data_2VAZ # _entry.id 2VAZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VAZ pdb_00002vaz 10.2210/pdb2vaz/pdb PDBE EBI-33682 ? ? WWPDB D_1290033682 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2012-11-14 3 'Structure model' 1 2 2017-08-02 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_imaging 2 3 'Structure model' em_software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' em_3d_fitting_list 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_imaging.nominal_defocus_max' 2 3 'Structure model' '_em_imaging.nominal_defocus_min' 3 3 'Structure model' '_em_software.fitting_id' 4 3 'Structure model' '_em_software.image_processing_id' 5 3 'Structure model' '_em_software.name' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_em_3d_fitting_list.accession_code' 9 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 10 4 'Structure model' '_em_3d_fitting_list.source_name' 11 4 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VAZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-09-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-1391 'associated EM volume' 'STRUCTURED MRNAS REGULATE TRANSLATION INITIATION BY BINDING TO A DEDICATED SITE ON THE RIBOSOME.' PDB 1P6G unspecified ;REAL SPACE REFINED COORDINATES OF THE 30S SUBUNIT FITTEDINTO THE LOW RESOLUTION CRYO- EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME ; PDB 1P87 unspecified ;REAL SPACE REFINED COORDINATES OF THE 30S SUBUNIT FITTEDINTO THE LOW RESOLUTION CRYO- EM MAP OF THE INITIATION-LIKESTATE OF E. COLI 70S RIBOSOME ; PDB 2AVY unspecified ;CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROMESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTALSTRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED INREMARK 400. ; PDB 2AW7 unspecified ;CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROMESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRECRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND ISDESCRIBED IN REMARK 400. ; # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Marzi, S.' 1 'Myasnikov, A.G.' 2 'Serganov, A.' 3 'Ehresmann, C.' 4 'Romby, P.' 5 'Yusupov, M.' 6 'Klaholz, B.P.' 7 # _citation.id primary _citation.title 'Structured Mrnas Regulate Translation Initiation by Binding to the Platform of the Ribosome.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 130 _citation.page_first 1019 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17889647 _citation.pdbx_database_id_DOI 10.1016/J.CELL.2007.07.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Marzi, S.' 1 ? primary 'Myasnikov, A.G.' 2 ? primary 'Serganov, A.' 3 ? primary 'Ehresmann, C.' 4 ? primary 'Romby, P.' 5 ? primary 'Yusupov, M.' 6 ? primary 'Klaholz, B.P.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RPSO MRNA OPERATOR' 59427.113 1 ? ? 'HAIRPIN LOOP DOMAIN I AND PSEUDOKNOT' ? 2 polymer man '30S RIBOSOMAL PROTEIN S15' 10290.816 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'REPRESSOR S15' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no ;GGGCGAAUUCGAGCUCGGUACCCAACGUCGCGUAAAUUGUUUAACACUUUGCGUAACGUACACUGGGAUCGCUGAAUUAG AGAUCGGCGUCCUUUCAUUCUAUAUACUAAGGAGGUUAAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUG AGUUUGGUCGACCUGCAGGCAUGCA ; ;GGGCGAAUUCGAGCUCGGUACCCAACGUCGCGUAAAUUGUUUAACACUUUGCGUAACGUACACUGGGAUCGCUGAAUUAG AGAUCGGCGUCCUUUCAUUCUAUAUACUAAGGAGGUUAAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUG AGUUUGGUCGACCUGCAGGCAUGCA ; A ? 2 'polypeptide(L)' no no ;MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQ LIERLGLRR ; ;MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQ LIERLGLRR ; F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 G n 1 6 A n 1 7 A n 1 8 U n 1 9 U n 1 10 C n 1 11 G n 1 12 A n 1 13 G n 1 14 C n 1 15 U n 1 16 C n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 C n 1 22 C n 1 23 C n 1 24 A n 1 25 A n 1 26 C n 1 27 G n 1 28 U n 1 29 C n 1 30 G n 1 31 C n 1 32 G n 1 33 U n 1 34 A n 1 35 A n 1 36 A n 1 37 U n 1 38 U n 1 39 G n 1 40 U n 1 41 U n 1 42 U n 1 43 A n 1 44 A n 1 45 C n 1 46 A n 1 47 C n 1 48 U n 1 49 U n 1 50 U n 1 51 G n 1 52 C n 1 53 G n 1 54 U n 1 55 A n 1 56 A n 1 57 C n 1 58 G n 1 59 U n 1 60 A n 1 61 C n 1 62 A n 1 63 C n 1 64 U n 1 65 G n 1 66 G n 1 67 G n 1 68 A n 1 69 U n 1 70 C n 1 71 G n 1 72 C n 1 73 U n 1 74 G n 1 75 A n 1 76 A n 1 77 U n 1 78 U n 1 79 A n 1 80 G n 1 81 A n 1 82 G n 1 83 A n 1 84 U n 1 85 C n 1 86 G n 1 87 G n 1 88 C n 1 89 G n 1 90 U n 1 91 C n 1 92 C n 1 93 U n 1 94 U n 1 95 U n 1 96 C n 1 97 A n 1 98 U n 1 99 U n 1 100 C n 1 101 U n 1 102 A n 1 103 U n 1 104 A n 1 105 U n 1 106 A n 1 107 C n 1 108 U n 1 109 A n 1 110 A n 1 111 G n 1 112 G n 1 113 A n 1 114 G n 1 115 G n 1 116 U n 1 117 U n 1 118 A n 1 119 A n 1 120 A n 1 121 A n 1 122 U n 1 123 G n 1 124 U n 1 125 C n 1 126 U n 1 127 C n 1 128 U n 1 129 A n 1 130 A n 1 131 G n 1 132 U n 1 133 A n 1 134 C n 1 135 U n 1 136 G n 1 137 A n 1 138 A n 1 139 G n 1 140 C n 1 141 A n 1 142 A n 1 143 C n 1 144 A n 1 145 G n 1 146 C n 1 147 U n 1 148 A n 1 149 A n 1 150 A n 1 151 A n 1 152 U n 1 153 C n 1 154 G n 1 155 U n 1 156 U n 1 157 U n 1 158 C n 1 159 U n 1 160 G n 1 161 A n 1 162 G n 1 163 U n 1 164 U n 1 165 U n 1 166 G n 1 167 G n 1 168 U n 1 169 C n 1 170 G n 1 171 A n 1 172 C n 1 173 C n 1 174 U n 1 175 G n 1 176 C n 1 177 A n 1 178 G n 1 179 G n 1 180 C n 1 181 A n 1 182 U n 1 183 G n 1 184 C n 1 185 A n 2 1 MET n 2 2 SER n 2 3 LEU n 2 4 SER n 2 5 THR n 2 6 GLU n 2 7 ALA n 2 8 THR n 2 9 ALA n 2 10 LYS n 2 11 ILE n 2 12 VAL n 2 13 SER n 2 14 GLU n 2 15 PHE n 2 16 GLY n 2 17 ARG n 2 18 ASP n 2 19 ALA n 2 20 ASN n 2 21 ASP n 2 22 THR n 2 23 GLY n 2 24 SER n 2 25 THR n 2 26 GLU n 2 27 VAL n 2 28 GLN n 2 29 VAL n 2 30 ALA n 2 31 LEU n 2 32 LEU n 2 33 THR n 2 34 ALA n 2 35 GLN n 2 36 ILE n 2 37 ASN n 2 38 HIS n 2 39 LEU n 2 40 GLN n 2 41 GLY n 2 42 HIS n 2 43 PHE n 2 44 ALA n 2 45 GLU n 2 46 HIS n 2 47 LYS n 2 48 LYS n 2 49 ASP n 2 50 HIS n 2 51 HIS n 2 52 SER n 2 53 ARG n 2 54 ARG n 2 55 GLY n 2 56 LEU n 2 57 LEU n 2 58 ARG n 2 59 MET n 2 60 VAL n 2 61 SER n 2 62 GLN n 2 63 ARG n 2 64 ARG n 2 65 LYS n 2 66 LEU n 2 67 LEU n 2 68 ASP n 2 69 TYR n 2 70 LEU n 2 71 LYS n 2 72 ARG n 2 73 LYS n 2 74 ASP n 2 75 VAL n 2 76 ALA n 2 77 ARG n 2 78 TYR n 2 79 THR n 2 80 GLN n 2 81 LEU n 2 82 ILE n 2 83 GLU n 2 84 ARG n 2 85 LEU n 2 86 GLY n 2 87 LEU n 2 88 ARG n 2 89 ARG n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'ESCHERICHIA COLI' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -15 ? ? ? A . n A 1 2 G 2 -14 ? ? ? A . n A 1 3 G 3 -13 ? ? ? A . n A 1 4 C 4 -12 ? ? ? A . n A 1 5 G 5 -11 ? ? ? A . n A 1 6 A 6 -10 ? ? ? A . n A 1 7 A 7 -9 ? ? ? A . n A 1 8 U 8 -8 ? ? ? A . n A 1 9 U 9 -7 ? ? ? A . n A 1 10 C 10 -6 ? ? ? A . n A 1 11 G 11 -5 ? ? ? A . n A 1 12 A 12 -4 ? ? ? A . n A 1 13 G 13 -3 ? ? ? A . n A 1 14 C 14 -2 ? ? ? A . n A 1 15 U 15 -1 ? ? ? A . n A 1 16 C 16 0 ? ? ? A . n A 1 17 G 17 1 ? ? ? A . n A 1 18 G 18 2 ? ? ? A . n A 1 19 U 19 3 ? ? ? A . n A 1 20 A 20 4 ? ? ? A . n A 1 21 C 21 5 ? ? ? A . n A 1 22 C 22 6 ? ? ? A . n A 1 23 C 23 7 ? ? ? A . n A 1 24 A 24 8 ? ? ? A . n A 1 25 A 25 9 9 A A A . n A 1 26 C 26 10 10 C C A . n A 1 27 G 27 11 11 G G A . n A 1 28 U 28 12 12 U U A . n A 1 29 C 29 13 13 C C A . n A 1 30 G 30 14 14 G G A . n A 1 31 C 31 15 15 C C A . n A 1 32 G 32 16 16 G G A . n A 1 33 U 33 17 17 U U A . n A 1 34 A 34 18 18 A A A . n A 1 35 A 35 19 19 A A A . n A 1 36 A 36 20 20 A A A . n A 1 37 U 37 21 21 U U A . n A 1 38 U 38 22 22 U U A . n A 1 39 G 39 23 23 G G A . n A 1 40 U 40 24 24 U U A . n A 1 41 U 41 25 25 U U A . n A 1 42 U 42 26 26 U U A . n A 1 43 A 43 27 27 A A A . n A 1 44 A 44 28 28 A A A . n A 1 45 C 45 29 29 C C A . n A 1 46 A 46 30 30 A A A . n A 1 47 C 47 31 31 C C A . n A 1 48 U 48 32 32 U U A . n A 1 49 U 49 33 33 U U A . n A 1 50 U 50 34 34 U U A . n A 1 51 G 51 35 35 G G A . n A 1 52 C 52 36 36 C C A . n A 1 53 G 53 37 37 G G A . n A 1 54 U 54 38 38 U U A . n A 1 55 A 55 39 39 A A A . n A 1 56 A 56 40 40 A A A . n A 1 57 C 57 41 41 C C A . n A 1 58 G 58 42 42 G G A . n A 1 59 U 59 43 43 U U A . n A 1 60 A 60 44 44 A A A . n A 1 61 C 61 45 45 C C A . n A 1 62 A 62 46 46 A A A . n A 1 63 C 63 47 47 C C A . n A 1 64 U 64 48 48 U U A . n A 1 65 G 65 49 49 G G A . n A 1 66 G 66 50 50 G G A . n A 1 67 G 67 51 51 G G A . n A 1 68 A 68 52 52 A A A . n A 1 69 U 69 53 53 U U A . n A 1 70 C 70 54 54 C C A . n A 1 71 G 71 55 55 G G A . n A 1 72 C 72 56 56 C C A . n A 1 73 U 73 57 57 U U A . n A 1 74 G 74 58 58 G G A . n A 1 75 A 75 59 59 A A A . n A 1 76 A 76 60 60 A A A . n A 1 77 U 77 61 61 U U A . n A 1 78 U 78 62 62 U U A . n A 1 79 A 79 63 63 A A A . n A 1 80 G 80 64 64 G G A . n A 1 81 A 81 65 65 A A A . n A 1 82 G 82 66 66 G G A . n A 1 83 A 83 67 67 A A A . n A 1 84 U 84 68 68 U U A . n A 1 85 C 85 69 69 C C A . n A 1 86 G 86 70 70 G G A . n A 1 87 G 87 71 71 G G A . n A 1 88 C 88 72 72 C C A . n A 1 89 G 89 73 73 G G A . n A 1 90 U 90 74 74 U U A . n A 1 91 C 91 75 75 C C A . n A 1 92 C 92 76 ? ? ? A . n A 1 93 U 93 77 ? ? ? A . n A 1 94 U 94 78 ? ? ? A . n A 1 95 U 95 79 ? ? ? A . n A 1 96 C 96 80 ? ? ? A . n A 1 97 A 97 81 ? ? ? A . n A 1 98 U 98 82 ? ? ? A . n A 1 99 U 99 83 ? ? ? A . n A 1 100 C 100 84 ? ? ? A . n A 1 101 U 101 85 ? ? ? A . n A 1 102 A 102 86 ? ? ? A . n A 1 103 U 103 87 ? ? ? A . n A 1 104 A 104 88 ? ? ? A . n A 1 105 U 105 89 ? ? ? A . n A 1 106 A 106 90 ? ? ? A . n A 1 107 C 107 91 ? ? ? A . n A 1 108 U 108 92 92 U U A . n A 1 109 A 109 93 93 A A A . n A 1 110 A 110 94 94 A A A . n A 1 111 G 111 95 95 G G A . n A 1 112 G 112 96 96 G G A . n A 1 113 A 113 97 97 A A A . n A 1 114 G 114 98 98 G G A . n A 1 115 G 115 99 99 G G A . n A 1 116 U 116 100 100 U U A . n A 1 117 U 117 101 ? ? ? A . n A 1 118 A 118 102 ? ? ? A . n A 1 119 A 119 103 ? ? ? A . n A 1 120 A 120 104 ? ? ? A . n A 1 121 A 121 105 ? ? ? A . n A 1 122 U 122 106 ? ? ? A . n A 1 123 G 123 107 ? ? ? A . n A 1 124 U 124 108 ? ? ? A . n A 1 125 C 125 109 109 C C A . n A 1 126 U 126 110 110 U U A . n A 1 127 C 127 111 111 C C A . n A 1 128 U 128 112 112 U U A . n A 1 129 A 129 113 113 A A A . n A 1 130 A 130 114 114 A A A . n A 1 131 G 131 115 ? ? ? A . n A 1 132 U 132 116 ? ? ? A . n A 1 133 A 133 117 ? ? ? A . n A 1 134 C 134 118 ? ? ? A . n A 1 135 U 135 119 ? ? ? A . n A 1 136 G 136 120 ? ? ? A . n A 1 137 A 137 121 ? ? ? A . n A 1 138 A 138 122 ? ? ? A . n A 1 139 G 139 123 ? ? ? A . n A 1 140 C 140 124 ? ? ? A . n A 1 141 A 141 125 ? ? ? A . n A 1 142 A 142 126 ? ? ? A . n A 1 143 C 143 127 ? ? ? A . n A 1 144 A 144 128 ? ? ? A . n A 1 145 G 145 129 ? ? ? A . n A 1 146 C 146 130 ? ? ? A . n A 1 147 U 147 131 ? ? ? A . n A 1 148 A 148 132 ? ? ? A . n A 1 149 A 149 133 ? ? ? A . n A 1 150 A 150 134 ? ? ? A . n A 1 151 A 151 135 ? ? ? A . n A 1 152 U 152 136 ? ? ? A . n A 1 153 C 153 137 ? ? ? A . n A 1 154 G 154 138 ? ? ? A . n A 1 155 U 155 139 ? ? ? A . n A 1 156 U 156 140 ? ? ? A . n A 1 157 U 157 141 ? ? ? A . n A 1 158 C 158 142 ? ? ? A . n A 1 159 U 159 143 ? ? ? A . n A 1 160 G 160 144 ? ? ? A . n A 1 161 A 161 145 ? ? ? A . n A 1 162 G 162 146 ? ? ? A . n A 1 163 U 163 147 ? ? ? A . n A 1 164 U 164 148 ? ? ? A . n A 1 165 U 165 149 ? ? ? A . n A 1 166 G 166 150 ? ? ? A . n A 1 167 G 167 151 ? ? ? A . n A 1 168 U 168 152 ? ? ? A . n A 1 169 C 169 153 ? ? ? A . n A 1 170 G 170 154 ? ? ? A . n A 1 171 A 171 155 ? ? ? A . n A 1 172 C 172 156 ? ? ? A . n A 1 173 C 173 157 ? ? ? A . n A 1 174 U 174 158 ? ? ? A . n A 1 175 G 175 159 ? ? ? A . n A 1 176 C 176 160 ? ? ? A . n A 1 177 A 177 161 ? ? ? A . n A 1 178 G 178 162 ? ? ? A . n A 1 179 G 179 163 ? ? ? A . n A 1 180 C 180 164 ? ? ? A . n A 1 181 A 181 165 ? ? ? A . n A 1 182 U 182 166 ? ? ? A . n A 1 183 G 183 167 ? ? ? A . n A 1 184 C 184 168 ? ? ? A . n A 1 185 A 185 169 ? ? ? A . n B 2 1 MET 1 100 ? ? ? F . n B 2 2 SER 2 101 101 SER SER F . n B 2 3 LEU 3 102 102 LEU LEU F . n B 2 4 SER 4 103 103 SER SER F . n B 2 5 THR 5 104 104 THR THR F . n B 2 6 GLU 6 105 105 GLU GLU F . n B 2 7 ALA 7 106 106 ALA ALA F . n B 2 8 THR 8 107 107 THR THR F . n B 2 9 ALA 9 108 108 ALA ALA F . n B 2 10 LYS 10 109 109 LYS LYS F . n B 2 11 ILE 11 110 110 ILE ILE F . n B 2 12 VAL 12 111 111 VAL VAL F . n B 2 13 SER 13 112 112 SER SER F . n B 2 14 GLU 14 113 113 GLU GLU F . n B 2 15 PHE 15 114 114 PHE PHE F . n B 2 16 GLY 16 115 115 GLY GLY F . n B 2 17 ARG 17 116 116 ARG ARG F . n B 2 18 ASP 18 117 117 ASP ASP F . n B 2 19 ALA 19 118 118 ALA ALA F . n B 2 20 ASN 20 119 119 ASN ASN F . n B 2 21 ASP 21 120 120 ASP ASP F . n B 2 22 THR 22 121 121 THR THR F . n B 2 23 GLY 23 122 122 GLY GLY F . n B 2 24 SER 24 123 123 SER SER F . n B 2 25 THR 25 124 124 THR THR F . n B 2 26 GLU 26 125 125 GLU GLU F . n B 2 27 VAL 27 126 126 VAL VAL F . n B 2 28 GLN 28 127 127 GLN GLN F . n B 2 29 VAL 29 128 128 VAL VAL F . n B 2 30 ALA 30 129 129 ALA ALA F . n B 2 31 LEU 31 130 130 LEU LEU F . n B 2 32 LEU 32 131 131 LEU LEU F . n B 2 33 THR 33 132 132 THR THR F . n B 2 34 ALA 34 133 133 ALA ALA F . n B 2 35 GLN 35 134 134 GLN GLN F . n B 2 36 ILE 36 135 135 ILE ILE F . n B 2 37 ASN 37 136 136 ASN ASN F . n B 2 38 HIS 38 137 137 HIS HIS F . n B 2 39 LEU 39 138 138 LEU LEU F . n B 2 40 GLN 40 139 139 GLN GLN F . n B 2 41 GLY 41 140 140 GLY GLY F . n B 2 42 HIS 42 141 141 HIS HIS F . n B 2 43 PHE 43 142 142 PHE PHE F . n B 2 44 ALA 44 143 143 ALA ALA F . n B 2 45 GLU 45 144 144 GLU GLU F . n B 2 46 HIS 46 145 145 HIS HIS F . n B 2 47 LYS 47 146 146 LYS LYS F . n B 2 48 LYS 48 147 147 LYS LYS F . n B 2 49 ASP 49 148 148 ASP ASP F . n B 2 50 HIS 50 149 149 HIS HIS F . n B 2 51 HIS 51 150 150 HIS HIS F . n B 2 52 SER 52 151 151 SER SER F . n B 2 53 ARG 53 152 152 ARG ARG F . n B 2 54 ARG 54 153 153 ARG ARG F . n B 2 55 GLY 55 154 154 GLY GLY F . n B 2 56 LEU 56 155 155 LEU LEU F . n B 2 57 LEU 57 156 156 LEU LEU F . n B 2 58 ARG 58 157 157 ARG ARG F . n B 2 59 MET 59 158 158 MET MET F . n B 2 60 VAL 60 159 159 VAL VAL F . n B 2 61 SER 61 160 160 SER SER F . n B 2 62 GLN 62 161 161 GLN GLN F . n B 2 63 ARG 63 162 162 ARG ARG F . n B 2 64 ARG 64 163 163 ARG ARG F . n B 2 65 LYS 65 164 164 LYS LYS F . n B 2 66 LEU 66 165 165 LEU LEU F . n B 2 67 LEU 67 166 166 LEU LEU F . n B 2 68 ASP 68 167 167 ASP ASP F . n B 2 69 TYR 69 168 168 TYR TYR F . n B 2 70 LEU 70 169 169 LEU LEU F . n B 2 71 LYS 71 170 170 LYS LYS F . n B 2 72 ARG 72 171 171 ARG ARG F . n B 2 73 LYS 73 172 172 LYS LYS F . n B 2 74 ASP 74 173 173 ASP ASP F . n B 2 75 VAL 75 174 174 VAL VAL F . n B 2 76 ALA 76 175 175 ALA ALA F . n B 2 77 ARG 77 176 176 ARG ARG F . n B 2 78 TYR 78 177 177 TYR TYR F . n B 2 79 THR 79 178 178 THR THR F . n B 2 80 GLN 80 179 179 GLN GLN F . n B 2 81 LEU 81 180 180 LEU LEU F . n B 2 82 ILE 82 181 181 ILE ILE F . n B 2 83 GLU 83 182 182 GLU GLU F . n B 2 84 ARG 84 183 183 ARG ARG F . n B 2 85 LEU 85 184 184 LEU LEU F . n B 2 86 GLY 86 185 185 GLY GLY F . n B 2 87 LEU 87 186 186 LEU LEU F . n B 2 88 ARG 88 187 ? ? ? F . n B 2 89 ARG 89 188 ? ? ? F . n # _cell.entry_id 2VAZ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VAZ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2VAZ _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 2VAZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 10.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 86 _refine_hist.pdbx_number_atoms_nucleic_acid 82 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 168 _refine_hist.d_res_high 10.00 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 2VAZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2VAZ _struct.title 'Model of the S15-mRNA complex fitted into the cryo-EM map of the 70S entrapment complex.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'P ATOMS ONLY, CHAIN A ; CA ATOMS ONLY, CHAIN F' # _struct_keywords.entry_id 2VAZ _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text ;TRANSLATION, PLATFORM-BINDING CENTER, GENE EXPRESSION REGULATION, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, PROTEIN SYNTHESIS, TRANSLATION INITIATION, RIBOSOME, RIBOSWITCH, RNA-BINDING, RRNA-BINDING, RNA PSEUDOKNOT, MRNA STRUCTURE, REPRESSOR PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VAZ 1 ? ? 2VAZ ? 2 PDB 2VAZ 2 ? ? 2VAZ ? 3 UNP RS15_ECOLI 2 ? ? P0ADZ4 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VAZ A 1 ? 185 ? 2VAZ -15 ? 169 ? -15 169 2 2 2VAZ F 1 ? 1 ? 2VAZ 100 ? 100 ? 100 100 3 3 2VAZ F 2 ? 89 ? P0ADZ4 1 ? 88 ? 101 188 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 2VAZ _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'METHOD--MANUAL REFINEMENT PROTOCOL--X-RAY AND HOMOLOGY MODELS' _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 2AW7 ? ? 1 ? ? ? PDB 'experimental model' 2AW7 1 2 2AWB ? ? 2 ? ? ? PDB 'experimental model' 2AWB # _em_3d_reconstruction.entry_id 2VAZ _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 31415 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'MANUAL FITTING' _em_3d_reconstruction.nominal_pixel_size 3 _em_3d_reconstruction.actual_pixel_size 3 _em_3d_reconstruction.resolution 10 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE RECORDS ARE MEANINGLESS. THE MRNA HAS BEEN MODELED USING MANIP (MASSIRE AND WESTHOF). ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '20 MM TRIS-HCL PH 7.5, 60 MM KCL, 1MM DTT, 7.5 MM MGCL2' _em_buffer.pH 7.5 _em_buffer.details '20 MM TRIS-HCL PH 7.5, 60 MM KCL, 1MM DTT, 7.5 MM MGCL2' # _em_entity_assembly.id 1 _em_entity_assembly.name '70S PRE-INITIATION COMPLEX ENTRAPPED BY S15- RPSOMRNA' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 2VAZ _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 67 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image ? # _em_imaging.entry_id 2VAZ _em_imaging.id 1 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.specimen_id 1 _em_imaging.date 2005-01-05 _em_imaging.temperature 77 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 3500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.0 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 51484 _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.calibrated_defocus_max ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_min ? _em_imaging.cryogen ? _em_imaging.residual_tilt ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 2VAZ _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'BLOT FOR 2 SECONDS BEFORE PLUNGING IN LIQUID ETHANE USING A HOME-MADE CRYO- PLUNGER' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 2VAZ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 2VAZ _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G -15 ? A G 1 2 1 Y 1 A G -14 ? A G 2 3 1 Y 1 A G -13 ? A G 3 4 1 Y 1 A C -12 ? A C 4 5 1 Y 1 A G -11 ? A G 5 6 1 Y 1 A A -10 ? A A 6 7 1 Y 1 A A -9 ? A A 7 8 1 Y 1 A U -8 ? A U 8 9 1 Y 1 A U -7 ? A U 9 10 1 Y 1 A C -6 ? A C 10 11 1 Y 1 A G -5 ? A G 11 12 1 Y 1 A A -4 ? A A 12 13 1 Y 1 A G -3 ? A G 13 14 1 Y 1 A C -2 ? A C 14 15 1 Y 1 A U -1 ? A U 15 16 1 Y 1 A C 0 ? A C 16 17 1 Y 1 A G 1 ? A G 17 18 1 Y 1 A G 2 ? A G 18 19 1 Y 1 A U 3 ? A U 19 20 1 Y 1 A A 4 ? A A 20 21 1 Y 1 A C 5 ? A C 21 22 1 Y 1 A C 6 ? A C 22 23 1 Y 1 A C 7 ? A C 23 24 1 Y 1 A A 8 ? A A 24 25 1 Y 1 A C 76 ? A C 92 26 1 Y 1 A U 77 ? A U 93 27 1 Y 1 A U 78 ? A U 94 28 1 Y 1 A U 79 ? A U 95 29 1 Y 1 A C 80 ? A C 96 30 1 Y 1 A A 81 ? A A 97 31 1 Y 1 A U 82 ? A U 98 32 1 Y 1 A U 83 ? A U 99 33 1 Y 1 A C 84 ? A C 100 34 1 Y 1 A U 85 ? A U 101 35 1 Y 1 A A 86 ? A A 102 36 1 Y 1 A U 87 ? A U 103 37 1 Y 1 A A 88 ? A A 104 38 1 Y 1 A U 89 ? A U 105 39 1 Y 1 A A 90 ? A A 106 40 1 Y 1 A C 91 ? A C 107 41 1 Y 1 A U 101 ? A U 117 42 1 Y 1 A A 102 ? A A 118 43 1 Y 1 A A 103 ? A A 119 44 1 Y 1 A A 104 ? A A 120 45 1 Y 1 A A 105 ? A A 121 46 1 Y 1 A U 106 ? A U 122 47 1 Y 1 A G 107 ? A G 123 48 1 Y 1 A U 108 ? A U 124 49 1 Y 1 A G 115 ? A G 131 50 1 Y 1 A U 116 ? A U 132 51 1 Y 1 A A 117 ? A A 133 52 1 Y 1 A C 118 ? A C 134 53 1 Y 1 A U 119 ? A U 135 54 1 Y 1 A G 120 ? A G 136 55 1 Y 1 A A 121 ? A A 137 56 1 Y 1 A A 122 ? A A 138 57 1 Y 1 A G 123 ? A G 139 58 1 Y 1 A C 124 ? A C 140 59 1 Y 1 A A 125 ? A A 141 60 1 Y 1 A A 126 ? A A 142 61 1 Y 1 A C 127 ? A C 143 62 1 Y 1 A A 128 ? A A 144 63 1 Y 1 A G 129 ? A G 145 64 1 Y 1 A C 130 ? A C 146 65 1 Y 1 A U 131 ? A U 147 66 1 Y 1 A A 132 ? A A 148 67 1 Y 1 A A 133 ? A A 149 68 1 Y 1 A A 134 ? A A 150 69 1 Y 1 A A 135 ? A A 151 70 1 Y 1 A U 136 ? A U 152 71 1 Y 1 A C 137 ? A C 153 72 1 Y 1 A G 138 ? A G 154 73 1 Y 1 A U 139 ? A U 155 74 1 Y 1 A U 140 ? A U 156 75 1 Y 1 A U 141 ? A U 157 76 1 Y 1 A C 142 ? A C 158 77 1 Y 1 A U 143 ? A U 159 78 1 Y 1 A G 144 ? A G 160 79 1 Y 1 A A 145 ? A A 161 80 1 Y 1 A G 146 ? A G 162 81 1 Y 1 A U 147 ? A U 163 82 1 Y 1 A U 148 ? A U 164 83 1 Y 1 A U 149 ? A U 165 84 1 Y 1 A G 150 ? A G 166 85 1 Y 1 A G 151 ? A G 167 86 1 Y 1 A U 152 ? A U 168 87 1 Y 1 A C 153 ? A C 169 88 1 Y 1 A G 154 ? A G 170 89 1 Y 1 A A 155 ? A A 171 90 1 Y 1 A C 156 ? A C 172 91 1 Y 1 A C 157 ? A C 173 92 1 Y 1 A U 158 ? A U 174 93 1 Y 1 A G 159 ? A G 175 94 1 Y 1 A C 160 ? A C 176 95 1 Y 1 A A 161 ? A A 177 96 1 Y 1 A G 162 ? A G 178 97 1 Y 1 A G 163 ? A G 179 98 1 Y 1 A C 164 ? A C 180 99 1 Y 1 A A 165 ? A A 181 100 1 Y 1 A U 166 ? A U 182 101 1 Y 1 A G 167 ? A G 183 102 1 Y 1 A C 168 ? A C 184 103 1 Y 1 A A 169 ? A A 185 104 1 Y 1 F MET 100 ? B MET 1 105 1 Y 1 F ARG 187 ? B ARG 88 106 1 Y 1 F ARG 188 ? B ARG 89 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 SER N N N N 366 SER CA C N S 367 SER C C N N 368 SER O O N N 369 SER CB C N N 370 SER OG O N N 371 SER OXT O N N 372 SER H H N N 373 SER H2 H N N 374 SER HA H N N 375 SER HB2 H N N 376 SER HB3 H N N 377 SER HG H N N 378 SER HXT H N N 379 THR N N N N 380 THR CA C N S 381 THR C C N N 382 THR O O N N 383 THR CB C N R 384 THR OG1 O N N 385 THR CG2 C N N 386 THR OXT O N N 387 THR H H N N 388 THR H2 H N N 389 THR HA H N N 390 THR HB H N N 391 THR HG1 H N N 392 THR HG21 H N N 393 THR HG22 H N N 394 THR HG23 H N N 395 THR HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 U OP3 O N N 421 U P P N N 422 U OP1 O N N 423 U OP2 O N N 424 U "O5'" O N N 425 U "C5'" C N N 426 U "C4'" C N R 427 U "O4'" O N N 428 U "C3'" C N S 429 U "O3'" O N N 430 U "C2'" C N R 431 U "O2'" O N N 432 U "C1'" C N R 433 U N1 N N N 434 U C2 C N N 435 U O2 O N N 436 U N3 N N N 437 U C4 C N N 438 U O4 O N N 439 U C5 C N N 440 U C6 C N N 441 U HOP3 H N N 442 U HOP2 H N N 443 U "H5'" H N N 444 U "H5''" H N N 445 U "H4'" H N N 446 U "H3'" H N N 447 U "HO3'" H N N 448 U "H2'" H N N 449 U "HO2'" H N N 450 U "H1'" H N N 451 U H3 H N N 452 U H5 H N N 453 U H6 H N N 454 VAL N N N N 455 VAL CA C N S 456 VAL C C N N 457 VAL O O N N 458 VAL CB C N N 459 VAL CG1 C N N 460 VAL CG2 C N N 461 VAL OXT O N N 462 VAL H H N N 463 VAL H2 H N N 464 VAL HA H N N 465 VAL HB H N N 466 VAL HG11 H N N 467 VAL HG12 H N N 468 VAL HG13 H N N 469 VAL HG21 H N N 470 VAL HG22 H N N 471 VAL HG23 H N N 472 VAL HXT H N N 473 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 SER N CA sing N N 360 SER N H sing N N 361 SER N H2 sing N N 362 SER CA C sing N N 363 SER CA CB sing N N 364 SER CA HA sing N N 365 SER C O doub N N 366 SER C OXT sing N N 367 SER CB OG sing N N 368 SER CB HB2 sing N N 369 SER CB HB3 sing N N 370 SER OG HG sing N N 371 SER OXT HXT sing N N 372 THR N CA sing N N 373 THR N H sing N N 374 THR N H2 sing N N 375 THR CA C sing N N 376 THR CA CB sing N N 377 THR CA HA sing N N 378 THR C O doub N N 379 THR C OXT sing N N 380 THR CB OG1 sing N N 381 THR CB CG2 sing N N 382 THR CB HB sing N N 383 THR OG1 HG1 sing N N 384 THR CG2 HG21 sing N N 385 THR CG2 HG22 sing N N 386 THR CG2 HG23 sing N N 387 THR OXT HXT sing N N 388 TYR N CA sing N N 389 TYR N H sing N N 390 TYR N H2 sing N N 391 TYR CA C sing N N 392 TYR CA CB sing N N 393 TYR CA HA sing N N 394 TYR C O doub N N 395 TYR C OXT sing N N 396 TYR CB CG sing N N 397 TYR CB HB2 sing N N 398 TYR CB HB3 sing N N 399 TYR CG CD1 doub Y N 400 TYR CG CD2 sing Y N 401 TYR CD1 CE1 sing Y N 402 TYR CD1 HD1 sing N N 403 TYR CD2 CE2 doub Y N 404 TYR CD2 HD2 sing N N 405 TYR CE1 CZ doub Y N 406 TYR CE1 HE1 sing N N 407 TYR CE2 CZ sing Y N 408 TYR CE2 HE2 sing N N 409 TYR CZ OH sing N N 410 TYR OH HH sing N N 411 TYR OXT HXT sing N N 412 U OP3 P sing N N 413 U OP3 HOP3 sing N N 414 U P OP1 doub N N 415 U P OP2 sing N N 416 U P "O5'" sing N N 417 U OP2 HOP2 sing N N 418 U "O5'" "C5'" sing N N 419 U "C5'" "C4'" sing N N 420 U "C5'" "H5'" sing N N 421 U "C5'" "H5''" sing N N 422 U "C4'" "O4'" sing N N 423 U "C4'" "C3'" sing N N 424 U "C4'" "H4'" sing N N 425 U "O4'" "C1'" sing N N 426 U "C3'" "O3'" sing N N 427 U "C3'" "C2'" sing N N 428 U "C3'" "H3'" sing N N 429 U "O3'" "HO3'" sing N N 430 U "C2'" "O2'" sing N N 431 U "C2'" "C1'" sing N N 432 U "C2'" "H2'" sing N N 433 U "O2'" "HO2'" sing N N 434 U "C1'" N1 sing N N 435 U "C1'" "H1'" sing N N 436 U N1 C2 sing N N 437 U N1 C6 sing N N 438 U C2 O2 doub N N 439 U C2 N3 sing N N 440 U N3 C4 sing N N 441 U N3 H3 sing N N 442 U C4 O4 doub N N 443 U C4 C5 sing N N 444 U C5 C6 doub N N 445 U C5 H5 sing N N 446 U C6 H6 sing N N 447 VAL N CA sing N N 448 VAL N H sing N N 449 VAL N H2 sing N N 450 VAL CA C sing N N 451 VAL CA CB sing N N 452 VAL CA HA sing N N 453 VAL C O doub N N 454 VAL C OXT sing N N 455 VAL CB CG1 sing N N 456 VAL CB CG2 sing N N 457 VAL CB HB sing N N 458 VAL CG1 HG11 sing N N 459 VAL CG1 HG12 sing N N 460 VAL CG1 HG13 sing N N 461 VAL CG2 HG21 sing N N 462 VAL CG2 HG22 sing N N 463 VAL CG2 HG23 sing N N 464 VAL OXT HXT sing N N 465 # _em_ctf_correction.id 1 _em_ctf_correction.details 'INDIVIDUAL PARTICLES' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 O ? 'MODEL FITTING' ? ? ? 1 2 PyMOL ? 'MODEL FITTING' ? ? ? 1 3 IMAGIC 5 RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.5 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'P ATOMS ONLY' B 'CA ATOMS ONLY' # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 2AW7 2 'experimental model' PDB 2AWB # _atom_sites.entry_id 2VAZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C P # loop_