data_2QJD # _entry.id 2QJD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QJD pdb_00002qjd 10.2210/pdb2qjd/pdb RCSB RCSB043671 ? ? WWPDB D_1000043671 ? ? # _pdbx_database_status.entry_id 2QJD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ostrov, D.A.' 1 'Hernandez Prada, J.A.' 2 'Haire, R.N.' 3 'Cannon, J.P.' 4 'Magis, A.T.' 5 'Bailey, K.M.' 6 'Litman, G.W.' 7 # _citation.id primary _citation.title 'A bony fish immunological receptor of the NITR multigene family mediates allogeneic recognition.' _citation.journal_abbrev Immunity _citation.journal_volume 29 _citation.page_first 228 _citation.page_last 237 _citation.year 2008 _citation.journal_id_ASTM IUNIEH _citation.country US _citation.journal_id_ISSN 1074-7613 _citation.journal_id_CSD 2048 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18674935 _citation.pdbx_database_id_DOI 10.1016/j.immuni.2008.05.018 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cannon, J.P.' 1 ? primary 'Haire, R.N.' 2 ? primary 'Magis, A.T.' 3 ? primary 'Eason, D.D.' 4 ? primary 'Winfrey, K.N.' 5 ? primary 'Hernandez Prada, J.A.' 6 ? primary 'Bailey, K.M.' 7 ? primary 'Jakoncic, J.' 8 ? primary 'Litman, G.W.' 9 ? primary 'Ostrov, D.A.' 10 ? # _cell.length_a 94.952 _cell.length_b 94.952 _cell.length_c 67.668 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2QJD _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 2QJD _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Novel immune-type receptor 10' 12790.462 2 ? N30D 'Extracellular fragment' ? 2 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MIKELHVKTVKRGENVTMECSMSKVKDKNKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNII GTREDDGGEYFCGEVEGNTIKFTSGTRLQF ; _entity_poly.pdbx_seq_one_letter_code_can ;MIKELHVKTVKRGENVTMECSMSKVKDKNKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNII GTREDDGGEYFCGEVEGNTIKFTSGTRLQF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 LYS n 1 4 GLU n 1 5 LEU n 1 6 HIS n 1 7 VAL n 1 8 LYS n 1 9 THR n 1 10 VAL n 1 11 LYS n 1 12 ARG n 1 13 GLY n 1 14 GLU n 1 15 ASN n 1 16 VAL n 1 17 THR n 1 18 MET n 1 19 GLU n 1 20 CYS n 1 21 SER n 1 22 MET n 1 23 SER n 1 24 LYS n 1 25 VAL n 1 26 LYS n 1 27 ASP n 1 28 LYS n 1 29 ASN n 1 30 LYS n 1 31 LEU n 1 32 ALA n 1 33 TRP n 1 34 TYR n 1 35 ARG n 1 36 GLN n 1 37 SER n 1 38 PHE n 1 39 GLY n 1 40 LYS n 1 41 VAL n 1 42 PRO n 1 43 GLN n 1 44 TYR n 1 45 PHE n 1 46 VAL n 1 47 ARG n 1 48 TYR n 1 49 TYR n 1 50 SER n 1 51 SER n 1 52 ASN n 1 53 SER n 1 54 GLY n 1 55 TYR n 1 56 LYS n 1 57 PHE n 1 58 ALA n 1 59 GLU n 1 60 GLY n 1 61 PHE n 1 62 LYS n 1 63 ASP n 1 64 SER n 1 65 ARG n 1 66 PHE n 1 67 SER n 1 68 MET n 1 69 THR n 1 70 VAL n 1 71 ASN n 1 72 ASP n 1 73 GLN n 1 74 LYS n 1 75 PHE n 1 76 ASP n 1 77 LEU n 1 78 ASN n 1 79 ILE n 1 80 ILE n 1 81 GLY n 1 82 THR n 1 83 ARG n 1 84 GLU n 1 85 ASP n 1 86 ASP n 1 87 GLY n 1 88 GLY n 1 89 GLU n 1 90 TYR n 1 91 PHE n 1 92 CYS n 1 93 GLY n 1 94 GLU n 1 95 VAL n 1 96 GLU n 1 97 GLY n 1 98 ASN n 1 99 THR n 1 100 ILE n 1 101 LYS n 1 102 PHE n 1 103 THR n 1 104 SER n 1 105 GLY n 1 106 THR n 1 107 ARG n 1 108 LEU n 1 109 GLN n 1 110 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Channel catfish' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NITR10 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'wild type' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ictalurus punctatus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Tuner _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-Blue1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8UWK5_ICTPU _struct_ref.pdbx_db_accession Q8UWK5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IKELHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIG TREDDGGEYFCGEVEGNTIKFTSGTRLQF ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QJD A 2 ? 110 ? Q8UWK5 23 ? 131 ? 3 111 2 1 2QJD B 2 ? 110 ? Q8UWK5 23 ? 131 ? 3 111 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QJD MET A 1 ? UNP Q8UWK5 ? ? 'initiating methionine' 2 1 1 2QJD ASN A 29 ? UNP Q8UWK5 ASP 50 'engineered mutation' 30 2 2 2QJD MET B 1 ? UNP Q8UWK5 ? ? 'initiating methionine' 2 3 2 2QJD ASN B 29 ? UNP Q8UWK5 ASP 50 'engineered mutation' 30 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2QJD _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.44 _exptl_crystal.density_percent_sol 64.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '24% PEG 4000, 0.08M Tris HCL, 0.16M Magnesium Chloride, 20% Glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-03-27 _diffrn_detector.details 'Oxford Danfysik toroidal focusing mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111) channel cut monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X6A # _reflns.entry_id 2QJD _reflns.d_resolution_high 2.440 _reflns.d_resolution_low 30.000 _reflns.number_obs 13266 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_netI_over_sigmaI 10.100 _reflns.pdbx_chi_squared 1.097 _reflns.pdbx_redundancy 4.200 _reflns.percent_possible_obs 98.700 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 13266 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.44 _reflns_shell.d_res_low 2.46 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.368 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.896 _reflns_shell.pdbx_redundancy 2.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 262 _reflns_shell.percent_possible_all 80.60 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QJD _refine.ls_d_res_high 2.440 _refine.ls_d_res_low 28.240 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.720 _refine.ls_number_reflns_obs 13252 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_obs 0.186 _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.239 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 651 _refine.B_iso_mean 39.333 _refine.aniso_B[1][1] 0.120 _refine.aniso_B[2][2] 0.120 _refine.aniso_B[3][3] -0.170 _refine.aniso_B[1][2] 0.060 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.917 _refine.pdbx_overall_ESU_R 0.287 _refine.pdbx_overall_ESU_R_Free 0.234 _refine.overall_SU_ML 0.172 _refine.overall_SU_B 7.483 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13266 _refine.ls_R_factor_all 0.185 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2QJD _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.44 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.51 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1780 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 1924 _refine_hist.d_res_high 2.440 _refine_hist.d_res_low 28.240 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1818 0.026 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2430 2.269 1.938 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 216 8.068 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 94 33.976 23.830 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 340 21.375 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12 23.673 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 244 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1386 0.009 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 780 0.233 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1144 0.318 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 142 0.213 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 31 0.358 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 11 0.260 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1106 1.553 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1722 2.627 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 821 3.584 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 708 5.907 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.439 _refine_ls_shell.d_res_low 2.502 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 87.360 _refine_ls_shell.number_reflns_R_work 820 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.246 _refine_ls_shell.R_factor_R_free 0.326 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 857 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QJD _struct.title 'Crystal Structure of Novel Immune-Type Receptor 10 Extracellular Fragment Mutant N30D' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QJD _struct_keywords.text 'Immunoglobulin Variable Domain-Like Beta-Sandwich, Immune-Type Receptor, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological unit is a dimer. There is 1 biological unit in the asymmetric unit (chains A & B).' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 27 ? ASN A 29 ? ASP A 28 ASN A 30 5 ? 3 HELX_P HELX_P2 2 ARG A 83 ? GLY A 87 ? ARG A 84 GLY A 88 5 ? 5 HELX_P HELX_P3 3 ASP B 27 ? ASN B 29 ? ASP B 28 ASN B 30 5 ? 3 HELX_P HELX_P4 4 ARG B 83 ? GLY B 87 ? ARG B 84 GLY B 88 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 20 SG ? ? ? 1_555 A CYS 92 SG ? ? A CYS 21 A CYS 93 1_555 ? ? ? ? ? ? ? 2.110 ? ? disulf2 disulf ? ? B CYS 20 SG ? ? ? 1_555 B CYS 92 SG ? ? B CYS 21 B CYS 93 1_555 ? ? ? ? ? ? ? 2.093 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 6 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 6 ? THR A 9 ? HIS A 7 THR A 10 A 2 THR A 99 ? GLN A 109 ? THR A 100 GLN A 110 A 3 GLY A 88 ? GLU A 96 ? GLY A 89 GLU A 97 A 4 LEU A 31 ? GLN A 36 ? LEU A 32 GLN A 37 A 5 GLN A 43 ? TYR A 48 ? GLN A 44 TYR A 49 A 6 TYR A 55 ? PHE A 57 ? TYR A 56 PHE A 58 B 1 ASN A 15 ? MET A 18 ? ASN A 16 MET A 19 B 2 PHE A 75 ? ILE A 80 ? PHE A 76 ILE A 81 B 3 PHE A 66 ? VAL A 70 ? PHE A 67 VAL A 71 C 1 HIS B 6 ? THR B 9 ? HIS B 7 THR B 10 C 2 ILE B 100 ? GLN B 109 ? ILE B 101 GLN B 110 C 3 GLY B 88 ? VAL B 95 ? GLY B 89 VAL B 96 C 4 LEU B 31 ? GLN B 36 ? LEU B 32 GLN B 37 C 5 GLN B 43 ? ARG B 47 ? GLN B 44 ARG B 48 C 6 LYS B 56 ? PHE B 57 ? LYS B 57 PHE B 58 D 1 ASN B 15 ? MET B 18 ? ASN B 16 MET B 19 D 2 PHE B 75 ? ILE B 80 ? PHE B 76 ILE B 81 D 3 PHE B 66 ? VAL B 70 ? PHE B 67 VAL B 71 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 8 ? N LYS A 9 O GLN A 109 ? O GLN A 110 A 2 3 O SER A 104 ? O SER A 105 N CYS A 92 ? N CYS A 93 A 3 4 O GLU A 89 ? O GLU A 90 N GLN A 36 ? N GLN A 37 A 4 5 N ARG A 35 ? N ARG A 36 O GLN A 43 ? O GLN A 44 A 5 6 N ARG A 47 ? N ARG A 48 O LYS A 56 ? O LYS A 57 B 1 2 N MET A 18 ? N MET A 19 O LEU A 77 ? O LEU A 78 B 2 3 O ASN A 78 ? O ASN A 79 N SER A 67 ? N SER A 68 C 1 2 N HIS B 6 ? N HIS B 7 O ARG B 107 ? O ARG B 108 C 2 3 O LYS B 101 ? O LYS B 102 N GLU B 94 ? N GLU B 95 C 3 4 O PHE B 91 ? O PHE B 92 N TYR B 34 ? N TYR B 35 C 4 5 N TRP B 33 ? N TRP B 34 O VAL B 46 ? O VAL B 47 C 5 6 N ARG B 47 ? N ARG B 48 O LYS B 56 ? O LYS B 57 D 1 2 N MET B 18 ? N MET B 19 O LEU B 77 ? O LEU B 78 D 2 3 O ASN B 78 ? O ASN B 79 N SER B 67 ? N SER B 68 # _atom_sites.entry_id 2QJD _atom_sites.fract_transf_matrix[1][1] 0.010532 _atom_sites.fract_transf_matrix[1][2] 0.006080 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012161 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014778 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 2 ? ? ? A . n A 1 2 ILE 2 3 3 ILE ILE A . n A 1 3 LYS 3 4 4 LYS LYS A . n A 1 4 GLU 4 5 5 GLU GLU A . n A 1 5 LEU 5 6 6 LEU LEU A . n A 1 6 HIS 6 7 7 HIS HIS A . n A 1 7 VAL 7 8 8 VAL VAL A . n A 1 8 LYS 8 9 9 LYS LYS A . n A 1 9 THR 9 10 10 THR THR A . n A 1 10 VAL 10 11 11 VAL VAL A . n A 1 11 LYS 11 12 12 LYS LYS A . n A 1 12 ARG 12 13 13 ARG ARG A . n A 1 13 GLY 13 14 14 GLY GLY A . n A 1 14 GLU 14 15 15 GLU GLU A . n A 1 15 ASN 15 16 16 ASN ASN A . n A 1 16 VAL 16 17 17 VAL VAL A . n A 1 17 THR 17 18 18 THR THR A . n A 1 18 MET 18 19 19 MET MET A . n A 1 19 GLU 19 20 20 GLU GLU A . n A 1 20 CYS 20 21 21 CYS CYS A . n A 1 21 SER 21 22 22 SER SER A . n A 1 22 MET 22 23 23 MET MET A . n A 1 23 SER 23 24 24 SER SER A . n A 1 24 LYS 24 25 25 LYS LYS A . n A 1 25 VAL 25 26 26 VAL VAL A . n A 1 26 LYS 26 27 27 LYS LYS A . n A 1 27 ASP 27 28 28 ASP ASP A . n A 1 28 LYS 28 29 29 LYS LYS A . n A 1 29 ASN 29 30 30 ASN ASN A . n A 1 30 LYS 30 31 31 LYS LYS A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 ALA 32 33 33 ALA ALA A . n A 1 33 TRP 33 34 34 TRP TRP A . n A 1 34 TYR 34 35 35 TYR TYR A . n A 1 35 ARG 35 36 36 ARG ARG A . n A 1 36 GLN 36 37 37 GLN GLN A . n A 1 37 SER 37 38 38 SER SER A . n A 1 38 PHE 38 39 39 PHE PHE A . n A 1 39 GLY 39 40 40 GLY GLY A . n A 1 40 LYS 40 41 41 LYS LYS A . n A 1 41 VAL 41 42 42 VAL VAL A . n A 1 42 PRO 42 43 43 PRO PRO A . n A 1 43 GLN 43 44 44 GLN GLN A . n A 1 44 TYR 44 45 45 TYR TYR A . n A 1 45 PHE 45 46 46 PHE PHE A . n A 1 46 VAL 46 47 47 VAL VAL A . n A 1 47 ARG 47 48 48 ARG ARG A . n A 1 48 TYR 48 49 49 TYR TYR A . n A 1 49 TYR 49 50 50 TYR TYR A . n A 1 50 SER 50 51 51 SER SER A . n A 1 51 SER 51 52 52 SER SER A . n A 1 52 ASN 52 53 53 ASN ASN A . n A 1 53 SER 53 54 54 SER SER A . n A 1 54 GLY 54 55 55 GLY GLY A . n A 1 55 TYR 55 56 56 TYR TYR A . n A 1 56 LYS 56 57 57 LYS LYS A . n A 1 57 PHE 57 58 58 PHE PHE A . n A 1 58 ALA 58 59 59 ALA ALA A . n A 1 59 GLU 59 60 60 GLU GLU A . n A 1 60 GLY 60 61 61 GLY GLY A . n A 1 61 PHE 61 62 62 PHE PHE A . n A 1 62 LYS 62 63 63 LYS LYS A . n A 1 63 ASP 63 64 64 ASP ASP A . n A 1 64 SER 64 65 65 SER SER A . n A 1 65 ARG 65 66 66 ARG ARG A . n A 1 66 PHE 66 67 67 PHE PHE A . n A 1 67 SER 67 68 68 SER SER A . n A 1 68 MET 68 69 69 MET MET A . n A 1 69 THR 69 70 70 THR THR A . n A 1 70 VAL 70 71 71 VAL VAL A . n A 1 71 ASN 71 72 72 ASN ASN A . n A 1 72 ASP 72 73 73 ASP ASP A . n A 1 73 GLN 73 74 74 GLN GLN A . n A 1 74 LYS 74 75 75 LYS LYS A . n A 1 75 PHE 75 76 76 PHE PHE A . n A 1 76 ASP 76 77 77 ASP ASP A . n A 1 77 LEU 77 78 78 LEU LEU A . n A 1 78 ASN 78 79 79 ASN ASN A . n A 1 79 ILE 79 80 80 ILE ILE A . n A 1 80 ILE 80 81 81 ILE ILE A . n A 1 81 GLY 81 82 82 GLY GLY A . n A 1 82 THR 82 83 83 THR THR A . n A 1 83 ARG 83 84 84 ARG ARG A . n A 1 84 GLU 84 85 85 GLU GLU A . n A 1 85 ASP 85 86 86 ASP ASP A . n A 1 86 ASP 86 87 87 ASP ASP A . n A 1 87 GLY 87 88 88 GLY GLY A . n A 1 88 GLY 88 89 89 GLY GLY A . n A 1 89 GLU 89 90 90 GLU GLU A . n A 1 90 TYR 90 91 91 TYR TYR A . n A 1 91 PHE 91 92 92 PHE PHE A . n A 1 92 CYS 92 93 93 CYS CYS A . n A 1 93 GLY 93 94 94 GLY GLY A . n A 1 94 GLU 94 95 95 GLU GLU A . n A 1 95 VAL 95 96 96 VAL VAL A . n A 1 96 GLU 96 97 97 GLU GLU A . n A 1 97 GLY 97 98 98 GLY GLY A . n A 1 98 ASN 98 99 99 ASN ASN A . n A 1 99 THR 99 100 100 THR THR A . n A 1 100 ILE 100 101 101 ILE ILE A . n A 1 101 LYS 101 102 102 LYS LYS A . n A 1 102 PHE 102 103 103 PHE PHE A . n A 1 103 THR 103 104 104 THR THR A . n A 1 104 SER 104 105 105 SER SER A . n A 1 105 GLY 105 106 106 GLY GLY A . n A 1 106 THR 106 107 107 THR THR A . n A 1 107 ARG 107 108 108 ARG ARG A . n A 1 108 LEU 108 109 109 LEU LEU A . n A 1 109 GLN 109 110 110 GLN GLN A . n A 1 110 PHE 110 111 111 PHE PHE A . n B 1 1 MET 1 2 ? ? ? B . n B 1 2 ILE 2 3 3 ILE ILE B . n B 1 3 LYS 3 4 4 LYS LYS B . n B 1 4 GLU 4 5 5 GLU GLU B . n B 1 5 LEU 5 6 6 LEU LEU B . n B 1 6 HIS 6 7 7 HIS HIS B . n B 1 7 VAL 7 8 8 VAL VAL B . n B 1 8 LYS 8 9 9 LYS LYS B . n B 1 9 THR 9 10 10 THR THR B . n B 1 10 VAL 10 11 11 VAL VAL B . n B 1 11 LYS 11 12 12 LYS LYS B . n B 1 12 ARG 12 13 13 ARG ARG B . n B 1 13 GLY 13 14 14 GLY GLY B . n B 1 14 GLU 14 15 15 GLU GLU B . n B 1 15 ASN 15 16 16 ASN ASN B . n B 1 16 VAL 16 17 17 VAL VAL B . n B 1 17 THR 17 18 18 THR THR B . n B 1 18 MET 18 19 19 MET MET B . n B 1 19 GLU 19 20 20 GLU GLU B . n B 1 20 CYS 20 21 21 CYS CYS B . n B 1 21 SER 21 22 22 SER SER B . n B 1 22 MET 22 23 23 MET MET B . n B 1 23 SER 23 24 24 SER SER B . n B 1 24 LYS 24 25 25 LYS LYS B . n B 1 25 VAL 25 26 26 VAL VAL B . n B 1 26 LYS 26 27 27 LYS LYS B . n B 1 27 ASP 27 28 28 ASP ASP B . n B 1 28 LYS 28 29 29 LYS LYS B . n B 1 29 ASN 29 30 30 ASN ASN B . n B 1 30 LYS 30 31 31 LYS LYS B . n B 1 31 LEU 31 32 32 LEU LEU B . n B 1 32 ALA 32 33 33 ALA ALA B . n B 1 33 TRP 33 34 34 TRP TRP B . n B 1 34 TYR 34 35 35 TYR TYR B . n B 1 35 ARG 35 36 36 ARG ARG B . n B 1 36 GLN 36 37 37 GLN GLN B . n B 1 37 SER 37 38 38 SER SER B . n B 1 38 PHE 38 39 39 PHE PHE B . n B 1 39 GLY 39 40 40 GLY GLY B . n B 1 40 LYS 40 41 41 LYS LYS B . n B 1 41 VAL 41 42 42 VAL VAL B . n B 1 42 PRO 42 43 43 PRO PRO B . n B 1 43 GLN 43 44 44 GLN GLN B . n B 1 44 TYR 44 45 45 TYR TYR B . n B 1 45 PHE 45 46 46 PHE PHE B . n B 1 46 VAL 46 47 47 VAL VAL B . n B 1 47 ARG 47 48 48 ARG ARG B . n B 1 48 TYR 48 49 49 TYR TYR B . n B 1 49 TYR 49 50 50 TYR TYR B . n B 1 50 SER 50 51 51 SER SER B . n B 1 51 SER 51 52 52 SER SER B . n B 1 52 ASN 52 53 53 ASN ASN B . n B 1 53 SER 53 54 54 SER SER B . n B 1 54 GLY 54 55 55 GLY GLY B . n B 1 55 TYR 55 56 56 TYR TYR B . n B 1 56 LYS 56 57 57 LYS LYS B . n B 1 57 PHE 57 58 58 PHE PHE B . n B 1 58 ALA 58 59 59 ALA ALA B . n B 1 59 GLU 59 60 60 GLU GLU B . n B 1 60 GLY 60 61 61 GLY GLY B . n B 1 61 PHE 61 62 62 PHE PHE B . n B 1 62 LYS 62 63 63 LYS LYS B . n B 1 63 ASP 63 64 64 ASP ASP B . n B 1 64 SER 64 65 65 SER SER B . n B 1 65 ARG 65 66 66 ARG ARG B . n B 1 66 PHE 66 67 67 PHE PHE B . n B 1 67 SER 67 68 68 SER SER B . n B 1 68 MET 68 69 69 MET MET B . n B 1 69 THR 69 70 70 THR THR B . n B 1 70 VAL 70 71 71 VAL VAL B . n B 1 71 ASN 71 72 72 ASN ASN B . n B 1 72 ASP 72 73 73 ASP ASP B . n B 1 73 GLN 73 74 74 GLN GLN B . n B 1 74 LYS 74 75 75 LYS LYS B . n B 1 75 PHE 75 76 76 PHE PHE B . n B 1 76 ASP 76 77 77 ASP ASP B . n B 1 77 LEU 77 78 78 LEU LEU B . n B 1 78 ASN 78 79 79 ASN ASN B . n B 1 79 ILE 79 80 80 ILE ILE B . n B 1 80 ILE 80 81 81 ILE ILE B . n B 1 81 GLY 81 82 82 GLY GLY B . n B 1 82 THR 82 83 83 THR THR B . n B 1 83 ARG 83 84 84 ARG ARG B . n B 1 84 GLU 84 85 85 GLU GLU B . n B 1 85 ASP 85 86 86 ASP ASP B . n B 1 86 ASP 86 87 87 ASP ASP B . n B 1 87 GLY 87 88 88 GLY GLY B . n B 1 88 GLY 88 89 89 GLY GLY B . n B 1 89 GLU 89 90 90 GLU GLU B . n B 1 90 TYR 90 91 91 TYR TYR B . n B 1 91 PHE 91 92 92 PHE PHE B . n B 1 92 CYS 92 93 93 CYS CYS B . n B 1 93 GLY 93 94 94 GLY GLY B . n B 1 94 GLU 94 95 95 GLU GLU B . n B 1 95 VAL 95 96 96 VAL VAL B . n B 1 96 GLU 96 97 97 GLU GLU B . n B 1 97 GLY 97 98 98 GLY GLY B . n B 1 98 ASN 98 99 99 ASN ASN B . n B 1 99 THR 99 100 100 THR THR B . n B 1 100 ILE 100 101 101 ILE ILE B . n B 1 101 LYS 101 102 102 LYS LYS B . n B 1 102 PHE 102 103 103 PHE PHE B . n B 1 103 THR 103 104 104 THR THR B . n B 1 104 SER 104 105 105 SER SER B . n B 1 105 GLY 105 106 106 GLY GLY B . n B 1 106 THR 106 107 107 THR THR B . n B 1 107 ARG 107 108 108 ARG ARG B . n B 1 108 LEU 108 109 109 LEU LEU B . n B 1 109 GLN 109 110 110 GLN GLN B . n B 1 110 PHE 110 111 111 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 112 3 HOH HOH A . C 2 HOH 2 113 5 HOH HOH A . C 2 HOH 3 114 6 HOH HOH A . C 2 HOH 4 115 8 HOH HOH A . C 2 HOH 5 116 10 HOH HOH A . C 2 HOH 6 117 11 HOH HOH A . C 2 HOH 7 118 14 HOH HOH A . C 2 HOH 8 119 15 HOH HOH A . C 2 HOH 9 120 16 HOH HOH A . C 2 HOH 10 121 17 HOH HOH A . C 2 HOH 11 122 21 HOH HOH A . C 2 HOH 12 123 26 HOH HOH A . C 2 HOH 13 124 30 HOH HOH A . C 2 HOH 14 125 33 HOH HOH A . C 2 HOH 15 126 34 HOH HOH A . C 2 HOH 16 127 35 HOH HOH A . C 2 HOH 17 128 36 HOH HOH A . C 2 HOH 18 129 37 HOH HOH A . C 2 HOH 19 130 39 HOH HOH A . C 2 HOH 20 131 40 HOH HOH A . C 2 HOH 21 132 41 HOH HOH A . C 2 HOH 22 133 42 HOH HOH A . C 2 HOH 23 134 48 HOH HOH A . C 2 HOH 24 135 53 HOH HOH A . C 2 HOH 25 136 54 HOH HOH A . C 2 HOH 26 137 55 HOH HOH A . C 2 HOH 27 138 58 HOH HOH A . C 2 HOH 28 139 60 HOH HOH A . C 2 HOH 29 140 61 HOH HOH A . C 2 HOH 30 141 66 HOH HOH A . C 2 HOH 31 142 69 HOH HOH A . C 2 HOH 32 143 72 HOH HOH A . C 2 HOH 33 144 73 HOH HOH A . C 2 HOH 34 145 74 HOH HOH A . C 2 HOH 35 146 77 HOH HOH A . C 2 HOH 36 147 79 HOH HOH A . C 2 HOH 37 148 81 HOH HOH A . C 2 HOH 38 149 88 HOH HOH A . C 2 HOH 39 150 90 HOH HOH A . C 2 HOH 40 151 91 HOH HOH A . C 2 HOH 41 152 93 HOH HOH A . C 2 HOH 42 153 95 HOH HOH A . C 2 HOH 43 154 100 HOH HOH A . C 2 HOH 44 155 102 HOH HOH A . C 2 HOH 45 156 107 HOH HOH A . C 2 HOH 46 157 116 HOH HOH A . C 2 HOH 47 158 118 HOH HOH A . C 2 HOH 48 159 120 HOH HOH A . C 2 HOH 49 160 121 HOH HOH A . C 2 HOH 50 161 123 HOH HOH A . C 2 HOH 51 162 125 HOH HOH A . C 2 HOH 52 163 126 HOH HOH A . C 2 HOH 53 164 127 HOH HOH A . C 2 HOH 54 165 128 HOH HOH A . C 2 HOH 55 166 130 HOH HOH A . C 2 HOH 56 167 132 HOH HOH A . C 2 HOH 57 168 138 HOH HOH A . C 2 HOH 58 169 139 HOH HOH A . C 2 HOH 59 170 140 HOH HOH A . C 2 HOH 60 171 141 HOH HOH A . C 2 HOH 61 172 143 HOH HOH A . C 2 HOH 62 173 151 HOH HOH A . C 2 HOH 63 174 155 HOH HOH A . C 2 HOH 64 175 157 HOH HOH A . D 2 HOH 1 112 1 HOH HOH B . D 2 HOH 2 113 4 HOH HOH B . D 2 HOH 3 114 7 HOH HOH B . D 2 HOH 4 115 9 HOH HOH B . D 2 HOH 5 116 12 HOH HOH B . D 2 HOH 6 117 13 HOH HOH B . D 2 HOH 7 118 18 HOH HOH B . D 2 HOH 8 119 20 HOH HOH B . D 2 HOH 9 120 22 HOH HOH B . D 2 HOH 10 121 23 HOH HOH B . D 2 HOH 11 122 24 HOH HOH B . D 2 HOH 12 123 25 HOH HOH B . D 2 HOH 13 124 28 HOH HOH B . D 2 HOH 14 125 29 HOH HOH B . D 2 HOH 15 126 31 HOH HOH B . D 2 HOH 16 127 38 HOH HOH B . D 2 HOH 17 128 43 HOH HOH B . D 2 HOH 18 129 44 HOH HOH B . D 2 HOH 19 130 45 HOH HOH B . D 2 HOH 20 131 46 HOH HOH B . D 2 HOH 21 132 47 HOH HOH B . D 2 HOH 22 133 49 HOH HOH B . D 2 HOH 23 134 50 HOH HOH B . D 2 HOH 24 135 52 HOH HOH B . D 2 HOH 25 136 56 HOH HOH B . D 2 HOH 26 137 57 HOH HOH B . D 2 HOH 27 138 59 HOH HOH B . D 2 HOH 28 139 62 HOH HOH B . D 2 HOH 29 140 63 HOH HOH B . D 2 HOH 30 141 64 HOH HOH B . D 2 HOH 31 142 65 HOH HOH B . D 2 HOH 32 143 67 HOH HOH B . D 2 HOH 33 144 68 HOH HOH B . D 2 HOH 34 145 70 HOH HOH B . D 2 HOH 35 146 71 HOH HOH B . D 2 HOH 36 147 75 HOH HOH B . D 2 HOH 37 148 76 HOH HOH B . D 2 HOH 38 149 78 HOH HOH B . D 2 HOH 39 150 80 HOH HOH B . D 2 HOH 40 151 82 HOH HOH B . D 2 HOH 41 152 83 HOH HOH B . D 2 HOH 42 153 84 HOH HOH B . D 2 HOH 43 154 87 HOH HOH B . D 2 HOH 44 155 89 HOH HOH B . D 2 HOH 45 156 94 HOH HOH B . D 2 HOH 46 157 96 HOH HOH B . D 2 HOH 47 158 99 HOH HOH B . D 2 HOH 48 159 101 HOH HOH B . D 2 HOH 49 160 103 HOH HOH B . D 2 HOH 50 161 104 HOH HOH B . D 2 HOH 51 162 105 HOH HOH B . D 2 HOH 52 163 106 HOH HOH B . D 2 HOH 53 164 108 HOH HOH B . D 2 HOH 54 165 109 HOH HOH B . D 2 HOH 55 166 110 HOH HOH B . D 2 HOH 56 167 111 HOH HOH B . D 2 HOH 57 168 112 HOH HOH B . D 2 HOH 58 169 113 HOH HOH B . D 2 HOH 59 170 114 HOH HOH B . D 2 HOH 60 171 115 HOH HOH B . D 2 HOH 61 172 117 HOH HOH B . D 2 HOH 62 173 119 HOH HOH B . D 2 HOH 63 174 122 HOH HOH B . D 2 HOH 64 175 124 HOH HOH B . D 2 HOH 65 176 129 HOH HOH B . D 2 HOH 66 177 131 HOH HOH B . D 2 HOH 67 178 133 HOH HOH B . D 2 HOH 68 179 134 HOH HOH B . D 2 HOH 69 180 136 HOH HOH B . D 2 HOH 70 181 137 HOH HOH B . D 2 HOH 71 182 142 HOH HOH B . D 2 HOH 72 183 144 HOH HOH B . D 2 HOH 73 184 145 HOH HOH B . D 2 HOH 74 185 147 HOH HOH B . D 2 HOH 75 186 148 HOH HOH B . D 2 HOH 76 187 149 HOH HOH B . D 2 HOH 77 188 150 HOH HOH B . D 2 HOH 78 189 153 HOH HOH B . D 2 HOH 79 190 154 HOH HOH B . D 2 HOH 80 191 156 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2640 ? 1 MORE -13.8 ? 1 'SSA (A^2)' 11450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 5 'Structure model' database_2 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.location' 5 4 'Structure model' '_software.name' 6 4 'Structure model' '_software.type' 7 4 'Structure model' '_software.version' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' 10 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? ? ? ? refinement ? ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 MOLREP . ? ? ? ? phasing ? ? ? 8 DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 9 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 85 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 85 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.652 _pdbx_validate_rmsd_bond.bond_target_value 1.515 _pdbx_validate_rmsd_bond.bond_deviation 0.137 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 13 ? ? CZ B ARG 13 ? ? NH1 B ARG 13 ? ? 116.30 120.30 -4.00 0.50 N 2 1 CG B MET 69 ? ? SD B MET 69 ? ? CE B MET 69 ? ? 90.14 100.20 -10.06 1.60 N 3 1 NE B ARG 108 ? ? CZ B ARG 108 ? ? NH1 B ARG 108 ? ? 116.95 120.30 -3.35 0.50 N 4 1 NE B ARG 108 ? ? CZ B ARG 108 ? ? NH2 B ARG 108 ? ? 123.68 120.30 3.38 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 52 ? ? 176.80 179.29 2 1 LYS B 27 ? ? -50.81 -78.96 3 1 SER B 51 ? ? -72.14 32.87 4 1 ASN B 72 ? ? -125.66 -147.43 5 1 SER B 105 ? ? -172.15 145.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 2 ? A MET 1 2 1 Y 1 B MET 2 ? B MET 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #