data_2RSN # _entry.id 2RSN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2RSN RCSB RCSB150235 BMRB 11496 WWPDB D_1000150235 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 11496 BMRB unspecified . 2RSO PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RSN _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-04-18 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shimojo, H.' 1 'Nishimura, Y.' 2 # _citation.id primary _citation.title 'Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing' _citation.journal_abbrev Mol.Cell _citation.journal_volume 47 _citation.page_first 228 _citation.page_last 241 _citation.year 2012 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22727667 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2012.05.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ishida, M.' 1 primary 'Shimojo, H.' 2 primary 'Hayashi, A.' 3 primary 'Kawaguchi, R.' 4 primary 'Ohtani, Y.' 5 primary 'Uegaki, K.' 6 primary 'Nishimura, Y.' 7 primary 'Nakayama, J.' 8 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chromo domain-containing protein 1' 8909.912 1 ? ? 'Chromo domain' ? 2 polymer syn 'peptide from Histone H3' 2025.360 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MVSVKPLPDIDSNEGETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRKK MVSVKPLPDIDSNEGETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRKK A ? 2 'polypeptide(L)' no yes 'ARTKQTAR(M3L)STGGKAPRY' ARTKQTARKSTGGKAPRY B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 SER n 1 4 VAL n 1 5 LYS n 1 6 PRO n 1 7 LEU n 1 8 PRO n 1 9 ASP n 1 10 ILE n 1 11 ASP n 1 12 SER n 1 13 ASN n 1 14 GLU n 1 15 GLY n 1 16 GLU n 1 17 THR n 1 18 ASP n 1 19 ALA n 1 20 ASP n 1 21 VAL n 1 22 TYR n 1 23 GLU n 1 24 VAL n 1 25 GLU n 1 26 ASP n 1 27 ILE n 1 28 LEU n 1 29 ALA n 1 30 ASP n 1 31 ARG n 1 32 VAL n 1 33 ASN n 1 34 LYS n 1 35 ASN n 1 36 GLY n 1 37 ILE n 1 38 ASN n 1 39 GLU n 1 40 TYR n 1 41 TYR n 1 42 ILE n 1 43 LYS n 1 44 TRP n 1 45 ALA n 1 46 GLY n 1 47 TYR n 1 48 ASP n 1 49 TRP n 1 50 TYR n 1 51 ASP n 1 52 ASN n 1 53 THR n 1 54 TRP n 1 55 GLU n 1 56 PRO n 1 57 GLU n 1 58 GLN n 1 59 ASN n 1 60 LEU n 1 61 PHE n 1 62 GLY n 1 63 ALA n 1 64 GLU n 1 65 LYS n 1 66 VAL n 1 67 LEU n 1 68 LYS n 1 69 LYS n 1 70 TRP n 1 71 LYS n 1 72 LYS n 1 73 ARG n 1 74 LYS n 1 75 LYS n 2 1 ALA n 2 2 ARG n 2 3 THR n 2 4 LYS n 2 5 GLN n 2 6 THR n 2 7 ALA n 2 8 ARG n 2 9 M3L n 2 10 SER n 2 11 THR n 2 12 GLY n 2 13 GLY n 2 14 LYS n 2 15 ALA n 2 16 PRO n 2 17 ARG n 2 18 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene chp1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 972 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284812 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pCOLD _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Schizosaccharomyces pombe' _pdbx_entity_src_syn.organism_common_name 'Fission yeast' _pdbx_entity_src_syn.ncbi_taxonomy_id 4896 _pdbx_entity_src_syn.details 'synthetic peptide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CHP1_SCHPO Q10103 1 MVSVKPLPDIDSNEGETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRKK 1 ? 2 PDB 2RSN 2RSN 2 ARTKQTARKSTGGKAPRY 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RSN A 1 ? 75 ? Q10103 1 ? 75 ? 1 75 2 2 2RSN B 1 ? 18 ? 2RSN 1 ? 18 ? 1 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC aliphatic' 1 3 1 '2D 1H-13C HSQC aromatic' 1 4 1 '3D HNCO' 1 5 1 '3D HNCA' 1 6 1 '3D HNCACB' 1 7 1 '3D HN(CO)CA' 1 8 1 '3D HN(CA)CO' 1 9 1 '3D CBCA(CO)NH' 1 10 1 '3D HBHA(CO)NH' 1 11 1 '3D HCCH-COSY' 1 12 1 '3D HCCH-TOCSY' 1 13 1 '3D 1H-15N NOESY' 1 14 1 '3D 1H-13C NOESY aliphatic' 1 15 1 '3D 1H-13C NOESY aromatic' 1 16 1 '3D 13C/15N filtered NOESY' 1 17 1 '2D 13C/15N fllterd NOESY' 1 18 1 '2D 13C/15N filterd TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;0.3-0.5mM [U-99% 13C; U-99% 15N] Chp1_chromodomain-1, 0.3-0.5mM Histone_H3K9me3-2, 20mM potassium phosphate-3, 10mM sodium chloride-4, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker Avance 1 'Bruker Avance' 800 Bruker Avance 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2RSN _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RSN _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RSN _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 1 ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 2 ? 'Yokochi, Sekiguchi and Inagaki' 'chemical shift assignment' Olivia 3 ? 'Yokochi, Sekiguchi and Inagaki' 'data analysis' Olivia 4 ? 'Yokochi, Sekiguchi and Inagaki' 'peak picking' Olivia 5 ? ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA 6 ? ;Linge, O'Donoghue and Nilges ; refinement ARIA 7 ? 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 8 ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 9 ? ? refinement CYANA 10 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RSN _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RSN _struct.title 'Solution structure of the chromodomain of Chp1 in complex with H3K9me3 peptide' _struct.pdbx_descriptor 'Chromo domain-containing protein 1, peptide from Histone H3' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RSN _struct_keywords.pdbx_keywords 'NUCLEAR PROTEIN' _struct_keywords.text 'chromodomain, protein-peptide complex, RNA-mediated gene silencing, Chromosomal protein, Methylation, NUCLEAR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 17 ? VAL A 21 ? THR A 17 VAL A 21 5 ? 5 HELX_P HELX_P2 2 ASP A 48 ? ASN A 52 ? ASP A 48 ASN A 52 5 ? 5 HELX_P HELX_P3 3 GLN A 58 ? PHE A 61 ? GLN A 58 PHE A 61 5 ? 4 HELX_P HELX_P4 4 ALA A 63 ? LYS A 74 ? ALA A 63 LYS A 74 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B ARG 8 C ? ? ? 1_555 B M3L 9 N ? ? B ARG 8 B M3L 9 1_555 ? ? ? ? ? ? ? 1.341 ? covale2 covale ? ? B M3L 9 C ? ? ? 1_555 B SER 10 N ? ? B M3L 9 B SER 10 1_555 ? ? ? ? ? ? ? 1.310 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 53 ? PRO A 56 ? THR A 53 PRO A 56 A 2 ASN A 38 ? ALA A 45 ? ASN A 38 ALA A 45 A 3 TYR A 22 ? VAL A 32 ? TYR A 22 VAL A 32 A 4 GLN B 5 ? ALA B 7 ? GLN B 5 ALA B 7 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 53 ? O THR A 53 N ILE A 42 ? N ILE A 42 A 2 3 O TYR A 41 ? O TYR A 41 N LEU A 28 ? N LEU A 28 A 3 4 N TYR A 22 ? N TYR A 22 O ALA B 7 ? O ALA B 7 # _atom_sites.entry_id 2RSN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 TRP 54 54 54 TRP TRP A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LYS 75 75 75 LYS LYS A . n B 2 1 ALA 1 1 1 ALA ALA B . n B 2 2 ARG 2 2 2 ARG ARG B . n B 2 3 THR 3 3 3 THR THR B . n B 2 4 LYS 4 4 4 LYS LYS B . n B 2 5 GLN 5 5 5 GLN GLN B . n B 2 6 THR 6 6 6 THR THR B . n B 2 7 ALA 7 7 7 ALA ALA B . n B 2 8 ARG 8 8 8 ARG ARG B . n B 2 9 M3L 9 9 9 M3L M3L B . n B 2 10 SER 10 10 10 SER SER B . n B 2 11 THR 11 11 11 THR THR B . n B 2 12 GLY 12 12 12 GLY GLY B . n B 2 13 GLY 13 13 13 GLY GLY B . n B 2 14 LYS 14 14 14 LYS LYS B . n B 2 15 ALA 15 15 15 ALA ALA B . n B 2 16 PRO 16 16 16 PRO PRO B . n B 2 17 ARG 17 17 17 ARG ARG B . n B 2 18 TYR 18 18 18 TYR TYR B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id M3L _pdbx_struct_mod_residue.label_seq_id 9 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id M3L _pdbx_struct_mod_residue.auth_seq_id 9 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-TRIMETHYLLYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-08-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id Chp1_chromodomain-1 ? 0.3-0.5 mM '[U-99% 13C; U-99% 15N]' 1 Histone_H3K9me3-2 ? 0.3-0.5 mM ? 1 'potassium phosphate-3' 20 ? mM ? 1 'sodium chloride-4' 10 ? mM ? 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 20 ? ? HH21 B ARG 8 ? ? 1.57 2 1 HZ1 A LYS 71 ? ? OXT A LYS 75 ? ? 1.58 3 2 HH21 A ARG 31 ? ? OE2 A GLU 39 ? ? 1.58 4 2 OD2 A ASP 9 ? ? HH12 B ARG 8 ? ? 1.59 5 3 HZ2 A LYS 43 ? ? OD1 A ASP 51 ? ? 1.55 6 3 OE1 A GLU 64 ? ? HZ2 A LYS 65 ? ? 1.55 7 3 HZ1 A LYS 74 ? ? OXT A LYS 75 ? ? 1.59 8 4 OE2 A GLU 55 ? ? HZ3 B LYS 14 ? ? 1.57 9 4 OE1 A GLU 25 ? ? HZ3 A LYS 43 ? ? 1.57 10 5 OD1 A ASP 26 ? ? HZ2 A LYS 69 ? ? 1.58 11 6 OE2 A GLU 23 ? ? HZ1 B LYS 4 ? ? 1.56 12 6 OD1 A ASP 20 ? ? HZ1 B LYS 14 ? ? 1.56 13 6 OD2 A ASP 30 ? ? HZ1 A LYS 74 ? ? 1.60 14 7 OD2 A ASP 20 ? ? HH22 B ARG 8 ? ? 1.55 15 7 OE1 A GLU 64 ? ? HZ2 A LYS 68 ? ? 1.55 16 7 OE2 A GLU 39 ? ? HZ2 B LYS 14 ? ? 1.59 17 8 OE2 A GLU 57 ? ? HZ2 A LYS 71 ? ? 1.55 18 8 OE1 A GLU 23 ? ? HZ3 B LYS 4 ? ? 1.58 19 8 OE2 A GLU 64 ? ? HZ2 A LYS 68 ? ? 1.58 20 9 HH A TYR 40 ? ? OE1 A GLU 57 ? ? 1.58 21 9 OE1 A GLU 23 ? ? HZ1 B LYS 4 ? ? 1.59 22 10 OE1 A GLU 64 ? ? HZ2 A LYS 68 ? ? 1.57 23 10 OD2 A ASP 26 ? ? HZ1 A LYS 69 ? ? 1.58 24 10 HZ3 A LYS 74 ? ? O A LYS 75 ? ? 1.58 25 11 OE1 A GLU 64 ? ? HZ2 A LYS 65 ? ? 1.52 26 11 OE2 A GLU 64 ? ? HZ2 A LYS 68 ? ? 1.56 27 12 OD1 A ASP 20 ? ? HH21 B ARG 8 ? ? 1.59 28 12 OE1 A GLU 64 ? ? HZ3 A LYS 65 ? ? 1.60 29 13 OE2 A GLU 64 ? ? HZ1 A LYS 68 ? ? 1.56 30 13 HH11 A ARG 31 ? ? OE1 A GLU 39 ? ? 1.57 31 14 OD2 A ASP 20 ? ? HH21 B ARG 8 ? ? 1.56 32 15 OE1 A GLU 64 ? ? HZ1 A LYS 65 ? ? 1.55 33 15 OE2 A GLU 64 ? ? HZ1 A LYS 68 ? ? 1.56 34 16 OE1 A GLU 64 ? ? HZ2 A LYS 68 ? ? 1.58 35 17 OD2 A ASP 20 ? ? HH21 B ARG 8 ? ? 1.57 36 17 OE1 A GLU 23 ? ? HH22 B ARG 2 ? ? 1.58 37 18 OE2 A GLU 64 ? ? HZ1 A LYS 68 ? ? 1.55 38 18 OD1 A ASP 20 ? ? HH21 B ARG 8 ? ? 1.59 39 19 OD2 A ASP 26 ? ? HZ2 A LYS 69 ? ? 1.55 40 19 OD2 A ASP 20 ? ? HH22 B ARG 8 ? ? 1.56 41 20 HZ3 A LYS 71 ? ? O A LYS 75 ? ? 1.56 42 20 OE1 A GLU 64 ? ? HZ3 A LYS 68 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 M3L B 9 ? ? 78.48 107.92 2 2 ASP A 26 ? ? 179.70 178.84 3 2 ALA A 63 ? ? -91.17 31.79 4 2 M3L B 9 ? ? 86.95 6.50 5 3 M3L B 9 ? ? 84.96 101.01 6 3 SER B 10 ? ? -66.71 89.54 7 4 ALA A 63 ? ? -92.10 31.57 8 4 M3L B 9 ? ? 69.49 110.65 9 5 PRO A 8 ? ? -67.81 87.41 10 5 M3L B 9 ? ? 73.44 92.25 11 5 SER B 10 ? ? -64.10 96.53 12 6 PRO A 6 ? ? -56.20 175.23 13 6 PRO A 8 ? ? -9.35 109.74 14 6 M3L B 9 ? ? 89.06 91.37 15 7 M3L B 9 ? ? 91.41 78.02 16 8 ALA A 63 ? ? -92.12 32.57 17 8 M3L B 9 ? ? 85.37 74.94 18 8 SER B 10 ? ? -62.25 99.21 19 9 M3L B 9 ? ? 79.18 86.04 20 10 ALA A 63 ? ? -93.36 30.50 21 10 M3L B 9 ? ? 81.38 105.93 22 11 ALA A 63 ? ? -92.60 30.41 23 11 M3L B 9 ? ? 82.92 93.96 24 11 SER B 10 ? ? -63.38 90.32 25 12 ALA A 63 ? ? -90.78 30.85 26 12 M3L B 9 ? ? 72.32 94.07 27 13 ASP A 26 ? ? 179.99 178.70 28 13 M3L B 9 ? ? 87.52 76.93 29 13 SER B 10 ? ? -67.51 90.33 30 14 PRO A 8 ? ? -61.74 99.39 31 14 M3L B 9 ? ? 91.13 99.35 32 15 ALA A 63 ? ? -94.01 31.25 33 15 M3L B 9 ? ? 94.79 97.04 34 15 SER B 10 ? ? -64.18 -97.19 35 16 ALA A 63 ? ? -97.26 30.83 36 16 ARG B 8 ? ? -61.30 -70.68 37 16 M3L B 9 ? ? 83.13 96.90 38 17 ALA A 63 ? ? -98.90 30.68 39 17 M3L B 9 ? ? 88.30 86.61 40 17 SER B 10 ? ? -61.98 90.90 41 18 THR A 17 ? ? -79.45 23.78 42 18 ALA A 63 ? ? -94.81 32.85 43 18 M3L B 9 ? ? 75.67 108.63 44 19 ALA A 63 ? ? -92.56 31.24 45 19 M3L B 9 ? ? 88.05 93.99 46 20 PRO A 8 ? ? -68.18 99.74 47 20 M3L B 9 ? ? 90.08 90.85 #