data_2XO1 # _entry.id 2XO1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2XO1 pdb_00002xo1 10.2210/pdb2xo1/pdb PDBE EBI-44997 ? ? WWPDB D_1290044997 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-06 2 'Structure model' 1 1 2018-06-06 3 'Structure model' 1 2 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Structure summary' 5 3 'Structure model' Advisory 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' entity 4 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 2 'Structure model' struct 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' database_2 9 3 'Structure model' pdbx_database_status 10 3 'Structure model' pdbx_struct_conn_angle 11 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 12 3 'Structure model' struct_conn 13 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_ISSN' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation_author.name' 7 2 'Structure model' '_entity.pdbx_description' 8 2 'Structure model' '_struct.title' 9 3 'Structure model' '_database_2.pdbx_DOI' 10 3 'Structure model' '_database_2.pdbx_database_accession' 11 3 'Structure model' '_pdbx_database_status.status_code_sf' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.value' 15 3 'Structure model' '_struct_conn.pdbx_dist_value' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XO1 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-08-09 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XNW unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO-TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING' PDB 2XNZ unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO ACETOGUANAMINE IDENTIFIED BY VIRTUAL SCREENING' PDB 2XO0 unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO 24-DIAMINO-1,3,5-TRIAZINE IDENTIFIED BY VIRTUAL SCREENING' PDB 2G9C unspecified 'MODIFIED PYRIMIDINES SPECIFICALLY BIND THE PURINE RIBOSWITCH' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Daldrop, P.' 1 ? 'Reyes, F.E.' 2 ? 'Robinson, D.A.' 3 ? 'Hammond, C.M.' 4 ? 'Lilley, D.M.J.' 5 ? 'Batey, R.T.' 6 ? 'Brenk, R.' 7 ? # _citation.id primary _citation.title 'Novel ligands for a purine riboswitch discovered by RNA-ligand docking.' _citation.journal_abbrev 'Chem. Biol.' _citation.journal_volume 18 _citation.page_first 324 _citation.page_last 335 _citation.year 2011 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1879-1301 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21439477 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2010.12.020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Daldrop, P.' 1 ? primary 'Reyes, F.E.' 2 ? primary 'Robinson, D.A.' 3 ? primary 'Hammond, C.M.' 4 ? primary 'Lilley, D.M.' 5 ? primary 'Batey, R.T.' 6 ? primary 'Brenk, R.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch' 21491.768 1 ? ? 'APTAMER DOMAIN, RESIDUES 15-81' ? 2 non-polymer syn N-METHYL-9H-PURIN-6-AMINE 149.153 1 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 7 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 6 water nat water 18.015 226 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GAACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-METHYL-9H-PURIN-6-AMINE N6M 3 'COBALT HEXAMMINE(III)' NCO 4 'ACETATE ION' ACT 5 'POTASSIUM ION' K 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 U n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'BACILLUS SUBTILIS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1423 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 N6M non-polymer . N-METHYL-9H-PURIN-6-AMINE 'N6-METHYL ADENINE' 'C6 H7 N5' 149.153 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 ? ? ? A . n A 1 2 A 2 16 16 A A A . n A 1 3 A 3 17 17 A A A . n A 1 4 C 4 18 18 C C A . n A 1 5 A 5 19 19 A A A . n A 1 6 U 6 20 20 U U A . n A 1 7 A 7 21 21 A A A . n A 1 8 U 8 22 22 U U A . n A 1 9 A 9 23 23 A A A . n A 1 10 A 10 24 24 A A A . n A 1 11 U 11 25 25 U U A . n A 1 12 C 12 26 26 C C A . n A 1 13 G 13 27 27 G G A . n A 1 14 C 14 28 28 C C A . n A 1 15 G 15 29 29 G G A . n A 1 16 U 16 30 30 U U A . n A 1 17 G 17 31 31 G G A . n A 1 18 G 18 32 32 G G A . n A 1 19 A 19 33 33 A A A . n A 1 20 U 20 34 34 U U A . n A 1 21 A 21 35 35 A A A . n A 1 22 U 22 36 36 U U A . n A 1 23 G 23 37 37 G G A . n A 1 24 G 24 38 38 G G A . n A 1 25 C 25 39 39 C C A . n A 1 26 A 26 40 40 A A A . n A 1 27 C 27 41 41 C C A . n A 1 28 G 28 42 42 G G A . n A 1 29 C 29 43 43 C C A . n A 1 30 A 30 44 44 A A A . n A 1 31 A 31 45 45 A A A . n A 1 32 G 32 46 46 G G A . n A 1 33 U 33 47 47 U U A . n A 1 34 U 34 48 48 U U A . n A 1 35 U 35 49 49 U U A . n A 1 36 C 36 50 50 C C A . n A 1 37 U 37 51 51 U U A . n A 1 38 A 38 52 52 A A A . n A 1 39 C 39 53 53 C C A . n A 1 40 C 40 54 54 C C A . n A 1 41 G 41 55 55 G G A . n A 1 42 G 42 56 56 G G A . n A 1 43 G 43 57 57 G G A . n A 1 44 C 44 58 58 C C A . n A 1 45 A 45 59 59 A A A . n A 1 46 C 46 60 60 C C A . n A 1 47 C 47 61 61 C C A . n A 1 48 G 48 62 62 G G A . n A 1 49 U 49 63 63 U U A . n A 1 50 A 50 64 64 A A A . n A 1 51 A 51 65 65 A A A . n A 1 52 A 52 66 66 A A A . n A 1 53 U 53 67 67 U U A . n A 1 54 G 54 68 68 G G A . n A 1 55 U 55 69 69 U U A . n A 1 56 C 56 70 70 C C A . n A 1 57 C 57 71 71 C C A . n A 1 58 G 58 72 72 G G A . n A 1 59 A 59 73 73 A A A . n A 1 60 U 60 74 74 U U A . n A 1 61 U 61 75 75 U U A . n A 1 62 A 62 76 76 A A A . n A 1 63 U 63 77 77 U U A . n A 1 64 G 64 78 78 G G A . n A 1 65 U 65 79 79 U U A . n A 1 66 C 66 80 80 C C A . n A 1 67 C 67 81 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N6M 1 1081 1081 N6M N6M A . C 3 NCO 1 1082 1082 NCO NCO A . D 3 NCO 1 1083 1083 NCO NCO A . E 3 NCO 1 1084 1084 NCO NCO A . F 3 NCO 1 1085 1085 NCO NCO A . G 3 NCO 1 1086 1086 NCO NCO A . H 3 NCO 1 1087 1087 NCO NCO A . I 3 NCO 1 1088 1088 NCO NCO A . J 4 ACT 1 1089 1089 ACT ACT A . K 5 K 1 1090 1090 K K A . L 5 K 1 1091 1091 K K A . M 5 K 1 1092 1092 K K A . N 6 HOH 1 2001 2001 HOH HOH A . N 6 HOH 2 2002 2002 HOH HOH A . N 6 HOH 3 2003 2003 HOH HOH A . N 6 HOH 4 2004 2004 HOH HOH A . N 6 HOH 5 2005 2005 HOH HOH A . N 6 HOH 6 2006 2006 HOH HOH A . N 6 HOH 7 2007 2007 HOH HOH A . N 6 HOH 8 2008 2008 HOH HOH A . N 6 HOH 9 2009 2009 HOH HOH A . N 6 HOH 10 2010 2010 HOH HOH A . N 6 HOH 11 2011 2011 HOH HOH A . N 6 HOH 12 2012 2012 HOH HOH A . N 6 HOH 13 2013 2013 HOH HOH A . N 6 HOH 14 2014 2014 HOH HOH A . N 6 HOH 15 2015 2015 HOH HOH A . N 6 HOH 16 2016 2016 HOH HOH A . N 6 HOH 17 2017 2017 HOH HOH A . N 6 HOH 18 2018 2018 HOH HOH A . N 6 HOH 19 2019 2019 HOH HOH A . N 6 HOH 20 2020 2020 HOH HOH A . N 6 HOH 21 2021 2021 HOH HOH A . N 6 HOH 22 2022 2022 HOH HOH A . N 6 HOH 23 2023 2023 HOH HOH A . N 6 HOH 24 2024 2024 HOH HOH A . N 6 HOH 25 2025 2025 HOH HOH A . N 6 HOH 26 2026 2026 HOH HOH A . N 6 HOH 27 2027 2027 HOH HOH A . N 6 HOH 28 2028 2028 HOH HOH A . N 6 HOH 29 2029 2029 HOH HOH A . N 6 HOH 30 2030 2030 HOH HOH A . N 6 HOH 31 2031 2031 HOH HOH A . N 6 HOH 32 2032 2032 HOH HOH A . N 6 HOH 33 2033 2033 HOH HOH A . N 6 HOH 34 2034 2034 HOH HOH A . N 6 HOH 35 2035 2035 HOH HOH A . N 6 HOH 36 2036 2036 HOH HOH A . N 6 HOH 37 2037 2037 HOH HOH A . N 6 HOH 38 2038 2038 HOH HOH A . N 6 HOH 39 2039 2039 HOH HOH A . N 6 HOH 40 2040 2040 HOH HOH A . N 6 HOH 41 2041 2041 HOH HOH A . N 6 HOH 42 2042 2042 HOH HOH A . N 6 HOH 43 2043 2043 HOH HOH A . N 6 HOH 44 2044 2044 HOH HOH A . N 6 HOH 45 2045 2045 HOH HOH A . N 6 HOH 46 2046 2046 HOH HOH A . N 6 HOH 47 2047 2047 HOH HOH A . N 6 HOH 48 2048 2048 HOH HOH A . N 6 HOH 49 2049 2049 HOH HOH A . N 6 HOH 50 2050 2050 HOH HOH A . N 6 HOH 51 2051 2051 HOH HOH A . N 6 HOH 52 2052 2052 HOH HOH A . N 6 HOH 53 2053 2053 HOH HOH A . N 6 HOH 54 2054 2054 HOH HOH A . N 6 HOH 55 2055 2055 HOH HOH A . N 6 HOH 56 2056 2056 HOH HOH A . N 6 HOH 57 2057 2057 HOH HOH A . N 6 HOH 58 2058 2058 HOH HOH A . N 6 HOH 59 2059 2059 HOH HOH A . N 6 HOH 60 2060 2060 HOH HOH A . N 6 HOH 61 2061 2061 HOH HOH A . N 6 HOH 62 2062 2062 HOH HOH A . N 6 HOH 63 2063 2063 HOH HOH A . N 6 HOH 64 2064 2064 HOH HOH A . N 6 HOH 65 2065 2065 HOH HOH A . N 6 HOH 66 2066 2066 HOH HOH A . N 6 HOH 67 2067 2067 HOH HOH A . N 6 HOH 68 2068 2068 HOH HOH A . N 6 HOH 69 2069 2069 HOH HOH A . N 6 HOH 70 2070 2070 HOH HOH A . N 6 HOH 71 2071 2071 HOH HOH A . N 6 HOH 72 2072 2072 HOH HOH A . N 6 HOH 73 2073 2073 HOH HOH A . N 6 HOH 74 2074 2074 HOH HOH A . N 6 HOH 75 2075 2075 HOH HOH A . N 6 HOH 76 2076 2076 HOH HOH A . N 6 HOH 77 2077 2077 HOH HOH A . N 6 HOH 78 2078 2078 HOH HOH A . N 6 HOH 79 2079 2079 HOH HOH A . N 6 HOH 80 2080 2080 HOH HOH A . N 6 HOH 81 2081 2081 HOH HOH A . N 6 HOH 82 2082 2082 HOH HOH A . N 6 HOH 83 2083 2083 HOH HOH A . N 6 HOH 84 2084 2084 HOH HOH A . N 6 HOH 85 2085 2085 HOH HOH A . N 6 HOH 86 2086 2086 HOH HOH A . N 6 HOH 87 2087 2087 HOH HOH A . N 6 HOH 88 2088 2088 HOH HOH A . N 6 HOH 89 2089 2089 HOH HOH A . N 6 HOH 90 2090 2090 HOH HOH A . N 6 HOH 91 2091 2091 HOH HOH A . N 6 HOH 92 2092 2092 HOH HOH A . N 6 HOH 93 2093 2093 HOH HOH A . N 6 HOH 94 2094 2094 HOH HOH A . N 6 HOH 95 2095 2095 HOH HOH A . N 6 HOH 96 2096 2096 HOH HOH A . N 6 HOH 97 2097 2097 HOH HOH A . N 6 HOH 98 2098 2098 HOH HOH A . N 6 HOH 99 2099 2099 HOH HOH A . N 6 HOH 100 2100 2100 HOH HOH A . N 6 HOH 101 2101 2101 HOH HOH A . N 6 HOH 102 2102 2102 HOH HOH A . N 6 HOH 103 2103 2103 HOH HOH A . N 6 HOH 104 2104 2104 HOH HOH A . N 6 HOH 105 2105 2105 HOH HOH A . N 6 HOH 106 2106 2106 HOH HOH A . N 6 HOH 107 2107 2107 HOH HOH A . N 6 HOH 108 2108 2108 HOH HOH A . N 6 HOH 109 2109 2109 HOH HOH A . N 6 HOH 110 2110 2110 HOH HOH A . N 6 HOH 111 2111 2111 HOH HOH A . N 6 HOH 112 2112 2112 HOH HOH A . N 6 HOH 113 2113 2113 HOH HOH A . N 6 HOH 114 2114 2114 HOH HOH A . N 6 HOH 115 2115 2115 HOH HOH A . N 6 HOH 116 2116 2116 HOH HOH A . N 6 HOH 117 2117 2117 HOH HOH A . N 6 HOH 118 2118 2118 HOH HOH A . N 6 HOH 119 2119 2119 HOH HOH A . N 6 HOH 120 2120 2120 HOH HOH A . N 6 HOH 121 2121 2121 HOH HOH A . N 6 HOH 122 2122 2122 HOH HOH A . N 6 HOH 123 2123 2123 HOH HOH A . N 6 HOH 124 2124 2124 HOH HOH A . N 6 HOH 125 2125 2125 HOH HOH A . N 6 HOH 126 2126 2126 HOH HOH A . N 6 HOH 127 2127 2127 HOH HOH A . N 6 HOH 128 2128 2128 HOH HOH A . N 6 HOH 129 2129 2129 HOH HOH A . N 6 HOH 130 2130 2130 HOH HOH A . N 6 HOH 131 2131 2131 HOH HOH A . N 6 HOH 132 2132 2132 HOH HOH A . N 6 HOH 133 2133 2133 HOH HOH A . N 6 HOH 134 2134 2134 HOH HOH A . N 6 HOH 135 2135 2135 HOH HOH A . N 6 HOH 136 2136 2136 HOH HOH A . N 6 HOH 137 2137 2137 HOH HOH A . N 6 HOH 138 2138 2138 HOH HOH A . N 6 HOH 139 2139 2139 HOH HOH A . N 6 HOH 140 2140 2140 HOH HOH A . N 6 HOH 141 2141 2141 HOH HOH A . N 6 HOH 142 2142 2142 HOH HOH A . N 6 HOH 143 2143 2143 HOH HOH A . N 6 HOH 144 2144 2144 HOH HOH A . N 6 HOH 145 2145 2145 HOH HOH A . N 6 HOH 146 2146 2146 HOH HOH A . N 6 HOH 147 2147 2147 HOH HOH A . N 6 HOH 148 2148 2148 HOH HOH A . N 6 HOH 149 2149 2149 HOH HOH A . N 6 HOH 150 2150 2150 HOH HOH A . N 6 HOH 151 2151 2151 HOH HOH A . N 6 HOH 152 2152 2152 HOH HOH A . N 6 HOH 153 2153 2153 HOH HOH A . N 6 HOH 154 2154 2154 HOH HOH A . N 6 HOH 155 2155 2155 HOH HOH A . N 6 HOH 156 2156 2156 HOH HOH A . N 6 HOH 157 2157 2157 HOH HOH A . N 6 HOH 158 2158 2158 HOH HOH A . N 6 HOH 159 2159 2159 HOH HOH A . N 6 HOH 160 2160 2160 HOH HOH A . N 6 HOH 161 2161 2161 HOH HOH A . N 6 HOH 162 2162 2162 HOH HOH A . N 6 HOH 163 2163 2163 HOH HOH A . N 6 HOH 164 2164 2164 HOH HOH A . N 6 HOH 165 2165 2165 HOH HOH A . N 6 HOH 166 2166 2166 HOH HOH A . N 6 HOH 167 2167 2167 HOH HOH A . N 6 HOH 168 2168 2168 HOH HOH A . N 6 HOH 169 2169 2169 HOH HOH A . N 6 HOH 170 2170 2170 HOH HOH A . N 6 HOH 171 2171 2171 HOH HOH A . N 6 HOH 172 2172 2172 HOH HOH A . N 6 HOH 173 2173 2173 HOH HOH A . N 6 HOH 174 2174 2174 HOH HOH A . N 6 HOH 175 2175 2175 HOH HOH A . N 6 HOH 176 2176 2176 HOH HOH A . N 6 HOH 177 2177 2177 HOH HOH A . N 6 HOH 178 2178 2178 HOH HOH A . N 6 HOH 179 2179 2179 HOH HOH A . N 6 HOH 180 2180 2180 HOH HOH A . N 6 HOH 181 2181 2181 HOH HOH A . N 6 HOH 182 2182 2182 HOH HOH A . N 6 HOH 183 2183 2183 HOH HOH A . N 6 HOH 184 2184 2184 HOH HOH A . N 6 HOH 185 2185 2185 HOH HOH A . N 6 HOH 186 2186 2186 HOH HOH A . N 6 HOH 187 2187 2187 HOH HOH A . N 6 HOH 188 2188 2188 HOH HOH A . N 6 HOH 189 2189 2189 HOH HOH A . N 6 HOH 190 2190 2190 HOH HOH A . N 6 HOH 191 2191 2191 HOH HOH A . N 6 HOH 192 2192 2192 HOH HOH A . N 6 HOH 193 2193 2193 HOH HOH A . N 6 HOH 194 2194 2194 HOH HOH A . N 6 HOH 195 2195 2195 HOH HOH A . N 6 HOH 196 2196 2196 HOH HOH A . N 6 HOH 197 2197 2197 HOH HOH A . N 6 HOH 198 2198 2198 HOH HOH A . N 6 HOH 199 2199 2199 HOH HOH A . N 6 HOH 200 2200 2200 HOH HOH A . N 6 HOH 201 2201 2201 HOH HOH A . N 6 HOH 202 2202 2202 HOH HOH A . N 6 HOH 203 2203 2203 HOH HOH A . N 6 HOH 204 2204 2204 HOH HOH A . N 6 HOH 205 2205 2205 HOH HOH A . N 6 HOH 206 2206 2206 HOH HOH A . N 6 HOH 207 2207 2207 HOH HOH A . N 6 HOH 208 2208 2208 HOH HOH A . N 6 HOH 209 2209 2209 HOH HOH A . N 6 HOH 210 2210 2210 HOH HOH A . N 6 HOH 211 2211 2211 HOH HOH A . N 6 HOH 212 2212 2212 HOH HOH A . N 6 HOH 213 2213 2213 HOH HOH A . N 6 HOH 214 2214 2214 HOH HOH A . N 6 HOH 215 2215 2215 HOH HOH A . N 6 HOH 216 2216 2216 HOH HOH A . N 6 HOH 217 2217 2217 HOH HOH A . N 6 HOH 218 2218 2218 HOH HOH A . N 6 HOH 219 2219 2219 HOH HOH A . N 6 HOH 220 2220 2220 HOH HOH A . N 6 HOH 221 2221 2221 HOH HOH A . N 6 HOH 222 2222 2222 HOH HOH A . N 6 HOH 223 2223 2223 HOH HOH A . N 6 HOH 224 2224 2224 HOH HOH A . N 6 HOH 225 2225 2225 HOH HOH A . N 6 HOH 226 2226 2226 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A C 80 ? OP1 ? A C 66 OP1 2 1 Y 1 A C 80 ? "C5'" ? A C 66 "C5'" 3 1 Y 1 A C 80 ? "C4'" ? A C 66 "C4'" 4 1 Y 1 A C 80 ? "O4'" ? A C 66 "O4'" 5 1 Y 1 A C 80 ? "C3'" ? A C 66 "C3'" 6 1 Y 1 A C 80 ? "O3'" ? A C 66 "O3'" 7 1 Y 1 A C 80 ? "C2'" ? A C 66 "C2'" 8 1 Y 1 A C 80 ? "O2'" ? A C 66 "O2'" 9 1 Y 1 A C 80 ? "C1'" ? A C 66 "C1'" 10 1 Y 1 A C 80 ? N1 ? A C 66 N1 11 1 Y 1 A C 80 ? C2 ? A C 66 C2 12 1 Y 1 A C 80 ? O2 ? A C 66 O2 13 1 Y 1 A C 80 ? N3 ? A C 66 N3 14 1 Y 1 A C 80 ? C4 ? A C 66 C4 15 1 Y 1 A C 80 ? N4 ? A C 66 N4 16 1 Y 1 A C 80 ? C5 ? A C 66 C5 17 1 Y 1 A C 80 ? C6 ? A C 66 C6 18 1 N 0 A NCO 1085 ? N2 ? F NCO ? N2 19 1 N 0 A NCO 1086 ? N1 ? G NCO ? N1 20 1 N 0 A NCO 1086 ? N2 ? G NCO ? N2 21 1 N 0 A NCO 1086 ? N5 ? G NCO ? N5 22 1 N 0 A NCO 1086 ? N6 ? G NCO ? N6 23 1 N 0 A NCO 1087 ? N1 ? H NCO ? N1 24 1 N 0 A NCO 1087 ? N2 ? H NCO ? N2 25 1 N 0 A NCO 1087 ? N6 ? H NCO ? N6 26 1 N 0 A NCO 1088 ? N1 ? I NCO ? N1 27 1 N 0 A NCO 1088 ? N2 ? I NCO ? N2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.5.0109 ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? # _cell.entry_id 2XO1 _cell.length_a 132.762 _cell.length_b 35.180 _cell.length_c 41.736 _cell.angle_alpha 90.00 _cell.angle_beta 90.51 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XO1 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 2XO1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.8 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10MM K-HEPES PH 7.5, 20% PEG 3000, 12MM COHEX, 440MM AMMONIUM ACETATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-05-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.9763 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XO1 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 66.38 _reflns.d_resolution_high 1.60 _reflns.number_obs 25098 _reflns.number_all ? _reflns.percent_possible_obs 96.5 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.60 _reflns.B_iso_Wilson_estimate 0.0 _reflns.pdbx_redundancy 2.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XO1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 23747 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 66.38 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 95.50 _refine.ls_R_factor_obs 0.19554 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19468 _refine.ls_R_factor_R_free 0.21075 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1268 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 23.164 _refine.aniso_B[1][1] 1.02 _refine.aniso_B[2][2] -0.92 _refine.aniso_B[3][3] -0.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.50 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY, RESIDUES 15, 80, 81 DISORDERED AND NOT MODELED.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.099 _refine.pdbx_overall_ESU_R_Free 0.091 _refine.overall_SU_ML 0.060 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.705 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1364 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 226 _refine_hist.number_atoms_total 1657 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 66.38 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.021 ? 1571 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.508 3.000 ? 2455 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.067 0.200 ? 320 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 671 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.507 1.500 ? 3 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.802 2.000 ? 2 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.266 3.000 ? 1568 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.817 4.500 ? 2453 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.591 _refine_ls_shell.d_res_low 1.633 _refine_ls_shell.number_reflns_R_work 1484 _refine_ls_shell.R_factor_R_work 0.254 _refine_ls_shell.percent_reflns_obs 81.17 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 2XO1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2XO1 _struct.title 'xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XO1 _struct_keywords.pdbx_keywords RNA _struct_keywords.text RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2XO1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 2XO1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XO1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2XO1 _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? L K . K ? ? ? 1_555 N HOH . O ? ? A K 1091 A HOH 2097 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc2 metalc ? ? L K . K ? ? ? 1_555 N HOH . O ? ? A K 1091 A HOH 2126 1_555 ? ? ? ? ? ? ? 2.440 ? ? metalc3 metalc ? ? L K . K ? ? ? 1_555 N HOH . O ? ? A K 1091 A HOH 2128 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc4 metalc ? ? M K . K ? ? ? 1_555 N HOH . O ? ? A K 1092 A HOH 2177 4_445 ? ? ? ? ? ? ? 2.239 ? ? hydrog1 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog15 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog16 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A A 30 N1 ? ? A C 26 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog34 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog35 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N2 ? ? A U 34 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog36 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog37 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog38 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog39 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog40 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog47 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog48 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog52 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog53 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? N HOH . ? A HOH 2097 ? 1_555 K ? L K . ? A K 1091 ? 1_555 O ? N HOH . ? A HOH 2126 ? 1_555 88.4 ? 2 O ? N HOH . ? A HOH 2097 ? 1_555 K ? L K . ? A K 1091 ? 1_555 O ? N HOH . ? A HOH 2128 ? 1_555 83.0 ? 3 O ? N HOH . ? A HOH 2126 ? 1_555 K ? L K . ? A K 1091 ? 1_555 O ? N HOH . ? A HOH 2128 ? 1_555 101.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A N6M 1081 ? 8 'BINDING SITE FOR RESIDUE N6M A 1081' AC2 Software A NCO 1082 ? 10 'BINDING SITE FOR RESIDUE NCO A 1082' AC3 Software A NCO 1083 ? 11 'BINDING SITE FOR RESIDUE NCO A 1083' AC4 Software A NCO 1084 ? 11 'BINDING SITE FOR RESIDUE NCO A 1084' AC5 Software A NCO 1085 ? 8 'BINDING SITE FOR RESIDUE NCO A 1085' AC6 Software A NCO 1086 ? 6 'BINDING SITE FOR RESIDUE NCO A 1086' AC7 Software A NCO 1087 ? 1 'BINDING SITE FOR RESIDUE NCO A 1087' AC8 Software A NCO 1088 ? 5 'BINDING SITE FOR RESIDUE NCO A 1088' AC9 Software A ACT 1089 ? 7 'BINDING SITE FOR RESIDUE ACT A 1089' BC1 Software A K 1091 ? 3 'BINDING SITE FOR RESIDUE K A 1091' BC2 Software A K 1092 ? 1 'BINDING SITE FOR RESIDUE K A 1092' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 A A 7 ? A A 21 . ? 1_555 ? 2 AC1 8 U A 8 ? U A 22 . ? 1_555 ? 3 AC1 8 U A 33 ? U A 47 . ? 1_555 ? 4 AC1 8 U A 37 ? U A 51 . ? 1_555 ? 5 AC1 8 A A 38 ? A A 52 . ? 1_555 ? 6 AC1 8 A A 59 ? A A 73 . ? 1_555 ? 7 AC1 8 U A 60 ? U A 74 . ? 1_555 ? 8 AC1 8 U A 61 ? U A 75 . ? 1_555 ? 9 AC2 10 G A 15 ? G A 29 . ? 1_555 ? 10 AC2 10 U A 16 ? U A 30 . ? 1_555 ? 11 AC2 10 A A 52 ? A A 66 . ? 4_455 ? 12 AC2 10 U A 53 ? U A 67 . ? 4_455 ? 13 AC2 10 HOH N . ? HOH A 2041 . ? 4_455 ? 14 AC2 10 HOH N . ? HOH A 2183 . ? 4_455 ? 15 AC2 10 HOH N . ? HOH A 2187 . ? 4_455 ? 16 AC2 10 HOH N . ? HOH A 2192 . ? 1_565 ? 17 AC2 10 HOH N . ? HOH A 2193 . ? 1_565 ? 18 AC2 10 HOH N . ? HOH A 2216 . ? 1_555 ? 19 AC3 11 C A 25 ? C A 39 . ? 1_555 ? 20 AC3 11 G A 41 ? G A 55 . ? 1_555 ? 21 AC3 11 G A 42 ? G A 56 . ? 1_555 ? 22 AC3 11 G A 43 ? G A 57 . ? 1_555 ? 23 AC3 11 G A 54 ? G A 68 . ? 1_555 ? 24 AC3 11 U A 55 ? U A 69 . ? 1_555 ? 25 AC3 11 HOH N . ? HOH A 2132 . ? 1_555 ? 26 AC3 11 HOH N . ? HOH A 2138 . ? 1_555 ? 27 AC3 11 HOH N . ? HOH A 2184 . ? 1_555 ? 28 AC3 11 HOH N . ? HOH A 2217 . ? 1_555 ? 29 AC3 11 HOH N . ? HOH A 2218 . ? 1_555 ? 30 AC4 11 U A 16 ? U A 30 . ? 1_555 ? 31 AC4 11 G A 17 ? G A 31 . ? 1_555 ? 32 AC4 11 G A 18 ? G A 32 . ? 1_555 ? 33 AC4 11 A A 51 ? A A 65 . ? 1_555 ? 34 AC4 11 A A 52 ? A A 66 . ? 1_555 ? 35 AC4 11 HOH N . ? HOH A 2052 . ? 1_555 ? 36 AC4 11 HOH N . ? HOH A 2054 . ? 1_555 ? 37 AC4 11 HOH N . ? HOH A 2058 . ? 1_555 ? 38 AC4 11 HOH N . ? HOH A 2179 . ? 1_555 ? 39 AC4 11 HOH N . ? HOH A 2180 . ? 1_555 ? 40 AC4 11 HOH N . ? HOH A 2219 . ? 1_555 ? 41 AC5 8 G A 24 ? G A 38 . ? 4_444 ? 42 AC5 8 C A 25 ? C A 39 . ? 4_444 ? 43 AC5 8 G A 42 ? G A 56 . ? 4_444 ? 44 AC5 8 G A 43 ? G A 57 . ? 1_555 ? 45 AC5 8 HOH N . ? HOH A 2086 . ? 4_444 ? 46 AC5 8 HOH N . ? HOH A 2088 . ? 4_444 ? 47 AC5 8 HOH N . ? HOH A 2131 . ? 4_444 ? 48 AC5 8 HOH N . ? HOH A 2221 . ? 1_555 ? 49 AC6 6 U A 22 ? U A 36 . ? 4_444 ? 50 AC6 6 G A 28 ? G A 42 . ? 1_545 ? 51 AC6 6 C A 29 ? C A 43 . ? 1_545 ? 52 AC6 6 G A 58 ? G A 72 . ? 1_555 ? 53 AC6 6 A A 59 ? A A 73 . ? 1_555 ? 54 AC6 6 HOH N . ? HOH A 2103 . ? 1_545 ? 55 AC7 1 C A 57 ? C A 71 . ? 1_555 ? 56 AC8 5 G A 23 ? G A 37 . ? 1_555 ? 57 AC8 5 G A 24 ? G A 38 . ? 1_555 ? 58 AC8 5 HOH N . ? HOH A 2156 . ? 1_555 ? 59 AC8 5 HOH N . ? HOH A 2225 . ? 1_555 ? 60 AC8 5 HOH N . ? HOH A 2226 . ? 1_555 ? 61 AC9 7 G A 18 ? G A 32 . ? 1_555 ? 62 AC9 7 A A 19 ? A A 33 . ? 1_555 ? 63 AC9 7 G A 24 ? G A 38 . ? 1_555 ? 64 AC9 7 C A 25 ? C A 39 . ? 1_555 ? 65 AC9 7 A A 52 ? A A 66 . ? 1_555 ? 66 AC9 7 U A 53 ? U A 67 . ? 1_555 ? 67 AC9 7 HOH N . ? HOH A 2180 . ? 1_555 ? 68 BC1 3 HOH N . ? HOH A 2097 . ? 1_555 ? 69 BC1 3 HOH N . ? HOH A 2126 . ? 1_555 ? 70 BC1 3 HOH N . ? HOH A 2128 . ? 1_555 ? 71 BC2 1 HOH N . ? HOH A 2177 . ? 4_445 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2087 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2140 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_454 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A C 28 ? ? "C5'" A C 28 ? ? "C4'" A C 28 ? ? 102.57 109.40 -6.83 0.80 N 2 1 N1 A U 34 ? ? "C1'" A U 34 ? ? "C2'" A U 34 ? ? 105.04 112.00 -6.96 1.10 N # _pdbx_entry_details.entry_id 2XO1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'RESIDUE 74 C WAS ENGINEERED TO U.' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 15 ? A G 1 2 1 Y 1 A C 81 ? A C 67 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 C OP3 O N N 45 C P P N N 46 C OP1 O N N 47 C OP2 O N N 48 C "O5'" O N N 49 C "C5'" C N N 50 C "C4'" C N R 51 C "O4'" O N N 52 C "C3'" C N S 53 C "O3'" O N N 54 C "C2'" C N R 55 C "O2'" O N N 56 C "C1'" C N R 57 C N1 N N N 58 C C2 C N N 59 C O2 O N N 60 C N3 N N N 61 C C4 C N N 62 C N4 N N N 63 C C5 C N N 64 C C6 C N N 65 C HOP3 H N N 66 C HOP2 H N N 67 C "H5'" H N N 68 C "H5''" H N N 69 C "H4'" H N N 70 C "H3'" H N N 71 C "HO3'" H N N 72 C "H2'" H N N 73 C "HO2'" H N N 74 C "H1'" H N N 75 C H41 H N N 76 C H42 H N N 77 C H5 H N N 78 C H6 H N N 79 G OP3 O N N 80 G P P N N 81 G OP1 O N N 82 G OP2 O N N 83 G "O5'" O N N 84 G "C5'" C N N 85 G "C4'" C N R 86 G "O4'" O N N 87 G "C3'" C N S 88 G "O3'" O N N 89 G "C2'" C N R 90 G "O2'" O N N 91 G "C1'" C N R 92 G N9 N Y N 93 G C8 C Y N 94 G N7 N Y N 95 G C5 C Y N 96 G C6 C N N 97 G O6 O N N 98 G N1 N N N 99 G C2 C N N 100 G N2 N N N 101 G N3 N N N 102 G C4 C Y N 103 G HOP3 H N N 104 G HOP2 H N N 105 G "H5'" H N N 106 G "H5''" H N N 107 G "H4'" H N N 108 G "H3'" H N N 109 G "HO3'" H N N 110 G "H2'" H N N 111 G "HO2'" H N N 112 G "H1'" H N N 113 G H8 H N N 114 G H1 H N N 115 G H21 H N N 116 G H22 H N N 117 HOH O O N N 118 HOH H1 H N N 119 HOH H2 H N N 120 K K K N N 121 N6M C6 C Y N 122 N6M C5 C Y N 123 N6M C4 C Y N 124 N6M C2 C Y N 125 N6M C8 C Y N 126 N6M C11 C N N 127 N6M N6 N N N 128 N6M N1 N Y N 129 N6M N3 N Y N 130 N6M N9 N Y N 131 N6M N7 N Y N 132 N6M H9 H N N 133 N6M H8 H N N 134 N6M H6 H N N 135 N6M H111 H N N 136 N6M H112 H N N 137 N6M H113 H N N 138 N6M H2 H N N 139 NCO CO CO N N 140 NCO N1 N N N 141 NCO N2 N N N 142 NCO N3 N N N 143 NCO N4 N N N 144 NCO N5 N N N 145 NCO N6 N N N 146 NCO HN11 H N N 147 NCO HN12 H N N 148 NCO HN13 H N N 149 NCO HN21 H N N 150 NCO HN22 H N N 151 NCO HN23 H N N 152 NCO HN31 H N N 153 NCO HN32 H N N 154 NCO HN33 H N N 155 NCO HN41 H N N 156 NCO HN42 H N N 157 NCO HN43 H N N 158 NCO HN51 H N N 159 NCO HN52 H N N 160 NCO HN53 H N N 161 NCO HN61 H N N 162 NCO HN62 H N N 163 NCO HN63 H N N 164 U OP3 O N N 165 U P P N N 166 U OP1 O N N 167 U OP2 O N N 168 U "O5'" O N N 169 U "C5'" C N N 170 U "C4'" C N R 171 U "O4'" O N N 172 U "C3'" C N S 173 U "O3'" O N N 174 U "C2'" C N R 175 U "O2'" O N N 176 U "C1'" C N R 177 U N1 N N N 178 U C2 C N N 179 U O2 O N N 180 U N3 N N N 181 U C4 C N N 182 U O4 O N N 183 U C5 C N N 184 U C6 C N N 185 U HOP3 H N N 186 U HOP2 H N N 187 U "H5'" H N N 188 U "H5''" H N N 189 U "H4'" H N N 190 U "H3'" H N N 191 U "HO3'" H N N 192 U "H2'" H N N 193 U "HO2'" H N N 194 U "H1'" H N N 195 U H3 H N N 196 U H5 H N N 197 U H6 H N N 198 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 C OP3 P sing N N 46 C OP3 HOP3 sing N N 47 C P OP1 doub N N 48 C P OP2 sing N N 49 C P "O5'" sing N N 50 C OP2 HOP2 sing N N 51 C "O5'" "C5'" sing N N 52 C "C5'" "C4'" sing N N 53 C "C5'" "H5'" sing N N 54 C "C5'" "H5''" sing N N 55 C "C4'" "O4'" sing N N 56 C "C4'" "C3'" sing N N 57 C "C4'" "H4'" sing N N 58 C "O4'" "C1'" sing N N 59 C "C3'" "O3'" sing N N 60 C "C3'" "C2'" sing N N 61 C "C3'" "H3'" sing N N 62 C "O3'" "HO3'" sing N N 63 C "C2'" "O2'" sing N N 64 C "C2'" "C1'" sing N N 65 C "C2'" "H2'" sing N N 66 C "O2'" "HO2'" sing N N 67 C "C1'" N1 sing N N 68 C "C1'" "H1'" sing N N 69 C N1 C2 sing N N 70 C N1 C6 sing N N 71 C C2 O2 doub N N 72 C C2 N3 sing N N 73 C N3 C4 doub N N 74 C C4 N4 sing N N 75 C C4 C5 sing N N 76 C N4 H41 sing N N 77 C N4 H42 sing N N 78 C C5 C6 doub N N 79 C C5 H5 sing N N 80 C C6 H6 sing N N 81 G OP3 P sing N N 82 G OP3 HOP3 sing N N 83 G P OP1 doub N N 84 G P OP2 sing N N 85 G P "O5'" sing N N 86 G OP2 HOP2 sing N N 87 G "O5'" "C5'" sing N N 88 G "C5'" "C4'" sing N N 89 G "C5'" "H5'" sing N N 90 G "C5'" "H5''" sing N N 91 G "C4'" "O4'" sing N N 92 G "C4'" "C3'" sing N N 93 G "C4'" "H4'" sing N N 94 G "O4'" "C1'" sing N N 95 G "C3'" "O3'" sing N N 96 G "C3'" "C2'" sing N N 97 G "C3'" "H3'" sing N N 98 G "O3'" "HO3'" sing N N 99 G "C2'" "O2'" sing N N 100 G "C2'" "C1'" sing N N 101 G "C2'" "H2'" sing N N 102 G "O2'" "HO2'" sing N N 103 G "C1'" N9 sing N N 104 G "C1'" "H1'" sing N N 105 G N9 C8 sing Y N 106 G N9 C4 sing Y N 107 G C8 N7 doub Y N 108 G C8 H8 sing N N 109 G N7 C5 sing Y N 110 G C5 C6 sing N N 111 G C5 C4 doub Y N 112 G C6 O6 doub N N 113 G C6 N1 sing N N 114 G N1 C2 sing N N 115 G N1 H1 sing N N 116 G C2 N2 sing N N 117 G C2 N3 doub N N 118 G N2 H21 sing N N 119 G N2 H22 sing N N 120 G N3 C4 sing N N 121 HOH O H1 sing N N 122 HOH O H2 sing N N 123 N6M N9 C8 sing Y N 124 N6M N9 C4 sing Y N 125 N6M C8 N7 doub Y N 126 N6M N7 C5 sing Y N 127 N6M C5 C6 sing Y N 128 N6M C5 C4 doub Y N 129 N6M C6 N6 sing N N 130 N6M C6 N1 doub Y N 131 N6M N1 C2 sing Y N 132 N6M C2 N3 doub Y N 133 N6M N3 C4 sing Y N 134 N6M N9 H9 sing N N 135 N6M C8 H8 sing N N 136 N6M N6 H6 sing N N 137 N6M N6 C11 sing N N 138 N6M C11 H111 sing N N 139 N6M C11 H112 sing N N 140 N6M C11 H113 sing N N 141 N6M C2 H2 sing N N 142 NCO CO N1 sing N N 143 NCO CO N2 sing N N 144 NCO CO N3 sing N N 145 NCO CO N4 sing N N 146 NCO CO N5 sing N N 147 NCO CO N6 sing N N 148 NCO N1 HN11 sing N N 149 NCO N1 HN12 sing N N 150 NCO N1 HN13 sing N N 151 NCO N2 HN21 sing N N 152 NCO N2 HN22 sing N N 153 NCO N2 HN23 sing N N 154 NCO N3 HN31 sing N N 155 NCO N3 HN32 sing N N 156 NCO N3 HN33 sing N N 157 NCO N4 HN41 sing N N 158 NCO N4 HN42 sing N N 159 NCO N4 HN43 sing N N 160 NCO N5 HN51 sing N N 161 NCO N5 HN52 sing N N 162 NCO N5 HN53 sing N N 163 NCO N6 HN61 sing N N 164 NCO N6 HN62 sing N N 165 NCO N6 HN63 sing N N 166 U OP3 P sing N N 167 U OP3 HOP3 sing N N 168 U P OP1 doub N N 169 U P OP2 sing N N 170 U P "O5'" sing N N 171 U OP2 HOP2 sing N N 172 U "O5'" "C5'" sing N N 173 U "C5'" "C4'" sing N N 174 U "C5'" "H5'" sing N N 175 U "C5'" "H5''" sing N N 176 U "C4'" "O4'" sing N N 177 U "C4'" "C3'" sing N N 178 U "C4'" "H4'" sing N N 179 U "O4'" "C1'" sing N N 180 U "C3'" "O3'" sing N N 181 U "C3'" "C2'" sing N N 182 U "C3'" "H3'" sing N N 183 U "O3'" "HO3'" sing N N 184 U "C2'" "O2'" sing N N 185 U "C2'" "C1'" sing N N 186 U "C2'" "H2'" sing N N 187 U "O2'" "HO2'" sing N N 188 U "C1'" N1 sing N N 189 U "C1'" "H1'" sing N N 190 U N1 C2 sing N N 191 U N1 C6 sing N N 192 U C2 O2 doub N N 193 U C2 N3 sing N N 194 U N3 C4 sing N N 195 U N3 H3 sing N N 196 U C4 O4 doub N N 197 U C4 C5 sing N N 198 U C5 C6 doub N N 199 U C5 H5 sing N N 200 U C6 H6 sing N N 201 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2XO1 'double helix' 2XO1 'a-form double helix' 2XO1 'mismatched base pair' 2XO1 'internal loop' 2XO1 'triple helix' 2XO1 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 3 1_555 A U 65 1_555 -0.067 -0.173 -0.035 1.020 -19.503 1.785 1 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 -0.120 -0.234 0.129 2.075 -18.899 0.281 2 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 -0.095 -0.137 0.190 -6.384 -13.537 5.683 3 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.170 -0.123 0.142 -9.879 -18.312 6.918 4 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 0.062 -0.144 0.055 -1.736 -9.715 2.872 5 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 33 1_555 A U 37 1_555 3.542 -0.534 0.584 32.483 38.206 -74.630 6 A_U47:U51_A A 47 ? A 51 ? ? ? 1 A U 8 1_555 A A 38 1_555 -0.048 -0.094 -0.255 14.007 -2.644 0.930 7 A_U22:A52_A A 22 ? A 52 ? 20 1 1 A G 32 1_555 A C 39 1_555 -0.110 -0.089 -0.301 -21.728 -3.259 -2.481 8 A_G46:C53_A A 46 ? A 53 ? 19 1 1 A A 31 1_555 A U 11 1_555 0.112 -0.066 0.163 -4.735 -12.188 5.460 9 A_A45:U25_A A 45 ? A 25 ? 20 1 1 A A 30 1_555 A C 12 1_555 1.684 0.173 0.097 2.496 -15.826 9.441 10 A_A44:C26_A A 44 ? A 26 ? ? 1 1 A C 29 1_555 A G 13 1_555 0.242 -0.107 -0.062 9.360 -9.039 0.821 11 A_C43:G27_A A 43 ? A 27 ? 19 1 1 A G 28 1_555 A C 14 1_555 -0.042 -0.087 0.042 -3.306 -5.633 0.559 12 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A C 27 1_555 A G 15 1_555 0.318 -0.205 -0.066 -1.621 -12.422 -1.523 13 A_C41:G29_A A 41 ? A 29 ? 19 1 1 A A 26 1_555 A U 16 1_555 -0.009 -0.099 -0.043 -3.623 -4.735 3.876 14 A_A40:U30_A A 40 ? A 30 ? 20 1 1 A C 25 1_555 A G 17 1_555 0.237 -0.185 0.055 -5.712 -4.919 0.033 15 A_C39:G31_A A 39 ? A 31 ? 19 1 1 A A 21 1_555 A A 50 1_555 -4.177 1.241 0.409 -2.923 2.069 -109.196 16 A_A35:A64_A A 35 ? A 64 ? 5 4 1 A C 47 1_555 A G 23 1_555 0.144 -0.209 0.471 -2.784 -8.275 -4.118 17 A_C61:G37_A A 61 ? A 37 ? 19 1 1 A U 20 1_555 A A 51 1_555 4.247 -2.056 -0.527 -2.999 -7.617 -98.574 18 A_U34:A65_A A 34 ? A 65 ? 24 4 1 A G 24 1_555 A C 46 1_555 -0.033 -0.099 0.504 18.591 -11.656 -1.441 19 A_G38:C60_A A 38 ? A 60 ? 19 1 1 A U 53 1_555 A A 45 1_555 -0.115 -0.097 -0.030 4.831 -11.145 0.595 20 A_U67:A59_A A 67 ? A 59 ? 20 1 1 A G 54 1_555 A C 44 1_555 -0.185 -0.181 0.036 -4.805 -14.657 -0.034 21 A_G68:C58_A A 68 ? A 58 ? 19 1 1 A U 55 1_555 A G 43 1_555 2.328 -0.651 0.113 -1.789 -15.386 -3.139 22 A_U69:G57_A A 69 ? A 57 ? 28 1 1 A C 56 1_555 A G 42 1_555 0.283 -0.205 0.186 -1.548 -14.283 -2.338 23 A_C70:G56_A A 70 ? A 56 ? 19 1 1 A C 57 1_555 A G 41 1_555 0.075 -0.133 0.156 7.895 -10.098 -1.505 24 A_C71:G55_A A 71 ? A 55 ? 19 1 1 A G 58 1_555 A C 40 1_555 -0.125 -0.161 0.001 5.348 -14.144 0.935 25 A_G72:C54_A A 72 ? A 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.696 -1.655 3.166 0.643 7.130 27.882 -4.782 -1.269 2.683 14.496 -1.308 28.769 1 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 0.269 -1.600 3.333 0.561 11.370 32.846 -4.323 -0.370 2.654 19.396 -0.958 34.712 2 AA_C18A19:U77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 0.021 -1.166 3.326 0.640 15.708 31.097 -4.206 0.056 2.472 27.228 -1.110 34.758 3 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.443 -1.354 2.958 2.735 17.155 28.681 -4.634 -0.406 1.902 31.270 -4.985 33.437 4 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A A 7 1_555 A U 61 1_555 A U 33 1_555 A U 37 1_555 2.499 0.417 6.270 -30.019 -162.666 49.270 2.779 -1.732 1.847 -85.502 15.779 166.746 5 AA_A21U47:U51U75_AA A 21 ? A 75 ? A 47 ? A 51 ? 1 A U 33 1_555 A U 37 1_555 A U 8 1_555 A A 38 1_555 0.036 0.891 -3.148 -1.808 -22.660 -4.120 -8.115 0.559 0.311 79.608 -6.350 -23.097 6 AA_U47U22:A52U51_AA A 47 ? A 51 ? A 22 ? A 52 ? 1 A U 8 1_555 A A 38 1_555 A G 32 1_555 A C 39 1_555 1.929 -0.039 -2.482 2.126 -8.970 -42.824 -0.611 2.432 -2.529 12.118 2.872 -43.759 7 AA_U22G46:C53A52_AA A 22 ? A 52 ? A 46 ? A 53 ? 1 A G 32 1_555 A C 39 1_555 A A 31 1_555 A U 11 1_555 -1.963 0.381 -3.523 -14.941 -5.100 -52.518 -0.769 -1.098 -3.859 5.621 -16.467 -54.678 8 AA_G46A45:U25C53_AA A 46 ? A 53 ? A 45 ? A 25 ? 1 A A 31 1_555 A U 11 1_555 A A 30 1_555 A C 12 1_555 -0.455 2.342 -3.194 -2.187 -6.676 -27.040 -6.280 -0.476 -2.580 13.980 -4.579 -27.921 9 AA_A45A44:C26U25_AA A 45 ? A 25 ? A 44 ? A 26 ? 1 A A 30 1_555 A C 12 1_555 A C 29 1_555 A G 13 1_555 -0.392 1.747 -3.409 -1.792 -10.349 -34.478 -4.257 -0.386 -2.802 16.978 -2.940 -35.996 10 AA_A44C43:G27C26_AA A 44 ? A 26 ? A 43 ? A 27 ? 1 A C 29 1_555 A G 13 1_555 A G 28 1_555 A C 14 1_555 0.757 2.356 -2.956 1.551 -3.570 -26.127 -5.978 1.301 -2.655 7.842 3.408 -26.410 11 AA_C43G42:C28G27_AA A 43 ? A 27 ? A 42 ? A 28 ? 1 A G 28 1_555 A C 14 1_555 A C 27 1_555 A G 15 1_555 -0.669 1.844 -3.192 0.073 -8.867 -28.375 -5.260 -1.320 -2.512 17.554 0.144 -29.701 12 AA_G42C41:G29C28_AA A 42 ? A 28 ? A 41 ? A 29 ? 1 A C 27 1_555 A G 15 1_555 A A 26 1_555 A U 16 1_555 0.013 1.239 -3.286 -1.550 -9.658 -32.144 -3.655 0.265 -2.803 16.959 -2.722 -33.562 13 AA_C41A40:U30G29_AA A 41 ? A 29 ? A 40 ? A 30 ? 1 A A 26 1_555 A U 16 1_555 A C 25 1_555 A G 17 1_555 0.750 1.792 -3.170 -1.432 -4.222 -31.322 -4.013 1.622 -2.874 7.771 -2.635 -31.630 14 AA_A40C39:G31U30_AA A 40 ? A 30 ? A 39 ? A 31 ? 1 A A 21 1_555 A A 50 1_555 A C 47 1_555 A G 23 1_555 4.453 0.083 -3.566 -0.621 -6.255 133.303 0.000 -2.420 -3.577 -3.406 0.338 133.378 15 AA_A35C61:G37A64_AA A 35 ? A 64 ? A 61 ? A 37 ? 1 A C 47 1_555 A G 23 1_555 A U 20 1_555 A A 51 1_555 -5.836 -4.614 0.818 -6.532 -21.498 -113.491 2.767 -3.471 0.037 12.784 -3.885 -114.925 16 AA_C61U34:A65G37_AA A 61 ? A 37 ? A 34 ? A 65 ? 1 A G 24 1_555 A C 46 1_555 A U 53 1_555 A A 45 1_555 -2.032 -0.510 3.317 -3.619 7.985 54.093 -1.045 1.987 3.335 8.716 3.950 54.746 17 AA_G38U67:A59C60_AA A 38 ? A 60 ? A 67 ? A 59 ? 1 A U 53 1_555 A A 45 1_555 A G 54 1_555 A C 44 1_555 -0.333 -1.681 3.487 -0.614 6.341 33.436 -3.906 0.468 3.130 10.898 1.055 34.021 18 AA_U67G68:C58A59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A G 54 1_555 A C 44 1_555 A U 55 1_555 A G 43 1_555 -0.409 -1.138 3.167 0.070 1.514 43.696 -1.667 0.556 3.127 2.033 -0.094 43.721 19 AA_G68U69:G57C58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A U 55 1_555 A G 43 1_555 A C 56 1_555 A G 42 1_555 -0.071 -1.540 3.057 3.425 8.342 26.159 -4.972 0.866 2.430 17.772 -7.296 27.644 20 AA_U69C70:G56G57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A C 56 1_555 A G 42 1_555 A C 57 1_555 A G 41 1_555 0.128 -0.628 3.088 -0.196 6.432 30.365 -2.318 -0.275 2.896 12.108 0.369 31.024 21 AA_C70C71:G55G56_AA A 70 ? A 56 ? A 71 ? A 55 ? 1 A C 57 1_555 A G 41 1_555 A G 58 1_555 A C 40 1_555 0.930 -1.698 3.175 0.618 8.688 34.778 -3.900 -1.431 2.702 14.261 -1.014 35.819 22 AA_C71G72:C54G55_AA A 71 ? A 55 ? A 72 ? A 54 ? # _atom_sites.entry_id 2XO1 _atom_sites.fract_transf_matrix[1][1] 0.007532 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000067 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028425 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023961 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO K N O P # loop_