data_2Y1Z # _entry.id 2Y1Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Y1Z pdb_00002y1z 10.2210/pdb2y1z/pdb PDBE EBI-46652 ? ? WWPDB D_1290046652 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ncs_dom_lim 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 5 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 6 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 7 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 8 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 9 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 10 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 11 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' 12 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y1Z _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-12-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2WJ7 unspecified 'HUMAN ALPHAB CRYSTALLIN' PDB 2Y1Y unspecified 'HUMAN ALPHAB CRYSTALLIN ACD(RESIDUES 71-157)' PDB 2Y22 unspecified 'HUMAN ALPHAB-CRYSTALLIN DOMAIN (RESIDUES 67-157)' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clark, A.R.' 1 'Bagneris, C.' 2 'Naylor, C.E.' 3 'Keep, N.H.' 4 'Slingsby, C.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal Structure of R120G Disease Mutant of Human Alphab-Crystallin Domain Dimer Shows Closure of a Groove' J.Mol.Biol. 408 118 ? 2011 JMOBAK UK 0022-2836 0070 ? 21329698 10.1016/J.JMB.2011.02.020 1 'Crystal Structures of Alpha-Crystallin Domain Dimers of Alphab-Crystallin and Hsp20.' J.Mol.Biol. 392 1242 ? 2009 JMOBAK UK 0022-2836 0070 ? 19646995 10.1016/J.JMB.2009.07.069 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clark, A.R.' 1 ? primary 'Naylor, C.E.' 2 ? primary 'Bagneris, C.' 3 ? primary 'Keep, N.H.' 4 ? primary 'Slingsby, C.' 5 ? 1 'Bagneris, C.' 6 ? 1 'Bateman, O.A.' 7 ? 1 'Naylor, C.E.' 8 ? 1 'Cronin, N.' 9 ? 1 'Boelens, W.C.' 10 ? 1 'Keep, N.H.' 11 ? 1 'Slingsby, C.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ALPHA-CRYSTALLIN B CHAIN' 10646.999 2 ? YES 'ALPHA-CRYSTALLIN DOMAIN (ACD), RESIDUES 67-157' ? 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 3 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 water nat water 18.015 14 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ALPHAB-CRYSTALLIN, ALPHA(B)-CRYSTALLIN, HEAT SHOCK PROTEIN BETA-5, HSPB5, RENAL CARCINOMA ANTIGEN NY-REN-27, ROSENTHAL FIBER COMPONENT ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGVL TVNGPRKQVSGPER ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGVL TVNGPRKQVSGPER ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLU n 1 5 MET n 1 6 ARG n 1 7 LEU n 1 8 GLU n 1 9 LYS n 1 10 ASP n 1 11 ARG n 1 12 PHE n 1 13 SER n 1 14 VAL n 1 15 ASN n 1 16 LEU n 1 17 ASP n 1 18 VAL n 1 19 LYS n 1 20 HIS n 1 21 PHE n 1 22 SER n 1 23 PRO n 1 24 GLU n 1 25 GLU n 1 26 LEU n 1 27 LYS n 1 28 VAL n 1 29 LYS n 1 30 VAL n 1 31 LEU n 1 32 GLY n 1 33 ASP n 1 34 VAL n 1 35 ILE n 1 36 GLU n 1 37 VAL n 1 38 HIS n 1 39 GLY n 1 40 LYS n 1 41 HIS n 1 42 GLU n 1 43 GLU n 1 44 ARG n 1 45 GLN n 1 46 ASP n 1 47 GLU n 1 48 HIS n 1 49 GLY n 1 50 PHE n 1 51 ILE n 1 52 SER n 1 53 ARG n 1 54 GLU n 1 55 PHE n 1 56 HIS n 1 57 GLY n 1 58 LYS n 1 59 TYR n 1 60 ARG n 1 61 ILE n 1 62 PRO n 1 63 ALA n 1 64 ASP n 1 65 VAL n 1 66 ASP n 1 67 PRO n 1 68 LEU n 1 69 THR n 1 70 ILE n 1 71 THR n 1 72 SER n 1 73 SER n 1 74 MET n 1 75 SER n 1 76 SER n 1 77 ASP n 1 78 GLY n 1 79 VAL n 1 80 LEU n 1 81 THR n 1 82 VAL n 1 83 ASN n 1 84 GLY n 1 85 PRO n 1 86 ARG n 1 87 LYS n 1 88 GLN n 1 89 VAL n 1 90 SER n 1 91 GLY n 1 92 PRO n 1 93 GLU n 1 94 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector 'PPROEX HT(B)' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 64 ? ? ? A . n A 1 2 ALA 2 65 ? ? ? A . n A 1 3 MET 3 66 ? ? ? A . n A 1 4 GLU 4 67 67 GLU GLU A . n A 1 5 MET 5 68 68 MET MET A . n A 1 6 ARG 6 69 69 ARG ARG A . n A 1 7 LEU 7 70 70 LEU LEU A . n A 1 8 GLU 8 71 71 GLU GLU A . n A 1 9 LYS 9 72 72 LYS LYS A . n A 1 10 ASP 10 73 73 ASP ASP A . n A 1 11 ARG 11 74 74 ARG ARG A . n A 1 12 PHE 12 75 75 PHE PHE A . n A 1 13 SER 13 76 76 SER SER A . n A 1 14 VAL 14 77 77 VAL VAL A . n A 1 15 ASN 15 78 78 ASN ASN A . n A 1 16 LEU 16 79 79 LEU LEU A . n A 1 17 ASP 17 80 80 ASP ASP A . n A 1 18 VAL 18 81 81 VAL VAL A . n A 1 19 LYS 19 82 82 LYS LYS A . n A 1 20 HIS 20 83 83 HIS HIS A . n A 1 21 PHE 21 84 84 PHE PHE A . n A 1 22 SER 22 85 85 SER SER A . n A 1 23 PRO 23 86 86 PRO PRO A . n A 1 24 GLU 24 87 87 GLU GLU A . n A 1 25 GLU 25 88 88 GLU GLU A . n A 1 26 LEU 26 89 89 LEU LEU A . n A 1 27 LYS 27 90 90 LYS LYS A . n A 1 28 VAL 28 91 91 VAL VAL A . n A 1 29 LYS 29 92 92 LYS LYS A . n A 1 30 VAL 30 93 93 VAL VAL A . n A 1 31 LEU 31 94 94 LEU LEU A . n A 1 32 GLY 32 95 95 GLY GLY A . n A 1 33 ASP 33 96 96 ASP ASP A . n A 1 34 VAL 34 97 97 VAL VAL A . n A 1 35 ILE 35 98 98 ILE ILE A . n A 1 36 GLU 36 99 99 GLU GLU A . n A 1 37 VAL 37 100 100 VAL VAL A . n A 1 38 HIS 38 101 101 HIS HIS A . n A 1 39 GLY 39 102 102 GLY GLY A . n A 1 40 LYS 40 103 103 LYS LYS A . n A 1 41 HIS 41 104 104 HIS HIS A . n A 1 42 GLU 42 105 105 GLU GLU A . n A 1 43 GLU 43 106 106 GLU GLU A . n A 1 44 ARG 44 107 107 ARG ARG A . n A 1 45 GLN 45 108 108 GLN GLN A . n A 1 46 ASP 46 109 109 ASP ASP A . n A 1 47 GLU 47 110 110 GLU GLU A . n A 1 48 HIS 48 111 111 HIS HIS A . n A 1 49 GLY 49 112 112 GLY GLY A . n A 1 50 PHE 50 113 113 PHE PHE A . n A 1 51 ILE 51 114 114 ILE ILE A . n A 1 52 SER 52 115 115 SER SER A . n A 1 53 ARG 53 116 116 ARG ARG A . n A 1 54 GLU 54 117 117 GLU GLU A . n A 1 55 PHE 55 118 118 PHE PHE A . n A 1 56 HIS 56 119 119 HIS HIS A . n A 1 57 GLY 57 120 120 GLY GLY A . n A 1 58 LYS 58 121 121 LYS LYS A . n A 1 59 TYR 59 122 122 TYR TYR A . n A 1 60 ARG 60 123 123 ARG ARG A . n A 1 61 ILE 61 124 124 ILE ILE A . n A 1 62 PRO 62 125 125 PRO PRO A . n A 1 63 ALA 63 126 126 ALA ALA A . n A 1 64 ASP 64 127 127 ASP ASP A . n A 1 65 VAL 65 128 128 VAL VAL A . n A 1 66 ASP 66 129 129 ASP ASP A . n A 1 67 PRO 67 130 130 PRO PRO A . n A 1 68 LEU 68 131 131 LEU LEU A . n A 1 69 THR 69 132 132 THR THR A . n A 1 70 ILE 70 133 133 ILE ILE A . n A 1 71 THR 71 134 134 THR THR A . n A 1 72 SER 72 135 135 SER SER A . n A 1 73 SER 73 136 136 SER SER A . n A 1 74 MET 74 137 137 MET MET A . n A 1 75 SER 75 138 138 SER SER A . n A 1 76 SER 76 139 139 SER SER A . n A 1 77 ASP 77 140 140 ASP ASP A . n A 1 78 GLY 78 141 141 GLY GLY A . n A 1 79 VAL 79 142 142 VAL VAL A . n A 1 80 LEU 80 143 143 LEU LEU A . n A 1 81 THR 81 144 144 THR THR A . n A 1 82 VAL 82 145 145 VAL VAL A . n A 1 83 ASN 83 146 146 ASN ASN A . n A 1 84 GLY 84 147 147 GLY GLY A . n A 1 85 PRO 85 148 148 PRO PRO A . n A 1 86 ARG 86 149 149 ARG ARG A . n A 1 87 LYS 87 150 150 LYS LYS A . n A 1 88 GLN 88 151 151 GLN GLN A . n A 1 89 VAL 89 152 ? ? ? A . n A 1 90 SER 90 153 ? ? ? A . n A 1 91 GLY 91 154 ? ? ? A . n A 1 92 PRO 92 155 ? ? ? A . n A 1 93 GLU 93 156 ? ? ? A . n A 1 94 ARG 94 157 ? ? ? A . n B 1 1 GLY 1 64 64 GLY GLY B . n B 1 2 ALA 2 65 65 ALA ALA B . n B 1 3 MET 3 66 66 MET MET B . n B 1 4 GLU 4 67 67 GLU GLU B . n B 1 5 MET 5 68 68 MET MET B . n B 1 6 ARG 6 69 69 ARG ARG B . n B 1 7 LEU 7 70 70 LEU LEU B . n B 1 8 GLU 8 71 71 GLU GLU B . n B 1 9 LYS 9 72 72 LYS LYS B . n B 1 10 ASP 10 73 73 ASP ASP B . n B 1 11 ARG 11 74 74 ARG ARG B . n B 1 12 PHE 12 75 75 PHE PHE B . n B 1 13 SER 13 76 76 SER SER B . n B 1 14 VAL 14 77 77 VAL VAL B . n B 1 15 ASN 15 78 78 ASN ASN B . n B 1 16 LEU 16 79 79 LEU LEU B . n B 1 17 ASP 17 80 80 ASP ASP B . n B 1 18 VAL 18 81 81 VAL VAL B . n B 1 19 LYS 19 82 82 LYS LYS B . n B 1 20 HIS 20 83 83 HIS HIS B . n B 1 21 PHE 21 84 84 PHE PHE B . n B 1 22 SER 22 85 85 SER SER B . n B 1 23 PRO 23 86 86 PRO PRO B . n B 1 24 GLU 24 87 87 GLU GLU B . n B 1 25 GLU 25 88 88 GLU GLU B . n B 1 26 LEU 26 89 89 LEU LEU B . n B 1 27 LYS 27 90 90 LYS LYS B . n B 1 28 VAL 28 91 91 VAL VAL B . n B 1 29 LYS 29 92 92 LYS LYS B . n B 1 30 VAL 30 93 93 VAL VAL B . n B 1 31 LEU 31 94 94 LEU LEU B . n B 1 32 GLY 32 95 95 GLY GLY B . n B 1 33 ASP 33 96 96 ASP ASP B . n B 1 34 VAL 34 97 97 VAL VAL B . n B 1 35 ILE 35 98 98 ILE ILE B . n B 1 36 GLU 36 99 99 GLU GLU B . n B 1 37 VAL 37 100 100 VAL VAL B . n B 1 38 HIS 38 101 101 HIS HIS B . n B 1 39 GLY 39 102 102 GLY GLY B . n B 1 40 LYS 40 103 103 LYS LYS B . n B 1 41 HIS 41 104 104 HIS HIS B . n B 1 42 GLU 42 105 105 GLU GLU B . n B 1 43 GLU 43 106 106 GLU GLU B . n B 1 44 ARG 44 107 107 ARG ARG B . n B 1 45 GLN 45 108 108 GLN GLN B . n B 1 46 ASP 46 109 109 ASP ASP B . n B 1 47 GLU 47 110 110 GLU GLU B . n B 1 48 HIS 48 111 111 HIS HIS B . n B 1 49 GLY 49 112 112 GLY GLY B . n B 1 50 PHE 50 113 113 PHE PHE B . n B 1 51 ILE 51 114 114 ILE ILE B . n B 1 52 SER 52 115 115 SER SER B . n B 1 53 ARG 53 116 116 ARG ARG B . n B 1 54 GLU 54 117 117 GLU GLU B . n B 1 55 PHE 55 118 118 PHE PHE B . n B 1 56 HIS 56 119 119 HIS HIS B . n B 1 57 GLY 57 120 120 GLY GLY B . n B 1 58 LYS 58 121 121 LYS LYS B . n B 1 59 TYR 59 122 122 TYR TYR B . n B 1 60 ARG 60 123 123 ARG ARG B . n B 1 61 ILE 61 124 124 ILE ILE B . n B 1 62 PRO 62 125 125 PRO PRO B . n B 1 63 ALA 63 126 126 ALA ALA B . n B 1 64 ASP 64 127 127 ASP ASP B . n B 1 65 VAL 65 128 128 VAL VAL B . n B 1 66 ASP 66 129 129 ASP ASP B . n B 1 67 PRO 67 130 130 PRO PRO B . n B 1 68 LEU 68 131 131 LEU LEU B . n B 1 69 THR 69 132 132 THR THR B . n B 1 70 ILE 70 133 133 ILE ILE B . n B 1 71 THR 71 134 134 THR THR B . n B 1 72 SER 72 135 135 SER SER B . n B 1 73 SER 73 136 136 SER SER B . n B 1 74 MET 74 137 137 MET MET B . n B 1 75 SER 75 138 138 SER SER B . n B 1 76 SER 76 139 139 SER SER B . n B 1 77 ASP 77 140 140 ASP ASP B . n B 1 78 GLY 78 141 141 GLY GLY B . n B 1 79 VAL 79 142 142 VAL VAL B . n B 1 80 LEU 80 143 143 LEU LEU B . n B 1 81 THR 81 144 144 THR THR B . n B 1 82 VAL 82 145 145 VAL VAL B . n B 1 83 ASN 83 146 146 ASN ASN B . n B 1 84 GLY 84 147 147 GLY GLY B . n B 1 85 PRO 85 148 148 PRO PRO B . n B 1 86 ARG 86 149 149 ARG ARG B . n B 1 87 LYS 87 150 150 LYS LYS B . n B 1 88 GLN 88 151 ? ? ? B . n B 1 89 VAL 89 152 ? ? ? B . n B 1 90 SER 90 153 ? ? ? B . n B 1 91 GLY 91 154 ? ? ? B . n B 1 92 PRO 92 155 ? ? ? B . n B 1 93 GLU 93 156 ? ? ? B . n B 1 94 ARG 94 157 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MRD 1 1152 1152 MRD MRD A . D 3 MPD 1 1153 1153 MPD MPD A . E 2 MRD 1 1151 1151 MRD MRD B . F 2 MRD 1 1152 1152 MRD MRD B . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . H 4 HOH 1 2001 2001 HOH HOH B . H 4 HOH 2 2002 2002 HOH HOH B . H 4 HOH 3 2003 2003 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 67 ? CG ? A GLU 4 CG 2 1 Y 1 A GLU 67 ? CD ? A GLU 4 CD 3 1 Y 1 A GLU 67 ? OE1 ? A GLU 4 OE1 4 1 Y 1 A GLU 67 ? OE2 ? A GLU 4 OE2 5 1 Y 1 A LYS 90 ? CG ? A LYS 27 CG 6 1 Y 1 A LYS 90 ? CD ? A LYS 27 CD 7 1 Y 1 A LYS 90 ? CE ? A LYS 27 CE 8 1 Y 1 A LYS 90 ? NZ ? A LYS 27 NZ 9 1 Y 1 A LYS 92 ? CD ? A LYS 29 CD 10 1 Y 1 A LYS 92 ? CE ? A LYS 29 CE 11 1 Y 1 A LYS 92 ? NZ ? A LYS 29 NZ 12 1 Y 1 A LEU 94 ? CG ? A LEU 31 CG 13 1 Y 1 A LEU 94 ? CD1 ? A LEU 31 CD1 14 1 Y 1 A LEU 94 ? CD2 ? A LEU 31 CD2 15 1 Y 1 A ARG 107 ? CG ? A ARG 44 CG 16 1 Y 1 A ARG 107 ? CD ? A ARG 44 CD 17 1 Y 1 A ARG 107 ? NE ? A ARG 44 NE 18 1 Y 1 A ARG 107 ? CZ ? A ARG 44 CZ 19 1 Y 1 A ARG 107 ? NH1 ? A ARG 44 NH1 20 1 Y 1 A ARG 107 ? NH2 ? A ARG 44 NH2 21 1 Y 1 A LYS 150 ? CD ? A LYS 87 CD 22 1 Y 1 A LYS 150 ? CE ? A LYS 87 CE 23 1 Y 1 A LYS 150 ? NZ ? A LYS 87 NZ 24 1 Y 1 A GLN 151 ? CG ? A GLN 88 CG 25 1 Y 1 A GLN 151 ? CD ? A GLN 88 CD 26 1 Y 1 A GLN 151 ? OE1 ? A GLN 88 OE1 27 1 Y 1 A GLN 151 ? NE2 ? A GLN 88 NE2 28 1 Y 1 B LYS 90 ? CG ? B LYS 27 CG 29 1 Y 1 B LYS 90 ? CD ? B LYS 27 CD 30 1 Y 1 B LYS 90 ? CE ? B LYS 27 CE 31 1 Y 1 B LYS 90 ? NZ ? B LYS 27 NZ 32 1 Y 1 B LYS 92 ? CD ? B LYS 29 CD 33 1 Y 1 B LYS 92 ? CE ? B LYS 29 CE 34 1 Y 1 B LYS 92 ? NZ ? B LYS 29 NZ 35 1 Y 1 B LYS 150 ? CG ? B LYS 87 CG 36 1 Y 1 B LYS 150 ? CD ? B LYS 87 CD 37 1 Y 1 B LYS 150 ? CE ? B LYS 87 CE 38 1 Y 1 B LYS 150 ? NZ ? B LYS 87 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 2Y1Z _cell.length_a 60.730 _cell.length_b 60.730 _cell.length_c 100.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y1Z _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _exptl.entry_id 2Y1Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.6 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PROTEIN AT 16.5 MG/ML IN BUFFER (25 MM TRISHCL, PH 7.5, 25 MM NACL) WAS MIXED 1:1 WITH MOTHER LIQUOR (36% MPD, 0.18M POTASSIUM CHLORIDE) ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-06-24 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator CRYSTAL _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.87 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y1Z _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.60 _reflns.d_resolution_high 2.50 _reflns.number_obs 7582 _reflns.number_all ? _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.40 _reflns.B_iso_Wilson_estimate 43.7 _reflns.pdbx_redundancy 9.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 97.8 _reflns_shell.Rmerge_I_obs 0.54 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.30 _reflns_shell.pdbx_redundancy 9.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y1Z _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6777 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.27 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 96.88 _refine.ls_R_factor_obs 0.18047 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17335 _refine.ls_R_factor_R_free 0.24052 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.4 _refine.ls_number_reflns_R_free 788 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.933 _refine.correlation_coeff_Fo_to_Fc_free 0.892 _refine.B_iso_mean 31.194 _refine.aniso_B[1][1] 6.51 _refine.aniso_B[2][2] 6.51 _refine.aniso_B[3][3] -13.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'HUMAN ALPHA-CRYSTALLIN DOMAIN RESIDUES 71- 157' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.104 _refine.pdbx_overall_ESU_R_Free 0.060 _refine.overall_SU_ML 0.189 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 18.426 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1340 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 1386 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 36.27 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 1416 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.964 1.978 ? 1915 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.338 5.000 ? 176 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.642 23.714 ? 70 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.405 15.000 ? 243 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.055 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.064 0.200 ? 209 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 1068 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.213 1.500 ? 862 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.410 2.000 ? 1395 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.662 3.000 ? 554 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.128 4.500 ? 517 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 495 0.41 5.00 'loose positional' 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 B 495 0.41 5.00 'loose positional' 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 A 495 2.49 50.00 'loose thermal' 1 3 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 B 495 2.49 50.00 'loose thermal' 1 4 'X-RAY DIFFRACTION' ? ? ? ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.499 _refine_ls_shell.d_res_low 2.563 _refine_ls_shell.number_reflns_R_work 469 _refine_ls_shell.R_factor_R_work 0.219 _refine_ls_shell.percent_reflns_obs 93.77 _refine_ls_shell.R_factor_R_free 0.390 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.996000 _struct_ncs_oper.matrix[1][2] -0.088000 _struct_ncs_oper.matrix[1][3] 0.032000 _struct_ncs_oper.matrix[2][1] -0.086000 _struct_ncs_oper.matrix[2][2] 0.994000 _struct_ncs_oper.matrix[2][3] 0.062000 _struct_ncs_oper.matrix[3][1] -0.037000 _struct_ncs_oper.matrix[3][2] 0.059000 _struct_ncs_oper.matrix[3][3] -0.998000 _struct_ncs_oper.vector[1] 60.04700 _struct_ncs_oper.vector[2] 1.95000 _struct_ncs_oper.vector[3] 15.32900 # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A LEU 7 . A GLU 42 . A LEU 70 A GLU 105 6 ? 1 2 1 B LEU 7 . B GLU 42 . B LEU 70 B GLU 105 6 ? 1 1 2 A ARG 53 . A VAL 82 . A ARG 116 A VAL 145 6 ? 1 2 2 B ARG 53 . B VAL 82 . B ARG 116 B VAL 145 6 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _database_PDB_matrix.entry_id 2Y1Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2Y1Z _struct.title 'Human alphaB Crystallin ACD R120G' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y1Z _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text 'SMALL HEAT SHOCK PROTEIN, CHAPERONE, STRESS PROTEIN, EYE LENS PROTEIN, CATARACT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CRYAB_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P02511 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Y1Z A 4 ? 94 ? P02511 67 ? 157 ? 67 157 2 1 2Y1Z B 4 ? 94 ? P02511 67 ? 157 ? 67 157 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Y1Z GLY A 1 ? UNP P02511 ? ? 'expression tag' 64 1 1 2Y1Z ALA A 2 ? UNP P02511 ? ? 'expression tag' 65 2 1 2Y1Z MET A 3 ? UNP P02511 ? ? 'expression tag' 66 3 1 2Y1Z GLY A 57 ? UNP P02511 ARG 120 'engineered mutation' 120 4 1 2Y1Z MET A 74 ? UNP P02511 LEU 137 'engineered mutation' 137 5 2 2Y1Z GLY B 1 ? UNP P02511 ? ? 'expression tag' 64 6 2 2Y1Z ALA B 2 ? UNP P02511 ? ? 'expression tag' 65 7 2 2Y1Z MET B 3 ? UNP P02511 ? ? 'expression tag' 66 8 2 2Y1Z GLY B 57 ? UNP P02511 ARG 120 'engineered mutation' 120 9 2 2Y1Z MET B 74 ? UNP P02511 LEU 137 'engineered mutation' 137 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3270 ? 1 MORE -45.9 ? 1 'SSA (A^2)' 10020 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 22 ? GLU A 24 ? SER A 85 GLU A 87 5 ? 3 HELX_P HELX_P2 2 ASP A 66 ? ILE A 70 ? ASP A 129 ILE A 133 5 ? 5 HELX_P HELX_P3 3 SER B 22 ? GLU B 24 ? SER B 85 GLU B 87 5 ? 3 HELX_P HELX_P4 4 ASP B 66 ? ILE B 70 ? ASP B 129 ILE B 133 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 46 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 109 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 GLU _struct_mon_prot_cis.pdbx_label_seq_id_2 47 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLU _struct_mon_prot_cis.pdbx_auth_seq_id_2 110 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 6 ? BA ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 MET A 5 ? LEU A 7 ? MET A 68 LEU A 70 AA 2 ARG A 11 ? ASP A 17 ? ARG A 74 ASP A 80 AA 3 VAL A 79 ? PRO A 85 ? VAL A 142 PRO A 148 AA 4 THR A 71 ? MET A 74 ? THR A 134 MET A 137 AB 1 LEU A 26 ? LEU A 31 ? LEU A 89 LEU A 94 AB 2 VAL A 34 ? GLU A 42 ? VAL A 97 GLU A 105 AB 3 GLY A 49 ? ARG A 60 ? GLY A 112 ARG A 123 AB 4 GLY B 49 ? ARG B 60 ? GLY B 112 ARG B 123 AB 5 VAL B 34 ? GLN B 45 ? VAL B 97 GLN B 108 AB 6 LEU B 26 ? LEU B 31 ? LEU B 89 LEU B 94 BA 1 MET B 3 ? LEU B 7 ? MET B 66 LEU B 70 BA 2 ARG B 11 ? ASP B 17 ? ARG B 74 ASP B 80 BA 3 VAL B 79 ? PRO B 85 ? VAL B 142 PRO B 148 BA 4 THR B 71 ? MET B 74 ? THR B 134 MET B 137 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ARG A 6 ? N ARG A 69 O SER A 13 ? O SER A 76 AA 2 3 N LEU A 16 ? N LEU A 79 O LEU A 80 ? O LEU A 143 AA 3 4 N ASN A 83 ? N ASN A 146 O THR A 71 ? O THR A 134 AB 1 2 N LEU A 31 ? N LEU A 94 O VAL A 34 ? O VAL A 97 AB 2 3 N HIS A 41 ? N HIS A 104 O ARG A 53 ? O ARG A 116 AB 3 4 N LYS A 58 ? N LYS A 121 O PHE B 50 ? O PHE B 113 AB 4 5 N TYR B 59 ? N TYR B 122 O ILE B 35 ? O ILE B 98 AB 5 6 N HIS B 38 ? N HIS B 101 O LYS B 27 ? O LYS B 90 BA 1 2 N ARG B 6 ? N ARG B 69 O SER B 13 ? O SER B 76 BA 2 3 N LEU B 16 ? N LEU B 79 O LEU B 80 ? O LEU B 143 BA 3 4 N ASN B 83 ? N ASN B 146 O THR B 71 ? O THR B 134 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MRD 1152 ? 3 'BINDING SITE FOR RESIDUE MRD A 1152' AC2 Software A MPD 1153 ? 3 'BINDING SITE FOR RESIDUE MPD A 1153' AC3 Software B MRD 1151 ? 5 'BINDING SITE FOR RESIDUE MRD B 1151' AC4 Software B MRD 1152 ? 4 'BINDING SITE FOR RESIDUE MRD B 1152' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 72 ? SER A 135 . ? 1_555 ? 2 AC1 3 SER A 73 ? SER A 136 . ? 1_555 ? 3 AC1 3 MET B 74 ? MET B 137 . ? 3_655 ? 4 AC2 3 GLU A 47 ? GLU A 110 . ? 1_555 ? 5 AC2 3 GLY A 49 ? GLY A 112 . ? 1_555 ? 6 AC2 3 PHE A 50 ? PHE A 113 . ? 1_555 ? 7 AC3 5 MET A 74 ? MET A 137 . ? 2_544 ? 8 AC3 5 SER A 75 ? SER A 138 . ? 2_544 ? 9 AC3 5 SER B 72 ? SER B 135 . ? 1_555 ? 10 AC3 5 MET B 74 ? MET B 137 . ? 1_555 ? 11 AC3 5 LEU B 80 ? LEU B 143 . ? 1_555 ? 12 AC4 4 ARG A 60 ? ARG A 123 . ? 1_555 ? 13 AC4 4 GLU B 47 ? GLU B 110 . ? 1_555 ? 14 AC4 4 HIS B 48 ? HIS B 111 . ? 1_555 ? 15 AC4 4 GLY B 49 ? GLY B 112 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 109 ? ? 164.80 -131.79 2 1 GLU B 110 ? ? -111.97 68.26 3 1 HIS B 111 ? ? -130.35 -45.13 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 23.8861 -12.2649 16.8092 0.0695 0.0601 0.0353 -0.0067 -0.0192 -0.0352 5.5770 2.2609 2.5683 0.3762 -1.8595 -0.6351 -0.0203 0.0410 -0.0442 0.0177 -0.0537 0.0167 0.0987 0.0169 0.0740 'X-RAY DIFFRACTION' 2 ? refined 36.8936 -10.6911 -3.1666 0.0762 0.0871 0.0696 0.0213 -0.0330 0.0339 2.0483 1.4292 1.6936 -0.7175 -1.1311 0.8062 -0.0135 0.0401 -0.0867 0.0423 -0.0278 -0.0799 -0.0595 -0.1654 0.0413 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 67 ? ? A 151 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 65 ? ? B 150 ? ? ? ? # _pdbx_entry_details.entry_id 2Y1Z _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, ARG 120 TO HIS ENGINEERED RESIDUE IN CHAIN A, LEU 137 TO SER ENGINEERED RESIDUE IN CHAIN B, ARG 120 TO HIS ENGINEERED RESIDUE IN CHAIN B, LEU 137 TO SER ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;R120G IS A DISEASE ASSOCIATED MUTATION L137M TO ALLOW CRYSTALISATION. ALPHA-CRYSTALLIN DOMAIN ONLY. HUMAN ALPHAB CRYSTALLIN ACD(RESIDUES 67-157) ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 64 ? A GLY 1 2 1 Y 1 A ALA 65 ? A ALA 2 3 1 Y 1 A MET 66 ? A MET 3 4 1 Y 1 A VAL 152 ? A VAL 89 5 1 Y 1 A SER 153 ? A SER 90 6 1 Y 1 A GLY 154 ? A GLY 91 7 1 Y 1 A PRO 155 ? A PRO 92 8 1 Y 1 A GLU 156 ? A GLU 93 9 1 Y 1 A ARG 157 ? A ARG 94 10 1 Y 1 B GLN 151 ? B GLN 88 11 1 Y 1 B VAL 152 ? B VAL 89 12 1 Y 1 B SER 153 ? B SER 90 13 1 Y 1 B GLY 154 ? B GLY 91 14 1 Y 1 B PRO 155 ? B PRO 92 15 1 Y 1 B GLU 156 ? B GLU 93 16 1 Y 1 B ARG 157 ? B ARG 94 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 MPD C1 C N N 236 MPD C2 C N N 237 MPD O2 O N N 238 MPD CM C N N 239 MPD C3 C N N 240 MPD C4 C N S 241 MPD O4 O N N 242 MPD C5 C N N 243 MPD H11 H N N 244 MPD H12 H N N 245 MPD H13 H N N 246 MPD HO2 H N N 247 MPD HM1 H N N 248 MPD HM2 H N N 249 MPD HM3 H N N 250 MPD H31 H N N 251 MPD H32 H N N 252 MPD H4 H N N 253 MPD HO4 H N N 254 MPD H51 H N N 255 MPD H52 H N N 256 MPD H53 H N N 257 MRD C1 C N N 258 MRD C2 C N N 259 MRD O2 O N N 260 MRD CM C N N 261 MRD C3 C N N 262 MRD C4 C N R 263 MRD O4 O N N 264 MRD C5 C N N 265 MRD H1C1 H N N 266 MRD H1C2 H N N 267 MRD H1C3 H N N 268 MRD H2 H N N 269 MRD HMC1 H N N 270 MRD HMC2 H N N 271 MRD HMC3 H N N 272 MRD H3C1 H N N 273 MRD H3C2 H N N 274 MRD H4 H N N 275 MRD HA H N N 276 MRD H5C1 H N N 277 MRD H5C2 H N N 278 MRD H5C3 H N N 279 PHE N N N N 280 PHE CA C N S 281 PHE C C N N 282 PHE O O N N 283 PHE CB C N N 284 PHE CG C Y N 285 PHE CD1 C Y N 286 PHE CD2 C Y N 287 PHE CE1 C Y N 288 PHE CE2 C Y N 289 PHE CZ C Y N 290 PHE OXT O N N 291 PHE H H N N 292 PHE H2 H N N 293 PHE HA H N N 294 PHE HB2 H N N 295 PHE HB3 H N N 296 PHE HD1 H N N 297 PHE HD2 H N N 298 PHE HE1 H N N 299 PHE HE2 H N N 300 PHE HZ H N N 301 PHE HXT H N N 302 PRO N N N N 303 PRO CA C N S 304 PRO C C N N 305 PRO O O N N 306 PRO CB C N N 307 PRO CG C N N 308 PRO CD C N N 309 PRO OXT O N N 310 PRO H H N N 311 PRO HA H N N 312 PRO HB2 H N N 313 PRO HB3 H N N 314 PRO HG2 H N N 315 PRO HG3 H N N 316 PRO HD2 H N N 317 PRO HD3 H N N 318 PRO HXT H N N 319 SER N N N N 320 SER CA C N S 321 SER C C N N 322 SER O O N N 323 SER CB C N N 324 SER OG O N N 325 SER OXT O N N 326 SER H H N N 327 SER H2 H N N 328 SER HA H N N 329 SER HB2 H N N 330 SER HB3 H N N 331 SER HG H N N 332 SER HXT H N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TYR N N N N 351 TYR CA C N S 352 TYR C C N N 353 TYR O O N N 354 TYR CB C N N 355 TYR CG C Y N 356 TYR CD1 C Y N 357 TYR CD2 C Y N 358 TYR CE1 C Y N 359 TYR CE2 C Y N 360 TYR CZ C Y N 361 TYR OH O N N 362 TYR OXT O N N 363 TYR H H N N 364 TYR H2 H N N 365 TYR HA H N N 366 TYR HB2 H N N 367 TYR HB3 H N N 368 TYR HD1 H N N 369 TYR HD2 H N N 370 TYR HE1 H N N 371 TYR HE2 H N N 372 TYR HH H N N 373 TYR HXT H N N 374 VAL N N N N 375 VAL CA C N S 376 VAL C C N N 377 VAL O O N N 378 VAL CB C N N 379 VAL CG1 C N N 380 VAL CG2 C N N 381 VAL OXT O N N 382 VAL H H N N 383 VAL H2 H N N 384 VAL HA H N N 385 VAL HB H N N 386 VAL HG11 H N N 387 VAL HG12 H N N 388 VAL HG13 H N N 389 VAL HG21 H N N 390 VAL HG22 H N N 391 VAL HG23 H N N 392 VAL HXT H N N 393 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 MPD C1 C2 sing N N 224 MPD C1 H11 sing N N 225 MPD C1 H12 sing N N 226 MPD C1 H13 sing N N 227 MPD C2 O2 sing N N 228 MPD C2 CM sing N N 229 MPD C2 C3 sing N N 230 MPD O2 HO2 sing N N 231 MPD CM HM1 sing N N 232 MPD CM HM2 sing N N 233 MPD CM HM3 sing N N 234 MPD C3 C4 sing N N 235 MPD C3 H31 sing N N 236 MPD C3 H32 sing N N 237 MPD C4 O4 sing N N 238 MPD C4 C5 sing N N 239 MPD C4 H4 sing N N 240 MPD O4 HO4 sing N N 241 MPD C5 H51 sing N N 242 MPD C5 H52 sing N N 243 MPD C5 H53 sing N N 244 MRD C1 C2 sing N N 245 MRD C1 H1C1 sing N N 246 MRD C1 H1C2 sing N N 247 MRD C1 H1C3 sing N N 248 MRD C2 O2 sing N N 249 MRD C2 CM sing N N 250 MRD C2 C3 sing N N 251 MRD O2 H2 sing N N 252 MRD CM HMC1 sing N N 253 MRD CM HMC2 sing N N 254 MRD CM HMC3 sing N N 255 MRD C3 C4 sing N N 256 MRD C3 H3C1 sing N N 257 MRD C3 H3C2 sing N N 258 MRD C4 O4 sing N N 259 MRD C4 C5 sing N N 260 MRD C4 H4 sing N N 261 MRD O4 HA sing N N 262 MRD C5 H5C1 sing N N 263 MRD C5 H5C2 sing N N 264 MRD C5 H5C3 sing N N 265 PHE N CA sing N N 266 PHE N H sing N N 267 PHE N H2 sing N N 268 PHE CA C sing N N 269 PHE CA CB sing N N 270 PHE CA HA sing N N 271 PHE C O doub N N 272 PHE C OXT sing N N 273 PHE CB CG sing N N 274 PHE CB HB2 sing N N 275 PHE CB HB3 sing N N 276 PHE CG CD1 doub Y N 277 PHE CG CD2 sing Y N 278 PHE CD1 CE1 sing Y N 279 PHE CD1 HD1 sing N N 280 PHE CD2 CE2 doub Y N 281 PHE CD2 HD2 sing N N 282 PHE CE1 CZ doub Y N 283 PHE CE1 HE1 sing N N 284 PHE CE2 CZ sing Y N 285 PHE CE2 HE2 sing N N 286 PHE CZ HZ sing N N 287 PHE OXT HXT sing N N 288 PRO N CA sing N N 289 PRO N CD sing N N 290 PRO N H sing N N 291 PRO CA C sing N N 292 PRO CA CB sing N N 293 PRO CA HA sing N N 294 PRO C O doub N N 295 PRO C OXT sing N N 296 PRO CB CG sing N N 297 PRO CB HB2 sing N N 298 PRO CB HB3 sing N N 299 PRO CG CD sing N N 300 PRO CG HG2 sing N N 301 PRO CG HG3 sing N N 302 PRO CD HD2 sing N N 303 PRO CD HD3 sing N N 304 PRO OXT HXT sing N N 305 SER N CA sing N N 306 SER N H sing N N 307 SER N H2 sing N N 308 SER CA C sing N N 309 SER CA CB sing N N 310 SER CA HA sing N N 311 SER C O doub N N 312 SER C OXT sing N N 313 SER CB OG sing N N 314 SER CB HB2 sing N N 315 SER CB HB3 sing N N 316 SER OG HG sing N N 317 SER OXT HXT sing N N 318 THR N CA sing N N 319 THR N H sing N N 320 THR N H2 sing N N 321 THR CA C sing N N 322 THR CA CB sing N N 323 THR CA HA sing N N 324 THR C O doub N N 325 THR C OXT sing N N 326 THR CB OG1 sing N N 327 THR CB CG2 sing N N 328 THR CB HB sing N N 329 THR OG1 HG1 sing N N 330 THR CG2 HG21 sing N N 331 THR CG2 HG22 sing N N 332 THR CG2 HG23 sing N N 333 THR OXT HXT sing N N 334 TYR N CA sing N N 335 TYR N H sing N N 336 TYR N H2 sing N N 337 TYR CA C sing N N 338 TYR CA CB sing N N 339 TYR CA HA sing N N 340 TYR C O doub N N 341 TYR C OXT sing N N 342 TYR CB CG sing N N 343 TYR CB HB2 sing N N 344 TYR CB HB3 sing N N 345 TYR CG CD1 doub Y N 346 TYR CG CD2 sing Y N 347 TYR CD1 CE1 sing Y N 348 TYR CD1 HD1 sing N N 349 TYR CD2 CE2 doub Y N 350 TYR CD2 HD2 sing N N 351 TYR CE1 CZ doub Y N 352 TYR CE1 HE1 sing N N 353 TYR CE2 CZ sing Y N 354 TYR CE2 HE2 sing N N 355 TYR CZ OH sing N N 356 TYR OH HH sing N N 357 TYR OXT HXT sing N N 358 VAL N CA sing N N 359 VAL N H sing N N 360 VAL N H2 sing N N 361 VAL CA C sing N N 362 VAL CA CB sing N N 363 VAL CA HA sing N N 364 VAL C O doub N N 365 VAL C OXT sing N N 366 VAL CB CG1 sing N N 367 VAL CB CG2 sing N N 368 VAL CB HB sing N N 369 VAL CG1 HG11 sing N N 370 VAL CG1 HG12 sing N N 371 VAL CG1 HG13 sing N N 372 VAL CG2 HG21 sing N N 373 VAL CG2 HG22 sing N N 374 VAL CG2 HG23 sing N N 375 VAL OXT HXT sing N N 376 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'HUMAN ALPHA-CRYSTALLIN DOMAIN RESIDUES 71- 157' # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? '1.000H, 1.000K, L' 0.530 2 1 1 ? '-1.000H, -1.000K, L' 0.470 # _atom_sites.entry_id 2Y1Z _atom_sites.fract_transf_matrix[1][1] 0.016466 _atom_sites.fract_transf_matrix[1][2] 0.009507 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019014 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009985 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_