data_2V54 # _entry.id 2V54 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2V54 pdb_00002v54 10.2210/pdb2v54/pdb PDBE EBI-37696 ? ? WWPDB D_1290037696 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2W0S _pdbx_database_related.content_type unspecified _pdbx_database_related.details ;CRYSTAL STRUCTURE OF VACCINIA VIRUS THYMIDYLATE KINASE BOUND TO BRIVUDIN-5'- MONOPHOSPHATE ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V54 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-10-01 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Caillat, C.' 1 'Topalis, D.' 2 'Agrofoglio, L.A.' 3 'Pochet, S.' 4 'Balzarini, J.' 5 'Deville-Bonne, D.' 6 'Meyer, P.' 7 # _citation.id primary _citation.title 'Crystal Structure of Poxvirus Thymidylate Kinase: An Unexpected Dimerization Has Implications for Antiviral Therapy' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 105 _citation.page_first 16900 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18971333 _citation.pdbx_database_id_DOI 10.1073/PNAS.0804525105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Caillat, C.' 1 ? primary 'Topalis, D.' 2 ? primary 'Agrofoglio, L.A.' 3 ? primary 'Pochet, S.' 4 ? primary 'Balzarini, J.' 5 ? primary 'Deville-Bonne, D.' 6 ? primary 'Meyer, P.' 7 ? # _cell.entry_id 2V54 _cell.length_a 56.770 _cell.length_b 55.590 _cell.length_c 161.170 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V54 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'THYMIDYLATE KINASE' 23243.582 2 2.7.4.9 ? ? ? 2 non-polymer syn "THYMIDINE-5'-DIPHOSPHATE" 402.188 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'PYROPHOSPHATE 2-' 175.959 1 ? ? ? ? 5 water nat water 18.015 107 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DTMP KINASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQ EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKVLQEYKKM IEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTVTGPVGQLWM ; _entity_poly.pdbx_seq_one_letter_code_can ;MSRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQ EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKVLQEYKKM IEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTVTGPVGQLWM ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 ARG n 1 4 GLY n 1 5 ALA n 1 6 LEU n 1 7 ILE n 1 8 VAL n 1 9 PHE n 1 10 GLU n 1 11 GLY n 1 12 LEU n 1 13 ASP n 1 14 LYS n 1 15 SER n 1 16 GLY n 1 17 LYS n 1 18 THR n 1 19 THR n 1 20 GLN n 1 21 CYS n 1 22 MET n 1 23 ASN n 1 24 ILE n 1 25 MET n 1 26 GLU n 1 27 SER n 1 28 ILE n 1 29 PRO n 1 30 ALA n 1 31 ASN n 1 32 THR n 1 33 ILE n 1 34 LYS n 1 35 TYR n 1 36 LEU n 1 37 ASN n 1 38 PHE n 1 39 PRO n 1 40 GLN n 1 41 ARG n 1 42 SER n 1 43 THR n 1 44 VAL n 1 45 THR n 1 46 GLY n 1 47 LYS n 1 48 MET n 1 49 ILE n 1 50 ASP n 1 51 ASP n 1 52 TYR n 1 53 LEU n 1 54 THR n 1 55 ARG n 1 56 LYS n 1 57 LYS n 1 58 THR n 1 59 TYR n 1 60 ASN n 1 61 ASP n 1 62 HIS n 1 63 ILE n 1 64 VAL n 1 65 ASN n 1 66 LEU n 1 67 LEU n 1 68 PHE n 1 69 CYS n 1 70 ALA n 1 71 ASN n 1 72 ARG n 1 73 TRP n 1 74 GLU n 1 75 PHE n 1 76 ALA n 1 77 SER n 1 78 PHE n 1 79 ILE n 1 80 GLN n 1 81 GLU n 1 82 GLN n 1 83 LEU n 1 84 GLU n 1 85 GLN n 1 86 GLY n 1 87 ILE n 1 88 THR n 1 89 LEU n 1 90 ILE n 1 91 VAL n 1 92 ASP n 1 93 ARG n 1 94 TYR n 1 95 ALA n 1 96 PHE n 1 97 SER n 1 98 GLY n 1 99 VAL n 1 100 ALA n 1 101 TYR n 1 102 ALA n 1 103 ALA n 1 104 ALA n 1 105 LYS n 1 106 GLY n 1 107 ALA n 1 108 SER n 1 109 MET n 1 110 THR n 1 111 LEU n 1 112 SER n 1 113 LYS n 1 114 SER n 1 115 TYR n 1 116 GLU n 1 117 SER n 1 118 GLY n 1 119 LEU n 1 120 PRO n 1 121 LYS n 1 122 PRO n 1 123 ASP n 1 124 LEU n 1 125 VAL n 1 126 ILE n 1 127 PHE n 1 128 LEU n 1 129 GLU n 1 130 SER n 1 131 GLY n 1 132 SER n 1 133 LYS n 1 134 GLU n 1 135 ILE n 1 136 ASN n 1 137 ARG n 1 138 ASN n 1 139 VAL n 1 140 GLY n 1 141 GLU n 1 142 GLU n 1 143 ILE n 1 144 TYR n 1 145 GLU n 1 146 ASP n 1 147 VAL n 1 148 THR n 1 149 PHE n 1 150 GLN n 1 151 GLN n 1 152 LYS n 1 153 VAL n 1 154 LEU n 1 155 GLN n 1 156 GLU n 1 157 TYR n 1 158 LYS n 1 159 LYS n 1 160 MET n 1 161 ILE n 1 162 GLU n 1 163 GLU n 1 164 GLY n 1 165 ASP n 1 166 ILE n 1 167 HIS n 1 168 TRP n 1 169 GLN n 1 170 ILE n 1 171 ILE n 1 172 SER n 1 173 SER n 1 174 GLU n 1 175 PHE n 1 176 GLU n 1 177 GLU n 1 178 ASP n 1 179 VAL n 1 180 LYS n 1 181 LYS n 1 182 GLU n 1 183 LEU n 1 184 ILE n 1 185 LYS n 1 186 ASN n 1 187 ILE n 1 188 VAL n 1 189 ILE n 1 190 GLU n 1 191 ALA n 1 192 ILE n 1 193 HIS n 1 194 THR n 1 195 VAL n 1 196 THR n 1 197 GLY n 1 198 PRO n 1 199 VAL n 1 200 GLY n 1 201 GLN n 1 202 LEU n 1 203 TRP n 1 204 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'VACCINIA VIRUS COPENHAGEN' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10249 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) ROSETTA PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KTHY_VACCC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P68693 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V54 A 1 ? 204 ? P68693 1 ? 204 ? 1 204 2 1 2V54 B 1 ? 204 ? P68693 1 ? 204 ? 1 204 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 POP non-polymer . 'PYROPHOSPHATE 2-' ? 'H2 O7 P2 -2' 175.959 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYD non-polymer . "THYMIDINE-5'-DIPHOSPHATE" ? 'C10 H16 N2 O11 P2' 402.188 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V54 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 55.5 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '23% PEG 400, 100 MM NA ACETATE, 100 MM MES PH 6.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.934 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V54 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.40 _reflns.number_obs 79520 _reflns.number_all ? _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.30 _reflns.B_iso_Wilson_estimate 46 _reflns.pdbx_redundancy 4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.55 _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_obs 0.59 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.25 _reflns_shell.pdbx_redundancy 4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V54 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20139 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs 97.4 _refine.ls_R_factor_obs 0.2163 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2163 _refine.ls_R_factor_R_free 0.2760 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1024 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.63 _refine.aniso_B[1][1] 0.569 _refine.aniso_B[2][2] 10.451 _refine.aniso_B[3][3] -11.021 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 34.9287 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1E2G' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3247 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 60 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 3414 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007289 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.32742 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.4 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 867 _refine_ls_shell.R_factor_R_work 0.277 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.294 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5 _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 DTDP_CNS.PARAM DTDP_CNS.TOPH 'X-RAY DIFFRACTION' 5 POP_CNS.PARAM POP_CNS.TOPH # _struct.entry_id 2V54 _struct.title 'Crystal structure of vaccinia virus thymidylate kinase bound to TDP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V54 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'NUCLEOTIDE BIOSYNTHESIS, ATP-BINDING, NUCLEOTIDE-BINDING, KINASE, POXVIRUS, TMP KINASE, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 16 ? SER A 27 ? GLY A 16 SER A 27 1 ? 12 HELX_P HELX_P2 2 PRO A 29 ? ASN A 31 ? PRO A 29 ASN A 31 5 ? 3 HELX_P HELX_P3 3 THR A 43 ? THR A 54 ? THR A 43 THR A 54 1 ? 12 HELX_P HELX_P4 4 ASN A 60 ? GLU A 74 ? ASN A 60 GLU A 74 1 ? 15 HELX_P HELX_P5 5 PHE A 75 ? GLN A 85 ? PHE A 75 GLN A 85 1 ? 11 HELX_P HELX_P6 6 TYR A 94 ? LYS A 105 ? TYR A 94 LYS A 105 1 ? 12 HELX_P HELX_P7 7 SER A 108 ? SER A 117 ? SER A 108 SER A 117 1 ? 10 HELX_P HELX_P8 8 GLY A 131 ? ASN A 136 ? GLY A 131 ASN A 136 1 ? 6 HELX_P HELX_P9 9 VAL A 147 ? GLU A 162 ? VAL A 147 GLU A 162 1 ? 16 HELX_P HELX_P10 10 GLU A 176 ? VAL A 195 ? GLU A 176 VAL A 195 1 ? 20 HELX_P HELX_P11 11 GLY B 16 ? SER B 27 ? GLY B 16 SER B 27 1 ? 12 HELX_P HELX_P12 12 THR B 43 ? THR B 54 ? THR B 43 THR B 54 1 ? 12 HELX_P HELX_P13 13 ASN B 60 ? GLU B 74 ? ASN B 60 GLU B 74 1 ? 15 HELX_P HELX_P14 14 PHE B 75 ? GLN B 85 ? PHE B 75 GLN B 85 1 ? 11 HELX_P HELX_P15 15 TYR B 94 ? LYS B 105 ? TYR B 94 LYS B 105 1 ? 12 HELX_P HELX_P16 16 SER B 108 ? SER B 117 ? SER B 108 SER B 117 1 ? 10 HELX_P HELX_P17 17 GLY B 131 ? ARG B 137 ? GLY B 131 ARG B 137 1 ? 7 HELX_P HELX_P18 18 ASP B 146 ? GLU B 163 ? ASP B 146 GLU B 163 1 ? 18 HELX_P HELX_P19 19 GLU B 176 ? HIS B 193 ? GLU B 176 HIS B 193 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B ASP 13 OD1 ? ? ? 1_555 D MG . MG ? ? B ASP 13 B MG 1205 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc2 metalc ? ? B GLU 145 OE2 ? ? ? 1_555 D MG . MG ? ? B GLU 145 B MG 1205 1_555 ? ? ? ? ? ? ? 2.536 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 E POP . O4 B ? B MG 1205 B POP 1206 1_555 ? ? ? ? ? ? ? 2.260 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 F TYD . O2B A ? B MG 1205 B TYD 1207 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 1205 B HOH 2046 1_555 ? ? ? ? ? ? ? 1.841 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 38 A . ? PHE 38 A PRO 39 A ? PRO 39 A 1 0.09 2 PHE 38 B . ? PHE 38 B PRO 39 B ? PRO 39 B 1 -0.15 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? BA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel BA 1 2 ? parallel BA 2 3 ? parallel BA 3 4 ? parallel BA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 33 ? ASN A 37 ? ILE A 33 ASN A 37 AA 2 THR A 88 ? ASP A 92 ? THR A 88 ASP A 92 AA 3 LEU A 6 ? GLU A 10 ? LEU A 6 GLU A 10 AA 4 LEU A 124 ? LEU A 128 ? LEU A 124 LEU A 128 AA 5 TRP A 168 ? ILE A 171 ? TRP A 168 ILE A 171 BA 1 ILE B 33 ? ASN B 37 ? ILE B 33 ASN B 37 BA 2 THR B 88 ? ASP B 92 ? THR B 88 ASP B 92 BA 3 LEU B 6 ? GLY B 11 ? LEU B 6 GLY B 11 BA 4 LEU B 124 ? LEU B 128 ? LEU B 124 LEU B 128 BA 5 TRP B 168 ? ILE B 171 ? TRP B 168 ILE B 171 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 34 ? N LYS A 34 O THR A 88 ? O THR A 88 AA 2 3 N VAL A 91 ? N VAL A 91 O ILE A 7 ? O ILE A 7 AA 3 4 N VAL A 8 ? N VAL A 8 O LEU A 124 ? O LEU A 124 AA 4 5 N PHE A 127 ? N PHE A 127 O GLN A 169 ? O GLN A 169 BA 1 2 N LYS B 34 ? N LYS B 34 O THR B 88 ? O THR B 88 BA 2 3 N VAL B 91 ? N VAL B 91 O ILE B 7 ? O ILE B 7 BA 3 4 N VAL B 8 ? N VAL B 8 O LEU B 124 ? O LEU B 124 BA 4 5 N PHE B 127 ? N PHE B 127 O GLN B 169 ? O GLN B 169 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 1205 ? 5 'BINDING SITE FOR RESIDUE MG B 1205' AC2 Software A TYD 1205 ? 18 'BINDING SITE FOR RESIDUE TYD A 1205' AC3 Software B POP 1206 ? 9 'BINDING SITE FOR RESIDUE POP B 1206' AC4 Software B TYD 1207 ? 18 'BINDING SITE FOR RESIDUE TYD B 1207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP B 13 ? ASP B 13 . ? 1_555 ? 2 AC1 5 GLU B 145 ? GLU B 145 . ? 1_555 ? 3 AC1 5 POP E . ? POP B 1206 . ? 1_555 ? 4 AC1 5 TYD F . ? TYD B 1207 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH B 2046 . ? 1_555 ? 6 AC2 18 ASP A 13 ? ASP A 13 . ? 1_555 ? 7 AC2 18 LYS A 17 ? LYS A 17 . ? 1_555 ? 8 AC2 18 THR A 18 ? THR A 18 . ? 1_555 ? 9 AC2 18 ASN A 37 ? ASN A 37 . ? 1_555 ? 10 AC2 18 PHE A 38 ? PHE A 38 . ? 1_555 ? 11 AC2 18 PRO A 39 ? PRO A 39 . ? 1_555 ? 12 AC2 18 ARG A 41 ? ARG A 41 . ? 1_555 ? 13 AC2 18 LEU A 53 ? LEU A 53 . ? 1_555 ? 14 AC2 18 PHE A 68 ? PHE A 68 . ? 1_555 ? 15 AC2 18 ARG A 72 ? ARG A 72 . ? 1_555 ? 16 AC2 18 ASP A 92 ? ASP A 92 . ? 1_555 ? 17 AC2 18 ARG A 93 ? ARG A 93 . ? 1_555 ? 18 AC2 18 GLY A 98 ? GLY A 98 . ? 1_555 ? 19 AC2 18 TYR A 101 ? TYR A 101 . ? 1_555 ? 20 AC2 18 TYR A 144 ? TYR A 144 . ? 1_555 ? 21 AC2 18 HOH G . ? HOH A 2009 . ? 1_555 ? 22 AC2 18 HOH G . ? HOH A 2024 . ? 1_555 ? 23 AC2 18 HOH G . ? HOH A 2046 . ? 1_555 ? 24 AC3 9 LYS B 14 ? LYS B 14 . ? 1_555 ? 25 AC3 9 SER B 15 ? SER B 15 . ? 1_555 ? 26 AC3 9 GLY B 16 ? GLY B 16 . ? 1_555 ? 27 AC3 9 LYS B 17 ? LYS B 17 . ? 1_555 ? 28 AC3 9 THR B 18 ? THR B 18 . ? 1_555 ? 29 AC3 9 GLU B 145 ? GLU B 145 . ? 1_555 ? 30 AC3 9 MG D . ? MG B 1205 . ? 1_555 ? 31 AC3 9 TYD F . ? TYD B 1207 . ? 1_555 ? 32 AC3 9 HOH H . ? HOH B 2005 . ? 1_555 ? 33 AC4 18 ASP B 13 ? ASP B 13 . ? 1_555 ? 34 AC4 18 LYS B 17 ? LYS B 17 . ? 1_555 ? 35 AC4 18 PHE B 38 ? PHE B 38 . ? 1_555 ? 36 AC4 18 PRO B 39 ? PRO B 39 . ? 1_555 ? 37 AC4 18 ARG B 41 ? ARG B 41 . ? 1_555 ? 38 AC4 18 LEU B 53 ? LEU B 53 . ? 1_555 ? 39 AC4 18 PHE B 68 ? PHE B 68 . ? 1_555 ? 40 AC4 18 ARG B 72 ? ARG B 72 . ? 1_555 ? 41 AC4 18 ARG B 93 ? ARG B 93 . ? 1_555 ? 42 AC4 18 SER B 97 ? SER B 97 . ? 1_555 ? 43 AC4 18 GLY B 98 ? GLY B 98 . ? 1_555 ? 44 AC4 18 TYR B 101 ? TYR B 101 . ? 1_555 ? 45 AC4 18 TYR B 144 ? TYR B 144 . ? 1_555 ? 46 AC4 18 MG D . ? MG B 1205 . ? 1_555 ? 47 AC4 18 POP E . ? POP B 1206 . ? 1_555 ? 48 AC4 18 HOH H . ? HOH B 2009 . ? 1_555 ? 49 AC4 18 HOH H . ? HOH B 2028 . ? 1_555 ? 50 AC4 18 HOH H . ? HOH B 2046 . ? 1_555 ? # _database_PDB_matrix.entry_id 2V54 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V54 _atom_sites.fract_transf_matrix[1][1] 0.017615 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017989 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006205 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 TRP 73 73 73 TRP TRP A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 TYR 144 144 144 TYR TYR A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 GLN 150 150 150 GLN GLN A . n A 1 151 GLN 151 151 151 GLN GLN A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 MET 160 160 160 MET MET A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 HIS 167 167 167 HIS HIS A . n A 1 168 TRP 168 168 168 TRP TRP A . n A 1 169 GLN 169 169 169 GLN GLN A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 SER 172 172 172 SER SER A . n A 1 173 SER 173 173 173 SER SER A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ASP 178 178 178 ASP ASP A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 LYS 185 185 185 LYS LYS A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 ILE 192 192 192 ILE ILE A . n A 1 193 HIS 193 193 193 HIS HIS A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 VAL 195 195 195 VAL VAL A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 GLN 201 201 201 GLN GLN A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 TRP 203 203 203 TRP TRP A . n A 1 204 MET 204 204 204 MET MET A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 ARG 3 3 3 ARG ARG B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 ILE 7 7 7 ILE ILE B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 PHE 9 9 9 PHE PHE B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ASP 13 13 13 ASP ASP B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 LYS 17 17 17 LYS LYS B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 GLN 20 20 20 GLN GLN B . n B 1 21 CYS 21 21 21 CYS CYS B . n B 1 22 MET 22 22 22 MET MET B . n B 1 23 ASN 23 23 23 ASN ASN B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 MET 25 25 25 MET MET B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 PRO 29 29 29 PRO PRO B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 ASN 31 31 31 ASN ASN B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 TYR 35 35 35 TYR TYR B . n B 1 36 LEU 36 36 36 LEU LEU B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 PHE 38 38 38 PHE PHE B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLN 40 40 40 GLN GLN B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 SER 42 42 42 SER SER B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 LYS 47 47 47 LYS LYS B . n B 1 48 MET 48 48 48 MET MET B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 ASP 50 50 50 ASP ASP B . n B 1 51 ASP 51 51 51 ASP ASP B . n B 1 52 TYR 52 52 52 TYR TYR B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 THR 54 54 54 THR THR B . n B 1 55 ARG 55 55 55 ARG ARG B . n B 1 56 LYS 56 56 56 LYS LYS B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASN 60 60 60 ASN ASN B . n B 1 61 ASP 61 61 61 ASP ASP B . n B 1 62 HIS 62 62 62 HIS HIS B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 LEU 67 67 67 LEU LEU B . n B 1 68 PHE 68 68 68 PHE PHE B . n B 1 69 CYS 69 69 69 CYS CYS B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 ASN 71 71 71 ASN ASN B . n B 1 72 ARG 72 72 72 ARG ARG B . n B 1 73 TRP 73 73 73 TRP TRP B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 PHE 75 75 75 PHE PHE B . n B 1 76 ALA 76 76 76 ALA ALA B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 PHE 78 78 78 PHE PHE B . n B 1 79 ILE 79 79 79 ILE ILE B . n B 1 80 GLN 80 80 80 GLN GLN B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 GLN 82 82 82 GLN GLN B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 GLN 85 85 85 GLN GLN B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ILE 87 87 87 ILE ILE B . n B 1 88 THR 88 88 88 THR THR B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 ILE 90 90 90 ILE ILE B . n B 1 91 VAL 91 91 91 VAL VAL B . n B 1 92 ASP 92 92 92 ASP ASP B . n B 1 93 ARG 93 93 93 ARG ARG B . n B 1 94 TYR 94 94 94 TYR TYR B . n B 1 95 ALA 95 95 95 ALA ALA B . n B 1 96 PHE 96 96 96 PHE PHE B . n B 1 97 SER 97 97 97 SER SER B . n B 1 98 GLY 98 98 98 GLY GLY B . n B 1 99 VAL 99 99 99 VAL VAL B . n B 1 100 ALA 100 100 100 ALA ALA B . n B 1 101 TYR 101 101 101 TYR TYR B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 ALA 103 103 103 ALA ALA B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 LYS 105 105 105 LYS LYS B . n B 1 106 GLY 106 106 106 GLY GLY B . n B 1 107 ALA 107 107 107 ALA ALA B . n B 1 108 SER 108 108 108 SER SER B . n B 1 109 MET 109 109 109 MET MET B . n B 1 110 THR 110 110 110 THR THR B . n B 1 111 LEU 111 111 111 LEU LEU B . n B 1 112 SER 112 112 112 SER SER B . n B 1 113 LYS 113 113 113 LYS LYS B . n B 1 114 SER 114 114 114 SER SER B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 GLU 116 116 116 GLU GLU B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 GLY 118 118 118 GLY GLY B . n B 1 119 LEU 119 119 119 LEU LEU B . n B 1 120 PRO 120 120 120 PRO PRO B . n B 1 121 LYS 121 121 121 LYS LYS B . n B 1 122 PRO 122 122 122 PRO PRO B . n B 1 123 ASP 123 123 123 ASP ASP B . n B 1 124 LEU 124 124 124 LEU LEU B . n B 1 125 VAL 125 125 125 VAL VAL B . n B 1 126 ILE 126 126 126 ILE ILE B . n B 1 127 PHE 127 127 127 PHE PHE B . n B 1 128 LEU 128 128 128 LEU LEU B . n B 1 129 GLU 129 129 129 GLU GLU B . n B 1 130 SER 130 130 130 SER SER B . n B 1 131 GLY 131 131 131 GLY GLY B . n B 1 132 SER 132 132 132 SER SER B . n B 1 133 LYS 133 133 133 LYS LYS B . n B 1 134 GLU 134 134 134 GLU GLU B . n B 1 135 ILE 135 135 135 ILE ILE B . n B 1 136 ASN 136 136 136 ASN ASN B . n B 1 137 ARG 137 137 137 ARG ARG B . n B 1 138 ASN 138 138 138 ASN ASN B . n B 1 139 VAL 139 139 139 VAL VAL B . n B 1 140 GLY 140 140 140 GLY GLY B . n B 1 141 GLU 141 141 141 GLU GLU B . n B 1 142 GLU 142 142 142 GLU GLU B . n B 1 143 ILE 143 143 143 ILE ILE B . n B 1 144 TYR 144 144 144 TYR TYR B . n B 1 145 GLU 145 145 145 GLU GLU B . n B 1 146 ASP 146 146 146 ASP ASP B . n B 1 147 VAL 147 147 147 VAL VAL B . n B 1 148 THR 148 148 148 THR THR B . n B 1 149 PHE 149 149 149 PHE PHE B . n B 1 150 GLN 150 150 150 GLN GLN B . n B 1 151 GLN 151 151 151 GLN GLN B . n B 1 152 LYS 152 152 152 LYS LYS B . n B 1 153 VAL 153 153 153 VAL VAL B . n B 1 154 LEU 154 154 154 LEU LEU B . n B 1 155 GLN 155 155 155 GLN GLN B . n B 1 156 GLU 156 156 156 GLU GLU B . n B 1 157 TYR 157 157 157 TYR TYR B . n B 1 158 LYS 158 158 158 LYS LYS B . n B 1 159 LYS 159 159 159 LYS LYS B . n B 1 160 MET 160 160 160 MET MET B . n B 1 161 ILE 161 161 161 ILE ILE B . n B 1 162 GLU 162 162 162 GLU GLU B . n B 1 163 GLU 163 163 163 GLU GLU B . n B 1 164 GLY 164 164 164 GLY GLY B . n B 1 165 ASP 165 165 165 ASP ASP B . n B 1 166 ILE 166 166 166 ILE ILE B . n B 1 167 HIS 167 167 167 HIS HIS B . n B 1 168 TRP 168 168 168 TRP TRP B . n B 1 169 GLN 169 169 169 GLN GLN B . n B 1 170 ILE 170 170 170 ILE ILE B . n B 1 171 ILE 171 171 171 ILE ILE B . n B 1 172 SER 172 172 172 SER SER B . n B 1 173 SER 173 173 173 SER SER B . n B 1 174 GLU 174 174 174 GLU GLU B . n B 1 175 PHE 175 175 175 PHE PHE B . n B 1 176 GLU 176 176 176 GLU GLU B . n B 1 177 GLU 177 177 177 GLU GLU B . n B 1 178 ASP 178 178 178 ASP ASP B . n B 1 179 VAL 179 179 179 VAL VAL B . n B 1 180 LYS 180 180 180 LYS LYS B . n B 1 181 LYS 181 181 181 LYS LYS B . n B 1 182 GLU 182 182 182 GLU GLU B . n B 1 183 LEU 183 183 183 LEU LEU B . n B 1 184 ILE 184 184 184 ILE ILE B . n B 1 185 LYS 185 185 185 LYS LYS B . n B 1 186 ASN 186 186 186 ASN ASN B . n B 1 187 ILE 187 187 187 ILE ILE B . n B 1 188 VAL 188 188 188 VAL VAL B . n B 1 189 ILE 189 189 189 ILE ILE B . n B 1 190 GLU 190 190 190 GLU GLU B . n B 1 191 ALA 191 191 191 ALA ALA B . n B 1 192 ILE 192 192 192 ILE ILE B . n B 1 193 HIS 193 193 193 HIS HIS B . n B 1 194 THR 194 194 194 THR THR B . n B 1 195 VAL 195 195 195 VAL VAL B . n B 1 196 THR 196 196 196 THR THR B . n B 1 197 GLY 197 197 197 GLY GLY B . n B 1 198 PRO 198 198 198 PRO PRO B . n B 1 199 VAL 199 199 199 VAL VAL B . n B 1 200 GLY 200 200 200 GLY GLY B . n B 1 201 GLN 201 201 201 GLN GLN B . n B 1 202 LEU 202 202 202 LEU LEU B . n B 1 203 TRP 203 203 203 TRP TRP B . n B 1 204 MET 204 204 204 MET MET B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TYD 1 1205 1205 TYD TYD A . D 3 MG 1 1205 1205 MG MG B . E 4 POP 1 1206 1206 POP POP B . F 2 TYD 1 1207 1207 TYD TYD B . G 5 HOH 1 2001 2001 HOH HOH A . G 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 3 2003 2003 HOH HOH A . G 5 HOH 4 2004 2004 HOH HOH A . G 5 HOH 5 2005 2005 HOH HOH A . G 5 HOH 6 2006 2006 HOH HOH A . G 5 HOH 7 2007 2007 HOH HOH A . G 5 HOH 8 2008 2008 HOH HOH A . G 5 HOH 9 2009 2009 HOH HOH A . G 5 HOH 10 2010 2010 HOH HOH A . G 5 HOH 11 2011 2011 HOH HOH A . G 5 HOH 12 2012 2012 HOH HOH A . G 5 HOH 13 2013 2013 HOH HOH A . G 5 HOH 14 2014 2014 HOH HOH A . G 5 HOH 15 2015 2015 HOH HOH A . G 5 HOH 16 2016 2016 HOH HOH A . G 5 HOH 17 2017 2017 HOH HOH A . G 5 HOH 18 2018 2018 HOH HOH A . G 5 HOH 19 2019 2019 HOH HOH A . G 5 HOH 20 2020 2020 HOH HOH A . G 5 HOH 21 2021 2021 HOH HOH A . G 5 HOH 22 2022 2022 HOH HOH A . G 5 HOH 23 2023 2023 HOH HOH A . G 5 HOH 24 2024 2024 HOH HOH A . G 5 HOH 25 2025 2025 HOH HOH A . G 5 HOH 26 2026 2026 HOH HOH A . G 5 HOH 27 2027 2027 HOH HOH A . G 5 HOH 28 2028 2028 HOH HOH A . G 5 HOH 29 2029 2029 HOH HOH A . G 5 HOH 30 2030 2030 HOH HOH A . G 5 HOH 31 2031 2031 HOH HOH A . G 5 HOH 32 2032 2032 HOH HOH A . G 5 HOH 33 2033 2033 HOH HOH A . G 5 HOH 34 2034 2034 HOH HOH A . G 5 HOH 35 2035 2035 HOH HOH A . G 5 HOH 36 2036 2036 HOH HOH A . G 5 HOH 37 2037 2037 HOH HOH A . G 5 HOH 38 2038 2038 HOH HOH A . G 5 HOH 39 2039 2039 HOH HOH A . G 5 HOH 40 2040 2040 HOH HOH A . G 5 HOH 41 2041 2041 HOH HOH A . G 5 HOH 42 2042 2042 HOH HOH A . G 5 HOH 43 2043 2043 HOH HOH A . G 5 HOH 44 2044 2044 HOH HOH A . G 5 HOH 45 2045 2045 HOH HOH A . G 5 HOH 46 2046 2046 HOH HOH A . H 5 HOH 1 2001 2001 HOH HOH B . H 5 HOH 2 2002 2002 HOH HOH B . H 5 HOH 3 2003 2003 HOH HOH B . H 5 HOH 4 2004 2004 HOH HOH B . H 5 HOH 5 2005 2005 HOH HOH B . H 5 HOH 6 2006 2006 HOH HOH B . H 5 HOH 7 2007 2007 HOH HOH B . H 5 HOH 8 2008 2008 HOH HOH B . H 5 HOH 9 2009 2009 HOH HOH B . H 5 HOH 10 2010 2010 HOH HOH B . H 5 HOH 11 2011 2011 HOH HOH B . H 5 HOH 12 2012 2012 HOH HOH B . H 5 HOH 13 2013 2013 HOH HOH B . H 5 HOH 14 2014 2014 HOH HOH B . H 5 HOH 15 2015 2015 HOH HOH B . H 5 HOH 16 2016 2016 HOH HOH B . H 5 HOH 17 2017 2017 HOH HOH B . H 5 HOH 18 2018 2018 HOH HOH B . H 5 HOH 19 2019 2019 HOH HOH B . H 5 HOH 20 2020 2020 HOH HOH B . H 5 HOH 21 2021 2021 HOH HOH B . H 5 HOH 22 2022 2022 HOH HOH B . H 5 HOH 23 2023 2023 HOH HOH B . H 5 HOH 24 2024 2024 HOH HOH B . H 5 HOH 25 2025 2025 HOH HOH B . H 5 HOH 26 2026 2026 HOH HOH B . H 5 HOH 27 2027 2027 HOH HOH B . H 5 HOH 28 2028 2028 HOH HOH B . H 5 HOH 29 2029 2029 HOH HOH B . H 5 HOH 30 2030 2030 HOH HOH B . H 5 HOH 31 2031 2031 HOH HOH B . H 5 HOH 32 2032 2032 HOH HOH B . H 5 HOH 33 2033 2033 HOH HOH B . H 5 HOH 34 2034 2034 HOH HOH B . H 5 HOH 35 2035 2035 HOH HOH B . H 5 HOH 36 2036 2036 HOH HOH B . H 5 HOH 37 2037 2037 HOH HOH B . H 5 HOH 38 2038 2038 HOH HOH B . H 5 HOH 39 2039 2039 HOH HOH B . H 5 HOH 40 2040 2040 HOH HOH B . H 5 HOH 41 2041 2041 HOH HOH B . H 5 HOH 42 2042 2042 HOH HOH B . H 5 HOH 43 2043 2043 HOH HOH B . H 5 HOH 44 2044 2044 HOH HOH B . H 5 HOH 45 2045 2045 HOH HOH B . H 5 HOH 46 2046 2046 HOH HOH B . H 5 HOH 47 2047 2047 HOH HOH B . H 5 HOH 48 2048 2048 HOH HOH B . H 5 HOH 49 2049 2049 HOH HOH B . H 5 HOH 50 2050 2050 HOH HOH B . H 5 HOH 51 2051 2051 HOH HOH B . H 5 HOH 52 2052 2052 HOH HOH B . H 5 HOH 53 2053 2053 HOH HOH B . H 5 HOH 54 2054 2054 HOH HOH B . H 5 HOH 55 2055 2055 HOH HOH B . H 5 HOH 56 2056 2056 HOH HOH B . H 5 HOH 57 2057 2057 HOH HOH B . H 5 HOH 58 2058 2058 HOH HOH B . H 5 HOH 59 2059 2059 HOH HOH B . H 5 HOH 60 2060 2060 HOH HOH B . H 5 HOH 61 2061 2061 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3680 ? 1 MORE -49.11 ? 1 'SSA (A^2)' 17450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? B ASP 13 ? B ASP 13 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 OE2 ? B GLU 145 ? B GLU 145 ? 1_555 95.8 ? 2 OD1 ? B ASP 13 ? B ASP 13 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O4 B E POP . ? B POP 1206 ? 1_555 109.3 ? 3 OE2 ? B GLU 145 ? B GLU 145 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O4 B E POP . ? B POP 1206 ? 1_555 92.6 ? 4 OD1 ? B ASP 13 ? B ASP 13 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O2B A F TYD . ? B TYD 1207 ? 1_555 75.3 ? 5 OE2 ? B GLU 145 ? B GLU 145 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O2B A F TYD . ? B TYD 1207 ? 1_555 170.6 ? 6 O4 B E POP . ? B POP 1206 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O2B A F TYD . ? B TYD 1207 ? 1_555 87.5 ? 7 OD1 ? B ASP 13 ? B ASP 13 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O ? H HOH . ? B HOH 2046 ? 1_555 80.5 ? 8 OE2 ? B GLU 145 ? B GLU 145 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O ? H HOH . ? B HOH 2046 ? 1_555 78.4 ? 9 O4 B E POP . ? B POP 1206 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O ? H HOH . ? B HOH 2046 ? 1_555 167.5 ? 10 O2B A F TYD . ? B TYD 1207 ? 1_555 MG ? D MG . ? B MG 1205 ? 1_555 O ? H HOH . ? B HOH 2046 ? 1_555 102.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-21 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.value' 15 4 'Structure model' '_struct_conn.pdbx_dist_value' 16 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.2 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2V54 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THYMIDINE-5'-DIPHOSPHATE (TYD): ALTERNATE CONFORMATION WITH POP 160 PYROPHOSPHATE (POP): ALTERNATE CONFORMATION WITH TYD 160 ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 27 ? ? -98.47 36.01 2 1 PRO A 29 ? ? -42.07 107.67 3 1 ARG A 41 ? ? -67.79 9.98 4 1 ARG A 55 ? ? 67.54 -20.92 5 1 LYS A 56 ? ? -69.86 25.81 6 1 LYS A 57 ? ? 169.39 142.59 7 1 ARG A 93 ? ? 74.94 143.59 8 1 TYR A 94 ? ? -150.97 -149.91 9 1 PRO B 29 ? ? -37.50 98.75 10 1 ALA B 30 ? ? -38.15 -21.30 11 1 ARG B 41 ? ? -68.43 11.31 12 1 ARG B 93 ? ? 72.75 140.67 13 1 TYR B 94 ? ? -152.24 -151.33 14 1 ASP B 165 ? ? -59.68 -83.20 15 1 TRP B 203 ? ? 35.39 53.91 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2004 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.08 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 31 ? CB ? A ASN 31 CB 2 1 Y 1 A ASN 31 ? CG ? A ASN 31 CG 3 1 Y 1 A ASN 31 ? OD1 ? A ASN 31 OD1 4 1 Y 1 A ASN 31 ? ND2 ? A ASN 31 ND2 5 1 Y 1 A LYS 133 ? CB ? A LYS 133 CB 6 1 Y 1 A LYS 133 ? CG ? A LYS 133 CG 7 1 Y 1 A LYS 133 ? CD ? A LYS 133 CD 8 1 Y 1 A LYS 133 ? CE ? A LYS 133 CE 9 1 Y 1 A LYS 133 ? NZ ? A LYS 133 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MG MG MG N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 POP P1 P N N 274 POP O1 O N N 275 POP O2 O N N 276 POP O3 O N N 277 POP O O N N 278 POP P2 P N N 279 POP O4 O N N 280 POP O5 O N N 281 POP O6 O N N 282 POP HO2 H N N 283 POP HO5 H N N 284 PRO N N N N 285 PRO CA C N S 286 PRO C C N N 287 PRO O O N N 288 PRO CB C N N 289 PRO CG C N N 290 PRO CD C N N 291 PRO OXT O N N 292 PRO H H N N 293 PRO HA H N N 294 PRO HB2 H N N 295 PRO HB3 H N N 296 PRO HG2 H N N 297 PRO HG3 H N N 298 PRO HD2 H N N 299 PRO HD3 H N N 300 PRO HXT H N N 301 SER N N N N 302 SER CA C N S 303 SER C C N N 304 SER O O N N 305 SER CB C N N 306 SER OG O N N 307 SER OXT O N N 308 SER H H N N 309 SER H2 H N N 310 SER HA H N N 311 SER HB2 H N N 312 SER HB3 H N N 313 SER HG H N N 314 SER HXT H N N 315 THR N N N N 316 THR CA C N S 317 THR C C N N 318 THR O O N N 319 THR CB C N R 320 THR OG1 O N N 321 THR CG2 C N N 322 THR OXT O N N 323 THR H H N N 324 THR H2 H N N 325 THR HA H N N 326 THR HB H N N 327 THR HG1 H N N 328 THR HG21 H N N 329 THR HG22 H N N 330 THR HG23 H N N 331 THR HXT H N N 332 TRP N N N N 333 TRP CA C N S 334 TRP C C N N 335 TRP O O N N 336 TRP CB C N N 337 TRP CG C Y N 338 TRP CD1 C Y N 339 TRP CD2 C Y N 340 TRP NE1 N Y N 341 TRP CE2 C Y N 342 TRP CE3 C Y N 343 TRP CZ2 C Y N 344 TRP CZ3 C Y N 345 TRP CH2 C Y N 346 TRP OXT O N N 347 TRP H H N N 348 TRP H2 H N N 349 TRP HA H N N 350 TRP HB2 H N N 351 TRP HB3 H N N 352 TRP HD1 H N N 353 TRP HE1 H N N 354 TRP HE3 H N N 355 TRP HZ2 H N N 356 TRP HZ3 H N N 357 TRP HH2 H N N 358 TRP HXT H N N 359 TYD PA P N S 360 TYD O1A O N N 361 TYD O2A O N N 362 TYD O3A O N N 363 TYD PB P N N 364 TYD O1B O N N 365 TYD O2B O N N 366 TYD O3B O N N 367 TYD "O5'" O N N 368 TYD "C5'" C N N 369 TYD "C4'" C N R 370 TYD "O4'" O N N 371 TYD "C3'" C N S 372 TYD "O3'" O N N 373 TYD "C2'" C N N 374 TYD "C1'" C N R 375 TYD N1 N Y N 376 TYD C2 C Y N 377 TYD O2 O N N 378 TYD N3 N Y N 379 TYD C4 C Y N 380 TYD O4 O N N 381 TYD C5 C Y N 382 TYD C5M C N N 383 TYD C6 C Y N 384 TYD HOA2 H N N 385 TYD HOB2 H N N 386 TYD HOB3 H N N 387 TYD "H5'1" H N N 388 TYD "H5'2" H N N 389 TYD "H4'" H N N 390 TYD "H3'" H N N 391 TYD "HO3'" H N N 392 TYD "H2'1" H N N 393 TYD "H2'2" H N N 394 TYD "H1'" H N N 395 TYD HN3 H N N 396 TYD H51 H N N 397 TYD H52 H N N 398 TYD H53 H N N 399 TYD H6 H N N 400 TYR N N N N 401 TYR CA C N S 402 TYR C C N N 403 TYR O O N N 404 TYR CB C N N 405 TYR CG C Y N 406 TYR CD1 C Y N 407 TYR CD2 C Y N 408 TYR CE1 C Y N 409 TYR CE2 C Y N 410 TYR CZ C Y N 411 TYR OH O N N 412 TYR OXT O N N 413 TYR H H N N 414 TYR H2 H N N 415 TYR HA H N N 416 TYR HB2 H N N 417 TYR HB3 H N N 418 TYR HD1 H N N 419 TYR HD2 H N N 420 TYR HE1 H N N 421 TYR HE2 H N N 422 TYR HH H N N 423 TYR HXT H N N 424 VAL N N N N 425 VAL CA C N S 426 VAL C C N N 427 VAL O O N N 428 VAL CB C N N 429 VAL CG1 C N N 430 VAL CG2 C N N 431 VAL OXT O N N 432 VAL H H N N 433 VAL H2 H N N 434 VAL HA H N N 435 VAL HB H N N 436 VAL HG11 H N N 437 VAL HG12 H N N 438 VAL HG13 H N N 439 VAL HG21 H N N 440 VAL HG22 H N N 441 VAL HG23 H N N 442 VAL HXT H N N 443 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 POP P1 O1 doub N N 260 POP P1 O2 sing N N 261 POP P1 O3 sing N N 262 POP P1 O sing N N 263 POP O2 HO2 sing N N 264 POP O P2 sing N N 265 POP P2 O4 doub N N 266 POP P2 O5 sing N N 267 POP P2 O6 sing N N 268 POP O5 HO5 sing N N 269 PRO N CA sing N N 270 PRO N CD sing N N 271 PRO N H sing N N 272 PRO CA C sing N N 273 PRO CA CB sing N N 274 PRO CA HA sing N N 275 PRO C O doub N N 276 PRO C OXT sing N N 277 PRO CB CG sing N N 278 PRO CB HB2 sing N N 279 PRO CB HB3 sing N N 280 PRO CG CD sing N N 281 PRO CG HG2 sing N N 282 PRO CG HG3 sing N N 283 PRO CD HD2 sing N N 284 PRO CD HD3 sing N N 285 PRO OXT HXT sing N N 286 SER N CA sing N N 287 SER N H sing N N 288 SER N H2 sing N N 289 SER CA C sing N N 290 SER CA CB sing N N 291 SER CA HA sing N N 292 SER C O doub N N 293 SER C OXT sing N N 294 SER CB OG sing N N 295 SER CB HB2 sing N N 296 SER CB HB3 sing N N 297 SER OG HG sing N N 298 SER OXT HXT sing N N 299 THR N CA sing N N 300 THR N H sing N N 301 THR N H2 sing N N 302 THR CA C sing N N 303 THR CA CB sing N N 304 THR CA HA sing N N 305 THR C O doub N N 306 THR C OXT sing N N 307 THR CB OG1 sing N N 308 THR CB CG2 sing N N 309 THR CB HB sing N N 310 THR OG1 HG1 sing N N 311 THR CG2 HG21 sing N N 312 THR CG2 HG22 sing N N 313 THR CG2 HG23 sing N N 314 THR OXT HXT sing N N 315 TRP N CA sing N N 316 TRP N H sing N N 317 TRP N H2 sing N N 318 TRP CA C sing N N 319 TRP CA CB sing N N 320 TRP CA HA sing N N 321 TRP C O doub N N 322 TRP C OXT sing N N 323 TRP CB CG sing N N 324 TRP CB HB2 sing N N 325 TRP CB HB3 sing N N 326 TRP CG CD1 doub Y N 327 TRP CG CD2 sing Y N 328 TRP CD1 NE1 sing Y N 329 TRP CD1 HD1 sing N N 330 TRP CD2 CE2 doub Y N 331 TRP CD2 CE3 sing Y N 332 TRP NE1 CE2 sing Y N 333 TRP NE1 HE1 sing N N 334 TRP CE2 CZ2 sing Y N 335 TRP CE3 CZ3 doub Y N 336 TRP CE3 HE3 sing N N 337 TRP CZ2 CH2 doub Y N 338 TRP CZ2 HZ2 sing N N 339 TRP CZ3 CH2 sing Y N 340 TRP CZ3 HZ3 sing N N 341 TRP CH2 HH2 sing N N 342 TRP OXT HXT sing N N 343 TYD PA O1A doub N N 344 TYD PA O2A sing N N 345 TYD PA O3A sing N N 346 TYD PA "O5'" sing N N 347 TYD O2A HOA2 sing N N 348 TYD O3A PB sing N N 349 TYD PB O1B doub N N 350 TYD PB O2B sing N N 351 TYD PB O3B sing N N 352 TYD O2B HOB2 sing N N 353 TYD O3B HOB3 sing N N 354 TYD "O5'" "C5'" sing N N 355 TYD "C5'" "C4'" sing N N 356 TYD "C5'" "H5'1" sing N N 357 TYD "C5'" "H5'2" sing N N 358 TYD "C4'" "O4'" sing N N 359 TYD "C4'" "C3'" sing N N 360 TYD "C4'" "H4'" sing N N 361 TYD "O4'" "C1'" sing N N 362 TYD "C3'" "O3'" sing N N 363 TYD "C3'" "C2'" sing N N 364 TYD "C3'" "H3'" sing N N 365 TYD "O3'" "HO3'" sing N N 366 TYD "C2'" "C1'" sing N N 367 TYD "C2'" "H2'1" sing N N 368 TYD "C2'" "H2'2" sing N N 369 TYD "C1'" N1 sing N N 370 TYD "C1'" "H1'" sing N N 371 TYD N1 C2 sing Y N 372 TYD N1 C6 sing Y N 373 TYD C2 O2 doub N N 374 TYD C2 N3 sing Y N 375 TYD N3 C4 sing Y N 376 TYD N3 HN3 sing N N 377 TYD C4 O4 doub N N 378 TYD C4 C5 sing Y N 379 TYD C5 C5M sing N N 380 TYD C5 C6 doub Y N 381 TYD C5M H51 sing N N 382 TYD C5M H52 sing N N 383 TYD C5M H53 sing N N 384 TYD C6 H6 sing N N 385 TYR N CA sing N N 386 TYR N H sing N N 387 TYR N H2 sing N N 388 TYR CA C sing N N 389 TYR CA CB sing N N 390 TYR CA HA sing N N 391 TYR C O doub N N 392 TYR C OXT sing N N 393 TYR CB CG sing N N 394 TYR CB HB2 sing N N 395 TYR CB HB3 sing N N 396 TYR CG CD1 doub Y N 397 TYR CG CD2 sing Y N 398 TYR CD1 CE1 sing Y N 399 TYR CD1 HD1 sing N N 400 TYR CD2 CE2 doub Y N 401 TYR CD2 HD2 sing N N 402 TYR CE1 CZ doub Y N 403 TYR CE1 HE1 sing N N 404 TYR CE2 CZ sing Y N 405 TYR CE2 HE2 sing N N 406 TYR CZ OH sing N N 407 TYR OH HH sing N N 408 TYR OXT HXT sing N N 409 VAL N CA sing N N 410 VAL N H sing N N 411 VAL N H2 sing N N 412 VAL CA C sing N N 413 VAL CA CB sing N N 414 VAL CA HA sing N N 415 VAL C O doub N N 416 VAL C OXT sing N N 417 VAL CB CG1 sing N N 418 VAL CB CG2 sing N N 419 VAL CB HB sing N N 420 VAL CG1 HG11 sing N N 421 VAL CG1 HG12 sing N N 422 VAL CG1 HG13 sing N N 423 VAL CG2 HG21 sing N N 424 VAL CG2 HG22 sing N N 425 VAL CG2 HG23 sing N N 426 VAL OXT HXT sing N N 427 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "THYMIDINE-5'-DIPHOSPHATE" TYD 3 'MAGNESIUM ION' MG 4 'PYROPHOSPHATE 2-' POP 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1E2G _pdbx_initial_refinement_model.details 'PDB ENTRY 1E2G' #