data_2YCM # _entry.id 2YCM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YCM pdb_00002ycm 10.2210/pdb2ycm/pdb PDBE EBI-47714 ? ? WWPDB D_1290047714 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1W77 unspecified '2C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE ( ISPD) FROM ARABIDOPSIS THALIANA' PDB 2YC3 unspecified 'INHIBITORS OF THE HERBICIDAL TARGET ISPD' PDB 2YC5 unspecified 'INHIBITORS OF THE HERBICIDAL TARGET ISPD' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YCM _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-03-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Hoeffken, H.W.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Inhibitors of the Herbicidal Target Ispd: Allosteric Site Binding.' Angew.Chem.Int.Ed.Engl. 50 7931 ? 2011 ? GE 1433-7851 9999 ? 21766403 10.1002/ANIE.201102281 1 ;The Crystal Structure of a Plant 2C-Methyl-D- Erythritol 4-Phosphate Cytidylyltransferase Exhibits a Distinct Quaternary Structure Compared to Bacterial Homologues and a Possible Role in Feedback Regulation for Cytidine Monophosphate. ; 'FEBS J.' 273 1065 ? 2006 ? UK 1742-464X ? ? 16478479 10.1111/J.1742-4658.2006.05133.X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Witschel, M.C.' 1 ? primary 'Hoeffken, H.W.' 2 ? primary 'Seet, M.' 3 ? primary 'Parra, L.' 4 ? primary 'Mietzner, T.' 5 ? primary 'Thater, F.' 6 ? primary 'Niggeweg, R.' 7 ? primary 'Rohl, F.' 8 ? primary 'Illarionov, B.' 9 ? primary 'Rohdich, F.' 10 ? primary 'Kaiser, J.' 11 ? primary 'Fischer, M.' 12 ? primary 'Bacher, A.' 13 ? primary 'Diederich, F.' 14 ? 1 'Gabrielsen, M.' 15 ? 1 'Kaiser, J.' 16 ? 1 'Rohdich, F.' 17 ? 1 'Eisenreich, W.' 18 ? 1 'Laupitz, R.' 19 ? 1 'Bacher, A.' 20 ? 1 'Bond, C.S.' 21 ? 1 'Hunter, W.N.' 22 ? # _cell.entry_id 2YCM _cell.length_a 75.060 _cell.length_b 75.060 _cell.length_c 220.820 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YCM _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC' 25299.000 1 2.7.7.60 ? 'CYTIDYLTRANSFERASE DOMAIN, RESIDUES 76-302' ? 2 non-polymer syn 'CADMIUM ION' 112.411 3 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'COPPER (II) ION' 63.546 1 ? ? ? ? 5 non-polymer syn '6-BENZYL-5-CHLORO-7-HYDROXYPYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXYLIC ACID' 303.701 1 ? ? ? ? 6 water nat water 18.015 93 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHASE, MEP CYTIDYLYLTRANSFERASE, ATMECT, ATMEPCT, MCT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGK ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQ TPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS ; _entity_poly.pdbx_seq_one_letter_code_can ;EKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGK ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQ TPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LYS n 1 3 SER n 1 4 VAL n 1 5 SER n 1 6 VAL n 1 7 ILE n 1 8 LEU n 1 9 LEU n 1 10 ALA n 1 11 GLY n 1 12 GLY n 1 13 GLN n 1 14 GLY n 1 15 LYS n 1 16 ARG n 1 17 MET n 1 18 LYS n 1 19 MET n 1 20 SER n 1 21 MET n 1 22 PRO n 1 23 LYS n 1 24 GLN n 1 25 TYR n 1 26 ILE n 1 27 PRO n 1 28 LEU n 1 29 LEU n 1 30 GLY n 1 31 GLN n 1 32 PRO n 1 33 ILE n 1 34 ALA n 1 35 LEU n 1 36 TYR n 1 37 SER n 1 38 PHE n 1 39 PHE n 1 40 THR n 1 41 PHE n 1 42 SER n 1 43 ARG n 1 44 MET n 1 45 PRO n 1 46 GLU n 1 47 VAL n 1 48 LYS n 1 49 GLU n 1 50 ILE n 1 51 VAL n 1 52 VAL n 1 53 VAL n 1 54 CYS n 1 55 ASP n 1 56 PRO n 1 57 PHE n 1 58 PHE n 1 59 ARG n 1 60 ASP n 1 61 ILE n 1 62 PHE n 1 63 GLU n 1 64 GLU n 1 65 TYR n 1 66 GLU n 1 67 GLU n 1 68 SER n 1 69 ILE n 1 70 ASP n 1 71 VAL n 1 72 ASP n 1 73 LEU n 1 74 SER n 1 75 PHE n 1 76 ALA n 1 77 ILE n 1 78 PRO n 1 79 GLY n 1 80 LYS n 1 81 GLU n 1 82 ARG n 1 83 GLN n 1 84 ASP n 1 85 SER n 1 86 VAL n 1 87 TYR n 1 88 SER n 1 89 GLY n 1 90 LEU n 1 91 GLN n 1 92 GLU n 1 93 ILE n 1 94 ASP n 1 95 VAL n 1 96 ASN n 1 97 SER n 1 98 GLU n 1 99 LEU n 1 100 VAL n 1 101 CYS n 1 102 ILE n 1 103 HIS n 1 104 ASP n 1 105 SER n 1 106 ALA n 1 107 ARG n 1 108 PRO n 1 109 LEU n 1 110 VAL n 1 111 ASN n 1 112 THR n 1 113 GLU n 1 114 ASP n 1 115 VAL n 1 116 GLU n 1 117 LYS n 1 118 VAL n 1 119 LEU n 1 120 LYS n 1 121 ASP n 1 122 GLY n 1 123 SER n 1 124 ALA n 1 125 VAL n 1 126 GLY n 1 127 ALA n 1 128 ALA n 1 129 VAL n 1 130 LEU n 1 131 GLY n 1 132 VAL n 1 133 PRO n 1 134 ALA n 1 135 LYS n 1 136 ALA n 1 137 THR n 1 138 ILE n 1 139 LYS n 1 140 GLU n 1 141 VAL n 1 142 ASN n 1 143 SER n 1 144 ASP n 1 145 SER n 1 146 LEU n 1 147 VAL n 1 148 VAL n 1 149 LYS n 1 150 THR n 1 151 LEU n 1 152 ASP n 1 153 ARG n 1 154 LYS n 1 155 THR n 1 156 LEU n 1 157 TRP n 1 158 GLU n 1 159 MET n 1 160 GLN n 1 161 THR n 1 162 PRO n 1 163 GLN n 1 164 VAL n 1 165 ILE n 1 166 LYS n 1 167 PRO n 1 168 GLU n 1 169 LEU n 1 170 LEU n 1 171 LYS n 1 172 LYS n 1 173 GLY n 1 174 PHE n 1 175 GLU n 1 176 LEU n 1 177 VAL n 1 178 LYS n 1 179 SER n 1 180 GLU n 1 181 GLY n 1 182 LEU n 1 183 GLU n 1 184 VAL n 1 185 THR n 1 186 ASP n 1 187 ASP n 1 188 VAL n 1 189 SER n 1 190 ILE n 1 191 VAL n 1 192 GLU n 1 193 TYR n 1 194 LEU n 1 195 LYS n 1 196 HIS n 1 197 PRO n 1 198 VAL n 1 199 TYR n 1 200 VAL n 1 201 SER n 1 202 GLN n 1 203 GLY n 1 204 SER n 1 205 TYR n 1 206 THR n 1 207 ASN n 1 208 ILE n 1 209 LYS n 1 210 VAL n 1 211 THR n 1 212 THR n 1 213 PRO n 1 214 ASP n 1 215 ASP n 1 216 LEU n 1 217 LEU n 1 218 LEU n 1 219 ALA n 1 220 GLU n 1 221 ARG n 1 222 ILE n 1 223 LEU n 1 224 SER n 1 225 GLU n 1 226 ASP n 1 227 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'THALE CRESS' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ARABIDOPSIS THALIANA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain M15 _entity_src_gen.pdbx_host_org_variant PREP4 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PNCO113 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ISPD_ARATH _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P69834 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YCM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 227 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P69834 _struct_ref_seq.db_align_beg 76 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 302 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 76 _struct_ref_seq.pdbx_auth_seq_align_end 302 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2YCM _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 74 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P69834 _struct_ref_seq_dif.db_mon_id ARG _struct_ref_seq_dif.pdbx_seq_db_seq_num 149 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 149 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 30A non-polymer . '6-BENZYL-5-CHLORO-7-HYDROXYPYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXYLIC ACID' ? 'C14 H10 Cl N3 O3' 303.701 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YCM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.48 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'NATIVE CRYSTALS (SEE REMARK 1, PDB 1W77) WERE SOAKED WITH A SATURATED SOLUTION OF LIGAND' # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-03-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.939272 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 0.939272 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YCM _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 36.50 _reflns.d_resolution_high 1.80 _reflns.number_obs 22629 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.13 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.84 _reflns.B_iso_Wilson_estimate 38.6 _reflns.pdbx_redundancy 6.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.43 _reflns_shell.pdbx_redundancy 6.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YCM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21497 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 73.61 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.79 _refine.ls_R_factor_obs 0.19887 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19700 _refine.ls_R_factor_R_free 0.23252 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1132 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 30.227 _refine.aniso_B[1][1] -0.49 _refine.aniso_B[2][2] -0.49 _refine.aniso_B[3][3] 0.73 _refine.aniso_B[1][2] -0.24 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. THE ELECTRON DENSITY MAP SUGGESTS THAT IN THE CRYSTAL THE ALLOSTERIC POCKET IS ONLY PARTIALLY OCCUPIED AND THEREFOR THE ELECTRON DENSITY REFLECTS AN OVERLAY OF THE UNLIGANDED AND LIGANDED ENZYME. THIS IS IN ACCORDANCE WITH THE HIGH TEMPERATURE FACTORS OF PART THE LIGAND AND OF THE AMINO ACIDS 264 TO 268 WHICH HAVE TO MOVE TO OPEN THE ALLOSTERIC BINDING POCKET. ; _refine.pdbx_starting_model 'PDB ENTRY 2YC3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.205 _refine.pdbx_overall_ESU_R_Free 0.123 _refine.overall_SU_ML 0.095 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.984 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1640 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1759 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 73.61 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.022 ? 1708 'X-RAY DIFFRACTION' ? r_bond_other_d 0.006 0.020 ? 1114 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.908 2.003 ? 2325 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.035 3.000 ? 2761 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.901 5.000 ? 214 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.227 26.232 ? 69 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.425 15.000 ? 295 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.879 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.112 0.200 ? 275 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.021 ? 1875 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 302 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.903 1.500 ? 1075 'X-RAY DIFFRACTION' ? r_mcbond_other 0.570 1.500 ? 428 'X-RAY DIFFRACTION' ? r_mcangle_it 3.124 2.000 ? 1751 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.654 3.000 ? 633 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 7.062 4.500 ? 574 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.028 3.000 ? 2822 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 1557 _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.percent_reflns_obs 99.94 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2YCM _struct.title 'Inhibitors of herbicidal target IspD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YCM _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, HERBICIDE, ALLOSTERIC BINDING POCKET, NON-MEVALONATE-PATHWAY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 22 ? TYR A 25 ? PRO A 97 TYR A 100 5 ? 4 HELX_P HELX_P2 2 ILE A 33 ? ARG A 43 ? ILE A 108 ARG A 118 1 ? 11 HELX_P HELX_P3 3 ASP A 55 ? PHE A 57 ? ASP A 130 PHE A 132 5 ? 3 HELX_P HELX_P4 4 PHE A 58 ? GLU A 64 ? PHE A 133 GLU A 139 1 ? 7 HELX_P HELX_P5 5 TYR A 65 ? ILE A 69 ? TYR A 140 ILE A 144 5 ? 5 HELX_P HELX_P6 6 GLU A 81 ? GLN A 91 ? GLU A 156 GLN A 166 1 ? 11 HELX_P HELX_P7 7 ASN A 111 ? GLY A 126 ? ASN A 186 GLY A 201 1 ? 16 HELX_P HELX_P8 8 LYS A 166 ? GLY A 181 ? LYS A 241 GLY A 256 1 ? 16 HELX_P HELX_P9 9 VAL A 188 ? LEU A 194 ? VAL A 263 LEU A 269 1 ? 7 HELX_P HELX_P10 10 THR A 212 ? GLU A 225 ? THR A 287 GLU A 300 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 63 OE2 ? ? ? 1_555 B CD . CD ? ? A GLU 138 A CD 1301 5_675 ? ? ? ? ? ? ? 1.820 ? ? metalc2 metalc ? ? A GLU 63 OE2 ? ? ? 5_675 B CD . CD ? ? A GLU 138 A CD 1301 1_555 ? ? ? ? ? ? ? 1.820 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 161 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 236 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 162 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 237 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 9.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 7 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ASP A 72 ? ALA A 76 ? ASP A 147 ALA A 151 AA 2 VAL A 47 ? VAL A 53 ? VAL A 122 VAL A 128 AA 3 VAL A 4 ? LEU A 9 ? VAL A 79 LEU A 84 AA 4 LEU A 99 ? ASP A 104 ? LEU A 174 ASP A 179 AA 5 TRP A 157 ? ILE A 165 ? TRP A 232 ILE A 240 AA 6 ALA A 127 ? PRO A 133 ? ALA A 202 PRO A 208 AA 7 TYR A 199 ? GLN A 202 ? TYR A 274 GLN A 277 AB 1 PRO A 27 ? LEU A 28 ? PRO A 102 LEU A 103 AB 2 GLN A 31 ? PRO A 32 ? GLN A 106 PRO A 107 AC 1 GLU A 140 ? VAL A 141 ? GLU A 215 VAL A 216 AC 2 VAL A 147 ? VAL A 148 ? VAL A 222 VAL A 223 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASP A 72 ? N ASP A 147 O LYS A 48 ? O LYS A 123 AA 2 3 N LYS A 48 ? N LYS A 123 O VAL A 4 ? O VAL A 79 AA 3 4 N SER A 5 ? N SER A 80 O LEU A 99 ? O LEU A 174 AA 4 5 N ILE A 102 ? N ILE A 177 O GLN A 163 ? O GLN A 238 AA 5 6 N VAL A 164 ? N VAL A 239 O ALA A 128 ? O ALA A 203 AA 6 7 N VAL A 129 ? N VAL A 204 O TYR A 199 ? O TYR A 274 AB 1 2 N LEU A 28 ? N LEU A 103 O GLN A 31 ? O GLN A 106 AC 1 2 N GLU A 140 ? N GLU A 215 O VAL A 148 ? O VAL A 223 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 1301 ? 5 'BINDING SITE FOR RESIDUE CD A 1301' AC2 Software A CD 1302 ? 4 'BINDING SITE FOR RESIDUE CD A 1302' AC3 Software A CD 1303 ? 2 'BINDING SITE FOR RESIDUE CD A 1303' AC4 Software A NA 1304 ? 2 'BINDING SITE FOR RESIDUE NA A 1304' AC5 Software A CU 1305 ? 1 'BINDING SITE FOR RESIDUE CU A 1305' AC6 Software A 30A 1306 ? 14 'BINDING SITE FOR RESIDUE 30A A 1306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LYS A 48 ? LYS A 123 . ? 1_555 ? 2 AC1 5 GLU A 63 ? GLU A 138 . ? 5_675 ? 3 AC1 5 GLU A 66 ? GLU A 141 . ? 5_675 ? 4 AC1 5 ASP A 94 ? ASP A 169 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH A 2017 . ? 5_675 ? 6 AC2 4 GLU A 46 ? GLU A 121 . ? 3_565 ? 7 AC2 4 GLU A 116 ? GLU A 191 . ? 3_565 ? 8 AC2 4 HIS A 196 ? HIS A 271 . ? 1_555 ? 9 AC2 4 HOH H . ? HOH A 2081 . ? 1_555 ? 10 AC3 2 GLU A 92 ? GLU A 167 . ? 5_675 ? 11 AC3 2 GLU A 92 ? GLU A 167 . ? 1_555 ? 12 AC4 2 GLU A 64 ? GLU A 139 . ? 1_555 ? 13 AC4 2 HOH H . ? HOH A 2015 . ? 1_555 ? 14 AC5 1 ASP A 215 ? ASP A 290 . ? 1_555 ? 15 AC6 14 ARG A 82 ? ARG A 157 . ? 1_555 ? 16 AC6 14 GLN A 83 ? GLN A 158 . ? 1_555 ? 17 AC6 14 ILE A 102 ? ILE A 177 . ? 1_555 ? 18 AC6 14 ALA A 128 ? ALA A 203 . ? 1_555 ? 19 AC6 14 GLN A 163 ? GLN A 238 . ? 1_555 ? 20 AC6 14 VAL A 184 ? VAL A 259 . ? 1_555 ? 21 AC6 14 ASP A 186 ? ASP A 261 . ? 1_555 ? 22 AC6 14 ASP A 187 ? ASP A 262 . ? 1_555 ? 23 AC6 14 VAL A 188 ? VAL A 263 . ? 1_555 ? 24 AC6 14 SER A 189 ? SER A 264 . ? 1_555 ? 25 AC6 14 ILE A 190 ? ILE A 265 . ? 1_555 ? 26 AC6 14 VAL A 191 ? VAL A 266 . ? 1_555 ? 27 AC6 14 VAL A 198 ? VAL A 273 . ? 1_555 ? 28 AC6 14 HOH H . ? HOH A 2093 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YCM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YCM _atom_sites.fract_transf_matrix[1][1] 0.013323 _atom_sites.fract_transf_matrix[1][2] 0.007692 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015384 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004529 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD CL CU N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 76 76 GLU GLU A . n A 1 2 LYS 2 77 77 LYS LYS A . n A 1 3 SER 3 78 78 SER SER A . n A 1 4 VAL 4 79 79 VAL VAL A . n A 1 5 SER 5 80 80 SER SER A . n A 1 6 VAL 6 81 81 VAL VAL A . n A 1 7 ILE 7 82 82 ILE ILE A . n A 1 8 LEU 8 83 83 LEU LEU A . n A 1 9 LEU 9 84 84 LEU LEU A . n A 1 10 ALA 10 85 85 ALA ALA A . n A 1 11 GLY 11 86 86 GLY GLY A . n A 1 12 GLY 12 87 ? ? ? A . n A 1 13 GLN 13 88 ? ? ? A . n A 1 14 GLY 14 89 ? ? ? A . n A 1 15 LYS 15 90 ? ? ? A . n A 1 16 ARG 16 91 ? ? ? A . n A 1 17 MET 17 92 ? ? ? A . n A 1 18 LYS 18 93 ? ? ? A . n A 1 19 MET 19 94 ? ? ? A . n A 1 20 SER 20 95 ? ? ? A . n A 1 21 MET 21 96 96 MET MET A . n A 1 22 PRO 22 97 97 PRO PRO A . n A 1 23 LYS 23 98 98 LYS LYS A . n A 1 24 GLN 24 99 99 GLN GLN A . n A 1 25 TYR 25 100 100 TYR TYR A . n A 1 26 ILE 26 101 101 ILE ILE A . n A 1 27 PRO 27 102 102 PRO PRO A . n A 1 28 LEU 28 103 103 LEU LEU A . n A 1 29 LEU 29 104 104 LEU LEU A . n A 1 30 GLY 30 105 105 GLY GLY A . n A 1 31 GLN 31 106 106 GLN GLN A . n A 1 32 PRO 32 107 107 PRO PRO A . n A 1 33 ILE 33 108 108 ILE ILE A . n A 1 34 ALA 34 109 109 ALA ALA A . n A 1 35 LEU 35 110 110 LEU LEU A . n A 1 36 TYR 36 111 111 TYR TYR A . n A 1 37 SER 37 112 112 SER SER A . n A 1 38 PHE 38 113 113 PHE PHE A . n A 1 39 PHE 39 114 114 PHE PHE A . n A 1 40 THR 40 115 115 THR THR A . n A 1 41 PHE 41 116 116 PHE PHE A . n A 1 42 SER 42 117 117 SER SER A . n A 1 43 ARG 43 118 118 ARG ARG A . n A 1 44 MET 44 119 119 MET MET A . n A 1 45 PRO 45 120 120 PRO PRO A . n A 1 46 GLU 46 121 121 GLU GLU A . n A 1 47 VAL 47 122 122 VAL VAL A . n A 1 48 LYS 48 123 123 LYS LYS A . n A 1 49 GLU 49 124 124 GLU GLU A . n A 1 50 ILE 50 125 125 ILE ILE A . n A 1 51 VAL 51 126 126 VAL VAL A . n A 1 52 VAL 52 127 127 VAL VAL A . n A 1 53 VAL 53 128 128 VAL VAL A . n A 1 54 CYS 54 129 129 CYS CYS A . n A 1 55 ASP 55 130 130 ASP ASP A . n A 1 56 PRO 56 131 131 PRO PRO A . n A 1 57 PHE 57 132 132 PHE PHE A . n A 1 58 PHE 58 133 133 PHE PHE A . n A 1 59 ARG 59 134 134 ARG ARG A . n A 1 60 ASP 60 135 135 ASP ASP A . n A 1 61 ILE 61 136 136 ILE ILE A . n A 1 62 PHE 62 137 137 PHE PHE A . n A 1 63 GLU 63 138 138 GLU GLU A . n A 1 64 GLU 64 139 139 GLU GLU A . n A 1 65 TYR 65 140 140 TYR TYR A . n A 1 66 GLU 66 141 141 GLU GLU A . n A 1 67 GLU 67 142 142 GLU GLU A . n A 1 68 SER 68 143 143 SER SER A . n A 1 69 ILE 69 144 144 ILE ILE A . n A 1 70 ASP 70 145 145 ASP ASP A . n A 1 71 VAL 71 146 146 VAL VAL A . n A 1 72 ASP 72 147 147 ASP ASP A . n A 1 73 LEU 73 148 148 LEU LEU A . n A 1 74 SER 74 149 149 SER SER A . n A 1 75 PHE 75 150 150 PHE PHE A . n A 1 76 ALA 76 151 151 ALA ALA A . n A 1 77 ILE 77 152 152 ILE ILE A . n A 1 78 PRO 78 153 153 PRO PRO A . n A 1 79 GLY 79 154 154 GLY GLY A . n A 1 80 LYS 80 155 155 LYS LYS A . n A 1 81 GLU 81 156 156 GLU GLU A . n A 1 82 ARG 82 157 157 ARG ARG A . n A 1 83 GLN 83 158 158 GLN GLN A . n A 1 84 ASP 84 159 159 ASP ASP A . n A 1 85 SER 85 160 160 SER SER A . n A 1 86 VAL 86 161 161 VAL VAL A . n A 1 87 TYR 87 162 162 TYR TYR A . n A 1 88 SER 88 163 163 SER SER A . n A 1 89 GLY 89 164 164 GLY GLY A . n A 1 90 LEU 90 165 165 LEU LEU A . n A 1 91 GLN 91 166 166 GLN GLN A . n A 1 92 GLU 92 167 167 GLU GLU A . n A 1 93 ILE 93 168 168 ILE ILE A . n A 1 94 ASP 94 169 169 ASP ASP A . n A 1 95 VAL 95 170 170 VAL VAL A . n A 1 96 ASN 96 171 171 ASN ASN A . n A 1 97 SER 97 172 172 SER SER A . n A 1 98 GLU 98 173 173 GLU GLU A . n A 1 99 LEU 99 174 174 LEU LEU A . n A 1 100 VAL 100 175 175 VAL VAL A . n A 1 101 CYS 101 176 176 CYS CYS A . n A 1 102 ILE 102 177 177 ILE ILE A . n A 1 103 HIS 103 178 178 HIS HIS A . n A 1 104 ASP 104 179 179 ASP ASP A . n A 1 105 SER 105 180 180 SER SER A . n A 1 106 ALA 106 181 181 ALA ALA A . n A 1 107 ARG 107 182 182 ARG ARG A . n A 1 108 PRO 108 183 183 PRO PRO A . n A 1 109 LEU 109 184 184 LEU LEU A . n A 1 110 VAL 110 185 185 VAL VAL A . n A 1 111 ASN 111 186 186 ASN ASN A . n A 1 112 THR 112 187 187 THR THR A . n A 1 113 GLU 113 188 188 GLU GLU A . n A 1 114 ASP 114 189 189 ASP ASP A . n A 1 115 VAL 115 190 190 VAL VAL A . n A 1 116 GLU 116 191 191 GLU GLU A . n A 1 117 LYS 117 192 192 LYS LYS A . n A 1 118 VAL 118 193 193 VAL VAL A . n A 1 119 LEU 119 194 194 LEU LEU A . n A 1 120 LYS 120 195 195 LYS LYS A . n A 1 121 ASP 121 196 196 ASP ASP A . n A 1 122 GLY 122 197 197 GLY GLY A . n A 1 123 SER 123 198 198 SER SER A . n A 1 124 ALA 124 199 199 ALA ALA A . n A 1 125 VAL 125 200 200 VAL VAL A . n A 1 126 GLY 126 201 201 GLY GLY A . n A 1 127 ALA 127 202 202 ALA ALA A . n A 1 128 ALA 128 203 203 ALA ALA A . n A 1 129 VAL 129 204 204 VAL VAL A . n A 1 130 LEU 130 205 205 LEU LEU A . n A 1 131 GLY 131 206 206 GLY GLY A . n A 1 132 VAL 132 207 207 VAL VAL A . n A 1 133 PRO 133 208 208 PRO PRO A . n A 1 134 ALA 134 209 209 ALA ALA A . n A 1 135 LYS 135 210 210 LYS LYS A . n A 1 136 ALA 136 211 211 ALA ALA A . n A 1 137 THR 137 212 212 THR THR A . n A 1 138 ILE 138 213 213 ILE ILE A . n A 1 139 LYS 139 214 214 LYS LYS A . n A 1 140 GLU 140 215 215 GLU GLU A . n A 1 141 VAL 141 216 216 VAL VAL A . n A 1 142 ASN 142 217 217 ASN ASN A . n A 1 143 SER 143 218 218 SER SER A . n A 1 144 ASP 144 219 219 ASP ASP A . n A 1 145 SER 145 220 220 SER SER A . n A 1 146 LEU 146 221 221 LEU LEU A . n A 1 147 VAL 147 222 222 VAL VAL A . n A 1 148 VAL 148 223 223 VAL VAL A . n A 1 149 LYS 149 224 224 LYS LYS A . n A 1 150 THR 150 225 225 THR THR A . n A 1 151 LEU 151 226 226 LEU LEU A . n A 1 152 ASP 152 227 ? ? ? A . n A 1 153 ARG 153 228 ? ? ? A . n A 1 154 LYS 154 229 ? ? ? A . n A 1 155 THR 155 230 230 THR THR A . n A 1 156 LEU 156 231 231 LEU LEU A . n A 1 157 TRP 157 232 232 TRP TRP A . n A 1 158 GLU 158 233 233 GLU GLU A . n A 1 159 MET 159 234 234 MET MET A . n A 1 160 GLN 160 235 235 GLN GLN A . n A 1 161 THR 161 236 236 THR THR A . n A 1 162 PRO 162 237 237 PRO PRO A . n A 1 163 GLN 163 238 238 GLN GLN A . n A 1 164 VAL 164 239 239 VAL VAL A . n A 1 165 ILE 165 240 240 ILE ILE A . n A 1 166 LYS 166 241 241 LYS LYS A . n A 1 167 PRO 167 242 242 PRO PRO A . n A 1 168 GLU 168 243 243 GLU GLU A . n A 1 169 LEU 169 244 244 LEU LEU A . n A 1 170 LEU 170 245 245 LEU LEU A . n A 1 171 LYS 171 246 246 LYS LYS A . n A 1 172 LYS 172 247 247 LYS LYS A . n A 1 173 GLY 173 248 248 GLY GLY A . n A 1 174 PHE 174 249 249 PHE PHE A . n A 1 175 GLU 175 250 250 GLU GLU A . n A 1 176 LEU 176 251 251 LEU LEU A . n A 1 177 VAL 177 252 252 VAL VAL A . n A 1 178 LYS 178 253 253 LYS LYS A . n A 1 179 SER 179 254 254 SER SER A . n A 1 180 GLU 180 255 255 GLU GLU A . n A 1 181 GLY 181 256 256 GLY GLY A . n A 1 182 LEU 182 257 257 LEU LEU A . n A 1 183 GLU 183 258 258 GLU GLU A . n A 1 184 VAL 184 259 259 VAL VAL A . n A 1 185 THR 185 260 260 THR THR A . n A 1 186 ASP 186 261 261 ASP ASP A . n A 1 187 ASP 187 262 262 ASP ASP A . n A 1 188 VAL 188 263 263 VAL VAL A . n A 1 189 SER 189 264 264 SER SER A . n A 1 190 ILE 190 265 265 ILE ILE A . n A 1 191 VAL 191 266 266 VAL VAL A . n A 1 192 GLU 192 267 267 GLU GLU A . n A 1 193 TYR 193 268 268 TYR TYR A . n A 1 194 LEU 194 269 269 LEU LEU A . n A 1 195 LYS 195 270 270 LYS LYS A . n A 1 196 HIS 196 271 271 HIS HIS A . n A 1 197 PRO 197 272 272 PRO PRO A . n A 1 198 VAL 198 273 273 VAL VAL A . n A 1 199 TYR 199 274 274 TYR TYR A . n A 1 200 VAL 200 275 275 VAL VAL A . n A 1 201 SER 201 276 276 SER SER A . n A 1 202 GLN 202 277 277 GLN GLN A . n A 1 203 GLY 203 278 278 GLY GLY A . n A 1 204 SER 204 279 279 SER SER A . n A 1 205 TYR 205 280 280 TYR TYR A . n A 1 206 THR 206 281 281 THR THR A . n A 1 207 ASN 207 282 282 ASN ASN A . n A 1 208 ILE 208 283 283 ILE ILE A . n A 1 209 LYS 209 284 284 LYS LYS A . n A 1 210 VAL 210 285 285 VAL VAL A . n A 1 211 THR 211 286 286 THR THR A . n A 1 212 THR 212 287 287 THR THR A . n A 1 213 PRO 213 288 288 PRO PRO A . n A 1 214 ASP 214 289 289 ASP ASP A . n A 1 215 ASP 215 290 290 ASP ASP A . n A 1 216 LEU 216 291 291 LEU LEU A . n A 1 217 LEU 217 292 292 LEU LEU A . n A 1 218 LEU 218 293 293 LEU LEU A . n A 1 219 ALA 219 294 294 ALA ALA A . n A 1 220 GLU 220 295 295 GLU GLU A . n A 1 221 ARG 221 296 296 ARG ARG A . n A 1 222 ILE 222 297 297 ILE ILE A . n A 1 223 LEU 223 298 298 LEU LEU A . n A 1 224 SER 224 299 299 SER SER A . n A 1 225 GLU 225 300 300 GLU GLU A . n A 1 226 ASP 226 301 ? ? ? A . n A 1 227 SER 227 302 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 1301 1301 CD CD A . C 2 CD 1 1302 1302 CD CD A . D 2 CD 1 1303 1303 CD CD A . E 3 NA 1 1304 1304 NA NA A . F 4 CU 1 1305 1305 CU CU A . G 5 30A 1 1306 1306 30A 30A A . H 6 HOH 1 2001 2001 HOH HOH A . H 6 HOH 2 2002 2002 HOH HOH A . H 6 HOH 3 2003 2003 HOH HOH A . H 6 HOH 4 2004 2004 HOH HOH A . H 6 HOH 5 2005 2005 HOH HOH A . H 6 HOH 6 2006 2006 HOH HOH A . H 6 HOH 7 2007 2007 HOH HOH A . H 6 HOH 8 2008 2008 HOH HOH A . H 6 HOH 9 2009 2009 HOH HOH A . H 6 HOH 10 2010 2010 HOH HOH A . H 6 HOH 11 2011 2011 HOH HOH A . H 6 HOH 12 2012 2012 HOH HOH A . H 6 HOH 13 2013 2013 HOH HOH A . H 6 HOH 14 2014 2014 HOH HOH A . H 6 HOH 15 2015 2015 HOH HOH A . H 6 HOH 16 2016 2016 HOH HOH A . H 6 HOH 17 2017 2017 HOH HOH A . H 6 HOH 18 2018 2018 HOH HOH A . H 6 HOH 19 2019 2019 HOH HOH A . H 6 HOH 20 2020 2020 HOH HOH A . H 6 HOH 21 2021 2021 HOH HOH A . H 6 HOH 22 2022 2022 HOH HOH A . H 6 HOH 23 2023 2023 HOH HOH A . H 6 HOH 24 2024 2024 HOH HOH A . H 6 HOH 25 2025 2025 HOH HOH A . H 6 HOH 26 2026 2026 HOH HOH A . H 6 HOH 27 2027 2027 HOH HOH A . H 6 HOH 28 2028 2028 HOH HOH A . H 6 HOH 29 2029 2029 HOH HOH A . H 6 HOH 30 2030 2030 HOH HOH A . H 6 HOH 31 2031 2031 HOH HOH A . H 6 HOH 32 2032 2032 HOH HOH A . H 6 HOH 33 2033 2033 HOH HOH A . H 6 HOH 34 2034 2034 HOH HOH A . H 6 HOH 35 2035 2035 HOH HOH A . H 6 HOH 36 2036 2036 HOH HOH A . H 6 HOH 37 2037 2037 HOH HOH A . H 6 HOH 38 2038 2038 HOH HOH A . H 6 HOH 39 2039 2039 HOH HOH A . H 6 HOH 40 2040 2040 HOH HOH A . H 6 HOH 41 2041 2041 HOH HOH A . H 6 HOH 42 2042 2042 HOH HOH A . H 6 HOH 43 2043 2043 HOH HOH A . H 6 HOH 44 2044 2044 HOH HOH A . H 6 HOH 45 2045 2045 HOH HOH A . H 6 HOH 46 2046 2046 HOH HOH A . H 6 HOH 47 2047 2047 HOH HOH A . H 6 HOH 48 2048 2048 HOH HOH A . H 6 HOH 49 2049 2049 HOH HOH A . H 6 HOH 50 2050 2050 HOH HOH A . H 6 HOH 51 2051 2051 HOH HOH A . H 6 HOH 52 2052 2052 HOH HOH A . H 6 HOH 53 2053 2053 HOH HOH A . H 6 HOH 54 2054 2054 HOH HOH A . H 6 HOH 55 2055 2055 HOH HOH A . H 6 HOH 56 2056 2056 HOH HOH A . H 6 HOH 57 2057 2057 HOH HOH A . H 6 HOH 58 2058 2058 HOH HOH A . H 6 HOH 59 2059 2059 HOH HOH A . H 6 HOH 60 2060 2060 HOH HOH A . H 6 HOH 61 2061 2061 HOH HOH A . H 6 HOH 62 2062 2062 HOH HOH A . H 6 HOH 63 2063 2063 HOH HOH A . H 6 HOH 64 2064 2064 HOH HOH A . H 6 HOH 65 2065 2065 HOH HOH A . H 6 HOH 66 2066 2066 HOH HOH A . H 6 HOH 67 2067 2067 HOH HOH A . H 6 HOH 68 2068 2068 HOH HOH A . H 6 HOH 69 2069 2069 HOH HOH A . H 6 HOH 70 2070 2070 HOH HOH A . H 6 HOH 71 2071 2071 HOH HOH A . H 6 HOH 72 2072 2072 HOH HOH A . H 6 HOH 73 2073 2073 HOH HOH A . H 6 HOH 74 2074 2074 HOH HOH A . H 6 HOH 75 2075 2075 HOH HOH A . H 6 HOH 76 2076 2076 HOH HOH A . H 6 HOH 77 2077 2077 HOH HOH A . H 6 HOH 78 2078 2078 HOH HOH A . H 6 HOH 79 2079 2079 HOH HOH A . H 6 HOH 80 2080 2080 HOH HOH A . H 6 HOH 81 2081 2081 HOH HOH A . H 6 HOH 82 2082 2082 HOH HOH A . H 6 HOH 83 2083 2083 HOH HOH A . H 6 HOH 84 2084 2084 HOH HOH A . H 6 HOH 85 2085 2085 HOH HOH A . H 6 HOH 86 2086 2086 HOH HOH A . H 6 HOH 87 2087 2087 HOH HOH A . H 6 HOH 88 2088 2088 HOH HOH A . H 6 HOH 89 2089 2089 HOH HOH A . H 6 HOH 90 2090 2090 HOH HOH A . H 6 HOH 91 2091 2091 HOH HOH A . H 6 HOH 92 2092 2092 HOH HOH A . H 6 HOH 93 2093 2093 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2210 ? 1 MORE -70.0 ? 1 'SSA (A^2)' 21530 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 130.0077336161 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id GLU _pdbx_struct_conn_angle.ptnr1_label_seq_id 63 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr1_auth_seq_id 138 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id CD _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id CD _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id CD _pdbx_struct_conn_angle.ptnr2_auth_seq_id 1301 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 5_675 _pdbx_struct_conn_angle.ptnr3_label_atom_id OE2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id GLU _pdbx_struct_conn_angle.ptnr3_label_seq_id 63 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr3_auth_seq_id 138 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 5_675 _pdbx_struct_conn_angle.value 162.0 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-24 2 'Structure model' 1 1 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other 5 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_database_status 5 2 'Structure model' pdbx_initial_refinement_model 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_sf' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0102 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 REFMAC phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 179 ? B O A HOH 2042 ? ? 1.87 2 1 O A HOH 2033 ? ? O A HOH 2034 ? ? 1.88 3 1 OE2 A GLU 267 ? ? O A HOH 2080 ? ? 1.92 4 1 O3 A 30A 1306 ? ? O A HOH 2093 ? ? 1.94 5 1 OD2 A ASP 261 ? ? O A HOH 2080 ? ? 2.06 6 1 OD1 A ASP 135 ? A O A HOH 2012 ? ? 2.11 7 1 OE2 A GLU 167 ? ? CD A CD 1303 ? ? 2.12 8 1 OD1 A ASP 159 ? ? O A HOH 2033 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2018 ? ? 1_555 O A HOH 2024 ? ? 5_675 1.94 2 1 OE2 A GLU 121 ? ? 1_555 CD A CD 1302 ? ? 2_665 2.07 3 1 O A HOH 2028 ? ? 1_555 O A HOH 2039 ? ? 5_675 2.08 4 1 OE2 A GLU 191 ? ? 1_555 CD A CD 1302 ? ? 2_665 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A GLU 173 ? ? CG A GLU 173 ? ? 1.670 1.517 0.153 0.019 N 2 1 CG A GLU 173 ? ? CD A GLU 173 ? ? 1.607 1.515 0.092 0.015 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 77 ? ? 34.46 52.10 2 1 LEU A 104 ? ? 35.51 53.99 3 1 ASP A 145 ? ? -91.84 46.25 4 1 GLN A 235 ? ? -121.49 -163.57 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 98 ? CG ? A LYS 23 CG 2 1 Y 1 A LYS 98 ? CD ? A LYS 23 CD 3 1 Y 1 A LYS 98 ? CE ? A LYS 23 CE 4 1 Y 1 A LYS 98 ? NZ ? A LYS 23 NZ 5 1 Y 1 A LEU 226 ? CG ? A LEU 151 CG 6 1 Y 1 A LEU 226 ? CD1 ? A LEU 151 CD1 7 1 Y 1 A LEU 226 ? CD2 ? A LEU 151 CD2 8 1 Y 1 A THR 286 ? OG1 ? A THR 211 OG1 9 1 Y 1 A THR 286 ? CG2 ? A THR 211 CG2 10 1 Y 1 A THR 287 ? OG1 ? A THR 212 OG1 11 1 Y 1 A THR 287 ? CG2 ? A THR 212 CG2 12 1 Y 1 A PRO 288 ? CG ? A PRO 213 CG 13 1 Y 1 A PRO 288 ? CD ? A PRO 213 CD 14 1 Y 1 A ASP 289 ? CG ? A ASP 214 CG 15 1 Y 1 A ASP 289 ? OD1 ? A ASP 214 OD1 16 1 Y 1 A ASP 289 ? OD2 ? A ASP 214 OD2 17 1 Y 1 A LEU 292 ? CG ? A LEU 217 CG 18 1 Y 1 A LEU 292 ? CD1 ? A LEU 217 CD1 19 1 Y 1 A LEU 292 ? CD2 ? A LEU 217 CD2 20 1 Y 1 A ARG 296 ? CG ? A ARG 221 CG 21 1 Y 1 A ARG 296 ? CD ? A ARG 221 CD 22 1 Y 1 A ARG 296 ? NE ? A ARG 221 NE 23 1 Y 1 A ARG 296 ? CZ ? A ARG 221 CZ 24 1 Y 1 A ARG 296 ? NH1 ? A ARG 221 NH1 25 1 Y 1 A ARG 296 ? NH2 ? A ARG 221 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 87 ? A GLY 12 2 1 Y 1 A GLN 88 ? A GLN 13 3 1 Y 1 A GLY 89 ? A GLY 14 4 1 Y 1 A LYS 90 ? A LYS 15 5 1 Y 1 A ARG 91 ? A ARG 16 6 1 Y 1 A MET 92 ? A MET 17 7 1 Y 1 A LYS 93 ? A LYS 18 8 1 Y 1 A MET 94 ? A MET 19 9 1 Y 1 A SER 95 ? A SER 20 10 1 Y 1 A ASP 227 ? A ASP 152 11 1 Y 1 A ARG 228 ? A ARG 153 12 1 Y 1 A LYS 229 ? A LYS 154 13 1 Y 1 A ASP 301 ? A ASP 226 14 1 Y 1 A SER 302 ? A SER 227 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 30A CL CL N N 1 30A C1 C Y N 2 30A C2 C N N 3 30A O3 O N N 4 30A C4 C Y N 5 30A O4 O N N 6 30A N5 N Y N 7 30A C6 C Y N 8 30A O7 O N N 9 30A C8 C Y N 10 30A C9 C N N 11 30A C10 C Y N 12 30A C11 C Y N 13 30A C12 C Y N 14 30A C13 C Y N 15 30A C14 C Y N 16 30A C15 C Y N 17 30A C16 C Y N 18 30A N18 N Y N 19 30A N19 N Y N 20 30A C20 C Y N 21 30A H20 H N N 22 30A H4 H N N 23 30A H91C H N N 24 30A H92C H N N 25 30A H11 H N N 26 30A H15 H N N 27 30A H12 H N N 28 30A H13 H N N 29 30A H14 H N N 30 30A H7 H N N 31 ALA N N N N 32 ALA CA C N S 33 ALA C C N N 34 ALA O O N N 35 ALA CB C N N 36 ALA OXT O N N 37 ALA H H N N 38 ALA H2 H N N 39 ALA HA H N N 40 ALA HB1 H N N 41 ALA HB2 H N N 42 ALA HB3 H N N 43 ALA HXT H N N 44 ARG N N N N 45 ARG CA C N S 46 ARG C C N N 47 ARG O O N N 48 ARG CB C N N 49 ARG CG C N N 50 ARG CD C N N 51 ARG NE N N N 52 ARG CZ C N N 53 ARG NH1 N N N 54 ARG NH2 N N N 55 ARG OXT O N N 56 ARG H H N N 57 ARG H2 H N N 58 ARG HA H N N 59 ARG HB2 H N N 60 ARG HB3 H N N 61 ARG HG2 H N N 62 ARG HG3 H N N 63 ARG HD2 H N N 64 ARG HD3 H N N 65 ARG HE H N N 66 ARG HH11 H N N 67 ARG HH12 H N N 68 ARG HH21 H N N 69 ARG HH22 H N N 70 ARG HXT H N N 71 ASN N N N N 72 ASN CA C N S 73 ASN C C N N 74 ASN O O N N 75 ASN CB C N N 76 ASN CG C N N 77 ASN OD1 O N N 78 ASN ND2 N N N 79 ASN OXT O N N 80 ASN H H N N 81 ASN H2 H N N 82 ASN HA H N N 83 ASN HB2 H N N 84 ASN HB3 H N N 85 ASN HD21 H N N 86 ASN HD22 H N N 87 ASN HXT H N N 88 ASP N N N N 89 ASP CA C N S 90 ASP C C N N 91 ASP O O N N 92 ASP CB C N N 93 ASP CG C N N 94 ASP OD1 O N N 95 ASP OD2 O N N 96 ASP OXT O N N 97 ASP H H N N 98 ASP H2 H N N 99 ASP HA H N N 100 ASP HB2 H N N 101 ASP HB3 H N N 102 ASP HD2 H N N 103 ASP HXT H N N 104 CD CD CD N N 105 CU CU CU N N 106 CYS N N N N 107 CYS CA C N R 108 CYS C C N N 109 CYS O O N N 110 CYS CB C N N 111 CYS SG S N N 112 CYS OXT O N N 113 CYS H H N N 114 CYS H2 H N N 115 CYS HA H N N 116 CYS HB2 H N N 117 CYS HB3 H N N 118 CYS HG H N N 119 CYS HXT H N N 120 GLN N N N N 121 GLN CA C N S 122 GLN C C N N 123 GLN O O N N 124 GLN CB C N N 125 GLN CG C N N 126 GLN CD C N N 127 GLN OE1 O N N 128 GLN NE2 N N N 129 GLN OXT O N N 130 GLN H H N N 131 GLN H2 H N N 132 GLN HA H N N 133 GLN HB2 H N N 134 GLN HB3 H N N 135 GLN HG2 H N N 136 GLN HG3 H N N 137 GLN HE21 H N N 138 GLN HE22 H N N 139 GLN HXT H N N 140 GLU N N N N 141 GLU CA C N S 142 GLU C C N N 143 GLU O O N N 144 GLU CB C N N 145 GLU CG C N N 146 GLU CD C N N 147 GLU OE1 O N N 148 GLU OE2 O N N 149 GLU OXT O N N 150 GLU H H N N 151 GLU H2 H N N 152 GLU HA H N N 153 GLU HB2 H N N 154 GLU HB3 H N N 155 GLU HG2 H N N 156 GLU HG3 H N N 157 GLU HE2 H N N 158 GLU HXT H N N 159 GLY N N N N 160 GLY CA C N N 161 GLY C C N N 162 GLY O O N N 163 GLY OXT O N N 164 GLY H H N N 165 GLY H2 H N N 166 GLY HA2 H N N 167 GLY HA3 H N N 168 GLY HXT H N N 169 HIS N N N N 170 HIS CA C N S 171 HIS C C N N 172 HIS O O N N 173 HIS CB C N N 174 HIS CG C Y N 175 HIS ND1 N Y N 176 HIS CD2 C Y N 177 HIS CE1 C Y N 178 HIS NE2 N Y N 179 HIS OXT O N N 180 HIS H H N N 181 HIS H2 H N N 182 HIS HA H N N 183 HIS HB2 H N N 184 HIS HB3 H N N 185 HIS HD1 H N N 186 HIS HD2 H N N 187 HIS HE1 H N N 188 HIS HE2 H N N 189 HIS HXT H N N 190 HOH O O N N 191 HOH H1 H N N 192 HOH H2 H N N 193 ILE N N N N 194 ILE CA C N S 195 ILE C C N N 196 ILE O O N N 197 ILE CB C N S 198 ILE CG1 C N N 199 ILE CG2 C N N 200 ILE CD1 C N N 201 ILE OXT O N N 202 ILE H H N N 203 ILE H2 H N N 204 ILE HA H N N 205 ILE HB H N N 206 ILE HG12 H N N 207 ILE HG13 H N N 208 ILE HG21 H N N 209 ILE HG22 H N N 210 ILE HG23 H N N 211 ILE HD11 H N N 212 ILE HD12 H N N 213 ILE HD13 H N N 214 ILE HXT H N N 215 LEU N N N N 216 LEU CA C N S 217 LEU C C N N 218 LEU O O N N 219 LEU CB C N N 220 LEU CG C N N 221 LEU CD1 C N N 222 LEU CD2 C N N 223 LEU OXT O N N 224 LEU H H N N 225 LEU H2 H N N 226 LEU HA H N N 227 LEU HB2 H N N 228 LEU HB3 H N N 229 LEU HG H N N 230 LEU HD11 H N N 231 LEU HD12 H N N 232 LEU HD13 H N N 233 LEU HD21 H N N 234 LEU HD22 H N N 235 LEU HD23 H N N 236 LEU HXT H N N 237 LYS N N N N 238 LYS CA C N S 239 LYS C C N N 240 LYS O O N N 241 LYS CB C N N 242 LYS CG C N N 243 LYS CD C N N 244 LYS CE C N N 245 LYS NZ N N N 246 LYS OXT O N N 247 LYS H H N N 248 LYS H2 H N N 249 LYS HA H N N 250 LYS HB2 H N N 251 LYS HB3 H N N 252 LYS HG2 H N N 253 LYS HG3 H N N 254 LYS HD2 H N N 255 LYS HD3 H N N 256 LYS HE2 H N N 257 LYS HE3 H N N 258 LYS HZ1 H N N 259 LYS HZ2 H N N 260 LYS HZ3 H N N 261 LYS HXT H N N 262 MET N N N N 263 MET CA C N S 264 MET C C N N 265 MET O O N N 266 MET CB C N N 267 MET CG C N N 268 MET SD S N N 269 MET CE C N N 270 MET OXT O N N 271 MET H H N N 272 MET H2 H N N 273 MET HA H N N 274 MET HB2 H N N 275 MET HB3 H N N 276 MET HG2 H N N 277 MET HG3 H N N 278 MET HE1 H N N 279 MET HE2 H N N 280 MET HE3 H N N 281 MET HXT H N N 282 NA NA NA N N 283 PHE N N N N 284 PHE CA C N S 285 PHE C C N N 286 PHE O O N N 287 PHE CB C N N 288 PHE CG C Y N 289 PHE CD1 C Y N 290 PHE CD2 C Y N 291 PHE CE1 C Y N 292 PHE CE2 C Y N 293 PHE CZ C Y N 294 PHE OXT O N N 295 PHE H H N N 296 PHE H2 H N N 297 PHE HA H N N 298 PHE HB2 H N N 299 PHE HB3 H N N 300 PHE HD1 H N N 301 PHE HD2 H N N 302 PHE HE1 H N N 303 PHE HE2 H N N 304 PHE HZ H N N 305 PHE HXT H N N 306 PRO N N N N 307 PRO CA C N S 308 PRO C C N N 309 PRO O O N N 310 PRO CB C N N 311 PRO CG C N N 312 PRO CD C N N 313 PRO OXT O N N 314 PRO H H N N 315 PRO HA H N N 316 PRO HB2 H N N 317 PRO HB3 H N N 318 PRO HG2 H N N 319 PRO HG3 H N N 320 PRO HD2 H N N 321 PRO HD3 H N N 322 PRO HXT H N N 323 SER N N N N 324 SER CA C N S 325 SER C C N N 326 SER O O N N 327 SER CB C N N 328 SER OG O N N 329 SER OXT O N N 330 SER H H N N 331 SER H2 H N N 332 SER HA H N N 333 SER HB2 H N N 334 SER HB3 H N N 335 SER HG H N N 336 SER HXT H N N 337 THR N N N N 338 THR CA C N S 339 THR C C N N 340 THR O O N N 341 THR CB C N R 342 THR OG1 O N N 343 THR CG2 C N N 344 THR OXT O N N 345 THR H H N N 346 THR H2 H N N 347 THR HA H N N 348 THR HB H N N 349 THR HG1 H N N 350 THR HG21 H N N 351 THR HG22 H N N 352 THR HG23 H N N 353 THR HXT H N N 354 TRP N N N N 355 TRP CA C N S 356 TRP C C N N 357 TRP O O N N 358 TRP CB C N N 359 TRP CG C Y N 360 TRP CD1 C Y N 361 TRP CD2 C Y N 362 TRP NE1 N Y N 363 TRP CE2 C Y N 364 TRP CE3 C Y N 365 TRP CZ2 C Y N 366 TRP CZ3 C Y N 367 TRP CH2 C Y N 368 TRP OXT O N N 369 TRP H H N N 370 TRP H2 H N N 371 TRP HA H N N 372 TRP HB2 H N N 373 TRP HB3 H N N 374 TRP HD1 H N N 375 TRP HE1 H N N 376 TRP HE3 H N N 377 TRP HZ2 H N N 378 TRP HZ3 H N N 379 TRP HH2 H N N 380 TRP HXT H N N 381 TYR N N N N 382 TYR CA C N S 383 TYR C C N N 384 TYR O O N N 385 TYR CB C N N 386 TYR CG C Y N 387 TYR CD1 C Y N 388 TYR CD2 C Y N 389 TYR CE1 C Y N 390 TYR CE2 C Y N 391 TYR CZ C Y N 392 TYR OH O N N 393 TYR OXT O N N 394 TYR H H N N 395 TYR H2 H N N 396 TYR HA H N N 397 TYR HB2 H N N 398 TYR HB3 H N N 399 TYR HD1 H N N 400 TYR HD2 H N N 401 TYR HE1 H N N 402 TYR HE2 H N N 403 TYR HH H N N 404 TYR HXT H N N 405 VAL N N N N 406 VAL CA C N S 407 VAL C C N N 408 VAL O O N N 409 VAL CB C N N 410 VAL CG1 C N N 411 VAL CG2 C N N 412 VAL OXT O N N 413 VAL H H N N 414 VAL H2 H N N 415 VAL HA H N N 416 VAL HB H N N 417 VAL HG11 H N N 418 VAL HG12 H N N 419 VAL HG13 H N N 420 VAL HG21 H N N 421 VAL HG22 H N N 422 VAL HG23 H N N 423 VAL HXT H N N 424 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 30A CL C16 sing N N 1 30A C1 C2 sing N N 2 30A C1 C4 doub Y N 3 30A C1 C20 sing Y N 4 30A C2 O3 doub N N 5 30A C2 O4 sing N N 6 30A C4 N5 sing Y N 7 30A C4 N18 sing Y N 8 30A N5 C6 sing Y N 9 30A N5 N19 sing Y N 10 30A C6 O7 sing N N 11 30A C6 C8 doub Y N 12 30A C8 C9 sing N N 13 30A C8 C16 sing Y N 14 30A C9 C10 sing N N 15 30A C10 C11 sing Y N 16 30A C10 C15 doub Y N 17 30A C11 C12 doub Y N 18 30A C12 C13 sing Y N 19 30A C13 C14 doub Y N 20 30A C14 C15 sing Y N 21 30A C16 N18 doub Y N 22 30A N19 C20 doub Y N 23 30A C20 H20 sing N N 24 30A O4 H4 sing N N 25 30A C9 H91C sing N N 26 30A C9 H92C sing N N 27 30A C11 H11 sing N N 28 30A C15 H15 sing N N 29 30A C12 H12 sing N N 30 30A C13 H13 sing N N 31 30A C14 H14 sing N N 32 30A O7 H7 sing N N 33 ALA N CA sing N N 34 ALA N H sing N N 35 ALA N H2 sing N N 36 ALA CA C sing N N 37 ALA CA CB sing N N 38 ALA CA HA sing N N 39 ALA C O doub N N 40 ALA C OXT sing N N 41 ALA CB HB1 sing N N 42 ALA CB HB2 sing N N 43 ALA CB HB3 sing N N 44 ALA OXT HXT sing N N 45 ARG N CA sing N N 46 ARG N H sing N N 47 ARG N H2 sing N N 48 ARG CA C sing N N 49 ARG CA CB sing N N 50 ARG CA HA sing N N 51 ARG C O doub N N 52 ARG C OXT sing N N 53 ARG CB CG sing N N 54 ARG CB HB2 sing N N 55 ARG CB HB3 sing N N 56 ARG CG CD sing N N 57 ARG CG HG2 sing N N 58 ARG CG HG3 sing N N 59 ARG CD NE sing N N 60 ARG CD HD2 sing N N 61 ARG CD HD3 sing N N 62 ARG NE CZ sing N N 63 ARG NE HE sing N N 64 ARG CZ NH1 sing N N 65 ARG CZ NH2 doub N N 66 ARG NH1 HH11 sing N N 67 ARG NH1 HH12 sing N N 68 ARG NH2 HH21 sing N N 69 ARG NH2 HH22 sing N N 70 ARG OXT HXT sing N N 71 ASN N CA sing N N 72 ASN N H sing N N 73 ASN N H2 sing N N 74 ASN CA C sing N N 75 ASN CA CB sing N N 76 ASN CA HA sing N N 77 ASN C O doub N N 78 ASN C OXT sing N N 79 ASN CB CG sing N N 80 ASN CB HB2 sing N N 81 ASN CB HB3 sing N N 82 ASN CG OD1 doub N N 83 ASN CG ND2 sing N N 84 ASN ND2 HD21 sing N N 85 ASN ND2 HD22 sing N N 86 ASN OXT HXT sing N N 87 ASP N CA sing N N 88 ASP N H sing N N 89 ASP N H2 sing N N 90 ASP CA C sing N N 91 ASP CA CB sing N N 92 ASP CA HA sing N N 93 ASP C O doub N N 94 ASP C OXT sing N N 95 ASP CB CG sing N N 96 ASP CB HB2 sing N N 97 ASP CB HB3 sing N N 98 ASP CG OD1 doub N N 99 ASP CG OD2 sing N N 100 ASP OD2 HD2 sing N N 101 ASP OXT HXT sing N N 102 CYS N CA sing N N 103 CYS N H sing N N 104 CYS N H2 sing N N 105 CYS CA C sing N N 106 CYS CA CB sing N N 107 CYS CA HA sing N N 108 CYS C O doub N N 109 CYS C OXT sing N N 110 CYS CB SG sing N N 111 CYS CB HB2 sing N N 112 CYS CB HB3 sing N N 113 CYS SG HG sing N N 114 CYS OXT HXT sing N N 115 GLN N CA sing N N 116 GLN N H sing N N 117 GLN N H2 sing N N 118 GLN CA C sing N N 119 GLN CA CB sing N N 120 GLN CA HA sing N N 121 GLN C O doub N N 122 GLN C OXT sing N N 123 GLN CB CG sing N N 124 GLN CB HB2 sing N N 125 GLN CB HB3 sing N N 126 GLN CG CD sing N N 127 GLN CG HG2 sing N N 128 GLN CG HG3 sing N N 129 GLN CD OE1 doub N N 130 GLN CD NE2 sing N N 131 GLN NE2 HE21 sing N N 132 GLN NE2 HE22 sing N N 133 GLN OXT HXT sing N N 134 GLU N CA sing N N 135 GLU N H sing N N 136 GLU N H2 sing N N 137 GLU CA C sing N N 138 GLU CA CB sing N N 139 GLU CA HA sing N N 140 GLU C O doub N N 141 GLU C OXT sing N N 142 GLU CB CG sing N N 143 GLU CB HB2 sing N N 144 GLU CB HB3 sing N N 145 GLU CG CD sing N N 146 GLU CG HG2 sing N N 147 GLU CG HG3 sing N N 148 GLU CD OE1 doub N N 149 GLU CD OE2 sing N N 150 GLU OE2 HE2 sing N N 151 GLU OXT HXT sing N N 152 GLY N CA sing N N 153 GLY N H sing N N 154 GLY N H2 sing N N 155 GLY CA C sing N N 156 GLY CA HA2 sing N N 157 GLY CA HA3 sing N N 158 GLY C O doub N N 159 GLY C OXT sing N N 160 GLY OXT HXT sing N N 161 HIS N CA sing N N 162 HIS N H sing N N 163 HIS N H2 sing N N 164 HIS CA C sing N N 165 HIS CA CB sing N N 166 HIS CA HA sing N N 167 HIS C O doub N N 168 HIS C OXT sing N N 169 HIS CB CG sing N N 170 HIS CB HB2 sing N N 171 HIS CB HB3 sing N N 172 HIS CG ND1 sing Y N 173 HIS CG CD2 doub Y N 174 HIS ND1 CE1 doub Y N 175 HIS ND1 HD1 sing N N 176 HIS CD2 NE2 sing Y N 177 HIS CD2 HD2 sing N N 178 HIS CE1 NE2 sing Y N 179 HIS CE1 HE1 sing N N 180 HIS NE2 HE2 sing N N 181 HIS OXT HXT sing N N 182 HOH O H1 sing N N 183 HOH O H2 sing N N 184 ILE N CA sing N N 185 ILE N H sing N N 186 ILE N H2 sing N N 187 ILE CA C sing N N 188 ILE CA CB sing N N 189 ILE CA HA sing N N 190 ILE C O doub N N 191 ILE C OXT sing N N 192 ILE CB CG1 sing N N 193 ILE CB CG2 sing N N 194 ILE CB HB sing N N 195 ILE CG1 CD1 sing N N 196 ILE CG1 HG12 sing N N 197 ILE CG1 HG13 sing N N 198 ILE CG2 HG21 sing N N 199 ILE CG2 HG22 sing N N 200 ILE CG2 HG23 sing N N 201 ILE CD1 HD11 sing N N 202 ILE CD1 HD12 sing N N 203 ILE CD1 HD13 sing N N 204 ILE OXT HXT sing N N 205 LEU N CA sing N N 206 LEU N H sing N N 207 LEU N H2 sing N N 208 LEU CA C sing N N 209 LEU CA CB sing N N 210 LEU CA HA sing N N 211 LEU C O doub N N 212 LEU C OXT sing N N 213 LEU CB CG sing N N 214 LEU CB HB2 sing N N 215 LEU CB HB3 sing N N 216 LEU CG CD1 sing N N 217 LEU CG CD2 sing N N 218 LEU CG HG sing N N 219 LEU CD1 HD11 sing N N 220 LEU CD1 HD12 sing N N 221 LEU CD1 HD13 sing N N 222 LEU CD2 HD21 sing N N 223 LEU CD2 HD22 sing N N 224 LEU CD2 HD23 sing N N 225 LEU OXT HXT sing N N 226 LYS N CA sing N N 227 LYS N H sing N N 228 LYS N H2 sing N N 229 LYS CA C sing N N 230 LYS CA CB sing N N 231 LYS CA HA sing N N 232 LYS C O doub N N 233 LYS C OXT sing N N 234 LYS CB CG sing N N 235 LYS CB HB2 sing N N 236 LYS CB HB3 sing N N 237 LYS CG CD sing N N 238 LYS CG HG2 sing N N 239 LYS CG HG3 sing N N 240 LYS CD CE sing N N 241 LYS CD HD2 sing N N 242 LYS CD HD3 sing N N 243 LYS CE NZ sing N N 244 LYS CE HE2 sing N N 245 LYS CE HE3 sing N N 246 LYS NZ HZ1 sing N N 247 LYS NZ HZ2 sing N N 248 LYS NZ HZ3 sing N N 249 LYS OXT HXT sing N N 250 MET N CA sing N N 251 MET N H sing N N 252 MET N H2 sing N N 253 MET CA C sing N N 254 MET CA CB sing N N 255 MET CA HA sing N N 256 MET C O doub N N 257 MET C OXT sing N N 258 MET CB CG sing N N 259 MET CB HB2 sing N N 260 MET CB HB3 sing N N 261 MET CG SD sing N N 262 MET CG HG2 sing N N 263 MET CG HG3 sing N N 264 MET SD CE sing N N 265 MET CE HE1 sing N N 266 MET CE HE2 sing N N 267 MET CE HE3 sing N N 268 MET OXT HXT sing N N 269 PHE N CA sing N N 270 PHE N H sing N N 271 PHE N H2 sing N N 272 PHE CA C sing N N 273 PHE CA CB sing N N 274 PHE CA HA sing N N 275 PHE C O doub N N 276 PHE C OXT sing N N 277 PHE CB CG sing N N 278 PHE CB HB2 sing N N 279 PHE CB HB3 sing N N 280 PHE CG CD1 doub Y N 281 PHE CG CD2 sing Y N 282 PHE CD1 CE1 sing Y N 283 PHE CD1 HD1 sing N N 284 PHE CD2 CE2 doub Y N 285 PHE CD2 HD2 sing N N 286 PHE CE1 CZ doub Y N 287 PHE CE1 HE1 sing N N 288 PHE CE2 CZ sing Y N 289 PHE CE2 HE2 sing N N 290 PHE CZ HZ sing N N 291 PHE OXT HXT sing N N 292 PRO N CA sing N N 293 PRO N CD sing N N 294 PRO N H sing N N 295 PRO CA C sing N N 296 PRO CA CB sing N N 297 PRO CA HA sing N N 298 PRO C O doub N N 299 PRO C OXT sing N N 300 PRO CB CG sing N N 301 PRO CB HB2 sing N N 302 PRO CB HB3 sing N N 303 PRO CG CD sing N N 304 PRO CG HG2 sing N N 305 PRO CG HG3 sing N N 306 PRO CD HD2 sing N N 307 PRO CD HD3 sing N N 308 PRO OXT HXT sing N N 309 SER N CA sing N N 310 SER N H sing N N 311 SER N H2 sing N N 312 SER CA C sing N N 313 SER CA CB sing N N 314 SER CA HA sing N N 315 SER C O doub N N 316 SER C OXT sing N N 317 SER CB OG sing N N 318 SER CB HB2 sing N N 319 SER CB HB3 sing N N 320 SER OG HG sing N N 321 SER OXT HXT sing N N 322 THR N CA sing N N 323 THR N H sing N N 324 THR N H2 sing N N 325 THR CA C sing N N 326 THR CA CB sing N N 327 THR CA HA sing N N 328 THR C O doub N N 329 THR C OXT sing N N 330 THR CB OG1 sing N N 331 THR CB CG2 sing N N 332 THR CB HB sing N N 333 THR OG1 HG1 sing N N 334 THR CG2 HG21 sing N N 335 THR CG2 HG22 sing N N 336 THR CG2 HG23 sing N N 337 THR OXT HXT sing N N 338 TRP N CA sing N N 339 TRP N H sing N N 340 TRP N H2 sing N N 341 TRP CA C sing N N 342 TRP CA CB sing N N 343 TRP CA HA sing N N 344 TRP C O doub N N 345 TRP C OXT sing N N 346 TRP CB CG sing N N 347 TRP CB HB2 sing N N 348 TRP CB HB3 sing N N 349 TRP CG CD1 doub Y N 350 TRP CG CD2 sing Y N 351 TRP CD1 NE1 sing Y N 352 TRP CD1 HD1 sing N N 353 TRP CD2 CE2 doub Y N 354 TRP CD2 CE3 sing Y N 355 TRP NE1 CE2 sing Y N 356 TRP NE1 HE1 sing N N 357 TRP CE2 CZ2 sing Y N 358 TRP CE3 CZ3 doub Y N 359 TRP CE3 HE3 sing N N 360 TRP CZ2 CH2 doub Y N 361 TRP CZ2 HZ2 sing N N 362 TRP CZ3 CH2 sing Y N 363 TRP CZ3 HZ3 sing N N 364 TRP CH2 HH2 sing N N 365 TRP OXT HXT sing N N 366 TYR N CA sing N N 367 TYR N H sing N N 368 TYR N H2 sing N N 369 TYR CA C sing N N 370 TYR CA CB sing N N 371 TYR CA HA sing N N 372 TYR C O doub N N 373 TYR C OXT sing N N 374 TYR CB CG sing N N 375 TYR CB HB2 sing N N 376 TYR CB HB3 sing N N 377 TYR CG CD1 doub Y N 378 TYR CG CD2 sing Y N 379 TYR CD1 CE1 sing Y N 380 TYR CD1 HD1 sing N N 381 TYR CD2 CE2 doub Y N 382 TYR CD2 HD2 sing N N 383 TYR CE1 CZ doub Y N 384 TYR CE1 HE1 sing N N 385 TYR CE2 CZ sing Y N 386 TYR CE2 HE2 sing N N 387 TYR CZ OH sing N N 388 TYR OH HH sing N N 389 TYR OXT HXT sing N N 390 VAL N CA sing N N 391 VAL N H sing N N 392 VAL N H2 sing N N 393 VAL CA C sing N N 394 VAL CA CB sing N N 395 VAL CA HA sing N N 396 VAL C O doub N N 397 VAL C OXT sing N N 398 VAL CB CG1 sing N N 399 VAL CB CG2 sing N N 400 VAL CB HB sing N N 401 VAL CG1 HG11 sing N N 402 VAL CG1 HG12 sing N N 403 VAL CG1 HG13 sing N N 404 VAL CG2 HG21 sing N N 405 VAL CG2 HG22 sing N N 406 VAL CG2 HG23 sing N N 407 VAL OXT HXT sing N N 408 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 'SODIUM ION' NA 4 'COPPER (II) ION' CU 5 '6-BENZYL-5-CHLORO-7-HYDROXYPYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXYLIC ACID' 30A 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2YC3 _pdbx_initial_refinement_model.details 'PDB ENTRY 2YC3' #