data_2W5H # _entry.id 2W5H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2W5H PDBE EBI-38313 WWPDB D_1290038313 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2W5B unspecified 'HUMAN NEK2 KINASE ATPGAMMAS-BOUND' PDB 2W5A unspecified 'HUMAN NEK2 KINASE ADP-BOUND' PDB 2JAV unspecified 'HUMAN KINASE WITH PYRROLE-INDOLINONE LIGAND' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2W5H _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-12-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Bayliss, R.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Insights Into the Conformational Variability and Regulation of Human Nek2 Kinase.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 386 _citation.page_first 476 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19124027 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2008.12.033 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Westwood, I.' 1 primary 'Cheary, D.M.' 2 primary 'Baxter, J.E.' 3 primary 'Richards, M.W.' 4 primary 'Van Montfort, R.L.' 5 primary 'Fry, A.M.' 6 primary 'Bayliss, R.' 7 # _cell.entry_id 2W5H _cell.length_a 99.739 _cell.length_b 56.962 _cell.length_c 80.612 _cell.angle_alpha 90.00 _cell.angle_beta 133.36 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W5H _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SERINE/THREONINE-PROTEIN KINASE NEK2' 32632.451 1 2.7.11.1 YES 'KINASE DOMAIN, RESIDUES 1-271' ? 2 water nat water 18.015 120 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NIMA-RELATED PROTEIN KINASE 2, NIMA-LIKE PROTEIN KINASE 1, HSPK 21, NEK2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNT TLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF GLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRY SDELNEIITRMLNLKDYHRPSVEEILENPLILEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNT TLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF GLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRY SDELNEIITRMLNLKDYHRPSVEEILENPLILEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 SER n 1 4 ARG n 1 5 ALA n 1 6 GLU n 1 7 ASP n 1 8 TYR n 1 9 GLU n 1 10 VAL n 1 11 LEU n 1 12 TYR n 1 13 THR n 1 14 ILE n 1 15 GLY n 1 16 THR n 1 17 GLY n 1 18 SER n 1 19 TYR n 1 20 GLY n 1 21 ARG n 1 22 CYS n 1 23 GLN n 1 24 LYS n 1 25 ILE n 1 26 ARG n 1 27 ARG n 1 28 LYS n 1 29 SER n 1 30 ASP n 1 31 GLY n 1 32 LYS n 1 33 ILE n 1 34 LEU n 1 35 VAL n 1 36 TRP n 1 37 LYS n 1 38 GLU n 1 39 LEU n 1 40 ASP n 1 41 TYR n 1 42 GLY n 1 43 SER n 1 44 MET n 1 45 THR n 1 46 GLU n 1 47 ALA n 1 48 GLU n 1 49 LYS n 1 50 GLN n 1 51 MET n 1 52 LEU n 1 53 VAL n 1 54 SER n 1 55 GLU n 1 56 VAL n 1 57 ASN n 1 58 LEU n 1 59 LEU n 1 60 ARG n 1 61 GLU n 1 62 LEU n 1 63 LYS n 1 64 HIS n 1 65 PRO n 1 66 ASN n 1 67 ILE n 1 68 VAL n 1 69 ARG n 1 70 TYR n 1 71 TYR n 1 72 ASP n 1 73 ARG n 1 74 ILE n 1 75 ILE n 1 76 ASP n 1 77 ARG n 1 78 THR n 1 79 ASN n 1 80 THR n 1 81 THR n 1 82 LEU n 1 83 TYR n 1 84 ILE n 1 85 VAL n 1 86 MET n 1 87 GLU n 1 88 TYR n 1 89 CYS n 1 90 GLU n 1 91 GLY n 1 92 GLY n 1 93 ASP n 1 94 LEU n 1 95 ALA n 1 96 SER n 1 97 VAL n 1 98 ILE n 1 99 THR n 1 100 LYS n 1 101 GLY n 1 102 THR n 1 103 LYS n 1 104 GLU n 1 105 ARG n 1 106 GLN n 1 107 TYR n 1 108 LEU n 1 109 ASP n 1 110 GLU n 1 111 GLU n 1 112 PHE n 1 113 VAL n 1 114 LEU n 1 115 ARG n 1 116 VAL n 1 117 MET n 1 118 THR n 1 119 GLN n 1 120 LEU n 1 121 THR n 1 122 LEU n 1 123 ALA n 1 124 LEU n 1 125 LYS n 1 126 GLU n 1 127 CYS n 1 128 HIS n 1 129 ARG n 1 130 ARG n 1 131 SER n 1 132 ASP n 1 133 GLY n 1 134 GLY n 1 135 HIS n 1 136 THR n 1 137 VAL n 1 138 LEU n 1 139 HIS n 1 140 ARG n 1 141 ASP n 1 142 LEU n 1 143 LYS n 1 144 PRO n 1 145 ALA n 1 146 ASN n 1 147 VAL n 1 148 PHE n 1 149 LEU n 1 150 ASP n 1 151 GLY n 1 152 LYS n 1 153 GLN n 1 154 ASN n 1 155 VAL n 1 156 LYS n 1 157 LEU n 1 158 GLY n 1 159 ASP n 1 160 PHE n 1 161 GLY n 1 162 LEU n 1 163 ALA n 1 164 ARG n 1 165 ILE n 1 166 LEU n 1 167 ASN n 1 168 HIS n 1 169 ASP n 1 170 THR n 1 171 SER n 1 172 PHE n 1 173 ALA n 1 174 LYS n 1 175 ALA n 1 176 PHE n 1 177 VAL n 1 178 GLY n 1 179 THR n 1 180 PRO n 1 181 TYR n 1 182 TYR n 1 183 MET n 1 184 SER n 1 185 PRO n 1 186 GLU n 1 187 GLN n 1 188 MET n 1 189 ASN n 1 190 ARG n 1 191 MET n 1 192 SER n 1 193 TYR n 1 194 ASN n 1 195 GLU n 1 196 LYS n 1 197 SER n 1 198 ASP n 1 199 ILE n 1 200 TRP n 1 201 SER n 1 202 LEU n 1 203 GLY n 1 204 CYS n 1 205 LEU n 1 206 LEU n 1 207 TYR n 1 208 GLU n 1 209 LEU n 1 210 CYS n 1 211 ALA n 1 212 LEU n 1 213 MET n 1 214 PRO n 1 215 PRO n 1 216 PHE n 1 217 THR n 1 218 ALA n 1 219 PHE n 1 220 SER n 1 221 GLN n 1 222 LYS n 1 223 GLU n 1 224 LEU n 1 225 ALA n 1 226 GLY n 1 227 LYS n 1 228 ILE n 1 229 ARG n 1 230 GLU n 1 231 GLY n 1 232 LYS n 1 233 PHE n 1 234 ARG n 1 235 ARG n 1 236 ILE n 1 237 PRO n 1 238 TYR n 1 239 ARG n 1 240 TYR n 1 241 SER n 1 242 ASP n 1 243 GLU n 1 244 LEU n 1 245 ASN n 1 246 GLU n 1 247 ILE n 1 248 ILE n 1 249 THR n 1 250 ARG n 1 251 MET n 1 252 LEU n 1 253 ASN n 1 254 LEU n 1 255 LYS n 1 256 ASP n 1 257 TYR n 1 258 HIS n 1 259 ARG n 1 260 PRO n 1 261 SER n 1 262 VAL n 1 263 GLU n 1 264 GLU n 1 265 ILE n 1 266 LEU n 1 267 GLU n 1 268 ASN n 1 269 PRO n 1 270 LEU n 1 271 ILE n 1 272 LEU n 1 273 GLU n 1 274 HIS n 1 275 HIS n 1 276 HIS n 1 277 HIS n 1 278 HIS n 1 279 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET22B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP NEK2_HUMAN 1 ? ? P51955 ? 2 PDB 2W5H 1 ? ? 2W5H ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2W5H A 1 ? 271 ? P51955 1 ? 271 ? 1 271 2 2 2W5H A 272 ? 279 ? 2W5H 272 ? 279 ? 272 279 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2W5H _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 175 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P51955 _struct_ref_seq_dif.db_mon_id THR _struct_ref_seq_dif.pdbx_seq_db_seq_num 175 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 175 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2W5H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_percent_sol 51.85 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '50 MM TRIS, PH 8.5 2-10% PEG8000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.92 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2W5H _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 58.60 _reflns.d_resolution_high 2.33 _reflns.number_obs 12969 _reflns.number_all ? _reflns.percent_possible_obs 91.3 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.10 _reflns.B_iso_Wilson_estimate 21.14 _reflns.pdbx_redundancy 3.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2W5H _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12529 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.010 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 58.61 _refine.ls_d_res_high 2.33 _refine.ls_percent_reflns_obs 88.1 _refine.ls_R_factor_obs 0.197 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.254 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 587 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 31.73 _refine.aniso_B[1][1] 1.15370 _refine.aniso_B[2][2] -4.28670 _refine.aniso_B[3][3] 3.13300 _refine.aniso_B[1][2] -0.00000 _refine.aniso_B[1][3] -6.17790 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.34 _refine.solvent_model_param_bsol 36.42 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.360 _refine.pdbx_overall_phase_error 23.880 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2143 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 2263 _refine_hist.d_res_high 2.33 _refine_hist.d_res_low 58.61 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 2209 'X-RAY DIFFRACTION' ? f_angle_d 0.964 ? ? 2983 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.549 ? ? 820 'X-RAY DIFFRACTION' ? f_chiral_restr 0.060 ? ? 324 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 383 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.3300 2.5645 2484 0.2170 74.00 0.3020 . . 119 . . 'X-RAY DIFFRACTION' . 2.5645 2.9356 3047 0.2059 90.00 0.2616 . . 150 . . 'X-RAY DIFFRACTION' . 2.9356 3.6985 3175 0.1865 94.00 0.2536 . . 160 . . 'X-RAY DIFFRACTION' . 3.6985 58.6261 3236 0.1806 94.00 0.2292 . . 158 . . # _struct.entry_id 2W5H _struct.title 'Human Nek2 kinase Apo' _struct.pdbx_descriptor 'SERINE/THREONINE-PROTEIN KINASE NEK2 (E.C.2.7.11.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2W5H _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;SER/THR PROTEIN KINASE, KINASE, NUCLEUS, MEIOSIS, MITOSIS, CYTOPLASM, SERINE/THREONINE-PROTEIN KINASE, METAL-BINDING, PHOSPHOPROTEIN, NUCLEOTIDE-BINDING, MAGNESIUM, CELL CYCLE, ATP-BINDING, TRANSFERASE, CENTROSOME SPLITTING, ALTERNATIVE SPLICING, COILED COIL, POLYMORPHISM, CELL DIVISION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 4 ? GLU A 6 ? ARG A 4 GLU A 6 5 ? 3 HELX_P HELX_P2 2 GLY A 42 ? MET A 44 ? GLY A 42 MET A 44 5 ? 3 HELX_P HELX_P3 3 ALA A 47 ? LEU A 62 ? ALA A 47 LEU A 62 1 ? 16 HELX_P HELX_P4 4 LEU A 94 ? GLU A 104 ? LEU A 94 GLU A 104 1 ? 11 HELX_P HELX_P5 5 ASP A 109 ? ARG A 130 ? ASP A 109 ARG A 130 1 ? 22 HELX_P HELX_P6 6 LYS A 143 ? ALA A 145 ? LYS A 143 ALA A 145 5 ? 3 HELX_P HELX_P7 7 PHE A 160 ? ARG A 164 ? PHE A 160 ARG A 164 5 ? 5 HELX_P HELX_P8 8 HIS A 168 ? VAL A 177 ? HIS A 168 VAL A 177 1 ? 10 HELX_P HELX_P9 9 SER A 184 ? ASN A 189 ? SER A 184 ASN A 189 1 ? 6 HELX_P HELX_P10 10 ASN A 194 ? LEU A 212 ? ASN A 194 LEU A 212 1 ? 19 HELX_P HELX_P11 11 SER A 220 ? GLY A 231 ? SER A 220 GLY A 231 1 ? 12 HELX_P HELX_P12 12 SER A 241 ? LEU A 252 ? SER A 241 LEU A 252 1 ? 12 HELX_P HELX_P13 13 LYS A 255 ? ARG A 259 ? LYS A 255 ARG A 259 5 ? 5 HELX_P HELX_P14 14 SER A 261 ? GLU A 267 ? SER A 261 GLU A 267 1 ? 7 HELX_P HELX_P15 15 LEU A 272 ? HIS A 276 ? LEU A 272 HIS A 276 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TYR A 8 ? GLY A 17 ? TYR A 8 GLY A 17 AA 2 GLY A 20 ? ARG A 27 ? GLY A 20 ARG A 27 AA 3 ILE A 33 ? ASP A 40 ? ILE A 33 ASP A 40 AA 4 THR A 81 ? GLU A 87 ? THR A 81 GLU A 87 AA 5 TYR A 70 ? ASP A 76 ? TYR A 70 ASP A 76 AB 1 GLY A 92 ? ASP A 93 ? GLY A 92 ASP A 93 AB 2 VAL A 147 ? LEU A 149 ? VAL A 147 LEU A 149 AB 3 VAL A 155 ? LEU A 157 ? VAL A 155 LEU A 157 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLY A 17 ? N GLY A 17 O GLY A 20 ? O GLY A 20 AA 2 3 N ILE A 25 ? N ILE A 25 O LEU A 34 ? O LEU A 34 AA 3 4 N LEU A 39 ? N LEU A 39 O LEU A 82 ? O LEU A 82 AA 4 5 O VAL A 85 ? O VAL A 85 N TYR A 71 ? N TYR A 71 AB 1 2 O GLY A 92 ? O GLY A 92 N LEU A 149 ? N LEU A 149 AB 2 3 N PHE A 148 ? N PHE A 148 O LYS A 156 ? O LYS A 156 # _database_PDB_matrix.entry_id 2W5H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2W5H _atom_sites.fract_transf_matrix[1][1] 0.010026 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009468 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017556 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017062 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 MET 51 51 51 MET MET A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 GLN 119 119 119 GLN GLN A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 ASP 132 132 ? ? ? A . n A 1 133 GLY 133 133 ? ? ? A . n A 1 134 GLY 134 134 ? ? ? A . n A 1 135 HIS 135 135 ? ? ? A . n A 1 136 THR 136 136 ? ? ? A . n A 1 137 VAL 137 137 ? ? ? A . n A 1 138 LEU 138 138 ? ? ? A . n A 1 139 HIS 139 139 139 HIS HIS A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 ASN 146 146 146 ASN ASN A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 ILE 165 165 ? ? ? A . n A 1 166 LEU 166 166 ? ? ? A . n A 1 167 ASN 167 167 ? ? ? A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 PRO 180 180 180 PRO PRO A . n A 1 181 TYR 181 181 181 TYR TYR A . n A 1 182 TYR 182 182 182 TYR TYR A . n A 1 183 MET 183 183 183 MET MET A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 PRO 185 185 185 PRO PRO A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 GLN 187 187 187 GLN GLN A . n A 1 188 MET 188 188 188 MET MET A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 ARG 190 190 ? ? ? A . n A 1 191 MET 191 191 ? ? ? A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 TYR 193 193 193 TYR TYR A . n A 1 194 ASN 194 194 194 ASN ASN A . n A 1 195 GLU 195 195 195 GLU GLU A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 ASP 198 198 198 ASP ASP A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 TRP 200 200 200 TRP TRP A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 GLY 203 203 203 GLY GLY A . n A 1 204 CYS 204 204 204 CYS CYS A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 TYR 207 207 207 TYR TYR A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 CYS 210 210 210 CYS CYS A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 MET 213 213 213 MET MET A . n A 1 214 PRO 214 214 214 PRO PRO A . n A 1 215 PRO 215 215 215 PRO PRO A . n A 1 216 PHE 216 216 216 PHE PHE A . n A 1 217 THR 217 217 217 THR THR A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 PHE 219 219 219 PHE PHE A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 GLN 221 221 221 GLN GLN A . n A 1 222 LYS 222 222 222 LYS LYS A . n A 1 223 GLU 223 223 223 GLU GLU A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 ILE 228 228 228 ILE ILE A . n A 1 229 ARG 229 229 229 ARG ARG A . n A 1 230 GLU 230 230 230 GLU GLU A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 ARG 234 234 234 ARG ARG A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 PRO 237 237 237 PRO PRO A . n A 1 238 TYR 238 238 238 TYR TYR A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 TYR 240 240 240 TYR TYR A . n A 1 241 SER 241 241 241 SER SER A . n A 1 242 ASP 242 242 242 ASP ASP A . n A 1 243 GLU 243 243 243 GLU GLU A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 ASN 245 245 245 ASN ASN A . n A 1 246 GLU 246 246 246 GLU GLU A . n A 1 247 ILE 247 247 247 ILE ILE A . n A 1 248 ILE 248 248 248 ILE ILE A . n A 1 249 THR 249 249 249 THR THR A . n A 1 250 ARG 250 250 250 ARG ARG A . n A 1 251 MET 251 251 251 MET MET A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 ASN 253 253 253 ASN ASN A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 LYS 255 255 255 LYS LYS A . n A 1 256 ASP 256 256 256 ASP ASP A . n A 1 257 TYR 257 257 257 TYR TYR A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 ARG 259 259 259 ARG ARG A . n A 1 260 PRO 260 260 260 PRO PRO A . n A 1 261 SER 261 261 261 SER SER A . n A 1 262 VAL 262 262 262 VAL VAL A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 GLU 264 264 264 GLU GLU A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 GLU 267 267 267 GLU GLU A . n A 1 268 ASN 268 268 268 ASN ASN A . n A 1 269 PRO 269 269 269 PRO PRO A . n A 1 270 LEU 270 270 270 LEU LEU A . n A 1 271 ILE 271 271 271 ILE ILE A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 GLU 273 273 273 GLU GLU A . n A 1 274 HIS 274 274 274 HIS HIS A . n A 1 275 HIS 275 275 275 HIS HIS A . n A 1 276 HIS 276 276 276 HIS HIS A . n A 1 277 HIS 277 277 277 HIS HIS A . n A 1 278 HIS 278 278 278 HIS HIS A . n A 1 279 HIS 279 279 279 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . B 2 HOH 72 2072 2072 HOH HOH A . B 2 HOH 73 2073 2073 HOH HOH A . B 2 HOH 74 2074 2074 HOH HOH A . B 2 HOH 75 2075 2075 HOH HOH A . B 2 HOH 76 2076 2076 HOH HOH A . B 2 HOH 77 2077 2077 HOH HOH A . B 2 HOH 78 2078 2078 HOH HOH A . B 2 HOH 79 2079 2079 HOH HOH A . B 2 HOH 80 2080 2080 HOH HOH A . B 2 HOH 81 2081 2081 HOH HOH A . B 2 HOH 82 2082 2082 HOH HOH A . B 2 HOH 83 2083 2083 HOH HOH A . B 2 HOH 84 2084 2084 HOH HOH A . B 2 HOH 85 2085 2085 HOH HOH A . B 2 HOH 86 2086 2086 HOH HOH A . B 2 HOH 87 2087 2087 HOH HOH A . B 2 HOH 88 2088 2088 HOH HOH A . B 2 HOH 89 2089 2089 HOH HOH A . B 2 HOH 90 2090 2090 HOH HOH A . B 2 HOH 91 2091 2091 HOH HOH A . B 2 HOH 92 2092 2092 HOH HOH A . B 2 HOH 93 2093 2093 HOH HOH A . B 2 HOH 94 2094 2094 HOH HOH A . B 2 HOH 95 2095 2095 HOH HOH A . B 2 HOH 96 2096 2096 HOH HOH A . B 2 HOH 97 2097 2097 HOH HOH A . B 2 HOH 98 2098 2098 HOH HOH A . B 2 HOH 99 2099 2099 HOH HOH A . B 2 HOH 100 2100 2100 HOH HOH A . B 2 HOH 101 2101 2101 HOH HOH A . B 2 HOH 102 2102 2102 HOH HOH A . B 2 HOH 103 2103 2103 HOH HOH A . B 2 HOH 104 2104 2104 HOH HOH A . B 2 HOH 105 2105 2105 HOH HOH A . B 2 HOH 106 2106 2106 HOH HOH A . B 2 HOH 107 2107 2107 HOH HOH A . B 2 HOH 108 2108 2108 HOH HOH A . B 2 HOH 109 2109 2109 HOH HOH A . B 2 HOH 110 2110 2110 HOH HOH A . B 2 HOH 111 2111 2111 HOH HOH A . B 2 HOH 112 2112 2112 HOH HOH A . B 2 HOH 113 2113 2113 HOH HOH A . B 2 HOH 114 2114 2114 HOH HOH A . B 2 HOH 115 2115 2115 HOH HOH A . B 2 HOH 116 2116 2116 HOH HOH A . B 2 HOH 117 2117 2117 HOH HOH A . B 2 HOH 118 2118 2118 HOH HOH A . B 2 HOH 119 2119 2119 HOH HOH A . B 2 HOH 120 2120 2120 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2067 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-23 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -11.8774 _pdbx_refine_tls.origin_y 0.5080 _pdbx_refine_tls.origin_z 12.6833 _pdbx_refine_tls.T[1][1] 0.0774 _pdbx_refine_tls.T[2][2] 0.1032 _pdbx_refine_tls.T[3][3] 0.0581 _pdbx_refine_tls.T[1][2] 0.0132 _pdbx_refine_tls.T[1][3] 0.0197 _pdbx_refine_tls.T[2][3] 0.0105 _pdbx_refine_tls.L[1][1] 0.8959 _pdbx_refine_tls.L[2][2] 0.9991 _pdbx_refine_tls.L[3][3] 0.2125 _pdbx_refine_tls.L[1][2] -0.5467 _pdbx_refine_tls.L[1][3] 0.1119 _pdbx_refine_tls.L[2][3] -0.0528 _pdbx_refine_tls.S[1][1] -0.0941 _pdbx_refine_tls.S[1][2] -0.1266 _pdbx_refine_tls.S[1][3] -0.0530 _pdbx_refine_tls.S[2][1] 0.1092 _pdbx_refine_tls.S[2][2] 0.0862 _pdbx_refine_tls.S[2][3] -0.0223 _pdbx_refine_tls.S[3][1] -0.0415 _pdbx_refine_tls.S[3][2] 0.0616 _pdbx_refine_tls.S[3][3] 0.0180 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'CHAIN A' # _software.name PHENIX _software.classification refinement _software.version '(PHENIX.REFINE)' _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 2W5H _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, THR 175 TO ALA' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'C-TERMINAL LEHHHHHH FROM VECTOR SEQUENCE T175A MUTATION' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 140 ? ? -140.73 52.97 2 1 LEU A 142 ? ? -96.68 48.23 3 1 ASN A 194 ? ? -164.61 102.06 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 3 ? OG ? A SER 3 OG 2 1 Y 1 A ARG 4 ? CG ? A ARG 4 CG 3 1 Y 1 A ARG 4 ? CD ? A ARG 4 CD 4 1 Y 1 A ARG 4 ? NE ? A ARG 4 NE 5 1 Y 1 A ARG 4 ? CZ ? A ARG 4 CZ 6 1 Y 1 A ARG 4 ? NH1 ? A ARG 4 NH1 7 1 Y 1 A ARG 4 ? NH2 ? A ARG 4 NH2 8 1 Y 1 A LYS 37 ? CD ? A LYS 37 CD 9 1 Y 1 A LYS 37 ? CE ? A LYS 37 CE 10 1 Y 1 A LYS 37 ? NZ ? A LYS 37 NZ 11 1 Y 1 A GLU 46 ? CG ? A GLU 46 CG 12 1 Y 1 A GLU 46 ? CD ? A GLU 46 CD 13 1 Y 1 A GLU 46 ? OE1 ? A GLU 46 OE1 14 1 Y 1 A GLU 46 ? OE2 ? A GLU 46 OE2 15 1 Y 1 A LEU 58 ? CG ? A LEU 58 CG 16 1 Y 1 A LEU 58 ? CD1 ? A LEU 58 CD1 17 1 Y 1 A LEU 58 ? CD2 ? A LEU 58 CD2 18 1 Y 1 A ARG 60 ? CG ? A ARG 60 CG 19 1 Y 1 A ARG 60 ? CD ? A ARG 60 CD 20 1 Y 1 A ARG 60 ? NE ? A ARG 60 NE 21 1 Y 1 A ARG 60 ? CZ ? A ARG 60 CZ 22 1 Y 1 A ARG 60 ? NH1 ? A ARG 60 NH1 23 1 Y 1 A ARG 60 ? NH2 ? A ARG 60 NH2 24 1 Y 0 A ARG 69 ? CA A A ARG 69 CA 25 1 Y 0 A ARG 69 ? CB A A ARG 69 CB 26 1 Y 0 A ARG 69 ? CG A A ARG 69 CG 27 1 Y 0 A ARG 69 ? CD A A ARG 69 CD 28 1 Y 0 A ARG 69 ? NE A A ARG 69 NE 29 1 Y 0 A ARG 69 ? CZ A A ARG 69 CZ 30 1 Y 0 A ARG 69 ? NH1 A A ARG 69 NH1 31 1 Y 0 A ARG 69 ? NH2 A A ARG 69 NH2 32 1 Y 1 A ASN 79 ? CG ? A ASN 79 CG 33 1 Y 1 A ASN 79 ? OD1 ? A ASN 79 OD1 34 1 Y 1 A ASN 79 ? ND2 ? A ASN 79 ND2 35 1 Y 1 A LYS 103 ? CG ? A LYS 103 CG 36 1 Y 1 A LYS 103 ? CD ? A LYS 103 CD 37 1 Y 1 A LYS 103 ? CE ? A LYS 103 CE 38 1 Y 1 A LYS 103 ? NZ ? A LYS 103 NZ 39 1 Y 1 A ARG 164 ? CG ? A ARG 164 CG 40 1 Y 1 A ARG 164 ? CD ? A ARG 164 CD 41 1 Y 1 A ARG 164 ? NE ? A ARG 164 NE 42 1 Y 1 A ARG 164 ? CZ ? A ARG 164 CZ 43 1 Y 1 A ARG 164 ? NH1 ? A ARG 164 NH1 44 1 Y 1 A ARG 164 ? NH2 ? A ARG 164 NH2 45 1 Y 1 A LYS 174 ? CG ? A LYS 174 CG 46 1 Y 1 A LYS 174 ? CD ? A LYS 174 CD 47 1 Y 1 A LYS 174 ? CE ? A LYS 174 CE 48 1 Y 1 A LYS 174 ? NZ ? A LYS 174 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A ASP 132 ? A ASP 132 4 1 Y 1 A GLY 133 ? A GLY 133 5 1 Y 1 A GLY 134 ? A GLY 134 6 1 Y 1 A HIS 135 ? A HIS 135 7 1 Y 1 A THR 136 ? A THR 136 8 1 Y 1 A VAL 137 ? A VAL 137 9 1 Y 1 A LEU 138 ? A LEU 138 10 1 Y 1 A ILE 165 ? A ILE 165 11 1 Y 1 A LEU 166 ? A LEU 166 12 1 Y 1 A ASN 167 ? A ASN 167 13 1 Y 1 A ARG 190 ? A ARG 190 14 1 Y 1 A MET 191 ? A MET 191 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #