data_2RN1 # _entry.id 2RN1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RN1 pdb_00002rn1 10.2210/pdb2rn1/pdb RCSB RCSB150051 ? ? BMRB 11014 ? 10.13018/BMR11014 WWPDB D_1000150051 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RN1 _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-12-05 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 1KIS PDB 'Lower affinity aptamer - HIV TAR kissing complex' unspecified 11014 BMRB . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Van Melckebeke, H.' 1 'Devany, M.' 2 'Di Primo, C.' 3 'Beaurain, F.' 4 'Toulme, J.' 5 'Bryce, D.L.' 6 'Boisbouvier, J.' 7 # _citation.id primary _citation.title 'Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 105 _citation.page_first 9210 _citation.page_last 9215 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18607001 _citation.pdbx_database_id_DOI 10.1073/pnas.0712121105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Van Melckebeke, H.' 1 ? primary 'Devany, M.' 2 ? primary 'Di Primo, C.' 3 ? primary 'Beaurain, F.' 4 ? primary 'Bryce, D.L.' 5 ? primary 'Boisbouvier, J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(P*GP*AP*GP*CP*CP*CP*UP*GP*GP*GP*AP*GP*GP*CP*UP*C)-3') ; 5168.135 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(P*GP*CP*UP*GP*GP*UP*CP*CP*CP*AP*GP*AP*CP*AP*GP*C)-3') ; 5112.111 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 TAR 2 TAR*GA # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAGCCCUGGGAGGCUC GAGCCCUGGGAGGCUC A ? 2 polyribonucleotide no no GCUGGUCCCAGACAGC GCUGGUCCCAGACAGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 G n 1 4 C n 1 5 C n 1 6 C n 1 7 U n 1 8 G n 1 9 G n 1 10 G n 1 11 A n 1 12 G n 1 13 G n 1 14 C n 1 15 U n 1 16 C n 2 1 G n 2 2 C n 2 3 U n 2 4 G n 2 5 G n 2 6 U n 2 7 C n 2 8 C n 2 9 C n 2 10 A n 2 11 G n 2 12 A n 2 13 C n 2 14 A n 2 15 G n 2 16 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Nucleotide synthesis' 2 1 sample ? ? ? ? ? 'Nucleotide synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 C 16 16 16 C C A . n B 2 1 G 1 17 17 G G B . n B 2 2 C 2 18 18 C C B . n B 2 3 U 3 19 19 U U B . n B 2 4 G 4 20 20 G G B . n B 2 5 G 5 21 21 G G B . n B 2 6 U 6 22 22 U U B . n B 2 7 C 7 23 23 C C B . n B 2 8 C 8 24 24 C C B . n B 2 9 C 9 25 25 C C B . n B 2 10 A 10 26 26 A A B . n B 2 11 G 11 27 27 G G B . n B 2 12 A 12 28 28 A A B . n B 2 13 C 13 29 29 C C B . n B 2 14 A 14 30 30 A A B . n B 2 15 G 15 31 31 G G B . n B 2 16 C 16 32 32 C C B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RN1 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RN1 _struct.title ;Liquid crystal solution structure of the kissing complex formed by the apical loop of the HIV TAR RNA and a high affinity RNA aptamer optimized by SELEX ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RN1 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA kissing complex, HIV TAR, High affinity RNA aptamer selected by SELEX, Liquid crystal NMR, GA base pair, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_code _struct_ref.db_name _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 2RN1 PDB 1 2RN1 1 GAGCCCUGGGAGGCUC ? 2 2RN1 PDB 2 2RN1 1 GCUGGUCCCAGACAGC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RN1 A 1 ? 16 ? 2RN1 1 ? 16 ? 1 16 2 2 2RN1 B 1 ? 16 ? 2RN1 17 ? 32 ? 17 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A U 15 O4 ? ? A G 1 A U 15 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog2 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 15 N3 ? ? A A 2 A U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 15 O4 ? ? A A 2 A U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 3 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 3 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 3 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 4 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 4 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 4 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 4 N4 ? ? ? 1_555 A C 14 N3 ? ? A C 4 A C 14 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog14 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 12 N1 ? ? A C 5 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 12 O6 ? ? A C 5 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 12 N2 ? ? A C 5 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 5 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 5 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 5 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 8 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 8 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 8 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 9 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 9 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 9 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 10 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 10 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 10 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 11 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 11 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 17 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 17 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 17 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 15 N1 ? ? B C 18 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 15 O6 ? ? B C 18 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 15 N2 ? ? B C 18 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 14 N1 ? ? B U 19 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 14 N6 ? ? B U 19 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 13 N3 ? ? B G 20 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 13 O2 ? ? B G 20 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 13 N4 ? ? B G 20 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 4 N1 ? ? ? 1_555 B A 14 N1 ? ? B G 20 B A 30 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog48 hydrog ? ? B G 4 O6 ? ? ? 1_555 B A 14 N6 ? ? B G 20 B A 30 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog49 hydrog ? ? B G 5 N1 ? ? ? 1_555 B A 12 N1 ? ? B G 21 B A 28 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog50 hydrog ? ? B G 5 O6 ? ? ? 1_555 B A 12 N6 ? ? B G 21 B A 28 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.34 104.00 -6.66 1.00 N 2 2 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.44 104.00 -6.56 1.00 N 3 3 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.94 104.00 -6.06 1.00 N 4 4 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.36 104.00 -6.64 1.00 N 5 5 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.75 104.00 -6.25 1.00 N 6 6 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.52 104.00 -6.48 1.00 N 7 7 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.71 104.00 -6.29 1.00 N 8 8 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.47 104.00 -6.53 1.00 N 9 9 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.61 104.00 -6.39 1.00 N 10 10 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.84 104.00 -6.16 1.00 N 11 11 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.52 104.00 -6.48 1.00 N 12 12 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.34 104.00 -6.66 1.00 N 13 13 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.52 104.00 -6.48 1.00 N 14 14 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.50 104.00 -6.50 1.00 N 15 15 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.49 104.00 -6.51 1.00 N 16 16 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.33 104.00 -6.67 1.00 N 17 17 "O4'" A A 11 ? ? "C4'" A A 11 ? ? "C3'" A A 11 ? ? 97.20 104.00 -6.80 1.00 N # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 800 _pdbx_nmr_ensemble.conformers_submitted_total_number 17 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RN1 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RN1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1.3mM TAR, 1.3mM TAR*GA, 10mM sodium phosphate, 50mM sodium chloride, 0.01mM EDTA, 0.4g/L sodium azide, 100% D2O' 1 '100% D2O' '1.1mM TAR, 1.1mM TAR*GA, 10mM sodium phosphate, 50mM sodium chloride, 0.01mM EDTA, 0.4g/L sodium azide, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' ;0.37mM [U-98% 13C; U-98% 15N] TAR, 0.74mM TAR*GA, 10mM sodium phosphate, 50mM sodium chloride, 0.01mM EDTA, 0.4g/L sodium azide, 90% H2O/10% D2O ; 3 '90% H2O/10% D2O' ;0.74mM TAR, 0.37mM [U-98% 13C; U-98% 15N] TAR*GA, 10mM sodium phosphate, 50mM sodium chloride, 0.01mM EDTA, 0.4g/L sodium azide, 90% H2O/10% D2O ; 4 '90% H2O/10% D2O' ;1.6mM TAR, 0.8mM [U-98% 13C; U-98% 15N] TAR*GA, 10mM sodium phosphate, 50mM sodium chloride, 0.01mM EDTA, 0.4g/L sodium azide, 100% D2O ; 5 '100% D2O' ;0.5mM [U-98% 13C; U-98% 15N] TAR, 1.0mM TAR*GA, 10mM sodium phosphate, 50mM sodium chloride, 0.01mM EDTA, 0.4g/L sodium azide, 100% D2O ; 6 '100% D2O' ;1.8mM TAR, 0.9mM [U-98% 13C; U-98% 15N] TAR*GA, 10mM sodium phosphate, 50mM sodium chloride, 0.01mM EDTA, 0.4g/L sodium azide, 100% D2O ; 7 '100% D2O' ;1.8mM TAR, 0.9mM [U-98% 13C; U-98% 15N] TAR*GA, 10mM sodium phosphate, 50mM sodium chloride, 0.01mM EDTA, 0.4g/L sodium azide, 100% D2O ; 8 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id TAR 1.3 mM ? 1 TAR*GA 1.3 mM ? 1 'sodium phosphate' 10 mM ? 1 'sodium chloride' 50 mM ? 1 EDTA 0.01 mM ? 1 'sodium azide' 0.4 g/L ? 1 TAR 1.1 mM ? 2 TAR*GA 1.1 mM ? 2 'sodium phosphate' 10 mM ? 2 'sodium chloride' 50 mM ? 2 EDTA 0.01 mM ? 2 'sodium azide' 0.4 g/L ? 2 TAR 0.37 mM '[U-98% 13C; U-98% 15N]' 3 TAR*GA 0.74 mM ? 3 'sodium phosphate' 10 mM ? 3 'sodium chloride' 50 mM ? 3 EDTA 0.01 mM ? 3 'sodium azide' 0.4 g/L ? 3 TAR 0.74 mM ? 4 TAR*GA 0.37 mM '[U-98% 13C; U-98% 15N]' 4 'sodium phosphate' 10 mM ? 4 'sodium chloride' 50 mM ? 4 EDTA 0.01 mM ? 4 'sodium azide' 0.4 g/L ? 4 TAR 1.6 mM ? 5 TAR*GA 0.8 mM '[U-98% 13C; U-98% 15N]' 5 'sodium phosphate' 10 mM ? 5 'sodium chloride' 50 mM ? 5 EDTA 0.01 mM ? 5 'sodium azide' 0.4 g/L ? 5 TAR 0.5 mM '[U-98% 13C; U-98% 15N]' 6 TAR*GA 1.0 mM ? 6 'sodium phosphate' 10 mM ? 6 'sodium chloride' 50 mM ? 6 EDTA 0.01 mM ? 6 'sodium azide' 0.4 g/L ? 6 TAR 1.8 mM ? 7 TAR*GA 0.9 mM '[U-98% 13C; U-98% 15N]' 7 'sodium phosphate' 10 mM ? 7 'sodium chloride' 50 mM ? 7 EDTA 0.01 mM ? 7 'sodium azide' 0.4 g/L ? 7 TAR 1.8 mM ? 8 TAR*GA 0.9 mM '[U-98% 13C; U-98% 15N]' 8 'sodium phosphate' 10 mM ? 8 'sodium chloride' 50 mM ? 8 EDTA 0.01 mM ? 8 'sodium azide' 0.4 g/L ? 8 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 60 6.6 ambient ? 298 K 2 60 6.6 ambient ? 283 K 3 60 6.6 ambient ? 278 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 2 1 2 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H NOESY' 1 3 7 '3D 1H-13C TROSY NOESY' 3 4 3 '2D JNN-COSY' 1 5 7 '3D HCCH-COSY' 1 6 8 '3D HCCH-COSY' 1 7 7 '3D HCN' 1 8 8 '3D HCN' 1 9 7 '2D intra base TOCSY' 1 10 8 '3D 1H-13C TROSY NOESY' 1 11 8 '2D intra base TOCSY' 1 12 8 '13C-1H spin state selective experiments' 1 13 7 '13C-1H spin state selective experiments' 3 14 4 '2D JNN-COSY' 1 15 5 '13C-1H spin state selective experiments' 1 16 6 '13C-1H spin state selective experiments' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2RN1 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 392 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2RN1 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Xplor-NIH (Wimberly, 1992)' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Schwieters, Kuszewski, Tjandra, Clore' 'structure solution' 'X-PLOR NIH' ? 1 'Schwieters, Kuszewski, Tjandra, Clore' refinement 'X-PLOR NIH' ? 2 'Accelrys Software Inc.' 'chemical shift assignment' Felix 2000 3 'Accelrys Software Inc.' processing Felix 2000 4 'Accelrys Software Inc.' 'data analysis' 'Insight II' ? 5 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax' processing NMRPipe ? 6 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax' 'chemical shift assignment' NMRDraw ? 7 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax' 'peak picking' NMRDraw ? 8 'Lavery, sklenar, 1989' 'data analysis' Curves 5.3 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2RN1 'double helix' 2RN1 'a-form double helix' 2RN1 'mismatched base pair' 2RN1 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 16 1_555 -0.237 -0.916 1.437 -2.966 7.672 6.555 1 A_G1:C16_A A 1 ? A 16 ? 19 1 1 A A 2 1_555 A U 15 1_555 0.248 -0.741 1.354 -4.745 -3.789 -17.518 2 A_A2:U15_A A 2 ? A 15 ? 20 1 1 A G 3 1_555 A C 14 1_555 -0.037 -0.176 -0.565 -18.570 1.411 -8.719 3 A_G3:C14_A A 3 ? A 14 ? 19 1 1 A C 4 1_555 A G 13 1_555 -0.050 -0.507 -1.052 0.383 8.987 -13.310 4 A_C4:G13_A A 4 ? A 13 ? 19 1 1 A C 5 1_555 A G 12 1_555 -0.039 -0.421 -1.176 12.735 9.217 -12.872 5 A_C5:G12_A A 5 ? A 12 ? 19 1 1 B U 6 1_555 A A 11 1_555 -0.058 -0.133 0.203 3.393 -21.395 -8.349 6 B_U22:A11_A B 22 ? A 11 ? 20 1 1 B C 7 1_555 A G 10 1_555 0.169 -0.225 -0.050 4.489 -22.769 -5.606 7 B_C23:G10_A B 23 ? A 10 ? 19 1 1 B C 8 1_555 A G 9 1_555 0.223 -0.231 -0.190 3.567 -20.115 -4.230 8 B_C24:G9_A B 24 ? A 9 ? 19 1 1 B C 9 1_555 A G 8 1_555 0.157 -0.237 0.068 0.230 -21.282 -6.253 9 B_C25:G8_A B 25 ? A 8 ? 19 1 1 B A 10 1_555 A U 7 1_555 0.050 -0.141 0.216 -4.870 -20.823 -8.913 10 B_A26:U7_A B 26 ? A 7 ? 20 1 1 B G 11 1_555 A C 6 1_555 -0.202 -0.262 0.110 -8.819 -25.902 -7.121 11 B_G27:C6_A B 27 ? A 6 ? 19 1 1 B A 12 1_555 B G 5 1_555 -0.115 1.425 -0.149 -30.374 -16.406 -25.917 12 B_A28:G21_B B 28 ? B 21 ? 8 ? 1 B C 13 1_555 B G 4 1_555 0.103 -0.461 -0.962 -2.696 -4.988 -2.332 13 B_C29:G20_B B 29 ? B 20 ? 19 1 1 B A 14 1_555 B U 3 1_555 0.112 -0.062 -0.159 11.236 -11.864 -5.020 14 B_A30:U19_B B 30 ? B 19 ? 20 1 1 B G 15 1_555 B C 2 1_555 -0.038 -0.314 0.798 3.499 1.838 -7.202 15 B_G31:C18_B B 31 ? B 18 ? 19 1 1 B C 16 1_555 B G 1 1_555 0.190 -0.199 0.194 -5.514 18.232 -4.922 16 B_C32:G17_B B 32 ? B 17 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 16 1_555 A A 2 1_555 A U 15 1_555 -2.863 -1.433 3.284 1.487 4.449 40.609 -2.524 4.258 3.015 6.384 -2.133 40.868 1 AA_G1A2:U15C16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A A 2 1_555 A U 15 1_555 A G 3 1_555 A C 14 1_555 0.861 -2.151 4.041 6.005 8.006 33.110 -5.089 -0.349 3.539 13.665 -10.249 34.549 2 AA_A2G3:C14U15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A G 3 1_555 A C 14 1_555 A C 4 1_555 A G 13 1_555 -1.174 -2.233 2.838 2.735 -2.100 33.310 -3.573 2.431 2.866 -3.651 -4.755 33.483 3 AA_G3C4:G13C14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A C 4 1_555 A G 13 1_555 A C 5 1_555 A G 12 1_555 0.742 -1.779 3.124 0.639 9.766 29.782 -4.908 -1.269 2.447 18.387 -1.204 31.315 4 AA_C4C5:G12G13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A C 5 1_555 A G 12 1_555 B U 6 1_555 A A 11 1_555 -1.357 -1.519 3.926 -8.191 -0.332 32.742 -2.551 0.671 4.150 -0.577 14.253 33.726 5 AB_C5U22:A11G12_AA A 5 ? A 12 ? B 22 ? A 11 ? 1 B U 6 1_555 A A 11 1_555 B C 7 1_555 A G 10 1_555 -0.765 -1.437 3.210 -0.398 10.025 32.867 -3.881 1.239 2.678 17.224 0.684 34.324 6 BB_U22C23:G10A11_AA B 22 ? A 11 ? B 23 ? A 10 ? 1 B C 7 1_555 A G 10 1_555 B C 8 1_555 A G 9 1_555 -0.298 -1.690 3.265 -1.785 18.266 28.794 -5.393 0.264 1.901 32.856 3.210 34.041 7 BB_C23C24:G9G10_AA B 23 ? A 10 ? B 24 ? A 9 ? 1 B C 8 1_555 A G 9 1_555 B C 9 1_555 A G 8 1_555 -0.334 -0.572 3.496 -0.443 17.295 36.106 -2.907 0.436 2.938 26.139 0.669 39.912 8 BB_C24C25:G8G9_AA B 24 ? A 9 ? B 25 ? A 8 ? 1 B C 9 1_555 A G 8 1_555 B A 10 1_555 A U 7 1_555 0.571 -0.592 3.322 -0.348 24.721 36.949 -3.041 -0.790 2.473 34.665 0.487 44.216 9 BB_C25A26:U7G8_AA B 25 ? A 8 ? B 26 ? A 7 ? 1 B A 10 1_555 A U 7 1_555 B G 11 1_555 A C 6 1_555 0.573 -1.614 3.411 2.553 7.789 32.209 -4.121 -0.578 2.986 13.763 -4.512 33.209 10 BB_A26G27:C6U7_AA B 26 ? A 7 ? B 27 ? A 6 ? 1 B G 11 1_555 A C 6 1_555 B A 12 1_555 B G 5 1_555 -0.921 -2.845 3.857 7.298 -12.118 27.860 -2.233 3.556 4.327 -23.358 -14.068 31.183 11 BB_G27A28:G21C6_BA B 27 ? A 6 ? B 28 ? B 21 ? 1 B A 12 1_555 B G 5 1_555 B C 13 1_555 B G 4 1_555 0.733 0.404 2.752 -0.297 4.386 30.276 0.028 -1.439 2.774 8.343 0.564 30.586 12 BB_A28C29:G20G21_BB B 28 ? B 21 ? B 29 ? B 20 ? 1 B C 13 1_555 B G 4 1_555 B A 14 1_555 B U 3 1_555 0.085 -1.006 2.929 -3.462 16.598 32.843 -3.456 -0.524 2.171 27.214 5.676 36.854 13 BB_C29A30:U19G20_BB B 29 ? B 20 ? B 30 ? B 19 ? 1 B A 14 1_555 B U 3 1_555 B G 15 1_555 B C 2 1_555 -0.424 -2.071 3.664 -5.624 9.929 29.258 -5.762 -0.309 2.857 18.780 10.638 31.359 14 BB_A30G31:C18U19_BB B 30 ? B 19 ? B 31 ? B 18 ? 1 B G 15 1_555 B C 2 1_555 B C 16 1_555 B G 1 1_555 0.383 -2.691 4.093 0.993 -2.768 29.656 -4.488 -0.477 4.331 -5.390 -1.935 29.798 15 BB_G31C32:G17C18_BB B 31 ? B 18 ? B 32 ? B 17 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Varian INOVA 1 'Varian INOVA' 600 Varian INOVA 2 'Varian INOVA' # _atom_sites.entry_id 2RN1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_