 1 60 PHE n 1 61 LYS n 1 62 LYS n 1 63 MSE n 1 64 SER n 1 65 GLU n 1 66 ALA n 1 67 LYS n 1 68 TYR n 1 69 GLN n 1 70 LEU n 1 71 GLN n 1 72 LYS n 1 73 ILE n 1 74 TYR n 1 75 ASN n 1 76 GLU n 1 77 ILE n 1 78 ASP n 1 79 GLU n 1 80 ALA n 1 81 LEU n 1 82 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene YP_041408/SAR2035 _entity_src_gen.gene_src_species 'Staphylococcus aureus' _entity_src_gen.gene_src_strain MRSA252 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 282458 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Star (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name prSETB _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2FFF8_STAA3 _struct_ref.pdbx_db_accession Q2FFF8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STSLPTSNEYQNEKLANELKSLLDELNVNELATGSLNTYYKRTIKISGQKAMYALKSKDFKKMSEAKYQLQKIYNEIDEA LK ; _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QFF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 82 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2FFF8 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 113 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 82 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QFF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.65 _exptl_crystal.density_percent_sol 25.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;protein solution: 24 mg/ml SCIN in 50 mM NaCl, 20 mM TRIS, pH 8.0 well solution: 35% (w/v) PEG 1000, 0.1 M PCB-buffer (0.04 M sodium propionate, 0.02 M sodium cacodylate, 0.04 M bis-tris-propane) pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2005-05-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9793 1.0 2 0.9795 1.0 3 0.9763 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9793, 0.9795, 0.9763' # _reflns.entry_id 2QFF _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.8 _reflns.d_resolution_low 40 _reflns.number_all ? _reflns.number_obs 6281 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.9 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.425 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 7.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QFF _refine.ls_number_reflns_obs 5952 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.56 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.87 _refine.ls_R_factor_obs 0.20221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20113 _refine.ls_R_factor_R_free 0.2259 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 294 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 21.935 _refine.aniso_B[1][1] -0.03 _refine.aniso_B[2][2] -0.68 _refine.aniso_B[3][3] 0.71 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.166 _refine.pdbx_overall_ESU_R_Free 0.138 _refine.overall_SU_ML 0.100 _refine.overall_SU_B 6.349 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 607 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 649 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 35.56 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.022 ? 633 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.792 1.999 ? 847 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.311 5.000 ? 76 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.603 26.667 ? 30 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.996 15.000 ? 138 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 0.364 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.064 0.200 ? 92 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 460 'X-RAY DIFFRACTION' ? r_nbd_refined 0.175 0.200 ? 302 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.288 0.200 ? 454 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.090 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.150 0.200 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.220 0.200 ? 5 'X-RAY DIFFRACTION' ? r_mcbond_it 0.308 1.500 ? 399 'X-RAY DIFFRACTION' ? r_mcangle_it 0.478 2.000 ? 603 'X-RAY DIFFRACTION' ? r_scbond_it 0.942 3.000 ? 279 'X-RAY DIFFRACTION' ? r_scangle_it 1.528 4.500 ? 243 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work 430 _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QFF _struct.title 'Crystal structure of Staphylococcal Complement Inhibitor' _struct.pdbx_descriptor 'Hypothetical protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QFF _struct_keywords.pdbx_keywords 'Hydrolase Inhibitor' _struct_keywords.text 'Complement, Inhibitor, Inflammation, Bacterial, Molecular Biology, Hydrolase Inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 9 ? ASP A 24 ? GLU A 9 ASP A 24 1 ? 16 HELX_P HELX_P2 2 GLU A 25 ? THR A 33 ? GLU A 25 THR A 33 1 ? 9 HELX_P HELX_P3 3 GLY A 34 ? LEU A 36 ? GLY A 34 LEU A 36 5 ? 3 HELX_P HELX_P4 4 ASN A 37 ? LYS A 58 ? ASN A 37 LYS A 58 1 ? 22 HELX_P HELX_P5 5 ASP A 59 ? LYS A 82 ? ASP A 59 LYS A 82 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 51 C ? ? ? 1_555 A MSE 52 N A ? A ALA 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A ALA 51 C ? ? ? 1_555 A MSE 52 N B ? A ALA 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A MSE 52 C A ? ? 1_555 A TYR 53 N ? ? A MSE 52 A TYR 53 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 52 C B ? ? 1_555 A TYR 53 N ? ? A MSE 52 A TYR 53 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? A LYS 62 C ? ? ? 1_555 A MSE 63 N ? ? A LYS 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 63 C ? ? ? 1_555 A SER 64 N ? ? A MSE 63 A SER 64 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2QFF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QFF _atom_sites.fract_transf_matrix[1][1] 0.043446 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023378 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015647 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 LEU 4 4 ? ? ? A . n A 1 5 PRO 5 5 ? ? ? A . n A 1 6 THR 6 6 ? ? ? A . n A 1 7 SER 7 7 ? ? ? A . n A 1 8 ASN 8 8 ? ? ? A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 MSE 52 52 52 MSE MSE A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 MSE 63 63 63 MSE MSE A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 LYS 82 82 82 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 83 1 HOH HOH A . B 2 HOH 2 84 2 HOH HOH A . B 2 HOH 3 85 3 HOH HOH A . B 2 HOH 4 86 4 HOH HOH A . B 2 HOH 5 87 5 HOH HOH A . B 2 HOH 6 88 6 HOH HOH A . B 2 HOH 7 89 7 HOH HOH A . B 2 HOH 8 90 8 HOH HOH A . B 2 HOH 9 91 9 HOH HOH A . B 2 HOH 10 92 10 HOH HOH A . B 2 HOH 11 93 11 HOH HOH A . B 2 HOH 12 94 12 HOH HOH A . B 2 HOH 13 95 13 HOH HOH A . B 2 HOH 14 96 14 HOH HOH A . B 2 HOH 15 97 15 HOH HOH A . B 2 HOH 16 98 17 HOH HOH A . B 2 HOH 17 99 18 HOH HOH A . B 2 HOH 18 100 19 HOH HOH A . B 2 HOH 19 101 20 HOH HOH A . B 2 HOH 20 102 21 HOH HOH A . B 2 HOH 21 103 22 HOH HOH A . B 2 HOH 22 104 23 HOH HOH A . B 2 HOH 23 105 24 HOH HOH A . B 2 HOH 24 106 25 HOH HOH A . B 2 HOH 25 107 26 HOH HOH A . B 2 HOH 26 108 27 HOH HOH A . B 2 HOH 27 109 28 HOH HOH A . B 2 HOH 28 110 29 HOH HOH A . B 2 HOH 29 111 30 HOH HOH A . B 2 HOH 30 112 31 HOH HOH A . B 2 HOH 31 113 32 HOH HOH A . B 2 HOH 32 114 33 HOH HOH A . B 2 HOH 33 115 34 HOH HOH A . B 2 HOH 34 116 35 HOH HOH A . B 2 HOH 35 117 36 HOH HOH A . B 2 HOH 36 118 37 HOH HOH A . B 2 HOH 37 119 38 HOH HOH A . B 2 HOH 38 120 39 HOH HOH A . B 2 HOH 39 121 40 HOH HOH A . B 2 HOH 40 122 41 HOH HOH A . B 2 HOH 41 123 42 HOH HOH A . B 2 HOH 42 124 43 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 52 A MSE 52 ? MET SELENOMETHIONINE 2 A MSE 63 A MSE 63 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-04 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Source and taxonomy' 4 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 17.0587 26.5976 2.6182 0.1950 0.0516 -0.0844 -0.1616 0.0762 0.0339 13.1395 31.3620 6.7009 -13.5559 -2.5170 -0.7993 0.5868 -0.2369 -0.3498 0.6459 1.0103 -0.8357 -1.3641 -0.8628 0.2294 'X-RAY DIFFRACTION' 2 ? refined 23.2460 6.9668 7.8180 -0.1073 -0.0189 -0.0055 -0.0035 0.0251 -0.1168 6.2518 16.6885 22.8178 -4.6797 2.8155 -18.1081 0.0912 -0.1255 0.0343 0.4367 -0.4053 -0.6108 -0.2672 0.1999 0.2934 'X-RAY DIFFRACTION' 3 ? refined 15.7755 5.8877 13.2328 -0.1075 -0.0433 -0.0018 -0.0088 0.0174 -0.0308 6.0561 12.1928 11.4972 -3.2268 5.2422 -7.6241 -0.1060 0.0780 0.0281 0.0106 -0.2945 -0.0197 -0.1596 0.2738 -0.0378 'X-RAY DIFFRACTION' 4 ? refined 8.9477 17.5533 2.4555 0.1710 0.0642 -0.0337 -0.0863 -0.1448 -0.0349 17.4137 25.7137 11.6280 -4.5347 5.8099 -9.6101 -0.1549 0.4367 -0.2818 0.8861 -0.5024 0.7721 -1.8391 0.6690 -0.2151 'X-RAY DIFFRACTION' 5 ? refined 10.9417 22.7546 10.0372 -0.0372 -0.0444 -0.0242 -0.0393 -0.0515 0.0104 12.1841 13.7706 8.2610 -5.6412 3.6815 -4.0284 -0.2240 0.5103 -0.2863 -0.1491 0.1181 0.4845 -0.4960 -0.2918 -0.4345 'X-RAY DIFFRACTION' 6 ? refined 23.9075 12.7487 15.8854 -0.0675 -0.0467 -0.0289 -0.0253 0.0075 -0.0139 11.2298 14.3875 5.8601 -8.6082 7.2111 -5.0723 -0.2329 0.1306 0.1022 -0.1734 0.1365 -0.3244 0.3598 -0.1739 -0.0360 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 9 A 24 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 25 A 36 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 37 A 48 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 49 A 58 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 59 A 70 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 71 A 82 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.3.0008 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A LEU 4 ? A LEU 4 5 1 Y 1 A PRO 5 ? A PRO 5 6 1 Y 1 A THR 6 ? A THR 6 7 1 Y 1 A SER 7 ? A SER 7 8 1 Y 1 A ASN 8 ? A ASN 8 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #