data_2VY7 # _entry.id 2VY7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VY7 PDBE EBI-36945 WWPDB D_1290036945 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2JDQ unspecified 'C-TERMINAL DOMAIN OF INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT IN COMPLEX WITH HUMAN IMPORTIN ALPHA5' PDB 2VQZ unspecified 'STRUCTURE OF THE CAP-BINDING DOMAIN OF INFLUENZA VIRUS POLYMERASE SUBUNIT PB2 WITH BOUND M7GTP' PDB 2VY6 unspecified 'TWO DOMAINS FROM THE C-TERMINAL REGION OF INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT' PDB 2VY8 unspecified 'THE 627-DOMAIN FROM INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT WITH GLU-627' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VY7 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-07-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tarendeau, F.' 1 'Crepin, T.' 2 'Guilligay, D.' 3 'Ruigrok, R.' 4 'Cusack, S.' 5 'Hart, D.' 6 # _citation.id primary _citation.title 'Host Determinant Residue Lysine 627 Lies on the Surface of a Discrete, Folded Domain of Influenza Virus Polymerase Pb2 Subunit' _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 4 _citation.page_first 136 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7366 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18769709 _citation.pdbx_database_id_DOI 10.1371/JOURNAL.PPAT.1000136 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tarendeau, F.' 1 primary 'Crepin, T.' 2 primary 'Guilligay, D.' 3 primary 'Ruigrok, R.' 4 primary 'Cusack, S.' 5 primary 'Hart, D.' 6 # _cell.entry_id 2VY7 _cell.length_a 48.390 _cell.length_b 45.020 _cell.length_c 60.000 _cell.angle_alpha 90.00 _cell.angle_beta 105.45 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VY7 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'POLYMERASE BASIC PROTEIN 2' 17955.738 1 ? ? '627- DOMAIN, RESIDUES 538-693' ? 2 water nat water 18.015 174 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA-DIRECTED RNA POLYMERASE SUBUNIT P3, INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEINGPESVLVNTYQWIIRNWETVKIQWSQNPT(MSE)LYNK(MSE)EFEPFQSLVPKAIRGQYSGFVRTLFQQ(MSE)R DVLGTFDTTQIIKLLPFAAAPPKQSR(MSE)QFSSLTVNVRGSG(MSE)RILVRGNSPVFNYNKTTKRLTILGKDAGTLI EDPDESTSGVESAVLRG ; _entity_poly.pdbx_seq_one_letter_code_can ;GEINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQII KLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKRLTILGKDAGTLIEDPDESTSGVESAVLRG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ILE n 1 4 ASN n 1 5 GLY n 1 6 PRO n 1 7 GLU n 1 8 SER n 1 9 VAL n 1 10 LEU n 1 11 VAL n 1 12 ASN n 1 13 THR n 1 14 TYR n 1 15 GLN n 1 16 TRP n 1 17 ILE n 1 18 ILE n 1 19 ARG n 1 20 ASN n 1 21 TRP n 1 22 GLU n 1 23 THR n 1 24 VAL n 1 25 LYS n 1 26 ILE n 1 27 GLN n 1 28 TRP n 1 29 SER n 1 30 GLN n 1 31 ASN n 1 32 PRO n 1 33 THR n 1 34 MSE n 1 35 LEU n 1 36 TYR n 1 37 ASN n 1 38 LYS n 1 39 MSE n 1 40 GLU n 1 41 PHE n 1 42 GLU n 1 43 PRO n 1 44 PHE n 1 45 GLN n 1 46 SER n 1 47 LEU n 1 48 VAL n 1 49 PRO n 1 50 LYS n 1 51 ALA n 1 52 ILE n 1 53 ARG n 1 54 GLY n 1 55 GLN n 1 56 TYR n 1 57 SER n 1 58 GLY n 1 59 PHE n 1 60 VAL n 1 61 ARG n 1 62 THR n 1 63 LEU n 1 64 PHE n 1 65 GLN n 1 66 GLN n 1 67 MSE n 1 68 ARG n 1 69 ASP n 1 70 VAL n 1 71 LEU n 1 72 GLY n 1 73 THR n 1 74 PHE n 1 75 ASP n 1 76 THR n 1 77 THR n 1 78 GLN n 1 79 ILE n 1 80 ILE n 1 81 LYS n 1 82 LEU n 1 83 LEU n 1 84 PRO n 1 85 PHE n 1 86 ALA n 1 87 ALA n 1 88 ALA n 1 89 PRO n 1 90 PRO n 1 91 LYS n 1 92 GLN n 1 93 SER n 1 94 ARG n 1 95 MSE n 1 96 GLN n 1 97 PHE n 1 98 SER n 1 99 SER n 1 100 LEU n 1 101 THR n 1 102 VAL n 1 103 ASN n 1 104 VAL n 1 105 ARG n 1 106 GLY n 1 107 SER n 1 108 GLY n 1 109 MSE n 1 110 ARG n 1 111 ILE n 1 112 LEU n 1 113 VAL n 1 114 ARG n 1 115 GLY n 1 116 ASN n 1 117 SER n 1 118 PRO n 1 119 VAL n 1 120 PHE n 1 121 ASN n 1 122 TYR n 1 123 ASN n 1 124 LYS n 1 125 THR n 1 126 THR n 1 127 LYS n 1 128 ARG n 1 129 LEU n 1 130 THR n 1 131 ILE n 1 132 LEU n 1 133 GLY n 1 134 LYS n 1 135 ASP n 1 136 ALA n 1 137 GLY n 1 138 THR n 1 139 LEU n 1 140 ILE n 1 141 GLU n 1 142 ASP n 1 143 PRO n 1 144 ASP n 1 145 GLU n 1 146 SER n 1 147 THR n 1 148 SER n 1 149 GLY n 1 150 VAL n 1 151 GLU n 1 152 SER n 1 153 ALA n 1 154 VAL n 1 155 LEU n 1 156 ARG n 1 157 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'A/VICTORIA/3/1975(H3N2)' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'INFLUENZA A VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11320 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant 'AI RIL' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VY7 1 ? ? 2VY7 ? 2 UNP PB2_I75A3 1 ? ? P31345 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VY7 A 1 ? 1 ? 2VY7 537 ? 537 ? 537 537 2 2 2VY7 A 2 ? 157 ? P31345 538 ? 693 ? 538 693 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VY7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_percent_sol 33 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;1 MICROLITRE OF 2.4 MG/ML PROTEIN SOLUTION IN 10 MM TRIS-HCL PH 7.0 AND 200 MM NACL WITH 1 MICROLITRE OF 100 MM CITRIC ACID PH 4.0-7.0 AND 1.4-1.6 M AMMONIUM SULFATE SOLUTION ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2007-09-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VY7 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 58.00 _reflns.d_resolution_high 1.53 _reflns.number_obs 36025 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.67 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.53 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 77.3 _reflns_shell.Rmerge_I_obs 0.17 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.30 _reflns_shell.pdbx_redundancy 2.28 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VY7 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17685 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 57.83 _refine.ls_d_res_high 1.53 _refine.ls_percent_reflns_obs 98.6 _refine.ls_R_factor_obs 0.146 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.144 _refine.ls_R_factor_R_free 0.185 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 960 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 7.51 _refine.aniso_B[1][1] 0.01000 _refine.aniso_B[2][2] -0.15000 _refine.aniso_B[3][3] 0.29000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.27000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.082 _refine.pdbx_overall_ESU_R_Free 0.085 _refine.overall_SU_ML 0.048 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.261 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1219 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 1393 _refine_hist.d_res_high 1.53 _refine_hist.d_res_low 57.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1405 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 971 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.573 1.966 ? 1934 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.968 3.000 ? 2399 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.778 5.000 ? 195 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.852 24.754 ? 61 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.920 15.000 ? 264 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.658 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 221 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1599 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 275 'X-RAY DIFFRACTION' ? r_nbd_refined 0.257 0.200 ? 324 'X-RAY DIFFRACTION' ? r_nbd_other 0.193 0.200 ? 1034 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.186 0.200 ? 710 'X-RAY DIFFRACTION' ? r_nbtor_other 0.087 0.200 ? 706 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.195 0.200 ? 115 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.174 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.292 0.200 ? 66 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.334 0.200 ? 30 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.354 1.500 ? 889 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.720 2.000 ? 1435 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.565 3.000 ? 581 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.894 4.500 ? 485 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.53 _refine_ls_shell.d_res_low 1.57 _refine_ls_shell.number_reflns_R_work 1147 _refine_ls_shell.R_factor_R_work 0.1590 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2510 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VY7 _struct.title 'The 627-domain from influenza A virus polymerase PB2 subunit' _struct.pdbx_descriptor 'POLYMERASE BASIC PROTEIN 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VY7 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, MRNA CAPPING, MITOCHONDRION, MRNA PROCESSING, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 4 ? ASN A 20 ? ASN A 540 ASN A 556 1 ? 17 HELX_P HELX_P2 2 ASN A 20 ? ASN A 31 ? ASN A 556 ASN A 567 1 ? 12 HELX_P HELX_P3 3 ASN A 31 ? ASN A 37 ? ASN A 567 ASN A 573 1 ? 7 HELX_P HELX_P4 4 LYS A 38 ? GLU A 40 ? LYS A 574 GLU A 576 5 ? 3 HELX_P HELX_P5 5 PHE A 41 ? VAL A 48 ? PHE A 577 VAL A 584 1 ? 8 HELX_P HELX_P6 6 ILE A 52 ? GLY A 72 ? ILE A 588 GLY A 608 1 ? 21 HELX_P HELX_P7 7 ASP A 75 ? LEU A 83 ? ASP A 611 LEU A 619 1 ? 9 HELX_P HELX_P8 8 PRO A 84 ? ALA A 87 ? PRO A 620 ALA A 623 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 33 C ? ? ? 1_555 A MSE 34 N A ? A THR 569 A MSE 570 1_555 ? ? ? ? ? ? ? 1.319 ? covale2 covale ? ? A THR 33 C ? ? ? 1_555 A MSE 34 N B ? A THR 569 A MSE 570 1_555 ? ? ? ? ? ? ? 1.326 ? covale3 covale ? ? A MSE 34 C A ? ? 1_555 A LEU 35 N ? ? A MSE 570 A LEU 571 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 34 C B ? ? 1_555 A LEU 35 N ? ? A MSE 570 A LEU 571 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A LYS 38 C ? ? ? 1_555 A MSE 39 N C ? A LYS 574 A MSE 575 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A LYS 38 C ? ? ? 1_555 A MSE 39 N A ? A LYS 574 A MSE 575 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale ? ? A LYS 38 C ? ? ? 1_555 A MSE 39 N B ? A LYS 574 A MSE 575 1_555 ? ? ? ? ? ? ? 1.334 ? covale8 covale ? ? A MSE 39 C C ? ? 1_555 A GLU 40 N ? ? A MSE 575 A GLU 576 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A MSE 39 C A ? ? 1_555 A GLU 40 N ? ? A MSE 575 A GLU 576 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? A MSE 39 C B ? ? 1_555 A GLU 40 N ? ? A MSE 575 A GLU 576 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? A GLN 66 C ? ? ? 1_555 A MSE 67 N B ? A GLN 602 A MSE 603 1_555 ? ? ? ? ? ? ? 1.311 ? covale12 covale ? ? A GLN 66 C ? ? ? 1_555 A MSE 67 N A ? A GLN 602 A MSE 603 1_555 ? ? ? ? ? ? ? 1.346 ? covale13 covale ? ? A MSE 67 C B ? ? 1_555 A ARG 68 N ? ? A MSE 603 A ARG 604 1_555 ? ? ? ? ? ? ? 1.328 ? covale14 covale ? ? A MSE 67 C A ? ? 1_555 A ARG 68 N ? ? A MSE 603 A ARG 604 1_555 ? ? ? ? ? ? ? 1.342 ? covale15 covale ? ? A ARG 94 C ? ? ? 1_555 A MSE 95 N ? ? A ARG 630 A MSE 631 1_555 ? ? ? ? ? ? ? 1.330 ? covale16 covale ? ? A MSE 95 C ? ? ? 1_555 A GLN 96 N ? ? A MSE 631 A GLN 632 1_555 ? ? ? ? ? ? ? 1.324 ? covale17 covale ? ? A GLY 108 C ? ? ? 1_555 A MSE 109 N ? ? A GLY 644 A MSE 645 1_555 ? ? ? ? ? ? ? 1.337 ? covale18 covale ? ? A MSE 109 C ? ? ? 1_555 A ARG 110 N ? ? A MSE 645 A ARG 646 1_555 ? ? ? ? ? ? ? 1.322 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 SER A 99 ? VAL A 102 ? SER A 635 VAL A 638 AA 2 MSE A 109 ? LEU A 112 ? MSE A 645 LEU A 648 AB 1 PHE A 120 ? ASN A 123 ? PHE A 656 ASN A 659 AB 2 ARG A 128 ? ILE A 131 ? ARG A 664 ILE A 667 AB 3 LYS A 134 ? THR A 138 ? LYS A 670 THR A 674 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 102 ? N VAL A 638 O MSE A 109 ? O MSE A 645 AB 1 2 N ASN A 123 ? N ASN A 659 O ARG A 128 ? O ARG A 664 AB 2 3 N ILE A 131 ? N ILE A 667 O LYS A 134 ? O LYS A 670 # _database_PDB_matrix.entry_id 2VY7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VY7 _atom_sites.fract_transf_matrix[1][1] 0.020665 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005712 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022212 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017292 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 537 537 GLY GLY A . n A 1 2 GLU 2 538 538 GLU GLU A . n A 1 3 ILE 3 539 539 ILE ILE A . n A 1 4 ASN 4 540 540 ASN ASN A . n A 1 5 GLY 5 541 541 GLY GLY A . n A 1 6 PRO 6 542 542 PRO PRO A . n A 1 7 GLU 7 543 543 GLU GLU A . n A 1 8 SER 8 544 544 SER SER A . n A 1 9 VAL 9 545 545 VAL VAL A . n A 1 10 LEU 10 546 546 LEU LEU A . n A 1 11 VAL 11 547 547 VAL VAL A . n A 1 12 ASN 12 548 548 ASN ASN A . n A 1 13 THR 13 549 549 THR THR A . n A 1 14 TYR 14 550 550 TYR TYR A . n A 1 15 GLN 15 551 551 GLN GLN A . n A 1 16 TRP 16 552 552 TRP TRP A . n A 1 17 ILE 17 553 553 ILE ILE A . n A 1 18 ILE 18 554 554 ILE ILE A . n A 1 19 ARG 19 555 555 ARG ARG A . n A 1 20 ASN 20 556 556 ASN ASN A . n A 1 21 TRP 21 557 557 TRP TRP A . n A 1 22 GLU 22 558 558 GLU GLU A . n A 1 23 THR 23 559 559 THR THR A . n A 1 24 VAL 24 560 560 VAL VAL A . n A 1 25 LYS 25 561 561 LYS LYS A . n A 1 26 ILE 26 562 562 ILE ILE A . n A 1 27 GLN 27 563 563 GLN GLN A . n A 1 28 TRP 28 564 564 TRP TRP A . n A 1 29 SER 29 565 565 SER SER A . n A 1 30 GLN 30 566 566 GLN GLN A . n A 1 31 ASN 31 567 567 ASN ASN A . n A 1 32 PRO 32 568 568 PRO PRO A . n A 1 33 THR 33 569 569 THR THR A . n A 1 34 MSE 34 570 570 MSE MSE A . n A 1 35 LEU 35 571 571 LEU LEU A . n A 1 36 TYR 36 572 572 TYR TYR A . n A 1 37 ASN 37 573 573 ASN ASN A . n A 1 38 LYS 38 574 574 LYS LYS A . n A 1 39 MSE 39 575 575 MSE MSE A . n A 1 40 GLU 40 576 576 GLU GLU A . n A 1 41 PHE 41 577 577 PHE PHE A . n A 1 42 GLU 42 578 578 GLU GLU A . n A 1 43 PRO 43 579 579 PRO PRO A . n A 1 44 PHE 44 580 580 PHE PHE A . n A 1 45 GLN 45 581 581 GLN GLN A . n A 1 46 SER 46 582 582 SER SER A . n A 1 47 LEU 47 583 583 LEU LEU A . n A 1 48 VAL 48 584 584 VAL VAL A . n A 1 49 PRO 49 585 585 PRO PRO A . n A 1 50 LYS 50 586 586 LYS LYS A . n A 1 51 ALA 51 587 587 ALA ALA A . n A 1 52 ILE 52 588 588 ILE ILE A . n A 1 53 ARG 53 589 589 ARG ARG A . n A 1 54 GLY 54 590 590 GLY GLY A . n A 1 55 GLN 55 591 591 GLN GLN A . n A 1 56 TYR 56 592 592 TYR TYR A . n A 1 57 SER 57 593 593 SER SER A . n A 1 58 GLY 58 594 594 GLY GLY A . n A 1 59 PHE 59 595 595 PHE PHE A . n A 1 60 VAL 60 596 596 VAL VAL A . n A 1 61 ARG 61 597 597 ARG ARG A . n A 1 62 THR 62 598 598 THR THR A . n A 1 63 LEU 63 599 599 LEU LEU A . n A 1 64 PHE 64 600 600 PHE PHE A . n A 1 65 GLN 65 601 601 GLN GLN A . n A 1 66 GLN 66 602 602 GLN GLN A . n A 1 67 MSE 67 603 603 MSE MSE A . n A 1 68 ARG 68 604 604 ARG ARG A . n A 1 69 ASP 69 605 605 ASP ASP A . n A 1 70 VAL 70 606 606 VAL VAL A . n A 1 71 LEU 71 607 607 LEU LEU A . n A 1 72 GLY 72 608 608 GLY GLY A . n A 1 73 THR 73 609 609 THR THR A . n A 1 74 PHE 74 610 610 PHE PHE A . n A 1 75 ASP 75 611 611 ASP ASP A . n A 1 76 THR 76 612 612 THR THR A . n A 1 77 THR 77 613 613 THR THR A . n A 1 78 GLN 78 614 614 GLN GLN A . n A 1 79 ILE 79 615 615 ILE ILE A . n A 1 80 ILE 80 616 616 ILE ILE A . n A 1 81 LYS 81 617 617 LYS LYS A . n A 1 82 LEU 82 618 618 LEU LEU A . n A 1 83 LEU 83 619 619 LEU LEU A . n A 1 84 PRO 84 620 620 PRO PRO A . n A 1 85 PHE 85 621 621 PHE PHE A . n A 1 86 ALA 86 622 622 ALA ALA A . n A 1 87 ALA 87 623 623 ALA ALA A . n A 1 88 ALA 88 624 624 ALA ALA A . n A 1 89 PRO 89 625 625 PRO PRO A . n A 1 90 PRO 90 626 626 PRO PRO A . n A 1 91 LYS 91 627 627 LYS LYS A . n A 1 92 GLN 92 628 628 GLN GLN A . n A 1 93 SER 93 629 629 SER SER A . n A 1 94 ARG 94 630 630 ARG ARG A . n A 1 95 MSE 95 631 631 MSE MSE A . n A 1 96 GLN 96 632 632 GLN GLN A . n A 1 97 PHE 97 633 633 PHE PHE A . n A 1 98 SER 98 634 634 SER SER A . n A 1 99 SER 99 635 635 SER SER A . n A 1 100 LEU 100 636 636 LEU LEU A . n A 1 101 THR 101 637 637 THR THR A . n A 1 102 VAL 102 638 638 VAL VAL A . n A 1 103 ASN 103 639 639 ASN ASN A . n A 1 104 VAL 104 640 640 VAL VAL A . n A 1 105 ARG 105 641 641 ARG ARG A . n A 1 106 GLY 106 642 ? ? ? A . n A 1 107 SER 107 643 643 SER SER A . n A 1 108 GLY 108 644 644 GLY GLY A . n A 1 109 MSE 109 645 645 MSE MSE A . n A 1 110 ARG 110 646 646 ARG ARG A . n A 1 111 ILE 111 647 647 ILE ILE A . n A 1 112 LEU 112 648 648 LEU LEU A . n A 1 113 VAL 113 649 649 VAL VAL A . n A 1 114 ARG 114 650 650 ARG ARG A . n A 1 115 GLY 115 651 651 GLY GLY A . n A 1 116 ASN 116 652 652 ASN ASN A . n A 1 117 SER 117 653 653 SER SER A . n A 1 118 PRO 118 654 654 PRO PRO A . n A 1 119 VAL 119 655 655 VAL VAL A . n A 1 120 PHE 120 656 656 PHE PHE A . n A 1 121 ASN 121 657 657 ASN ASN A . n A 1 122 TYR 122 658 658 TYR TYR A . n A 1 123 ASN 123 659 659 ASN ASN A . n A 1 124 LYS 124 660 660 LYS LYS A . n A 1 125 THR 125 661 661 THR THR A . n A 1 126 THR 126 662 662 THR THR A . n A 1 127 LYS 127 663 663 LYS LYS A . n A 1 128 ARG 128 664 664 ARG ARG A . n A 1 129 LEU 129 665 665 LEU LEU A . n A 1 130 THR 130 666 666 THR THR A . n A 1 131 ILE 131 667 667 ILE ILE A . n A 1 132 LEU 132 668 668 LEU LEU A . n A 1 133 GLY 133 669 669 GLY GLY A . n A 1 134 LYS 134 670 670 LYS LYS A . n A 1 135 ASP 135 671 671 ASP ASP A . n A 1 136 ALA 136 672 672 ALA ALA A . n A 1 137 GLY 137 673 673 GLY GLY A . n A 1 138 THR 138 674 674 THR THR A . n A 1 139 LEU 139 675 675 LEU LEU A . n A 1 140 ILE 140 676 676 ILE ILE A . n A 1 141 GLU 141 677 677 GLU GLU A . n A 1 142 ASP 142 678 678 ASP ASP A . n A 1 143 PRO 143 679 679 PRO PRO A . n A 1 144 ASP 144 680 680 ASP ASP A . n A 1 145 GLU 145 681 681 GLU GLU A . n A 1 146 SER 146 682 682 SER SER A . n A 1 147 THR 147 683 683 THR THR A . n A 1 148 SER 148 684 684 SER SER A . n A 1 149 GLY 149 685 685 GLY GLY A . n A 1 150 VAL 150 686 686 VAL VAL A . n A 1 151 GLU 151 687 687 GLU GLU A . n A 1 152 SER 152 688 688 SER SER A . n A 1 153 ALA 153 689 689 ALA ALA A . n A 1 154 VAL 154 690 690 VAL VAL A . n A 1 155 LEU 155 691 691 LEU LEU A . n A 1 156 ARG 156 692 692 ARG ARG A . n A 1 157 GLY 157 693 693 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . B 2 HOH 72 2072 2072 HOH HOH A . B 2 HOH 73 2073 2073 HOH HOH A . B 2 HOH 74 2074 2074 HOH HOH A . B 2 HOH 75 2075 2075 HOH HOH A . B 2 HOH 76 2076 2076 HOH HOH A . B 2 HOH 77 2077 2077 HOH HOH A . B 2 HOH 78 2078 2078 HOH HOH A . B 2 HOH 79 2079 2079 HOH HOH A . B 2 HOH 80 2080 2080 HOH HOH A . B 2 HOH 81 2081 2081 HOH HOH A . B 2 HOH 82 2082 2082 HOH HOH A . B 2 HOH 83 2083 2083 HOH HOH A . B 2 HOH 84 2084 2084 HOH HOH A . B 2 HOH 85 2085 2085 HOH HOH A . B 2 HOH 86 2086 2086 HOH HOH A . B 2 HOH 87 2087 2087 HOH HOH A . B 2 HOH 88 2088 2088 HOH HOH A . B 2 HOH 89 2089 2089 HOH HOH A . B 2 HOH 90 2090 2090 HOH HOH A . B 2 HOH 91 2091 2091 HOH HOH A . B 2 HOH 92 2092 2092 HOH HOH A . B 2 HOH 93 2093 2093 HOH HOH A . B 2 HOH 94 2094 2094 HOH HOH A . B 2 HOH 95 2095 2095 HOH HOH A . B 2 HOH 96 2096 2096 HOH HOH A . B 2 HOH 97 2097 2097 HOH HOH A . B 2 HOH 98 2098 2098 HOH HOH A . B 2 HOH 99 2099 2099 HOH HOH A . B 2 HOH 100 2100 2100 HOH HOH A . B 2 HOH 101 2101 2101 HOH HOH A . B 2 HOH 102 2102 2102 HOH HOH A . B 2 HOH 103 2103 2103 HOH HOH A . B 2 HOH 104 2104 2104 HOH HOH A . B 2 HOH 105 2105 2105 HOH HOH A . B 2 HOH 106 2106 2106 HOH HOH A . B 2 HOH 107 2107 2107 HOH HOH A . B 2 HOH 108 2108 2108 HOH HOH A . B 2 HOH 109 2109 2109 HOH HOH A . B 2 HOH 110 2110 2110 HOH HOH A . B 2 HOH 111 2111 2111 HOH HOH A . B 2 HOH 112 2112 2112 HOH HOH A . B 2 HOH 113 2113 2113 HOH HOH A . B 2 HOH 114 2114 2114 HOH HOH A . B 2 HOH 115 2115 2115 HOH HOH A . B 2 HOH 116 2116 2116 HOH HOH A . B 2 HOH 117 2117 2117 HOH HOH A . B 2 HOH 118 2118 2118 HOH HOH A . B 2 HOH 119 2119 2119 HOH HOH A . B 2 HOH 120 2120 2120 HOH HOH A . B 2 HOH 121 2121 2121 HOH HOH A . B 2 HOH 122 2122 2122 HOH HOH A . B 2 HOH 123 2123 2123 HOH HOH A . B 2 HOH 124 2124 2124 HOH HOH A . B 2 HOH 125 2125 2125 HOH HOH A . B 2 HOH 126 2126 2126 HOH HOH A . B 2 HOH 127 2127 2127 HOH HOH A . B 2 HOH 128 2128 2128 HOH HOH A . B 2 HOH 129 2129 2129 HOH HOH A . B 2 HOH 130 2130 2130 HOH HOH A . B 2 HOH 131 2131 2131 HOH HOH A . B 2 HOH 132 2132 2132 HOH HOH A . B 2 HOH 133 2133 2133 HOH HOH A . B 2 HOH 134 2134 2134 HOH HOH A . B 2 HOH 135 2135 2135 HOH HOH A . B 2 HOH 136 2136 2136 HOH HOH A . B 2 HOH 137 2137 2137 HOH HOH A . B 2 HOH 138 2138 2138 HOH HOH A . B 2 HOH 139 2139 2139 HOH HOH A . B 2 HOH 140 2140 2140 HOH HOH A . B 2 HOH 141 2141 2141 HOH HOH A . B 2 HOH 142 2142 2142 HOH HOH A . B 2 HOH 143 2143 2143 HOH HOH A . B 2 HOH 144 2144 2144 HOH HOH A . B 2 HOH 145 2145 2145 HOH HOH A . B 2 HOH 146 2146 2146 HOH HOH A . B 2 HOH 147 2147 2147 HOH HOH A . B 2 HOH 148 2148 2148 HOH HOH A . B 2 HOH 149 2149 2149 HOH HOH A . B 2 HOH 150 2150 2150 HOH HOH A . B 2 HOH 151 2151 2151 HOH HOH A . B 2 HOH 152 2152 2152 HOH HOH A . B 2 HOH 153 2153 2153 HOH HOH A . B 2 HOH 154 2154 2154 HOH HOH A . B 2 HOH 155 2155 2155 HOH HOH A . B 2 HOH 156 2156 2156 HOH HOH A . B 2 HOH 157 2157 2157 HOH HOH A . B 2 HOH 158 2158 2158 HOH HOH A . B 2 HOH 159 2159 2159 HOH HOH A . B 2 HOH 160 2160 2160 HOH HOH A . B 2 HOH 161 2161 2161 HOH HOH A . B 2 HOH 162 2162 2162 HOH HOH A . B 2 HOH 163 2163 2163 HOH HOH A . B 2 HOH 164 2164 2164 HOH HOH A . B 2 HOH 165 2165 2165 HOH HOH A . B 2 HOH 166 2166 2166 HOH HOH A . B 2 HOH 167 2167 2167 HOH HOH A . B 2 HOH 168 2168 2168 HOH HOH A . B 2 HOH 169 2169 2169 HOH HOH A . B 2 HOH 170 2170 2170 HOH HOH A . B 2 HOH 171 2171 2171 HOH HOH A . B 2 HOH 172 2172 2172 HOH HOH A . B 2 HOH 173 2173 2173 HOH HOH A . B 2 HOH 174 2174 2174 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 34 A MSE 570 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 575 ? MET SELENOMETHIONINE 3 A MSE 67 A MSE 603 ? MET SELENOMETHIONINE 4 A MSE 95 A MSE 631 ? MET SELENOMETHIONINE 5 A MSE 109 A MSE 645 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2018 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-09 2 'Structure model' 1 1 2012-06-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Non-polymer description' 4 2 'Structure model' Other 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 autoSHARP phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A THR 609 ? A O A HOH 2085 ? ? 2.00 2 1 O A PHE 610 ? A O A HOH 2086 ? ? 2.07 3 1 OE1 A GLN 601 ? B O A HOH 2079 ? ? 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2071 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2071 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_656 _pdbx_validate_symm_contact.dist 1.17 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ARG _pdbx_validate_rmsd_bond.auth_seq_id_1 589 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ARG _pdbx_validate_rmsd_bond.auth_seq_id_2 589 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.343 _pdbx_validate_rmsd_bond.bond_target_value 1.521 _pdbx_validate_rmsd_bond.bond_deviation -0.178 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.027 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 567 ? ? -151.31 64.46 2 1 THR A 609 ? B -68.74 91.69 3 1 ASP A 611 ? B -36.63 116.68 4 1 VAL A 690 ? ? -101.67 -62.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 610 ? CG ? A PHE 74 CG 2 1 Y 1 A PHE 610 ? CD1 ? A PHE 74 CD1 3 1 Y 1 A PHE 610 ? CD2 ? A PHE 74 CD2 4 1 Y 1 A PHE 610 ? CE1 ? A PHE 74 CE1 5 1 Y 1 A PHE 610 ? CE2 ? A PHE 74 CE2 6 1 Y 1 A PHE 610 ? CZ ? A PHE 74 CZ 7 1 Y 1 A ARG 641 ? CA ? A ARG 105 CA 8 1 Y 1 A ARG 641 ? C ? A ARG 105 C 9 1 Y 1 A ARG 641 ? O ? A ARG 105 O 10 1 Y 1 A ARG 641 ? CB ? A ARG 105 CB 11 1 Y 1 A ARG 641 ? CG ? A ARG 105 CG 12 1 Y 1 A ARG 641 ? CD ? A ARG 105 CD 13 1 Y 1 A ARG 641 ? NE ? A ARG 105 NE 14 1 Y 1 A ARG 641 ? CZ ? A ARG 105 CZ 15 1 Y 1 A ARG 641 ? NH1 ? A ARG 105 NH1 16 1 Y 1 A ARG 641 ? NH2 ? A ARG 105 NH2 17 1 Y 1 A SER 643 ? N ? A SER 107 N 18 1 Y 1 A SER 643 ? CA ? A SER 107 CA 19 1 Y 1 A SER 643 ? CB ? A SER 107 CB 20 1 Y 1 A SER 643 ? OG ? A SER 107 OG 21 1 Y 1 A ARG 692 ? NE ? A ARG 156 NE 22 1 Y 1 A ARG 692 ? CZ ? A ARG 156 CZ 23 1 Y 1 A ARG 692 ? NH1 ? A ARG 156 NH1 24 1 Y 1 A ARG 692 ? NH2 ? A ARG 156 NH2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 642 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 106 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #