data_2QUS # _entry.id 2QUS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QUS pdb_00002qus 10.2210/pdb2qus/pdb NDB UR0121 ? ? RCSB RCSB044081 ? ? WWPDB D_1000044081 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_conn_type 6 3 'Structure model' struct_site 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_conn_type.id' 22 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2QUS _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-08-06 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2GOZ . unspecified PDB 2QUS . unspecified PDB 2QUW . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chi, Y.I.' 1 'Scott, W.G.' 2 'Kim, S.H.' 3 # _citation.id primary _citation.title 'Capturing hammerhead ribozyme structures in action by modulating general base catalysis.' _citation.journal_abbrev 'Plos Biol.' _citation.journal_volume 6 _citation.page_first e234 _citation.page_last e234 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1544-9173 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18834200 _citation.pdbx_database_id_DOI 10.1371/journal.pbio.0060234 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chi, Y.I.' 1 ? primary 'Martick, M.' 2 ? primary 'Lares, M.' 3 ? primary 'Kim, R.' 4 ? primary 'Scott, W.G.' 5 ? primary 'Kim, S.H.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Hammerhead ribozyme' 22404.166 2 ? ? ? 'uncleaved sTRSV hammerhead RNA' 2 non-polymer syn 'MAGNESIUM ION' 24.305 16 ? ? ? ? 3 water nat water 18.015 131 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GTP)GGAGCCCUGUCACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACAAAACAGGGCUCCCGAAUU' _entity_poly.pdbx_seq_one_letter_code_can GGGAGCCCUGUCACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACAAAACAGGGCUCCCGAAUU _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 G n 1 4 A n 1 5 G n 1 6 C n 1 7 C n 1 8 C n 1 9 U n 1 10 G n 1 11 U n 1 12 C n 1 13 A n 1 14 C n 1 15 C n 1 16 G n 1 17 G n 1 18 A n 1 19 U n 1 20 G n 1 21 U n 1 22 G n 1 23 C n 1 24 U n 1 25 U n 1 26 U n 1 27 C n 1 28 C n 1 29 G n 1 30 G n 1 31 U n 1 32 C n 1 33 U n 1 34 G n 1 35 A n 1 36 U n 1 37 G n 1 38 A n 1 39 G n 1 40 U n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 G n 1 46 A n 1 47 G n 1 48 G n 1 49 A n 1 50 C n 1 51 A n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 A n 1 57 G n 1 58 G n 1 59 G n 1 60 C n 1 61 U n 1 62 C n 1 63 C n 1 64 C n 1 65 G n 1 66 A n 1 67 A n 1 68 U n 1 69 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'in vitro T7 RNA polymerase transcription' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 U 25 25 25 U U A . n A 1 26 U 26 26 26 U U A . n A 1 27 C 27 27 27 C C A . n A 1 28 C 28 28 28 C C A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 C 32 32 32 C C A . n A 1 33 U 33 33 33 U U A . n A 1 34 G 34 34 34 G G A . n A 1 35 A 35 35 35 A A A . n A 1 36 U 36 36 36 U U A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 G 39 39 39 G G A . n A 1 40 U 40 40 40 U U A . n A 1 41 C 41 41 41 C C A . n A 1 42 C 42 42 42 C C A . n A 1 43 G 43 43 43 G G A . n A 1 44 U 44 44 44 U U A . n A 1 45 G 45 45 45 G G A . n A 1 46 A 46 46 46 A A A . n A 1 47 G 47 47 47 G G A . n A 1 48 G 48 48 48 G G A . n A 1 49 A 49 49 49 A A A . n A 1 50 C 50 50 50 C C A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 A 54 54 54 A A A . n A 1 55 C 55 55 55 C C A . n A 1 56 A 56 56 56 A A A . n A 1 57 G 57 57 57 G G A . n A 1 58 G 58 58 58 G G A . n A 1 59 G 59 59 59 G G A . n A 1 60 C 60 60 60 C C A . n A 1 61 U 61 61 61 U U A . n A 1 62 C 62 62 62 C C A . n A 1 63 C 63 63 63 C C A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 A 66 66 66 A A A . n A 1 67 A 67 67 67 A A A . n A 1 68 U 68 68 68 U U A . n A 1 69 U 69 69 69 U U A . n B 1 1 GTP 1 1 1 GTP GTP B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 A 4 4 4 A A B . n B 1 5 G 5 5 5 G G B . n B 1 6 C 6 6 6 C C B . n B 1 7 C 7 7 7 C C B . n B 1 8 C 8 8 8 C C B . n B 1 9 U 9 9 9 U U B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 C 12 12 12 C C B . n B 1 13 A 13 13 13 A A B . n B 1 14 C 14 14 14 C C B . n B 1 15 C 15 15 15 C C B . n B 1 16 G 16 16 16 G G B . n B 1 17 G 17 17 17 G G B . n B 1 18 A 18 18 18 A A B . n B 1 19 U 19 19 19 U U B . n B 1 20 G 20 20 20 G G B . n B 1 21 U 21 21 21 U U B . n B 1 22 G 22 22 22 G G B . n B 1 23 C 23 23 23 C C B . n B 1 24 U 24 24 24 U U B . n B 1 25 U 25 25 25 U U B . n B 1 26 U 26 26 26 U U B . n B 1 27 C 27 27 27 C C B . n B 1 28 C 28 28 28 C C B . n B 1 29 G 29 29 29 G G B . n B 1 30 G 30 30 30 G G B . n B 1 31 U 31 31 31 U U B . n B 1 32 C 32 32 32 C C B . n B 1 33 U 33 33 33 U U B . n B 1 34 G 34 34 34 G G B . n B 1 35 A 35 35 35 A A B . n B 1 36 U 36 36 36 U U B . n B 1 37 G 37 37 37 G G B . n B 1 38 A 38 38 38 A A B . n B 1 39 G 39 39 39 G G B . n B 1 40 U 40 40 40 U U B . n B 1 41 C 41 41 41 C C B . n B 1 42 C 42 42 42 C C B . n B 1 43 G 43 43 43 G G B . n B 1 44 U 44 44 44 U U B . n B 1 45 G 45 45 45 G G B . n B 1 46 A 46 46 46 A A B . n B 1 47 G 47 47 47 G G B . n B 1 48 G 48 48 48 G G B . n B 1 49 A 49 49 49 A A B . n B 1 50 C 50 50 50 C C B . n B 1 51 A 51 51 51 A A B . n B 1 52 A 52 52 52 A A B . n B 1 53 A 53 53 53 A A B . n B 1 54 A 54 54 54 A A B . n B 1 55 C 55 55 55 C C B . n B 1 56 A 56 56 56 A A B . n B 1 57 G 57 57 57 G G B . n B 1 58 G 58 58 58 G G B . n B 1 59 G 59 59 59 G G B . n B 1 60 C 60 60 60 C C B . n B 1 61 U 61 61 61 U U B . n B 1 62 C 62 62 62 C C B . n B 1 63 C 63 63 63 C C B . n B 1 64 C 64 64 64 C C B . n B 1 65 G 65 65 65 G G B . n B 1 66 A 66 66 66 A A B . n B 1 67 A 67 67 67 A A B . n B 1 68 U 68 68 68 U U B . n B 1 69 U 69 69 69 U U B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 70 1 MG MG A . D 2 MG 1 71 4 MG MG A . E 2 MG 1 72 5 MG MG A . F 2 MG 1 73 6 MG MG A . G 2 MG 1 74 8 MG MG A . H 2 MG 1 75 10 MG MG A . I 2 MG 1 76 11 MG MG A . J 2 MG 1 77 12 MG MG A . K 2 MG 1 70 2 MG MG B . L 2 MG 1 71 3 MG MG B . M 2 MG 1 72 7 MG MG B . N 2 MG 1 73 9 MG MG B . O 2 MG 1 74 13 MG MG B . P 2 MG 1 75 14 MG MG B . Q 2 MG 1 76 15 MG MG B . R 2 MG 1 77 16 MG MG B . S 3 HOH 1 78 1 HOH HOH A . S 3 HOH 2 79 2 HOH HOH A . S 3 HOH 3 80 8 HOH HOH A . S 3 HOH 4 81 9 HOH HOH A . S 3 HOH 5 82 10 HOH HOH A . S 3 HOH 6 83 12 HOH HOH A . S 3 HOH 7 84 13 HOH HOH A . S 3 HOH 8 85 15 HOH HOH A . S 3 HOH 9 86 24 HOH HOH A . S 3 HOH 10 87 25 HOH HOH A . S 3 HOH 11 88 29 HOH HOH A . S 3 HOH 12 89 30 HOH HOH A . S 3 HOH 13 90 34 HOH HOH A . S 3 HOH 14 91 36 HOH HOH A . S 3 HOH 15 92 37 HOH HOH A . S 3 HOH 16 93 38 HOH HOH A . S 3 HOH 17 94 39 HOH HOH A . S 3 HOH 18 95 40 HOH HOH A . S 3 HOH 19 96 42 HOH HOH A . S 3 HOH 20 97 43 HOH HOH A . S 3 HOH 21 98 44 HOH HOH A . S 3 HOH 22 99 45 HOH HOH A . S 3 HOH 23 100 49 HOH HOH A . S 3 HOH 24 101 50 HOH HOH A . S 3 HOH 25 102 51 HOH HOH A . S 3 HOH 26 103 53 HOH HOH A . S 3 HOH 27 104 55 HOH HOH A . S 3 HOH 28 105 56 HOH HOH A . S 3 HOH 29 106 57 HOH HOH A . S 3 HOH 30 107 59 HOH HOH A . S 3 HOH 31 108 61 HOH HOH A . S 3 HOH 32 109 66 HOH HOH A . S 3 HOH 33 110 67 HOH HOH A . S 3 HOH 34 111 68 HOH HOH A . S 3 HOH 35 112 69 HOH HOH A . S 3 HOH 36 113 73 HOH HOH A . S 3 HOH 37 114 74 HOH HOH A . S 3 HOH 38 115 78 HOH HOH A . S 3 HOH 39 116 79 HOH HOH A . S 3 HOH 40 117 83 HOH HOH A . S 3 HOH 41 118 85 HOH HOH A . S 3 HOH 42 119 86 HOH HOH A . S 3 HOH 43 120 88 HOH HOH A . S 3 HOH 44 121 89 HOH HOH A . S 3 HOH 45 122 90 HOH HOH A . S 3 HOH 46 123 91 HOH HOH A . S 3 HOH 47 124 96 HOH HOH A . S 3 HOH 48 125 97 HOH HOH A . S 3 HOH 49 126 98 HOH HOH A . S 3 HOH 50 127 100 HOH HOH A . S 3 HOH 51 128 101 HOH HOH A . S 3 HOH 52 129 103 HOH HOH A . S 3 HOH 53 130 104 HOH HOH A . S 3 HOH 54 131 105 HOH HOH A . S 3 HOH 55 132 110 HOH HOH A . S 3 HOH 56 133 113 HOH HOH A . S 3 HOH 57 134 114 HOH HOH A . S 3 HOH 58 135 115 HOH HOH A . S 3 HOH 59 136 117 HOH HOH A . S 3 HOH 60 137 119 HOH HOH A . S 3 HOH 61 138 120 HOH HOH A . S 3 HOH 62 139 121 HOH HOH A . S 3 HOH 63 140 123 HOH HOH A . S 3 HOH 64 141 124 HOH HOH A . S 3 HOH 65 142 125 HOH HOH A . S 3 HOH 66 143 126 HOH HOH A . S 3 HOH 67 144 128 HOH HOH A . S 3 HOH 68 145 130 HOH HOH A . S 3 HOH 69 146 131 HOH HOH A . S 3 HOH 70 147 133 HOH HOH A . S 3 HOH 71 148 134 HOH HOH A . S 3 HOH 72 149 135 HOH HOH A . T 3 HOH 1 78 3 HOH HOH B . T 3 HOH 2 79 4 HOH HOH B . T 3 HOH 3 80 5 HOH HOH B . T 3 HOH 4 81 6 HOH HOH B . T 3 HOH 5 82 7 HOH HOH B . T 3 HOH 6 83 11 HOH HOH B . T 3 HOH 7 84 14 HOH HOH B . T 3 HOH 8 85 16 HOH HOH B . T 3 HOH 9 86 17 HOH HOH B . T 3 HOH 10 87 18 HOH HOH B . T 3 HOH 11 88 19 HOH HOH B . T 3 HOH 12 89 20 HOH HOH B . T 3 HOH 13 90 21 HOH HOH B . T 3 HOH 14 91 22 HOH HOH B . T 3 HOH 15 92 23 HOH HOH B . T 3 HOH 16 93 26 HOH HOH B . T 3 HOH 17 94 27 HOH HOH B . T 3 HOH 18 95 28 HOH HOH B . T 3 HOH 19 96 31 HOH HOH B . T 3 HOH 20 97 32 HOH HOH B . T 3 HOH 21 98 33 HOH HOH B . T 3 HOH 22 99 35 HOH HOH B . T 3 HOH 23 100 41 HOH HOH B . T 3 HOH 24 101 46 HOH HOH B . T 3 HOH 25 102 47 HOH HOH B . T 3 HOH 26 103 48 HOH HOH B . T 3 HOH 27 104 52 HOH HOH B . T 3 HOH 28 105 54 HOH HOH B . T 3 HOH 29 106 58 HOH HOH B . T 3 HOH 30 107 60 HOH HOH B . T 3 HOH 31 108 62 HOH HOH B . T 3 HOH 32 109 64 HOH HOH B . T 3 HOH 33 110 65 HOH HOH B . T 3 HOH 34 111 70 HOH HOH B . T 3 HOH 35 112 71 HOH HOH B . T 3 HOH 36 113 72 HOH HOH B . T 3 HOH 37 114 75 HOH HOH B . T 3 HOH 38 115 76 HOH HOH B . T 3 HOH 39 116 77 HOH HOH B . T 3 HOH 40 117 81 HOH HOH B . T 3 HOH 41 118 82 HOH HOH B . T 3 HOH 42 119 84 HOH HOH B . T 3 HOH 43 120 87 HOH HOH B . T 3 HOH 44 121 92 HOH HOH B . T 3 HOH 45 122 93 HOH HOH B . T 3 HOH 46 123 94 HOH HOH B . T 3 HOH 47 124 95 HOH HOH B . T 3 HOH 48 125 99 HOH HOH B . T 3 HOH 49 126 102 HOH HOH B . T 3 HOH 50 127 106 HOH HOH B . T 3 HOH 51 128 107 HOH HOH B . T 3 HOH 52 129 108 HOH HOH B . T 3 HOH 53 130 109 HOH HOH B . T 3 HOH 54 131 116 HOH HOH B . T 3 HOH 55 132 118 HOH HOH B . T 3 HOH 56 133 122 HOH HOH B . T 3 HOH 57 134 127 HOH HOH B . T 3 HOH 58 135 129 HOH HOH B . T 3 HOH 59 136 132 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 # _cell.length_a 27.926 _cell.length_b 53.030 _cell.length_c 71.963 _cell.angle_alpha 74.570 _cell.angle_beta 81.370 _cell.angle_gamma 75.610 _cell.entry_id 2QUS _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1' _symmetry.entry_id 2QUS _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 1 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2QUS _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2QUS _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 25.67 _reflns.number_all 12926 _reflns.number_obs 11632 _reflns.percent_possible_obs 86.05 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 2QUS _refine.ls_d_res_high 2.400 _refine.ls_d_res_low 25.670 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 86.050 _refine.ls_number_reflns_obs 12926 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.253 _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 1294 _refine.B_iso_mean 58.401 _refine.aniso_B[1][1] 0.770 _refine.aniso_B[2][2] -0.340 _refine.aniso_B[3][3] -0.660 _refine.aniso_B[1][2] 0.710 _refine.aniso_B[1][3] -0.090 _refine.aniso_B[2][3] -0.190 _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.917 _refine.pdbx_overall_ESU_R_Free 0.342 _refine.overall_SU_ML 0.228 _refine.overall_SU_B 18.854 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'small helical fragments' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2966 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 3113 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 25.670 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3321 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 5158 1.850 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 688 0.105 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1430 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1340 0.189 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 2053 0.282 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 153 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 1 0.117 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 36 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 17 0.196 0.200 ? 'X-RAY DIFFRACTION' ? r_scbond_it 4707 1.080 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 5158 1.715 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 54.960 _refine_ls_shell.number_reflns_R_work 548 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.260 _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 609 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QUS _struct.title 'Hammerhead Ribozyme G12A mutant pre-cleavage' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QUS _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Hammerhead RNA, hammerhead ribozyme, catalytic RNA, satellite virus RNA, ribozyme, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 3 ? T N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2QUS _struct_ref.pdbx_db_accession 2QUS _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QUS A 1 ? 69 ? 2QUS 1 ? 69 ? 1 69 2 1 2QUS B 1 ? 69 ? 2QUS 1 ? 69 ? 1 69 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,S 2 1 B,K,L,M,N,O,P,Q,R,T # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.579 ? ? covale2 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GTP 1 B G 2 1_555 ? ? ? ? ? ? ? 1.616 ? ? metalc1 metalc ? ? A A 13 OP1 ? ? ? 1_555 D MG . MG ? ? A A 13 A MG 71 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc2 metalc ? ? A G 43 OP2 ? ? ? 1_555 G MG . MG ? ? A G 43 A MG 74 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc3 metalc ? ? A A 49 N7 ? ? ? 1_555 F MG . MG ? ? A A 49 A MG 73 1_555 ? ? ? ? ? ? ? 1.968 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 S HOH . O ? ? A MG 72 A HOH 146 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc5 metalc ? ? J MG . MG ? ? ? 1_555 S HOH . O ? ? A MG 77 A HOH 147 1_555 ? ? ? ? ? ? ? 1.872 ? ? metalc6 metalc ? ? B C 6 "O3'" ? ? ? 1_555 R MG . MG ? ? B C 6 B MG 77 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc7 metalc ? ? B A 18 N7 ? ? ? 1_555 N MG . MG ? ? B A 18 B MG 73 1_555 ? ? ? ? ? ? ? 1.957 ? ? metalc8 metalc ? ? B A 18 N6 ? ? ? 1_555 N MG . MG ? ? B A 18 B MG 73 1_555 ? ? ? ? ? ? ? 1.924 ? ? metalc9 metalc ? ? B G 57 N7 ? ? ? 1_555 K MG . MG ? ? B G 57 B MG 70 1_555 ? ? ? ? ? ? ? 2.042 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 64 N3 ? ? A GTP 1 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 64 O2 ? ? A GTP 1 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 64 N4 ? ? A GTP 1 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 2 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 2 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 2 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 3 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 3 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 3 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 4 A U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 61 O4 ? ? A A 4 A U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 5 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 5 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 5 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 59 N1 ? ? A C 6 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 59 O6 ? ? A C 6 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 59 N2 ? ? A C 6 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 7 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 7 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 7 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 57 N1 ? ? A C 8 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 57 O6 ? ? A C 8 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 57 N2 ? ? A C 8 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 56 N1 ? ? A U 9 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 56 N6 ? ? A U 9 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 10 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 10 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 10 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 54 N1 ? ? A U 11 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 54 N6 ? ? A U 11 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 12 O2 ? ? ? 1_555 A A 52 N6 ? ? A C 12 A A 52 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog32 hydrog ? ? A C 12 O2 ? ? ? 1_555 A A 53 N6 ? ? A C 12 A A 53 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 31 N3 ? ? A A 13 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 31 O4 ? ? A A 13 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 14 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 14 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 14 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 15 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 15 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 15 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 16 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 16 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 16 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 17 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 17 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 17 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 26 N3 ? ? A A 18 A U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 26 O4 ? ? A A 18 A U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 46 N7 ? ? A U 19 A A 46 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A U 19 O2 ? ? ? 1_555 A A 46 N6 ? ? A U 19 A A 46 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? A G 20 N2 ? ? ? 1_555 A U 21 O4 ? ? A G 20 A U 21 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog52 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 24 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 24 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 32 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 32 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 32 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 38 N6 ? ? ? 1_555 A A 51 N3 ? ? A A 38 A A 51 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A G 39 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 39 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 39 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 39 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 39 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 40 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 40 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 41 N3 ? ? ? 1_555 A G 48 N1 ? ? A C 41 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 41 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 41 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 41 O2 ? ? ? 1_555 A G 48 N2 ? ? A C 41 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B GTP 1 N1 ? ? ? 1_555 B C 64 N3 ? ? B GTP 1 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B GTP 1 N2 ? ? ? 1_555 B C 64 O2 ? ? B GTP 1 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B GTP 1 O6 ? ? ? 1_555 B C 64 N4 ? ? B GTP 1 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 63 N3 ? ? B G 2 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 63 O2 ? ? B G 2 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 63 N4 ? ? B G 2 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 62 N3 ? ? B G 3 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 62 O2 ? ? B G 3 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 62 N4 ? ? B G 3 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 61 N3 ? ? B A 4 B U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 61 O4 ? ? B A 4 B U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 60 N3 ? ? B G 5 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 60 O2 ? ? B G 5 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 60 N4 ? ? B G 5 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 59 N1 ? ? B C 6 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 59 O6 ? ? B C 6 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 59 N2 ? ? B C 6 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 58 N1 ? ? B C 7 B G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 58 O6 ? ? B C 7 B G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 58 N2 ? ? B C 7 B G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 57 N1 ? ? B C 8 B G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 57 O6 ? ? B C 8 B G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 57 N2 ? ? B C 8 B G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 56 N1 ? ? B U 9 B A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 56 N6 ? ? B U 9 B A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 55 N3 ? ? B G 10 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 55 O2 ? ? B G 10 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 55 N4 ? ? B G 10 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B U 11 N3 ? ? ? 1_555 B A 54 N1 ? ? B U 11 B A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B U 11 O4 ? ? ? 1_555 B A 54 N6 ? ? B U 11 B A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 12 O2 ? ? ? 1_555 B A 52 N6 ? ? B C 12 B A 52 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog100 hydrog ? ? B C 12 O2 ? ? ? 1_555 B A 53 N6 ? ? B C 12 B A 53 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog101 hydrog ? ? B A 13 N1 ? ? ? 1_555 B U 31 N3 ? ? B A 13 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B A 13 N6 ? ? ? 1_555 B U 31 O4 ? ? B A 13 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 14 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 14 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 14 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 16 N1 ? ? ? 1_555 B C 28 N3 ? ? B G 16 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 16 N2 ? ? ? 1_555 B C 28 O2 ? ? B G 16 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B G 16 O6 ? ? ? 1_555 B C 28 N4 ? ? B G 16 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 27 N3 ? ? B G 17 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 27 O2 ? ? B G 17 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 27 N4 ? ? B G 17 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 26 N3 ? ? B A 18 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 26 O4 ? ? B A 18 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B U 19 N3 ? ? ? 1_555 B A 46 N7 ? ? B U 19 B A 46 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog118 hydrog ? ? B U 19 O2 ? ? ? 1_555 B A 46 N6 ? ? B U 19 B A 46 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog119 hydrog ? ? B U 24 N3 ? ? ? 1_555 B A 46 N1 ? ? B U 24 B A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B U 24 O4 ? ? ? 1_555 B A 46 N6 ? ? B U 24 B A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B C 32 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B C 32 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B C 32 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 34 N2 ? ? ? 1_555 B A 53 N1 ? ? B G 34 B A 53 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog125 hydrog ? ? B A 38 N6 ? ? ? 1_555 B A 51 N3 ? ? B A 38 B A 51 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog126 hydrog ? ? B G 39 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 39 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B G 39 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 39 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B G 39 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 39 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B U 40 N3 ? ? ? 1_555 B A 49 N1 ? ? B U 40 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B U 40 O4 ? ? ? 1_555 B A 49 N6 ? ? B U 40 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B C 41 O2 ? ? ? 1_555 B G 48 N1 ? ? B C 41 B G 48 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog132 hydrog ? ? B C 42 N3 ? ? ? 1_555 B G 47 N1 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B C 42 N4 ? ? ? 1_555 B G 47 O6 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B C 42 O2 ? ? ? 1_555 B G 47 N2 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id N7 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id B _pdbx_struct_conn_angle.ptnr1_label_comp_id A _pdbx_struct_conn_angle.ptnr1_label_seq_id 18 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id B _pdbx_struct_conn_angle.ptnr1_auth_comp_id A _pdbx_struct_conn_angle.ptnr1_auth_seq_id 18 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id N _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id B _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 73 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id N6 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id A _pdbx_struct_conn_angle.ptnr3_label_seq_id 18 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id B _pdbx_struct_conn_angle.ptnr3_auth_comp_id A _pdbx_struct_conn_angle.ptnr3_auth_seq_id 18 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 111.1 _pdbx_struct_conn_angle.value_esd ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC2 Software B MG 70 ? 1 'BINDING SITE FOR RESIDUE MG B 70' AC3 Software A MG 72 ? 2 'BINDING SITE FOR RESIDUE MG A 72' AC4 Software A MG 73 ? 1 'BINDING SITE FOR RESIDUE MG A 73' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC2 1 HOH T . ? HOH B 134 . ? 1_555 ? 2 AC3 2 HOH S . ? HOH A 102 . ? 1_555 ? 3 AC3 2 HOH S . ? HOH A 146 . ? 1_555 ? 4 AC4 1 HOH S . ? HOH A 91 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O3G B GTP 1 ? ? O B HOH 90 ? ? 1.84 2 1 O2B B GTP 1 ? ? O B HOH 105 ? ? 2.14 3 1 OP2 A A 53 ? ? O A HOH 78 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A GTP 1 ? ? P A G 2 ? ? OP2 A G 2 ? ? 118.88 110.50 8.38 1.10 Y 2 1 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.74 108.50 4.24 0.70 N 3 1 "O3'" A G 2 ? ? P A G 3 ? ? "O5'" A G 3 ? ? 88.75 104.00 -15.25 1.90 Y 4 1 "O3'" A G 2 ? ? P A G 3 ? ? OP2 A G 3 ? ? 87.15 105.20 -18.05 2.20 Y 5 1 "O3'" A G 2 ? ? P A G 3 ? ? OP1 A G 3 ? ? 83.30 105.20 -21.90 2.20 Y 6 1 OP1 A G 3 ? ? P A G 3 ? ? OP2 A G 3 ? ? 131.99 119.60 12.39 1.50 N 7 1 "O5'" A G 3 ? ? "C5'" A G 3 ? ? "C4'" A G 3 ? ? 104.43 109.40 -4.97 0.80 N 8 1 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 122.90 118.90 4.00 0.60 N 9 1 "C3'" A U 19 ? ? "C2'" A U 19 ? ? "C1'" A U 19 ? ? 93.81 101.30 -7.49 0.70 N 10 1 "O4'" A U 19 ? ? "C1'" A U 19 ? ? N1 A U 19 ? ? 114.42 108.50 5.92 0.70 N 11 1 "C3'" A U 19 ? ? "O3'" A U 19 ? ? P A G 20 ? ? 127.79 119.70 8.09 1.20 Y 12 1 "C3'" A U 25 ? ? "O3'" A U 25 ? ? P A U 26 ? ? 126.90 119.70 7.20 1.20 Y 13 1 "O4'" A U 33 ? ? "C4'" A U 33 ? ? "C3'" A U 33 ? ? 95.60 104.00 -8.40 1.00 N 14 1 "C3'" A U 33 ? ? "C2'" A U 33 ? ? "C1'" A U 33 ? ? 92.90 101.30 -8.40 0.70 N 15 1 "O4'" A U 33 ? ? "C1'" A U 33 ? ? N1 A U 33 ? ? 113.05 108.50 4.55 0.70 N 16 1 "C3'" A U 33 ? ? "O3'" A U 33 ? ? P A G 34 ? ? 130.55 119.70 10.85 1.20 Y 17 1 "C4'" A C 42 ? ? "C3'" A C 42 ? ? "C2'" A C 42 ? ? 95.72 102.60 -6.88 1.00 N 18 1 "O4'" A A 46 ? ? "C1'" A A 46 ? ? N9 A A 46 ? ? 113.30 108.50 4.80 0.70 N 19 1 "O4'" A A 49 ? ? "C1'" A A 49 ? ? N9 A A 49 ? ? 113.83 108.50 5.33 0.70 N 20 1 "O4'" A A 51 ? ? "C1'" A A 51 ? ? N9 A A 51 ? ? 115.76 108.50 7.26 0.70 N 21 1 "C3'" A A 53 ? ? "C2'" A A 53 ? ? "C1'" A A 53 ? ? 96.48 101.30 -4.82 0.70 N 22 1 "O4'" A A 67 ? ? "C1'" A A 67 ? ? N9 A A 67 ? ? 113.05 108.50 4.55 0.70 N 23 1 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.94 108.50 4.44 0.70 N 24 1 "O3'" B GTP 1 ? ? P B G 2 ? ? OP2 B G 2 ? ? 131.20 110.50 20.70 1.10 Y 25 1 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 113.64 108.50 5.14 0.70 N 26 1 "C4'" B C 7 ? ? "C3'" B C 7 ? ? "C2'" B C 7 ? ? 96.45 102.60 -6.15 1.00 N 27 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 115.44 108.50 6.94 0.70 N 28 1 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 114.44 118.60 -4.16 0.60 N 29 1 "C1'" B G 20 ? ? "O4'" B G 20 ? ? "C4'" B G 20 ? ? 99.65 109.70 -10.05 0.70 N 30 1 N9 B G 20 ? ? "C1'" B G 20 ? ? "C2'" B G 20 ? ? 122.20 114.00 8.20 1.30 N 31 1 "O4'" B G 20 ? ? "C1'" B G 20 ? ? N9 B G 20 ? ? 113.78 108.50 5.28 0.70 N 32 1 "C3'" B G 22 ? ? "O3'" B G 22 ? ? P B C 23 ? ? 127.02 119.70 7.32 1.20 Y 33 1 "C3'" B C 23 ? ? "O3'" B C 23 ? ? P B U 24 ? ? 130.25 119.70 10.55 1.20 Y 34 1 "O4'" B C 27 ? ? "C1'" B C 27 ? ? N1 B C 27 ? ? 113.26 108.50 4.76 0.70 N 35 1 "O4'" B U 44 ? ? "C1'" B U 44 ? ? N1 B U 44 ? ? 113.05 108.50 4.55 0.70 N 36 1 "C1'" B A 46 ? ? "O4'" B A 46 ? ? "C4'" B A 46 ? ? 104.79 109.70 -4.91 0.70 N 37 1 "O4'" B A 46 ? ? "C1'" B A 46 ? ? N9 B A 46 ? ? 113.13 108.50 4.63 0.70 N 38 1 "O4'" B U 68 ? ? "C1'" B U 68 ? ? N1 B U 68 ? ? 112.84 108.50 4.34 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 A GTP 1 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 B GTP 1 B GTP 1 ? G "GUANOSINE-5'-TRIPHOSPHATE" # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -5.6144 -7.6319 7.3737 -0.0130 -0.0677 -0.0472 0.0614 -0.0428 -0.0039 0.1948 0.5630 2.2840 0.1881 -0.2180 0.1557 -0.0240 0.0249 -0.0009 -0.0266 0.0467 -0.0788 -0.0038 -0.2491 0.0312 'X-RAY DIFFRACTION' 2 ? refined 7.2385 -28.8036 17.1906 0.0116 -0.0221 -0.0384 0.0341 0.0183 -0.0453 0.0469 0.5336 3.7554 0.0411 0.4139 0.1345 -0.0993 -0.0931 0.1924 0.0321 0.0924 -0.0887 0.0475 0.2935 -0.2094 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 69 ? A 1 A 69 'X-RAY DIFFRACTION' ? 2 2 B 1 B 69 ? B 1 B 69 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 MG MG MG N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2QUS 'double helix' 2QUS 'a-form double helix' 2QUS 'hairpin loop' 2QUS 'bulge loop' 2QUS 'mismatched base pair' 2QUS 'internal loop' 2QUS 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A C 64 1_555 0.059 -0.023 -0.095 -10.535 -9.871 0.646 1 A_GTP1:C64_A A 1 ? A 64 ? 19 1 1 A G 2 1_555 A C 63 1_555 0.129 -0.219 -0.076 -5.800 -6.138 1.422 2 A_G2:C63_A A 2 ? A 63 ? 19 1 1 A G 3 1_555 A C 62 1_555 -0.395 -0.410 -0.247 -7.083 -8.853 -5.240 3 A_G3:C62_A A 3 ? A 62 ? 19 1 1 A A 4 1_555 A U 61 1_555 0.129 -0.043 0.173 -2.402 -6.171 0.916 4 A_A4:U61_A A 4 ? A 61 ? 20 1 1 A G 5 1_555 A C 60 1_555 -0.376 -0.235 0.439 9.366 -10.253 -0.898 5 A_G5:C60_A A 5 ? A 60 ? 19 1 1 A C 6 1_555 A G 59 1_555 0.000 -0.281 0.053 9.580 -12.195 -3.125 6 A_C6:G59_A A 6 ? A 59 ? 19 1 1 A C 7 1_555 A G 58 1_555 0.318 -0.078 -0.250 8.189 -6.908 1.168 7 A_C7:G58_A A 7 ? A 58 ? 19 1 1 A C 8 1_555 A G 57 1_555 -0.380 -0.203 -0.046 -8.329 -10.186 0.744 8 A_C8:G57_A A 8 ? A 57 ? 19 1 1 A U 9 1_555 A A 56 1_555 0.213 -0.561 0.120 -7.438 -5.892 2.003 9 A_U9:A56_A A 9 ? A 56 ? 20 1 1 A G 10 1_555 A C 55 1_555 -0.938 -0.065 0.079 -6.215 -13.638 9.035 10 A_G10:C55_A A 10 ? A 55 ? 19 1 1 A U 11 1_555 A A 54 1_555 0.174 -0.209 0.617 -6.561 0.157 -1.083 11 A_U11:A54_A A 11 ? A 54 ? 20 1 1 A C 12 1_555 A A 53 1_555 5.092 -1.217 1.646 12.610 11.115 4.384 12 A_C12:A53_A A 12 ? A 53 ? ? ? 1 A A 38 1_555 A A 51 1_555 -6.614 -1.334 1.315 -5.980 10.201 22.063 13 A_A38:A51_A A 38 ? A 51 ? ? ? 1 A G 39 1_555 A C 50 1_555 -0.717 0.020 0.256 7.135 -2.370 6.826 14 A_G39:C50_A A 39 ? A 50 ? 19 1 1 A U 40 1_555 A A 49 1_555 0.207 -0.203 -0.142 12.942 -10.111 1.799 15 A_U40:A49_A A 40 ? A 49 ? 20 1 1 A C 41 1_555 A G 48 1_555 0.363 -0.099 -0.405 14.147 -7.103 -1.193 16 A_C41:G48_A A 41 ? A 48 ? 19 1 1 A C 42 1_555 A G 47 1_555 0.645 -0.180 -0.477 1.576 -6.697 6.654 17 A_C42:G47_A A 42 ? A 47 ? 19 1 1 A G 20 1_555 A U 21 1_555 7.943 2.049 0.069 0.404 4.128 18.630 18 A_G20:U21_A A 20 ? A 21 ? ? 9 1 A U 24 1_555 A A 46 1_555 -0.601 0.012 0.454 -17.585 3.202 7.457 19 A_U24:A46_A A 24 ? A 46 ? 20 1 1 A A 18 1_555 A U 26 1_555 -0.038 -0.204 -0.051 -18.512 -11.053 -1.198 20 A_A18:U26_A A 18 ? A 26 ? 20 1 1 A G 17 1_555 A C 27 1_555 -0.206 -0.335 -0.406 -15.175 -19.508 -2.079 21 A_G17:C27_A A 17 ? A 27 ? 19 1 1 A G 16 1_555 A C 28 1_555 -0.291 -0.245 0.134 -0.509 -13.630 0.308 22 A_G16:C28_A A 16 ? A 28 ? 19 1 1 A C 15 1_555 A G 29 1_555 0.230 -0.325 -0.021 5.186 -7.867 -2.032 23 A_C15:G29_A A 15 ? A 29 ? 19 1 1 A C 14 1_555 A G 30 1_555 0.428 -0.337 -0.021 8.606 -13.135 -0.883 24 A_C14:G30_A A 14 ? A 30 ? 19 1 1 A A 13 1_555 A U 31 1_555 -0.063 -0.104 0.427 5.689 -13.238 7.167 25 A_A13:U31_A A 13 ? A 31 ? 20 1 1 A C 32 1_555 A G 37 1_555 0.596 -0.303 -0.011 6.181 5.596 -1.039 26 A_C32:G37_A A 32 ? A 37 ? 19 1 1 B GTP 1 1_555 B C 64 1_555 -0.833 -0.399 -0.045 -7.955 -12.009 2.485 27 B_GTP1:C64_B B 1 ? B 64 ? 19 1 1 B G 2 1_555 B C 63 1_555 -0.217 -0.219 -0.302 -8.561 -3.667 -1.965 28 B_G2:C63_B B 2 ? B 63 ? 19 1 1 B G 3 1_555 B C 62 1_555 -0.372 -0.185 0.083 -4.021 -7.351 -0.586 29 B_G3:C62_B B 3 ? B 62 ? 19 1 1 B A 4 1_555 B U 61 1_555 -0.302 -0.268 -0.109 -2.988 -12.222 5.403 30 B_A4:U61_B B 4 ? B 61 ? 20 1 1 B G 5 1_555 B C 60 1_555 0.009 -0.242 -0.099 -8.581 -8.265 -0.248 31 B_G5:C60_B B 5 ? B 60 ? 19 1 1 B C 6 1_555 B G 59 1_555 -0.206 -0.235 -0.398 4.708 -5.871 -1.001 32 B_C6:G59_B B 6 ? B 59 ? 19 1 1 B C 7 1_555 B G 58 1_555 -0.023 -0.167 -0.497 16.581 -8.776 0.712 33 B_C7:G58_B B 7 ? B 58 ? 19 1 1 B C 8 1_555 B G 57 1_555 -0.050 -0.383 -0.730 8.753 -11.454 -2.577 34 B_C8:G57_B B 8 ? B 57 ? 19 1 1 B U 9 1_555 B A 56 1_555 -0.281 -0.109 -0.432 -1.801 -15.112 6.131 35 B_U9:A56_B B 9 ? B 56 ? 20 1 1 B G 10 1_555 B C 55 1_555 -0.133 -0.055 -0.127 -12.346 -13.930 6.366 36 B_G10:C55_B B 10 ? B 55 ? 19 1 1 B U 11 1_555 B A 54 1_555 -0.029 -0.045 0.277 2.912 -5.072 2.704 37 B_U11:A54_B B 11 ? B 54 ? 20 1 1 B G 34 1_555 B A 53 1_555 3.675 3.905 0.511 -45.578 -43.887 84.460 38 B_G34:A53_B B 34 ? B 53 ? ? ? 1 B C 12 1_555 B A 52 1_555 5.803 -2.858 -0.977 20.042 5.668 -45.334 39 B_C12:A52_B B 12 ? B 52 ? ? ? 1 B A 38 1_555 B A 51 1_555 -6.387 -1.219 0.372 -1.076 -10.521 42.284 40 B_A38:A51_B B 38 ? B 51 ? ? 5 1 B G 39 1_555 B C 50 1_555 -0.786 -0.116 -0.524 3.785 -9.452 9.540 41 B_G39:C50_B B 39 ? B 50 ? 19 1 1 B U 40 1_555 B A 49 1_555 0.166 -0.005 -0.371 2.143 1.227 4.728 42 B_U40:A49_B B 40 ? B 49 ? 20 1 1 B C 41 1_555 B G 48 1_555 0.878 0.237 -0.310 0.216 -4.020 10.886 43 B_C41:G48_B B 41 ? B 48 ? ? 1 1 B C 42 1_555 B G 47 1_555 0.519 -0.264 -0.212 -3.590 -2.248 -4.622 44 B_C42:G47_B B 42 ? B 47 ? 19 1 1 B U 24 1_555 B A 46 1_555 -0.462 -0.168 0.332 -16.531 0.481 6.755 45 B_U24:A46_B B 24 ? B 46 ? 20 1 1 B A 18 1_555 B U 26 1_555 -1.057 -0.408 -0.253 -12.653 -9.141 -7.831 46 B_A18:U26_B B 18 ? B 26 ? 20 1 1 B G 17 1_555 B C 27 1_555 -0.229 -0.246 0.278 0.622 -11.131 1.344 47 B_G17:C27_B B 17 ? B 27 ? 19 1 1 B G 16 1_555 B C 28 1_555 -0.494 -0.107 0.023 -2.833 -6.324 3.593 48 B_G16:C28_B B 16 ? B 28 ? 19 1 1 B C 15 1_555 B G 29 1_555 -0.190 -0.335 -0.390 9.498 -15.540 -2.677 49 B_C15:G29_B B 15 ? B 29 ? 19 1 1 B C 14 1_555 B G 30 1_555 0.215 -0.040 0.199 11.570 -17.968 3.047 50 B_C14:G30_B B 14 ? B 30 ? 19 1 1 B A 13 1_555 B U 31 1_555 -0.224 -0.388 0.053 2.826 -15.404 2.118 51 B_A13:U31_B B 13 ? B 31 ? 20 1 1 B C 32 1_555 B G 37 1_555 0.526 -0.338 0.020 8.083 1.243 -1.987 52 B_C32:G37_B B 32 ? B 37 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A C 64 1_555 A G 2 1_555 A C 63 1_555 -0.262 -1.706 3.149 0.039 5.340 32.468 -3.854 0.469 2.840 9.470 -0.069 32.893 1 AA_GTP1G2:C63C64_AA A 1 ? A 64 ? A 2 ? A 63 ? 1 A G 2 1_555 A C 63 1_555 A G 3 1_555 A C 62 1_555 0.617 -2.197 3.311 2.692 7.021 22.784 -7.389 -0.681 2.582 17.182 -6.587 23.977 2 AA_G2G3:C62C63_AA A 2 ? A 63 ? A 3 ? A 62 ? 1 A G 3 1_555 A C 62 1_555 A A 4 1_555 A U 61 1_555 -0.632 -2.077 3.115 -5.484 1.367 30.455 -4.143 0.171 3.085 2.575 10.329 30.962 3 AA_G3A4:U61C62_AA A 3 ? A 62 ? A 4 ? A 61 ? 1 A A 4 1_555 A U 61 1_555 A G 5 1_555 A C 60 1_555 -0.580 -1.652 2.748 -4.642 4.838 31.354 -3.704 0.368 2.529 8.826 8.468 32.046 4 AA_A4G5:C60U61_AA A 4 ? A 61 ? A 5 ? A 60 ? 1 A G 5 1_555 A C 60 1_555 A C 6 1_555 A G 59 1_555 -0.075 -1.521 3.210 1.363 4.378 32.050 -3.462 0.362 2.976 7.879 -2.453 32.368 5 AA_G5C6:G59C60_AA A 5 ? A 60 ? A 6 ? A 59 ? 1 A C 6 1_555 A G 59 1_555 A C 7 1_555 A G 58 1_555 0.192 -1.669 3.268 2.096 7.168 33.708 -3.870 -0.015 2.869 12.177 -3.560 34.502 6 AA_C6C7:G58G59_AA A 6 ? A 59 ? A 7 ? A 58 ? 1 A C 7 1_555 A G 58 1_555 A C 8 1_555 A G 57 1_555 -0.208 -2.213 3.455 -0.283 16.345 28.529 -6.409 0.325 1.937 30.235 0.524 32.797 7 AA_C7C8:G57G58_AA A 7 ? A 58 ? A 8 ? A 57 ? 1 A C 8 1_555 A G 57 1_555 A U 9 1_555 A A 56 1_555 0.281 -1.245 3.223 -2.286 7.354 32.721 -3.289 -0.840 2.858 12.834 3.990 33.591 8 AA_C8U9:A56G57_AA A 8 ? A 57 ? A 9 ? A 56 ? 1 A U 9 1_555 A A 56 1_555 A G 10 1_555 A C 55 1_555 0.463 -1.204 3.132 2.906 10.343 26.496 -4.557 -0.343 2.528 21.478 -6.035 28.555 9 AA_U9G10:C55A56_AA A 9 ? A 56 ? A 10 ? A 55 ? 1 A G 10 1_555 A C 55 1_555 A U 11 1_555 A A 54 1_555 -0.557 -1.115 3.467 -4.367 10.488 34.440 -3.302 0.268 3.055 17.144 7.138 36.212 10 AA_G10U11:A54C55_AA A 10 ? A 55 ? A 11 ? A 54 ? 1 A U 11 1_555 A A 54 1_555 A C 12 1_555 A A 53 1_555 0.334 -0.388 2.956 1.095 19.419 45.274 -1.769 -0.329 2.601 23.964 -1.351 49.073 11 AA_U11C12:A53A54_AA A 11 ? A 54 ? A 12 ? A 53 ? 1 A C 12 1_555 A A 53 1_555 A A 38 1_555 A A 51 1_555 0.870 0.279 5.569 -2.872 1.642 51.701 0.132 -1.324 5.522 1.880 3.289 51.800 12 AA_C12A38:A51A53_AA A 12 ? A 53 ? A 38 ? A 51 ? 1 A A 38 1_555 A A 51 1_555 A G 39 1_555 A C 50 1_555 -1.023 0.131 3.078 1.110 11.616 47.704 -0.670 1.312 3.007 14.118 -1.348 49.030 13 AA_A38G39:C50A51_AA A 38 ? A 51 ? A 39 ? A 50 ? 1 A G 39 1_555 A C 50 1_555 A U 40 1_555 A A 49 1_555 -0.753 -1.816 3.152 0.959 10.577 31.197 -4.781 1.473 2.401 18.991 -1.722 32.913 14 AA_G39U40:A49C50_AA A 39 ? A 50 ? A 40 ? A 49 ? 1 A U 40 1_555 A A 49 1_555 A C 41 1_555 A G 48 1_555 0.249 -1.706 3.197 0.760 5.894 30.551 -4.229 -0.329 2.831 11.055 -1.426 31.110 15 AA_U40C41:G48A49_AA A 40 ? A 49 ? A 41 ? A 48 ? 1 A C 41 1_555 A G 48 1_555 A C 42 1_555 A G 47 1_555 0.491 -2.253 3.587 3.415 7.795 30.138 -5.682 -0.252 2.963 14.629 -6.408 31.290 16 AA_C41C42:G47G48_AA A 41 ? A 48 ? A 42 ? A 47 ? 1 A U 24 1_555 A A 46 1_555 A A 18 1_555 A U 26 1_555 4.120 0.694 -3.614 -5.003 9.277 -135.451 -0.311 2.259 -3.561 -5.010 -2.702 -135.649 17 AA_U24A18:U26A46_AA A 24 ? A 46 ? A 18 ? A 26 ? 1 A A 18 1_555 A U 26 1_555 A G 17 1_555 A C 27 1_555 -0.180 1.816 -3.303 -0.150 -4.379 -31.089 -4.156 -0.305 -3.026 8.119 -0.278 -31.389 18 AA_A18G17:C27U26_AA A 18 ? A 26 ? A 17 ? A 27 ? 1 A G 17 1_555 A C 27 1_555 A G 16 1_555 A C 28 1_555 -0.144 2.012 -3.657 -1.659 -12.467 -33.196 -5.162 0.010 -2.751 20.911 -2.783 -35.436 19 AA_G17G16:C28C27_AA A 17 ? A 27 ? A 16 ? A 28 ? 1 A G 16 1_555 A C 28 1_555 A C 15 1_555 A G 29 1_555 -0.196 1.815 -3.296 -0.488 -12.012 -27.228 -5.798 -0.291 -2.309 24.081 -0.977 -29.718 20 AA_G16C15:G29C28_AA A 16 ? A 28 ? A 15 ? A 29 ? 1 A C 15 1_555 A G 29 1_555 A C 14 1_555 A G 30 1_555 0.179 1.441 -3.282 0.747 -9.720 -33.114 -3.857 0.192 -2.764 16.612 1.277 -34.480 21 AA_C15C14:G30G29_AA A 15 ? A 29 ? A 14 ? A 30 ? 1 A C 14 1_555 A G 30 1_555 A A 13 1_555 A U 31 1_555 0.454 0.982 -3.237 -2.414 -8.760 -31.578 -3.160 1.196 -2.830 15.694 -4.325 -32.827 22 AA_C14A13:U31G30_AA A 14 ? A 30 ? A 13 ? A 31 ? 1 A A 13 1_555 A U 31 1_555 A C 32 1_555 A G 37 1_555 -1.674 3.159 -1.189 -159.924 25.031 -153.024 -1.555 -0.674 -1.650 -12.553 -80.205 -175.788 23 AA_A13C32:G37U31_AA A 13 ? A 31 ? A 32 ? A 37 ? 1 B GTP 1 1_555 B C 64 1_555 B G 2 1_555 B C 63 1_555 -0.259 -1.391 3.198 0.348 11.285 35.630 -3.540 0.446 2.648 17.897 -0.552 37.321 24 BB_GTP1G2:C63C64_BB B 1 ? B 64 ? B 2 ? B 63 ? 1 B G 2 1_555 B C 63 1_555 B G 3 1_555 B C 62 1_555 0.958 -2.288 3.142 -0.269 6.615 25.328 -6.619 -2.179 2.465 14.768 0.600 26.165 25 BB_G2G3:C62C63_BB B 2 ? B 63 ? B 3 ? B 62 ? 1 B G 3 1_555 B C 62 1_555 B A 4 1_555 B U 61 1_555 0.001 -1.774 3.226 1.187 4.372 31.387 -4.011 0.206 2.956 8.028 -2.180 31.704 26 BB_G3A4:U61C62_BB B 3 ? B 62 ? B 4 ? B 61 ? 1 B A 4 1_555 B U 61 1_555 B G 5 1_555 B C 60 1_555 -0.872 -1.647 3.274 -3.369 11.398 34.376 -4.136 0.958 2.682 18.610 5.500 36.314 27 BB_A4G5:C60U61_BB B 4 ? B 61 ? B 5 ? B 60 ? 1 B G 5 1_555 B C 60 1_555 B C 6 1_555 B G 59 1_555 -0.273 -1.311 3.004 2.861 6.992 27.224 -4.096 1.135 2.553 14.503 -5.935 28.234 28 BB_G5C6:G59C60_BB B 5 ? B 60 ? B 6 ? B 59 ? 1 B C 6 1_555 B G 59 1_555 B C 7 1_555 B G 58 1_555 1.353 -1.872 2.902 2.212 10.425 27.436 -5.484 -2.286 2.161 21.003 -4.456 29.396 29 BB_C6C7:G58G59_BB B 6 ? B 59 ? B 7 ? B 58 ? 1 B C 7 1_555 B G 58 1_555 B C 8 1_555 B G 57 1_555 -0.204 -1.828 3.289 1.865 17.473 30.598 -5.278 0.579 1.975 30.188 -3.223 35.180 30 BB_C7C8:G57G58_BB B 7 ? B 58 ? B 8 ? B 57 ? 1 B C 8 1_555 B G 57 1_555 B U 9 1_555 B A 56 1_555 0.006 -1.642 3.626 -2.202 9.211 29.884 -4.845 -0.441 2.992 17.322 4.140 31.316 31 BB_C8U9:A56G57_BB B 8 ? B 57 ? B 9 ? B 56 ? 1 B U 9 1_555 B A 56 1_555 B G 10 1_555 B C 55 1_555 -0.087 -1.556 3.609 -3.503 12.715 30.978 -4.808 -0.433 2.768 22.567 6.218 33.605 32 BB_U9G10:C55A56_BB B 9 ? B 56 ? B 10 ? B 55 ? 1 B G 10 1_555 B C 55 1_555 B U 11 1_555 B A 54 1_555 -0.145 -1.028 2.874 -3.359 9.333 29.889 -3.356 -0.257 2.452 17.499 6.299 31.456 33 BB_G10U11:A54C55_BB B 10 ? B 55 ? B 11 ? B 54 ? 1 B U 11 1_555 B A 54 1_555 B G 34 1_555 B A 53 1_555 -0.941 2.733 3.705 -1.993 -19.107 84.078 2.467 0.643 3.167 -14.107 1.471 85.845 34 BB_U11G34:A53A54_BB B 11 ? B 54 ? B 34 ? B 53 ? 1 B G 34 1_555 B A 53 1_555 B C 12 1_555 B A 52 1_555 -0.489 -4.086 1.610 24.551 31.940 -14.394 1.441 2.536 3.875 -56.404 43.356 -42.679 35 BB_G34C12:A52A53_BB B 34 ? B 53 ? B 12 ? B 52 ? 1 B C 12 1_555 B A 52 1_555 B A 38 1_555 B A 51 1_555 1.770 -0.569 3.840 -6.911 6.863 29.903 -2.463 -4.691 3.157 12.878 12.967 31.414 36 BB_C12A38:A51A52_BB B 12 ? B 52 ? B 38 ? B 51 ? 1 B A 38 1_555 B A 51 1_555 B G 39 1_555 B C 50 1_555 -2.035 -0.101 3.204 2.180 7.113 48.059 -0.651 2.634 3.070 8.673 -2.658 48.597 37 BB_A38G39:C50A51_BB B 38 ? B 51 ? B 39 ? B 50 ? 1 B G 39 1_555 B C 50 1_555 B U 40 1_555 B A 49 1_555 -0.868 -1.882 3.301 -4.244 6.188 30.934 -4.534 0.830 2.968 11.393 7.814 31.809 38 BB_G39U40:A49C50_BB B 39 ? B 50 ? B 40 ? B 49 ? 1 B U 40 1_555 B A 49 1_555 B C 41 1_555 B G 48 1_555 0.864 -1.770 3.346 1.428 6.925 32.857 -4.168 -1.268 2.956 12.069 -2.488 33.589 39 BB_U40C41:G48A49_BB B 40 ? B 49 ? B 41 ? B 48 ? 1 B C 41 1_555 B G 48 1_555 B C 42 1_555 B G 47 1_555 -0.367 -2.030 3.231 1.147 8.878 28.510 -5.591 0.925 2.483 17.491 -2.260 29.854 40 BB_C41C42:G47G48_BB B 41 ? B 48 ? B 42 ? B 47 ? 1 B U 24 1_555 B A 46 1_555 B A 18 1_555 B U 26 1_555 3.981 1.176 -3.574 -1.660 6.613 -138.821 -0.586 2.136 -3.577 -3.532 -0.886 -138.898 41 BB_U24A18:U26A46_BB B 24 ? B 46 ? B 18 ? B 26 ? 1 B A 18 1_555 B U 26 1_555 B G 17 1_555 B C 27 1_555 0.398 2.298 -3.494 -2.623 -5.684 -27.178 -6.116 1.448 -2.912 11.895 -5.490 -27.876 42 BB_A18G17:C27U26_BB B 18 ? B 26 ? B 17 ? B 27 ? 1 B G 17 1_555 B C 27 1_555 B G 16 1_555 B C 28 1_555 -0.518 1.988 -3.088 1.251 -5.703 -33.023 -4.282 -1.082 -2.696 9.936 2.179 -33.521 43 BB_G17G16:C28C27_BB B 17 ? B 27 ? B 16 ? B 28 ? 1 B G 16 1_555 B C 28 1_555 B C 15 1_555 B G 29 1_555 -0.431 1.591 -3.437 3.428 -16.179 -29.829 -5.119 -1.245 -2.242 28.812 6.106 -34.016 44 BB_G16C15:G29C28_BB B 16 ? B 28 ? B 15 ? B 29 ? 1 B C 15 1_555 B G 29 1_555 B C 14 1_555 B G 30 1_555 0.634 1.549 -3.280 -3.080 -9.167 -28.381 -4.742 1.813 -2.584 18.046 -6.063 -29.951 45 BB_C15C14:G30G29_BB B 15 ? B 29 ? B 14 ? B 30 ? 1 B C 14 1_555 B G 30 1_555 B A 13 1_555 B U 31 1_555 -0.011 1.059 -3.075 1.993 -2.640 -35.215 -2.105 -0.290 -2.985 4.352 3.285 -35.365 46 BB_C14A13:U31G30_BB B 14 ? B 30 ? B 13 ? B 31 ? 1 B A 13 1_555 B U 31 1_555 B C 32 1_555 B G 37 1_555 -1.402 3.225 -1.373 -159.331 25.244 -168.932 -1.602 -0.633 -1.547 -12.628 -79.708 -178.206 47 BB_A13C32:G37U31_BB B 13 ? B 31 ? B 32 ? B 37 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'small helical fragments' # _atom_sites.entry_id 2QUS _atom_sites.fract_transf_matrix[1][1] 0.035809 _atom_sites.fract_transf_matrix[1][2] -0.009188 _atom_sites.fract_transf_matrix[1][3] -0.003337 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019468 _atom_sites.fract_transf_matrix[2][3] -0.004789 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014474 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_