data_2SIV # _entry.id 2SIV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2SIV pdb_00002siv 10.2210/pdb2siv/pdb WWPDB D_1000178631 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2SIV _pdbx_database_status.recvd_initial_deposition_date 1998-06-17 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malashkevich, V.N.' 1 'Chan, D.C.' 2 'Chutkowski, C.T.' 3 'Kim, P.S.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structure of the simian immunodeficiency virus (SIV) gp41 core: conserved helical interactions underlie the broad inhibitory activity of gp41 peptides. ; Proc.Natl.Acad.Sci.USA 95 9134 9139 1998 PNASA6 US 0027-8424 0040 ? 9689046 10.1073/pnas.95.16.9134 1 'Core Structure of Gp41 from the HIV Envelope Glycoprotein' 'Cell(Cambridge,Mass.)' 89 263 ? 1997 CELLB5 US 0092-8674 0998 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Malashkevich, V.N.' 1 ? primary 'Chan, D.C.' 2 ? primary 'Chutkowski, C.T.' 3 ? primary 'Kim, P.S.' 4 ? 1 'Chan, D.C.' 5 ? 1 'Fass, D.' 6 ? 1 'Berger, J.M.' 7 ? 1 'Kim, P.S.' 8 ? # _cell.entry_id 2SIV _cell.length_a 55.722 _cell.length_b 57.713 _cell.length_c 66.513 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2SIV _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SIV GP41 GLYCOPROTEIN' 4218.902 3 ? ? 'PROTEASE-RESISTANT CORE' 'N36 AND C34 ARE SYNTHETIC PEPTIDES' 2 polymer man 'SIV GP41 GLYCOPROTEIN' 4309.762 3 ? ? 'PROTEASE-RESISTANT CORE' 'N36 AND C34 ARE SYNTHETIC PEPTIDES' 3 water nat water 18.015 184 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'N36/C34 CORE' 2 'N36/C34 CORE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(ACE)AGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVT(NH2)' XAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTX A,C,E ? 2 'polypeptide(L)' no yes '(ACE)WQEWERKVDFLEENITALLEEAQIQQEKNMYELQ(NH2)' XWQEWERKVDFLEENITALLEEAQIQQEKNMYELQX B,D,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 ALA n 1 3 GLY n 1 4 ILE n 1 5 VAL n 1 6 GLN n 1 7 GLN n 1 8 GLN n 1 9 GLN n 1 10 GLN n 1 11 LEU n 1 12 LEU n 1 13 ASP n 1 14 VAL n 1 15 VAL n 1 16 LYS n 1 17 ARG n 1 18 GLN n 1 19 GLN n 1 20 GLU n 1 21 LEU n 1 22 LEU n 1 23 ARG n 1 24 LEU n 1 25 THR n 1 26 VAL n 1 27 TRP n 1 28 GLY n 1 29 THR n 1 30 LYS n 1 31 ASN n 1 32 LEU n 1 33 GLN n 1 34 THR n 1 35 ARG n 1 36 VAL n 1 37 THR n 1 38 NH2 n 2 1 ACE n 2 2 TRP n 2 3 GLN n 2 4 GLU n 2 5 TRP n 2 6 GLU n 2 7 ARG n 2 8 LYS n 2 9 VAL n 2 10 ASP n 2 11 PHE n 2 12 LEU n 2 13 GLU n 2 14 GLU n 2 15 ASN n 2 16 ILE n 2 17 THR n 2 18 ALA n 2 19 LEU n 2 20 LEU n 2 21 GLU n 2 22 GLU n 2 23 ALA n 2 24 GLN n 2 25 ILE n 2 26 GLN n 2 27 GLN n 2 28 GLU n 2 29 LYS n 2 30 ASN n 2 31 MET n 2 32 TYR n 2 33 GLU n 2 34 LEU n 2 35 GLN n 2 36 NH2 n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Lentivirus GP41 ? ? ? ? ? ? 'Simian immunodeficiency virus' 11723 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? Lentivirus GP41 ? MAC239 ? ? ? ? 'Simian immunodeficiency virus' 11723 ? ? ? ? ? ? 'VIRAL MEMBRANE' ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP Q87973_SIVCZ Q87973 1 46 ? ? 2 UNP Q87973_SIVCZ Q87973 2 124 ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2SIV A 2 ? 37 ? Q87973 46 ? 81 ? 546 581 2 2 2SIV B 2 ? 35 ? Q87973 124 ? 157 ? 628 661 3 1 2SIV C 2 ? 37 ? Q87973 46 ? 81 ? 546 581 4 2 2SIV D 2 ? 35 ? Q87973 124 ? 157 ? 628 661 5 1 2SIV E 2 ? 37 ? Q87973 46 ? 81 ? 546 581 6 2 2SIV F 2 ? 35 ? Q87973 124 ? 157 ? 628 661 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 2SIV LYS B 8 ? UNP Q87973 GLN 649 conflict 634 1 2 2SIV GLU B 14 ? UNP Q87973 ALA 655 conflict 640 2 2 2SIV ALA B 18 ? UNP Q87973 GLN 659 conflict 644 3 4 2SIV LYS D 8 ? UNP Q87973 GLN 649 conflict 634 4 4 2SIV GLU D 14 ? UNP Q87973 ALA 655 conflict 640 5 4 2SIV ALA D 18 ? UNP Q87973 GLN 659 conflict 644 6 6 2SIV LYS F 8 ? UNP Q87973 GLN 649 conflict 634 7 6 2SIV GLU F 14 ? UNP Q87973 ALA 655 conflict 640 8 6 2SIV ALA F 18 ? UNP Q87973 GLN 659 conflict 644 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2SIV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 44 _exptl_crystal.description 'CRYSTAL DEMONSTRATED HIGH MOSAICITY (1.2 DEGREES) AND ANISOTROPIC DIFFRACTION' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 18-19% PEG8000, 0.1 M SODIUM CACODILATE PH 6.5, 0.2 M MG-ACETATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 1998-05 _diffrn_detector.details 'YALE MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NICKEL FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2SIV _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 11157 _reflns.number_all ? _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.0580000 _reflns.pdbx_Rsym_value 0.0580000 _reflns.pdbx_netI_over_sigmaI 23.3 _reflns.B_iso_Wilson_estimate 26.1 _reflns.pdbx_redundancy 4.9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 88.3 _reflns_shell.Rmerge_I_obs 0.2440000 _reflns_shell.pdbx_Rsym_value 0.2440000 _reflns_shell.meanI_over_sigI_obs 5.5 _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2SIV _refine.ls_number_reflns_obs 10857 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.00100 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 95.7 _refine.ls_R_factor_obs 0.2110000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2110000 _refine.ls_R_factor_R_free 0.2880000 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1068 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 35.4 _refine.aniso_B[1][1] -9.45 _refine.aniso_B[2][2] -3.42 _refine.aniso_B[3][3] 12.87 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB ENTRY 1AIK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2SIV _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.37 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.39 _refine_analyze.Luzzati_sigma_a_free 0.39 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1809 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 184 _refine_hist.number_atoms_total 1993 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 20.8 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.65 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.5 3.3 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.0 4.2 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.0 4.7 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 2.5 6.2 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 1519 _refine_ls_shell.R_factor_R_work 0.3300000 _refine_ls_shell.percent_reflns_obs 89.8 _refine_ls_shell.R_factor_R_free 0.3990000 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 8.7 _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 ? TOPH19.SOL 'X-RAY DIFFRACTION' # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.997495 0.030635 0.063762 0.068623 -0.637871 -0.767080 0.017172 0.769534 -0.638375 -0.61806 4.72568 9.06871 2 given ? 0.997852 0.065160 -0.006749 0.034627 -0.437199 0.898698 0.055608 -0.897001 -0.438516 0.37640 -4.14261 8.52557 3 given ? 0.993118 -0.059416 0.100926 0.031675 -0.693376 -0.719880 0.112752 0.718122 -0.686722 -1.35870 4.19844 5.67586 4 given ? 0.984594 -0.138165 0.107169 -0.100742 0.052722 0.993515 -0.142919 -0.989005 0.037990 -2.10360 3.73381 8.69652 # _struct.entry_id 2SIV _struct.title 'SIV GP41 CORE STRUCTURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2SIV _struct_keywords.pdbx_keywords 'ENVELOPE GLYCOPROTEIN' _struct_keywords.text 'ENVELOPE GLYCOPROTEIN, RETROVIRUS, HIV, SIV, GP41, COAT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 3 ? ARG A 35 ? GLY A 547 ARG A 579 1 ? 33 HELX_P HELX_P2 2 GLN B 3 ? GLU B 33 ? GLN B 629 GLU B 659 1 ? 31 HELX_P HELX_P3 3 GLY C 3 ? ARG C 35 ? GLY C 547 ARG C 579 1 ? 33 HELX_P HELX_P4 4 GLN D 3 ? GLU D 33 ? GLN D 629 GLU D 659 1 ? 31 HELX_P HELX_P5 5 ILE E 4 ? ARG E 35 ? ILE E 548 ARG E 579 1 ? 32 HELX_P HELX_P6 6 GLN F 3 ? GLU F 33 ? GLN F 629 GLU F 659 1 ? 31 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A ALA 2 N ? ? A ACE 545 A ALA 546 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A THR 37 C ? ? ? 1_555 A NH2 38 N ? ? A THR 581 A NH2 582 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B TRP 2 N ? ? B ACE 627 B TRP 628 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? B GLN 35 C ? ? ? 1_555 B NH2 36 N ? ? B GLN 661 B NH2 662 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale5 covale both ? C ACE 1 C ? ? ? 1_555 C ALA 2 N ? ? C ACE 545 C ALA 546 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? C THR 37 C ? ? ? 1_555 C NH2 38 N ? ? C THR 581 C NH2 582 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale7 covale both ? D ACE 1 C ? ? ? 1_555 D TRP 2 N ? ? D ACE 627 D TRP 628 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? D GLN 35 C ? ? ? 1_555 D NH2 36 N ? ? D GLN 661 D NH2 662 1_555 ? ? ? ? ? ? ? 1.246 ? ? covale9 covale both ? E ACE 1 C ? ? ? 1_555 E ALA 2 N ? ? E ACE 545 E ALA 546 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale10 covale both ? E THR 37 C ? ? ? 1_555 E NH2 38 N ? ? E THR 581 E NH2 582 1_555 ? ? ? ? ? ? ? 1.302 ? ? covale11 covale both ? F ACE 1 C ? ? ? 1_555 F TRP 2 N ? ? F ACE 627 F TRP 628 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale both ? F GLN 35 C ? ? ? 1_555 F NH2 36 N ? ? F GLN 661 F NH2 662 1_555 ? ? ? ? ? ? ? 1.252 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACE 545 ? 3 'BINDING SITE FOR RESIDUE ACE A 545' AC2 Software B ACE 627 ? 3 'BINDING SITE FOR RESIDUE ACE B 627' AC3 Software D ACE 627 ? 3 'BINDING SITE FOR RESIDUE ACE D 627' AC4 Software F ACE 627 ? 2 'BINDING SITE FOR RESIDUE ACE F 627' AC5 Software E ACE 545 ? 2 'BINDING SITE FOR RESIDUE ACE E 545' AC6 Software C ACE 545 ? 3 'BINDING SITE FOR RESIDUE ACE C 545' AC7 Software A NH2 582 ? 3 'BINDING SITE FOR RESIDUE NH2 A 582' AC8 Software B NH2 662 ? 3 'BINDING SITE FOR RESIDUE NH2 B 662' AC9 Software D NH2 662 ? 1 'BINDING SITE FOR RESIDUE NH2 D 662' AD1 Software F NH2 662 ? 2 'BINDING SITE FOR RESIDUE NH2 F 662' AD2 Software E NH2 582 ? 2 'BINDING SITE FOR RESIDUE NH2 E 582' AD3 Software C NH2 582 ? 3 'BINDING SITE FOR RESIDUE NH2 C 582' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLY A 3 ? GLY A 547 . ? 1_555 ? 2 AC1 3 ILE A 4 ? ILE A 548 . ? 1_555 ? 3 AC1 3 HOH G . ? HOH A 149 . ? 1_555 ? 4 AC2 3 GLN B 3 ? GLN B 629 . ? 1_555 ? 5 AC2 3 TRP B 5 ? TRP B 631 . ? 1_555 ? 6 AC2 3 HOH H . ? HOH B 54 . ? 1_555 ? 7 AC3 3 GLN D 3 ? GLN D 629 . ? 1_555 ? 8 AC3 3 GLU D 4 ? GLU D 630 . ? 1_555 ? 9 AC3 3 TRP D 5 ? TRP D 631 . ? 1_555 ? 10 AC4 2 GLN F 3 ? GLN F 629 . ? 1_555 ? 11 AC4 2 TRP F 5 ? TRP F 631 . ? 1_555 ? 12 AC5 2 LEU D 34 ? LEU D 660 . ? 1_555 ? 13 AC5 2 GLY E 3 ? GLY E 547 . ? 1_555 ? 14 AC6 3 GLY C 3 ? GLY C 547 . ? 1_555 ? 15 AC6 3 ILE C 4 ? ILE C 548 . ? 1_555 ? 16 AC6 3 VAL C 5 ? VAL C 549 . ? 1_555 ? 17 AC7 3 THR A 34 ? THR A 578 . ? 1_555 ? 18 AC7 3 ARG A 35 ? ARG A 579 . ? 1_555 ? 19 AC7 3 THR A 37 ? THR A 581 . ? 1_555 ? 20 AC8 3 TYR B 32 ? TYR B 658 . ? 1_555 ? 21 AC8 3 GLU B 33 ? GLU B 659 . ? 1_555 ? 22 AC8 3 GLN B 35 ? GLN B 661 . ? 1_555 ? 23 AC9 1 GLN D 35 ? GLN D 661 . ? 1_555 ? 24 AD1 2 GLN F 35 ? GLN F 661 . ? 1_555 ? 25 AD1 2 HOH G . ? HOH A 105 . ? 1_555 ? 26 AD2 2 THR E 34 ? THR E 578 . ? 1_555 ? 27 AD2 2 THR E 37 ? THR E 581 . ? 1_555 ? 28 AD3 3 ARG C 35 ? ARG C 579 . ? 1_555 ? 29 AD3 3 VAL C 36 ? VAL C 580 . ? 1_555 ? 30 AD3 3 THR C 37 ? THR C 581 . ? 1_555 ? # _database_PDB_matrix.entry_id 2SIV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2SIV _atom_sites.fract_transf_matrix[1][1] 0.017946 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017327 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015035 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 545 545 ACE ACE A . n A 1 2 ALA 2 546 546 ALA ALA A . n A 1 3 GLY 3 547 547 GLY GLY A . n A 1 4 ILE 4 548 548 ILE ILE A . n A 1 5 VAL 5 549 549 VAL VAL A . n A 1 6 GLN 6 550 550 GLN GLN A . n A 1 7 GLN 7 551 551 GLN GLN A . n A 1 8 GLN 8 552 552 GLN GLN A . n A 1 9 GLN 9 553 553 GLN GLN A . n A 1 10 GLN 10 554 554 GLN GLN A . n A 1 11 LEU 11 555 555 LEU LEU A . n A 1 12 LEU 12 556 556 LEU LEU A . n A 1 13 ASP 13 557 557 ASP ASP A . n A 1 14 VAL 14 558 558 VAL VAL A . n A 1 15 VAL 15 559 559 VAL VAL A . n A 1 16 LYS 16 560 560 LYS LYS A . n A 1 17 ARG 17 561 561 ARG ARG A . n A 1 18 GLN 18 562 562 GLN GLN A . n A 1 19 GLN 19 563 563 GLN GLN A . n A 1 20 GLU 20 564 564 GLU GLU A . n A 1 21 LEU 21 565 565 LEU LEU A . n A 1 22 LEU 22 566 566 LEU LEU A . n A 1 23 ARG 23 567 567 ARG ARG A . n A 1 24 LEU 24 568 568 LEU LEU A . n A 1 25 THR 25 569 569 THR THR A . n A 1 26 VAL 26 570 570 VAL VAL A . n A 1 27 TRP 27 571 571 TRP TRP A . n A 1 28 GLY 28 572 572 GLY GLY A . n A 1 29 THR 29 573 573 THR THR A . n A 1 30 LYS 30 574 574 LYS LYS A . n A 1 31 ASN 31 575 575 ASN ASN A . n A 1 32 LEU 32 576 576 LEU LEU A . n A 1 33 GLN 33 577 577 GLN GLN A . n A 1 34 THR 34 578 578 THR THR A . n A 1 35 ARG 35 579 579 ARG ARG A . n A 1 36 VAL 36 580 580 VAL VAL A . n A 1 37 THR 37 581 581 THR THR A . n A 1 38 NH2 38 582 582 NH2 NH2 A . n B 2 1 ACE 1 627 627 ACE ACE B . n B 2 2 TRP 2 628 628 TRP TRP B . n B 2 3 GLN 3 629 629 GLN GLN B . n B 2 4 GLU 4 630 630 GLU GLU B . n B 2 5 TRP 5 631 631 TRP TRP B . n B 2 6 GLU 6 632 632 GLU GLU B . n B 2 7 ARG 7 633 633 ARG ARG B . n B 2 8 LYS 8 634 634 LYS LYS B . n B 2 9 VAL 9 635 635 VAL VAL B . n B 2 10 ASP 10 636 636 ASP ASP B . n B 2 11 PHE 11 637 637 PHE PHE B . n B 2 12 LEU 12 638 638 LEU LEU B . n B 2 13 GLU 13 639 639 GLU GLU B . n B 2 14 GLU 14 640 640 GLU GLU B . n B 2 15 ASN 15 641 641 ASN ASN B . n B 2 16 ILE 16 642 642 ILE ILE B . n B 2 17 THR 17 643 643 THR THR B . n B 2 18 ALA 18 644 644 ALA ALA B . n B 2 19 LEU 19 645 645 LEU LEU B . n B 2 20 LEU 20 646 646 LEU LEU B . n B 2 21 GLU 21 647 647 GLU GLU B . n B 2 22 GLU 22 648 648 GLU GLU B . n B 2 23 ALA 23 649 649 ALA ALA B . n B 2 24 GLN 24 650 650 GLN GLN B . n B 2 25 ILE 25 651 651 ILE ILE B . n B 2 26 GLN 26 652 652 GLN GLN B . n B 2 27 GLN 27 653 653 GLN GLN B . n B 2 28 GLU 28 654 654 GLU GLU B . n B 2 29 LYS 29 655 655 LYS LYS B . n B 2 30 ASN 30 656 656 ASN ASN B . n B 2 31 MET 31 657 657 MET MET B . n B 2 32 TYR 32 658 658 TYR TYR B . n B 2 33 GLU 33 659 659 GLU GLU B . n B 2 34 LEU 34 660 660 LEU LEU B . n B 2 35 GLN 35 661 661 GLN GLN B . n B 2 36 NH2 36 662 662 NH2 NH2 B . n C 1 1 ACE 1 545 545 ACE ACE C . n C 1 2 ALA 2 546 546 ALA ALA C . n C 1 3 GLY 3 547 547 GLY GLY C . n C 1 4 ILE 4 548 548 ILE ILE C . n C 1 5 VAL 5 549 549 VAL VAL C . n C 1 6 GLN 6 550 550 GLN GLN C . n C 1 7 GLN 7 551 551 GLN GLN C . n C 1 8 GLN 8 552 552 GLN GLN C . n C 1 9 GLN 9 553 553 GLN GLN C . n C 1 10 GLN 10 554 554 GLN GLN C . n C 1 11 LEU 11 555 555 LEU LEU C . n C 1 12 LEU 12 556 556 LEU LEU C . n C 1 13 ASP 13 557 557 ASP ASP C . n C 1 14 VAL 14 558 558 VAL VAL C . n C 1 15 VAL 15 559 559 VAL VAL C . n C 1 16 LYS 16 560 560 LYS LYS C . n C 1 17 ARG 17 561 561 ARG ARG C . n C 1 18 GLN 18 562 562 GLN GLN C . n C 1 19 GLN 19 563 563 GLN GLN C . n C 1 20 GLU 20 564 564 GLU GLU C . n C 1 21 LEU 21 565 565 LEU LEU C . n C 1 22 LEU 22 566 566 LEU LEU C . n C 1 23 ARG 23 567 567 ARG ARG C . n C 1 24 LEU 24 568 568 LEU LEU C . n C 1 25 THR 25 569 569 THR THR C . n C 1 26 VAL 26 570 570 VAL VAL C . n C 1 27 TRP 27 571 571 TRP TRP C . n C 1 28 GLY 28 572 572 GLY GLY C . n C 1 29 THR 29 573 573 THR THR C . n C 1 30 LYS 30 574 574 LYS LYS C . n C 1 31 ASN 31 575 575 ASN ASN C . n C 1 32 LEU 32 576 576 LEU LEU C . n C 1 33 GLN 33 577 577 GLN GLN C . n C 1 34 THR 34 578 578 THR THR C . n C 1 35 ARG 35 579 579 ARG ARG C . n C 1 36 VAL 36 580 580 VAL VAL C . n C 1 37 THR 37 581 581 THR THR C . n C 1 38 NH2 38 582 582 NH2 NH2 C . n D 2 1 ACE 1 627 627 ACE ACE D . n D 2 2 TRP 2 628 628 TRP TRP D . n D 2 3 GLN 3 629 629 GLN GLN D . n D 2 4 GLU 4 630 630 GLU GLU D . n D 2 5 TRP 5 631 631 TRP TRP D . n D 2 6 GLU 6 632 632 GLU GLU D . n D 2 7 ARG 7 633 633 ARG ARG D . n D 2 8 LYS 8 634 634 LYS LYS D . n D 2 9 VAL 9 635 635 VAL VAL D . n D 2 10 ASP 10 636 636 ASP ASP D . n D 2 11 PHE 11 637 637 PHE PHE D . n D 2 12 LEU 12 638 638 LEU LEU D . n D 2 13 GLU 13 639 639 GLU GLU D . n D 2 14 GLU 14 640 640 GLU GLU D . n D 2 15 ASN 15 641 641 ASN ASN D . n D 2 16 ILE 16 642 642 ILE ILE D . n D 2 17 THR 17 643 643 THR THR D . n D 2 18 ALA 18 644 644 ALA ALA D . n D 2 19 LEU 19 645 645 LEU LEU D . n D 2 20 LEU 20 646 646 LEU LEU D . n D 2 21 GLU 21 647 647 GLU GLU D . n D 2 22 GLU 22 648 648 GLU GLU D . n D 2 23 ALA 23 649 649 ALA ALA D . n D 2 24 GLN 24 650 650 GLN GLN D . n D 2 25 ILE 25 651 651 ILE ILE D . n D 2 26 GLN 26 652 652 GLN GLN D . n D 2 27 GLN 27 653 653 GLN GLN D . n D 2 28 GLU 28 654 654 GLU GLU D . n D 2 29 LYS 29 655 655 LYS LYS D . n D 2 30 ASN 30 656 656 ASN ASN D . n D 2 31 MET 31 657 657 MET MET D . n D 2 32 TYR 32 658 658 TYR TYR D . n D 2 33 GLU 33 659 659 GLU GLU D . n D 2 34 LEU 34 660 660 LEU LEU D . n D 2 35 GLN 35 661 661 GLN GLN D . n D 2 36 NH2 36 662 662 NH2 NH2 D . n E 1 1 ACE 1 545 545 ACE ACE E . n E 1 2 ALA 2 546 546 ALA ALA E . n E 1 3 GLY 3 547 547 GLY GLY E . n E 1 4 ILE 4 548 548 ILE ILE E . n E 1 5 VAL 5 549 549 VAL VAL E . n E 1 6 GLN 6 550 550 GLN GLN E . n E 1 7 GLN 7 551 551 GLN GLN E . n E 1 8 GLN 8 552 552 GLN GLN E . n E 1 9 GLN 9 553 553 GLN GLN E . n E 1 10 GLN 10 554 554 GLN GLN E . n E 1 11 LEU 11 555 555 LEU LEU E . n E 1 12 LEU 12 556 556 LEU LEU E . n E 1 13 ASP 13 557 557 ASP ASP E . n E 1 14 VAL 14 558 558 VAL VAL E . n E 1 15 VAL 15 559 559 VAL VAL E . n E 1 16 LYS 16 560 560 LYS LYS E . n E 1 17 ARG 17 561 561 ARG ARG E . n E 1 18 GLN 18 562 562 GLN GLN E . n E 1 19 GLN 19 563 563 GLN GLN E . n E 1 20 GLU 20 564 564 GLU GLU E . n E 1 21 LEU 21 565 565 LEU LEU E . n E 1 22 LEU 22 566 566 LEU LEU E . n E 1 23 ARG 23 567 567 ARG ARG E . n E 1 24 LEU 24 568 568 LEU LEU E . n E 1 25 THR 25 569 569 THR THR E . n E 1 26 VAL 26 570 570 VAL VAL E . n E 1 27 TRP 27 571 571 TRP TRP E . n E 1 28 GLY 28 572 572 GLY GLY E . n E 1 29 THR 29 573 573 THR THR E . n E 1 30 LYS 30 574 574 LYS LYS E . n E 1 31 ASN 31 575 575 ASN ASN E . n E 1 32 LEU 32 576 576 LEU LEU E . n E 1 33 GLN 33 577 577 GLN GLN E . n E 1 34 THR 34 578 578 THR THR E . n E 1 35 ARG 35 579 579 ARG ARG E . n E 1 36 VAL 36 580 580 VAL VAL E . n E 1 37 THR 37 581 581 THR THR E . n E 1 38 NH2 38 582 582 NH2 NH2 E . n F 2 1 ACE 1 627 627 ACE ACE F . n F 2 2 TRP 2 628 628 TRP TRP F . n F 2 3 GLN 3 629 629 GLN GLN F . n F 2 4 GLU 4 630 630 GLU GLU F . n F 2 5 TRP 5 631 631 TRP TRP F . n F 2 6 GLU 6 632 632 GLU GLU F . n F 2 7 ARG 7 633 633 ARG ARG F . n F 2 8 LYS 8 634 634 LYS LYS F . n F 2 9 VAL 9 635 635 VAL VAL F . n F 2 10 ASP 10 636 636 ASP ASP F . n F 2 11 PHE 11 637 637 PHE PHE F . n F 2 12 LEU 12 638 638 LEU LEU F . n F 2 13 GLU 13 639 639 GLU GLU F . n F 2 14 GLU 14 640 640 GLU GLU F . n F 2 15 ASN 15 641 641 ASN ASN F . n F 2 16 ILE 16 642 642 ILE ILE F . n F 2 17 THR 17 643 643 THR THR F . n F 2 18 ALA 18 644 644 ALA ALA F . n F 2 19 LEU 19 645 645 LEU LEU F . n F 2 20 LEU 20 646 646 LEU LEU F . n F 2 21 GLU 21 647 647 GLU GLU F . n F 2 22 GLU 22 648 648 GLU GLU F . n F 2 23 ALA 23 649 649 ALA ALA F . n F 2 24 GLN 24 650 650 GLN GLN F . n F 2 25 ILE 25 651 651 ILE ILE F . n F 2 26 GLN 26 652 652 GLN GLN F . n F 2 27 GLN 27 653 653 GLN GLN F . n F 2 28 GLU 28 654 654 GLU GLU F . n F 2 29 LYS 29 655 655 LYS LYS F . n F 2 30 ASN 30 656 656 ASN ASN F . n F 2 31 MET 31 657 657 MET MET F . n F 2 32 TYR 32 658 658 TYR TYR F . n F 2 33 GLU 33 659 659 GLU GLU F . n F 2 34 LEU 34 660 660 LEU LEU F . n F 2 35 GLN 35 661 661 GLN GLN F . n F 2 36 NH2 36 662 662 NH2 NH2 F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 HOH 1 1 1 HOH HOH A . G 3 HOH 2 6 6 HOH HOH A . G 3 HOH 3 11 11 HOH HOH A . G 3 HOH 4 43 43 HOH HOH A . G 3 HOH 5 49 49 HOH HOH A . G 3 HOH 6 56 56 HOH HOH A . G 3 HOH 7 68 68 HOH HOH A . G 3 HOH 8 72 72 HOH HOH A . G 3 HOH 9 84 84 HOH HOH A . G 3 HOH 10 105 105 HOH HOH A . G 3 HOH 11 109 109 HOH HOH A . G 3 HOH 12 110 110 HOH HOH A . G 3 HOH 13 111 111 HOH HOH A . G 3 HOH 14 112 112 HOH HOH A . G 3 HOH 15 113 113 HOH HOH A . G 3 HOH 16 115 115 HOH HOH A . G 3 HOH 17 119 119 HOH HOH A . G 3 HOH 18 149 149 HOH HOH A . G 3 HOH 19 151 151 HOH HOH A . G 3 HOH 20 153 153 HOH HOH A . G 3 HOH 21 154 154 HOH HOH A . G 3 HOH 22 155 155 HOH HOH A . G 3 HOH 23 156 156 HOH HOH A . G 3 HOH 24 157 157 HOH HOH A . G 3 HOH 25 159 159 HOH HOH A . G 3 HOH 26 160 160 HOH HOH A . G 3 HOH 27 192 192 HOH HOH A . G 3 HOH 28 193 193 HOH HOH A . G 3 HOH 29 194 194 HOH HOH A . G 3 HOH 30 195 195 HOH HOH A . G 3 HOH 31 196 196 HOH HOH A . G 3 HOH 32 197 197 HOH HOH A . G 3 HOH 33 198 198 HOH HOH A . H 3 HOH 1 5 5 HOH HOH B . H 3 HOH 2 7 7 HOH HOH B . H 3 HOH 3 13 13 HOH HOH B . H 3 HOH 4 18 18 HOH HOH B . H 3 HOH 5 24 24 HOH HOH B . H 3 HOH 6 28 28 HOH HOH B . H 3 HOH 7 30 30 HOH HOH B . H 3 HOH 8 33 33 HOH HOH B . H 3 HOH 9 35 35 HOH HOH B . H 3 HOH 10 36 36 HOH HOH B . H 3 HOH 11 37 37 HOH HOH B . H 3 HOH 12 40 40 HOH HOH B . H 3 HOH 13 42 42 HOH HOH B . H 3 HOH 14 53 53 HOH HOH B . H 3 HOH 15 54 54 HOH HOH B . H 3 HOH 16 60 60 HOH HOH B . H 3 HOH 17 74 74 HOH HOH B . H 3 HOH 18 77 77 HOH HOH B . H 3 HOH 19 81 81 HOH HOH B . H 3 HOH 20 86 86 HOH HOH B . H 3 HOH 21 87 87 HOH HOH B . H 3 HOH 22 88 88 HOH HOH B . H 3 HOH 23 91 91 HOH HOH B . H 3 HOH 24 95 95 HOH HOH B . H 3 HOH 25 96 96 HOH HOH B . H 3 HOH 26 104 104 HOH HOH B . H 3 HOH 27 106 106 HOH HOH B . H 3 HOH 28 107 107 HOH HOH B . H 3 HOH 29 108 108 HOH HOH B . H 3 HOH 30 117 117 HOH HOH B . H 3 HOH 31 118 118 HOH HOH B . H 3 HOH 32 120 120 HOH HOH B . H 3 HOH 33 121 121 HOH HOH B . H 3 HOH 34 122 122 HOH HOH B . H 3 HOH 35 123 123 HOH HOH B . H 3 HOH 36 125 125 HOH HOH B . H 3 HOH 37 150 150 HOH HOH B . H 3 HOH 38 158 158 HOH HOH B . H 3 HOH 39 162 162 HOH HOH B . H 3 HOH 40 163 163 HOH HOH B . H 3 HOH 41 164 164 HOH HOH B . H 3 HOH 42 166 166 HOH HOH B . H 3 HOH 43 167 167 HOH HOH B . H 3 HOH 44 168 168 HOH HOH B . H 3 HOH 45 169 169 HOH HOH B . H 3 HOH 46 171 171 HOH HOH B . H 3 HOH 47 199 199 HOH HOH B . I 3 HOH 1 19 19 HOH HOH C . I 3 HOH 2 26 26 HOH HOH C . I 3 HOH 3 29 29 HOH HOH C . I 3 HOH 4 31 31 HOH HOH C . I 3 HOH 5 39 39 HOH HOH C . I 3 HOH 6 61 61 HOH HOH C . I 3 HOH 7 64 64 HOH HOH C . I 3 HOH 8 78 78 HOH HOH C . I 3 HOH 9 79 79 HOH HOH C . I 3 HOH 10 82 82 HOH HOH C . I 3 HOH 11 92 92 HOH HOH C . I 3 HOH 12 97 97 HOH HOH C . I 3 HOH 13 127 127 HOH HOH C . I 3 HOH 14 132 132 HOH HOH C . I 3 HOH 15 133 133 HOH HOH C . I 3 HOH 16 134 134 HOH HOH C . I 3 HOH 17 165 165 HOH HOH C . I 3 HOH 18 170 170 HOH HOH C . I 3 HOH 19 174 174 HOH HOH C . I 3 HOH 20 176 176 HOH HOH C . I 3 HOH 21 177 177 HOH HOH C . I 3 HOH 22 178 178 HOH HOH C . I 3 HOH 23 189 189 HOH HOH C . I 3 HOH 24 200 200 HOH HOH C . I 3 HOH 25 201 201 HOH HOH C . I 3 HOH 26 202 202 HOH HOH C . J 3 HOH 1 3 3 HOH HOH D . J 3 HOH 2 14 14 HOH HOH D . J 3 HOH 3 15 15 HOH HOH D . J 3 HOH 4 16 16 HOH HOH D . J 3 HOH 5 25 25 HOH HOH D . J 3 HOH 6 45 45 HOH HOH D . J 3 HOH 7 80 80 HOH HOH D . J 3 HOH 8 93 93 HOH HOH D . J 3 HOH 9 98 98 HOH HOH D . J 3 HOH 10 102 102 HOH HOH D . J 3 HOH 11 128 128 HOH HOH D . J 3 HOH 12 129 129 HOH HOH D . J 3 HOH 13 130 130 HOH HOH D . J 3 HOH 14 135 135 HOH HOH D . J 3 HOH 15 136 136 HOH HOH D . J 3 HOH 16 137 137 HOH HOH D . J 3 HOH 17 139 139 HOH HOH D . J 3 HOH 18 140 140 HOH HOH D . J 3 HOH 19 175 175 HOH HOH D . J 3 HOH 20 181 181 HOH HOH D . J 3 HOH 21 182 182 HOH HOH D . J 3 HOH 22 183 183 HOH HOH D . J 3 HOH 23 184 184 HOH HOH D . J 3 HOH 24 185 185 HOH HOH D . J 3 HOH 25 186 186 HOH HOH D . J 3 HOH 26 203 203 HOH HOH D . J 3 HOH 27 204 204 HOH HOH D . J 3 HOH 28 205 205 HOH HOH D . J 3 HOH 29 206 206 HOH HOH D . J 3 HOH 30 207 207 HOH HOH D . K 3 HOH 1 4 4 HOH HOH E . K 3 HOH 2 12 12 HOH HOH E . K 3 HOH 3 17 17 HOH HOH E . K 3 HOH 4 34 34 HOH HOH E . K 3 HOH 5 41 41 HOH HOH E . K 3 HOH 6 44 44 HOH HOH E . K 3 HOH 7 47 47 HOH HOH E . K 3 HOH 8 69 69 HOH HOH E . K 3 HOH 9 83 83 HOH HOH E . K 3 HOH 10 94 94 HOH HOH E . K 3 HOH 11 101 101 HOH HOH E . K 3 HOH 12 141 141 HOH HOH E . K 3 HOH 13 142 142 HOH HOH E . K 3 HOH 14 143 143 HOH HOH E . K 3 HOH 15 172 172 HOH HOH E . K 3 HOH 16 173 173 HOH HOH E . K 3 HOH 17 187 187 HOH HOH E . K 3 HOH 18 188 188 HOH HOH E . K 3 HOH 19 208 208 HOH HOH E . K 3 HOH 20 209 209 HOH HOH E . K 3 HOH 21 210 210 HOH HOH E . L 3 HOH 1 2 2 HOH HOH F . L 3 HOH 2 8 8 HOH HOH F . L 3 HOH 3 10 10 HOH HOH F . L 3 HOH 4 20 20 HOH HOH F . L 3 HOH 5 22 22 HOH HOH F . L 3 HOH 6 27 27 HOH HOH F . L 3 HOH 7 32 32 HOH HOH F . L 3 HOH 8 38 38 HOH HOH F . L 3 HOH 9 46 46 HOH HOH F . L 3 HOH 10 48 48 HOH HOH F . L 3 HOH 11 51 51 HOH HOH F . L 3 HOH 12 58 58 HOH HOH F . L 3 HOH 13 70 70 HOH HOH F . L 3 HOH 14 71 71 HOH HOH F . L 3 HOH 15 73 73 HOH HOH F . L 3 HOH 16 89 89 HOH HOH F . L 3 HOH 17 99 99 HOH HOH F . L 3 HOH 18 114 114 HOH HOH F . L 3 HOH 19 116 116 HOH HOH F . L 3 HOH 20 144 144 HOH HOH F . L 3 HOH 21 145 145 HOH HOH F . L 3 HOH 22 146 146 HOH HOH F . L 3 HOH 23 147 147 HOH HOH F . L 3 HOH 24 148 148 HOH HOH F . L 3 HOH 25 152 152 HOH HOH F . L 3 HOH 26 161 161 HOH HOH F . L 3 HOH 27 190 190 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12850 ? 1 MORE -83 ? 1 'SSA (A^2)' 10870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-08-19 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_ref_seq_dif.details' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.851 ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing 3.851 ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE C ARG 579 ? ? CZ C ARG 579 ? ? NH2 C ARG 579 ? ? 123.79 120.30 3.49 0.50 N 2 1 NE E ARG 579 ? ? CZ E ARG 579 ? ? NH2 E ARG 579 ? ? 123.67 120.30 3.37 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU D 659 ? ? -45.05 -70.64 2 1 LEU D 660 ? ? -65.01 68.48 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 B TYR 658 ? CG ? B TYR 32 CG 2 1 Y 0 B TYR 658 ? CD1 ? B TYR 32 CD1 3 1 Y 0 B TYR 658 ? CD2 ? B TYR 32 CD2 4 1 Y 0 B TYR 658 ? CE1 ? B TYR 32 CE1 5 1 Y 0 B TYR 658 ? CE2 ? B TYR 32 CE2 6 1 Y 0 B TYR 658 ? CZ ? B TYR 32 CZ 7 1 Y 0 B TYR 658 ? OH ? B TYR 32 OH 8 1 Y 0 F TYR 658 ? CG ? F TYR 32 CG 9 1 Y 0 F TYR 658 ? CD1 ? F TYR 32 CD1 10 1 Y 0 F TYR 658 ? CD2 ? F TYR 32 CD2 11 1 Y 0 F TYR 658 ? CE1 ? F TYR 32 CE1 12 1 Y 0 F TYR 658 ? CE2 ? F TYR 32 CE2 13 1 Y 0 F TYR 658 ? CZ ? F TYR 32 CZ 14 1 Y 0 F TYR 658 ? OH ? F TYR 32 OH # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AIK _pdbx_initial_refinement_model.details 'PDB ENTRY 1AIK' #