data_2YKA # _entry.id 2YKA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YKA PDBE EBI-47699 WWPDB D_1290047699 BMRB 17693 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2F3J unspecified 'THE SOLUTION STRUCTURE OF THE REF2-I MRNA EXPORT FACTOR(RESIDUES 1-155).' BMRB 17693 unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YKA _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-05-26 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tunnicliffe, R.B.' 1 'Hautbergue, G.M.' 2 'Kalra, P.' 3 'Wilson, S.A.' 4 'Golovanov, A.P.' 5 # _citation.id primary _citation.title ;Competitive and Cooperative Interactions Mediate RNA Transfer from Herpesvirus Saimiri Orf57 to the Mammalian Export Adaptor Alyref. ; _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 10 _citation.page_first 3907 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7366 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24550725 _citation.pdbx_database_id_DOI 10.1371/JOURNAL.PPAT.1003907 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tunnicliffe, R.B.' 1 primary 'Hautbergue, G.M.' 2 primary 'Wilson, S.A.' 3 primary 'Kalra, P.' 4 primary 'Golovanov, A.P.' 5 # _cell.entry_id 2YKA _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YKA _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA AND EXPORT FACTOR-BINDING PROTEIN 2' 13596.133 1 ? ? 'RRM DOMAIN, RESIDUES 53-155' ? 2 polymer man '52 KDA IMMEDIATE-EARLY PHOSPHOPROTEIN' 2507.809 1 ? ? 'RESIDUES 103-120' 'REF/ALY INTERACTION FRAGMENT OF ORF57 PROTEIN' # loop_ _entity_name_com.entity_id _entity_name_com.name 1 REF2-I 2 'ORF57 PROTEIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MASMTGGQQMGRDPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTAD VHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEHHHHHH ; ;MASMTGGQQMGRDPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTAD VHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEHHHHHH ; A ? 2 'polypeptide(L)' no no GPLGSSCKTSWADRVREAAAQRR GPLGSSCKTSWADRVREAAAQRR B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 MET n 1 5 THR n 1 6 GLY n 1 7 GLY n 1 8 GLN n 1 9 GLN n 1 10 MET n 1 11 GLY n 1 12 ARG n 1 13 ASP n 1 14 PRO n 1 15 ASP n 1 16 LYS n 1 17 TRP n 1 18 GLN n 1 19 HIS n 1 20 ASP n 1 21 LEU n 1 22 PHE n 1 23 ASP n 1 24 SER n 1 25 GLY n 1 26 CYS n 1 27 GLY n 1 28 GLY n 1 29 GLY n 1 30 GLU n 1 31 GLY n 1 32 VAL n 1 33 GLU n 1 34 THR n 1 35 GLY n 1 36 ALA n 1 37 LYS n 1 38 LEU n 1 39 LEU n 1 40 VAL n 1 41 SER n 1 42 ASN n 1 43 LEU n 1 44 ASP n 1 45 PHE n 1 46 GLY n 1 47 VAL n 1 48 SER n 1 49 ASP n 1 50 ALA n 1 51 ASP n 1 52 ILE n 1 53 GLN n 1 54 GLU n 1 55 LEU n 1 56 PHE n 1 57 ALA n 1 58 GLU n 1 59 PHE n 1 60 GLY n 1 61 THR n 1 62 LEU n 1 63 LYS n 1 64 LYS n 1 65 ALA n 1 66 ALA n 1 67 VAL n 1 68 ASP n 1 69 TYR n 1 70 ASP n 1 71 ARG n 1 72 SER n 1 73 GLY n 1 74 ARG n 1 75 SER n 1 76 LEU n 1 77 GLY n 1 78 THR n 1 79 ALA n 1 80 ASP n 1 81 VAL n 1 82 HIS n 1 83 PHE n 1 84 GLU n 1 85 ARG n 1 86 ARG n 1 87 ALA n 1 88 ASP n 1 89 ALA n 1 90 LEU n 1 91 LYS n 1 92 ALA n 1 93 MET n 1 94 LYS n 1 95 GLN n 1 96 TYR n 1 97 LYS n 1 98 GLY n 1 99 VAL n 1 100 PRO n 1 101 LEU n 1 102 ASP n 1 103 GLY n 1 104 ARG n 1 105 PRO n 1 106 MET n 1 107 ASP n 1 108 ILE n 1 109 GLN n 1 110 LEU n 1 111 VAL n 1 112 ALA n 1 113 SER n 1 114 GLN n 1 115 ILE n 1 116 ASP n 1 117 LEU n 1 118 GLU n 1 119 HIS n 1 120 HIS n 1 121 HIS n 1 122 HIS n 1 123 HIS n 1 124 HIS n 2 1 GLY n 2 2 PRO n 2 3 LEU n 2 4 GLY n 2 5 SER n 2 6 SER n 2 7 CYS n 2 8 LYS n 2 9 THR n 2 10 SER n 2 11 TRP n 2 12 ALA n 2 13 ASP n 2 14 ARG n 2 15 VAL n 2 16 ARG n 2 17 GLU n 2 18 ALA n 2 19 ALA n 2 20 ALA n 2 21 GLN n 2 22 ARG n 2 23 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'HOUSE MOUSE' ? ? ? ? ? ? ? ? 'MUS MUSCULUS' 10090 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3) RP' ? ? ? ? ? ? ? PLASMID PET24B ? ? ? ? ? 2 1 sample ? ? ? HVS ? ? ? ? ? ? ? ? 'SAIMIRIINE HERPESVIRUS 2' 10381 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3) RP' ? ? ? ? ? ? ? PLASMID PGEX-6P-1 ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP REFP2_MOUSE 1 ? ? Q9JJW6 ? 2 UNP IE63_SHV21 2 ? ? P13199 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YKA A 14 ? 116 ? Q9JJW6 53 ? 155 ? 53 155 2 2 2YKA B 6 ? 23 ? P13199 103 ? 120 ? 103 120 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YKA MET A 1 ? UNP Q9JJW6 ? ? 'expression tag' 40 1 1 2YKA ALA A 2 ? UNP Q9JJW6 ? ? 'expression tag' 41 2 1 2YKA SER A 3 ? UNP Q9JJW6 ? ? 'expression tag' 42 3 1 2YKA MET A 4 ? UNP Q9JJW6 ? ? 'expression tag' 43 4 1 2YKA THR A 5 ? UNP Q9JJW6 ? ? 'expression tag' 44 5 1 2YKA GLY A 6 ? UNP Q9JJW6 ? ? 'expression tag' 45 6 1 2YKA GLY A 7 ? UNP Q9JJW6 ? ? 'expression tag' 46 7 1 2YKA GLN A 8 ? UNP Q9JJW6 ? ? 'expression tag' 47 8 1 2YKA GLN A 9 ? UNP Q9JJW6 ? ? 'expression tag' 48 9 1 2YKA MET A 10 ? UNP Q9JJW6 ? ? 'expression tag' 49 10 1 2YKA GLY A 11 ? UNP Q9JJW6 ? ? 'expression tag' 50 11 1 2YKA ARG A 12 ? UNP Q9JJW6 ? ? 'expression tag' 51 12 1 2YKA ASP A 13 ? UNP Q9JJW6 ? ? 'expression tag' 52 13 1 2YKA LEU A 117 ? UNP Q9JJW6 ? ? 'expression tag' 156 14 1 2YKA GLU A 118 ? UNP Q9JJW6 ? ? 'expression tag' 157 15 1 2YKA HIS A 119 ? UNP Q9JJW6 ? ? 'expression tag' 158 16 1 2YKA HIS A 120 ? UNP Q9JJW6 ? ? 'expression tag' 159 17 1 2YKA HIS A 121 ? UNP Q9JJW6 ? ? 'expression tag' 160 18 1 2YKA HIS A 122 ? UNP Q9JJW6 ? ? 'expression tag' 161 19 1 2YKA HIS A 123 ? UNP Q9JJW6 ? ? 'expression tag' 162 20 1 2YKA HIS A 124 ? UNP Q9JJW6 ? ? 'expression tag' 163 21 2 2YKA GLY B 1 ? UNP P13199 ? ? 'expression tag' 98 22 2 2YKA PRO B 2 ? UNP P13199 ? ? 'expression tag' 99 23 2 2YKA LEU B 3 ? UNP P13199 ? ? 'expression tag' 100 24 2 2YKA GLY B 4 ? UNP P13199 ? ? 'expression tag' 101 25 2 2YKA SER B 5 ? UNP P13199 ? ? 'expression tag' 102 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 HSQC 1 2 1 HNCA 1 3 1 'CBCA(CO)NH' 1 4 1 HNCACB 1 5 1 HNCO 1 6 1 'HN(CA)CO' 1 7 1 TOCSY-HSQC 1 8 1 'HBHA(CO)NH' 1 9 1 HCCH-TOCSY 1 10 1 CCH-TOCSY 1 11 1 'NOESY-HSQC HSQC' 1 12 1 HNCA 1 13 1 'CBCA(CO)NH' 1 14 1 HNCACB 1 15 1 HNCO 1 16 1 'TOCSY- HSQC' 1 17 1 'HBHA(CO)NH' 1 18 1 'NOESY- HSQC' 1 19 1 'FILTERED 13C- NOESY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303.0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1.0 _pdbx_nmr_exptl_sample_conditions.pH 6.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '90% WATER/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 DRX Bruker 600 2 INOVA Varian 800 # _pdbx_nmr_refine.entry_id 2YKA _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2YKA _pdbx_nmr_details.text NONE # _pdbx_nmr_ensemble.entry_id 2YKA _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' # _pdbx_nmr_representative.entry_id 2YKA _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CYANA 2.1 'P. GUNTERT ET AL.' 1 'structure solution' CYANA 2.1 ? 2 # _exptl.entry_id 2YKA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2YKA _struct.title 'RRM domain of mRNA export adaptor REF2-I bound to HVS ORF57 peptide' _struct.pdbx_descriptor 'RNA AND EXPORT FACTOR-BINDING PROTEIN 2, 52 KDA IMMEDIATE-EARLY PHOSPHOPROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YKA _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/TRANSCRIPTION' _struct_keywords.text 'RNA BINDING PROTEIN-TRANSCRIPTION COMPLEX, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 48 ? GLU A 58 ? SER A 87 GLU A 97 1 ? 11 HELX_P HELX_P2 2 ARG A 85 ? LYS A 97 ? ARG A 124 LYS A 136 1 ? 13 HELX_P HELX_P3 3 SER B 10 ? ARG B 22 ? SER B 107 ARG B 119 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 62 ? TYR A 69 ? LEU A 101 TYR A 108 AA 2 SER A 75 ? PHE A 83 ? SER A 114 PHE A 122 AA 3 ALA A 36 ? SER A 41 ? ALA A 75 SER A 80 AA 4 ASP A 107 ? VAL A 111 ? ASP A 146 VAL A 150 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 O ASP A 68 ? O ASP A 107 N LEU A 76 ? N LEU A 115 AA 2 3 N PHE A 83 ? N PHE A 122 O ALA A 36 ? O ALA A 75 AA 3 4 N SER A 41 ? N SER A 80 O ASP A 107 ? O ASP A 146 # _database_PDB_matrix.entry_id 2YKA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YKA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 40 40 MET MET A . n A 1 2 ALA 2 41 41 ALA ALA A . n A 1 3 SER 3 42 42 SER SER A . n A 1 4 MET 4 43 43 MET MET A . n A 1 5 THR 5 44 44 THR THR A . n A 1 6 GLY 6 45 45 GLY GLY A . n A 1 7 GLY 7 46 46 GLY GLY A . n A 1 8 GLN 8 47 47 GLN GLN A . n A 1 9 GLN 9 48 48 GLN GLN A . n A 1 10 MET 10 49 49 MET MET A . n A 1 11 GLY 11 50 50 GLY GLY A . n A 1 12 ARG 12 51 51 ARG ARG A . n A 1 13 ASP 13 52 52 ASP ASP A . n A 1 14 PRO 14 53 53 PRO PRO A . n A 1 15 ASP 15 54 54 ASP ASP A . n A 1 16 LYS 16 55 55 LYS LYS A . n A 1 17 TRP 17 56 56 TRP TRP A . n A 1 18 GLN 18 57 57 GLN GLN A . n A 1 19 HIS 19 58 58 HIS HIS A . n A 1 20 ASP 20 59 59 ASP ASP A . n A 1 21 LEU 21 60 60 LEU LEU A . n A 1 22 PHE 22 61 61 PHE PHE A . n A 1 23 ASP 23 62 62 ASP ASP A . n A 1 24 SER 24 63 63 SER SER A . n A 1 25 GLY 25 64 64 GLY GLY A . n A 1 26 CYS 26 65 65 CYS CYS A . n A 1 27 GLY 27 66 66 GLY GLY A . n A 1 28 GLY 28 67 67 GLY GLY A . n A 1 29 GLY 29 68 68 GLY GLY A . n A 1 30 GLU 30 69 69 GLU GLU A . n A 1 31 GLY 31 70 70 GLY GLY A . n A 1 32 VAL 32 71 71 VAL VAL A . n A 1 33 GLU 33 72 72 GLU GLU A . n A 1 34 THR 34 73 73 THR THR A . n A 1 35 GLY 35 74 74 GLY GLY A . n A 1 36 ALA 36 75 75 ALA ALA A . n A 1 37 LYS 37 76 76 LYS LYS A . n A 1 38 LEU 38 77 77 LEU LEU A . n A 1 39 LEU 39 78 78 LEU LEU A . n A 1 40 VAL 40 79 79 VAL VAL A . n A 1 41 SER 41 80 80 SER SER A . n A 1 42 ASN 42 81 81 ASN ASN A . n A 1 43 LEU 43 82 82 LEU LEU A . n A 1 44 ASP 44 83 83 ASP ASP A . n A 1 45 PHE 45 84 84 PHE PHE A . n A 1 46 GLY 46 85 85 GLY GLY A . n A 1 47 VAL 47 86 86 VAL VAL A . n A 1 48 SER 48 87 87 SER SER A . n A 1 49 ASP 49 88 88 ASP ASP A . n A 1 50 ALA 50 89 89 ALA ALA A . n A 1 51 ASP 51 90 90 ASP ASP A . n A 1 52 ILE 52 91 91 ILE ILE A . n A 1 53 GLN 53 92 92 GLN GLN A . n A 1 54 GLU 54 93 93 GLU GLU A . n A 1 55 LEU 55 94 94 LEU LEU A . n A 1 56 PHE 56 95 95 PHE PHE A . n A 1 57 ALA 57 96 96 ALA ALA A . n A 1 58 GLU 58 97 97 GLU GLU A . n A 1 59 PHE 59 98 98 PHE PHE A . n A 1 60 GLY 60 99 99 GLY GLY A . n A 1 61 THR 61 100 100 THR THR A . n A 1 62 LEU 62 101 101 LEU LEU A . n A 1 63 LYS 63 102 102 LYS LYS A . n A 1 64 LYS 64 103 103 LYS LYS A . n A 1 65 ALA 65 104 104 ALA ALA A . n A 1 66 ALA 66 105 105 ALA ALA A . n A 1 67 VAL 67 106 106 VAL VAL A . n A 1 68 ASP 68 107 107 ASP ASP A . n A 1 69 TYR 69 108 108 TYR TYR A . n A 1 70 ASP 70 109 109 ASP ASP A . n A 1 71 ARG 71 110 110 ARG ARG A . n A 1 72 SER 72 111 111 SER SER A . n A 1 73 GLY 73 112 112 GLY GLY A . n A 1 74 ARG 74 113 113 ARG ARG A . n A 1 75 SER 75 114 114 SER SER A . n A 1 76 LEU 76 115 115 LEU LEU A . n A 1 77 GLY 77 116 116 GLY GLY A . n A 1 78 THR 78 117 117 THR THR A . n A 1 79 ALA 79 118 118 ALA ALA A . n A 1 80 ASP 80 119 119 ASP ASP A . n A 1 81 VAL 81 120 120 VAL VAL A . n A 1 82 HIS 82 121 121 HIS HIS A . n A 1 83 PHE 83 122 122 PHE PHE A . n A 1 84 GLU 84 123 123 GLU GLU A . n A 1 85 ARG 85 124 124 ARG ARG A . n A 1 86 ARG 86 125 125 ARG ARG A . n A 1 87 ALA 87 126 126 ALA ALA A . n A 1 88 ASP 88 127 127 ASP ASP A . n A 1 89 ALA 89 128 128 ALA ALA A . n A 1 90 LEU 90 129 129 LEU LEU A . n A 1 91 LYS 91 130 130 LYS LYS A . n A 1 92 ALA 92 131 131 ALA ALA A . n A 1 93 MET 93 132 132 MET MET A . n A 1 94 LYS 94 133 133 LYS LYS A . n A 1 95 GLN 95 134 134 GLN GLN A . n A 1 96 TYR 96 135 135 TYR TYR A . n A 1 97 LYS 97 136 136 LYS LYS A . n A 1 98 GLY 98 137 137 GLY GLY A . n A 1 99 VAL 99 138 138 VAL VAL A . n A 1 100 PRO 100 139 139 PRO PRO A . n A 1 101 LEU 101 140 140 LEU LEU A . n A 1 102 ASP 102 141 141 ASP ASP A . n A 1 103 GLY 103 142 142 GLY GLY A . n A 1 104 ARG 104 143 143 ARG ARG A . n A 1 105 PRO 105 144 144 PRO PRO A . n A 1 106 MET 106 145 145 MET MET A . n A 1 107 ASP 107 146 146 ASP ASP A . n A 1 108 ILE 108 147 147 ILE ILE A . n A 1 109 GLN 109 148 148 GLN GLN A . n A 1 110 LEU 110 149 149 LEU LEU A . n A 1 111 VAL 111 150 150 VAL VAL A . n A 1 112 ALA 112 151 151 ALA ALA A . n A 1 113 SER 113 152 152 SER SER A . n A 1 114 GLN 114 153 153 GLN GLN A . n A 1 115 ILE 115 154 154 ILE ILE A . n A 1 116 ASP 116 155 155 ASP ASP A . n A 1 117 LEU 117 156 156 LEU LEU A . n A 1 118 GLU 118 157 157 GLU GLU A . n A 1 119 HIS 119 158 158 HIS HIS A . n A 1 120 HIS 120 159 159 HIS HIS A . n A 1 121 HIS 121 160 160 HIS HIS A . n A 1 122 HIS 122 161 161 HIS HIS A . n A 1 123 HIS 123 162 162 HIS HIS A . n A 1 124 HIS 124 163 163 HIS HIS A . n B 2 1 GLY 1 98 98 GLY GLY B . n B 2 2 PRO 2 99 99 PRO PRO B . n B 2 3 LEU 3 100 100 LEU LEU B . n B 2 4 GLY 4 101 101 GLY GLY B . n B 2 5 SER 5 102 102 SER SER B . n B 2 6 SER 6 103 103 SER SER B . n B 2 7 CYS 7 104 104 CYS CYS B . n B 2 8 LYS 8 105 105 LYS LYS B . n B 2 9 THR 9 106 106 THR THR B . n B 2 10 SER 10 107 107 SER SER B . n B 2 11 TRP 11 108 108 TRP TRP B . n B 2 12 ALA 12 109 109 ALA ALA B . n B 2 13 ASP 13 110 110 ASP ASP B . n B 2 14 ARG 14 111 111 ARG ARG B . n B 2 15 VAL 15 112 112 VAL VAL B . n B 2 16 ARG 16 113 113 ARG ARG B . n B 2 17 GLU 17 114 114 GLU GLU B . n B 2 18 ALA 18 115 115 ALA ALA B . n B 2 19 ALA 19 116 116 ALA ALA B . n B 2 20 ALA 20 117 117 ALA ALA B . n B 2 21 GLN 21 118 118 GLN GLN B . n B 2 22 ARG 22 119 119 ARG ARG B . n B 2 23 ARG 23 120 120 ARG ARG B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-13 2 'Structure model' 1 1 2014-02-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_entry_details.entry_id 2YKA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;REF2-I RESIDUES 54-155. N-TERMINAL SEQUENCE MASMTGGQQMGRDP AND C-TERMINAL LEHHHHHH FROM CLONING. HVS ORF57 RESIDUES 103-120. N-TERMINAL SEQUENCE GPLGS FROM CLONING. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 47 ? ? -163.46 118.23 2 1 THR A 73 ? ? -140.44 39.44 3 1 ASP A 83 ? ? -55.55 177.53 4 1 THR B 106 ? ? -55.93 174.31 5 2 GLN A 47 ? ? -101.06 66.73 6 2 HIS A 58 ? ? -109.04 41.73 7 2 SER A 63 ? ? -164.39 84.80 8 2 THR A 73 ? ? -163.18 26.24 9 2 ASP A 83 ? ? -57.55 177.29 10 2 GLU A 157 ? ? -95.85 33.43 11 2 PRO B 99 ? ? -69.75 80.96 12 3 THR A 73 ? ? -160.35 24.55 13 3 ASP A 83 ? ? -54.95 177.46 14 3 PRO B 99 ? ? -69.75 -173.56 15 3 SER B 102 ? ? -96.69 37.24 16 4 SER A 63 ? ? -100.93 49.65 17 4 GLU A 72 ? ? -89.77 47.86 18 4 THR A 73 ? ? -156.68 22.88 19 4 ASP A 83 ? ? -55.34 177.57 20 4 THR B 106 ? ? -58.75 174.49 21 5 GLN A 47 ? ? -170.07 124.48 22 5 GLU A 72 ? ? -94.89 41.71 23 5 THR A 73 ? ? -153.96 30.96 24 5 ASP A 83 ? ? -55.39 177.53 25 5 ASP A 155 ? ? 61.05 63.71 26 5 HIS A 160 ? ? -113.59 61.97 27 5 LYS B 105 ? ? -69.13 -75.87 28 5 SER B 107 ? ? -60.88 -170.35 29 6 THR A 44 ? ? -170.72 143.70 30 6 GLN A 47 ? ? -174.06 120.91 31 6 MET A 49 ? ? -66.51 -177.98 32 6 LEU A 60 ? ? -92.68 33.86 33 6 GLU A 72 ? ? -90.42 47.32 34 6 THR A 73 ? ? -151.19 20.04 35 6 ASP A 83 ? ? -56.40 177.31 36 6 GLU A 157 ? ? -60.23 -71.19 37 6 HIS A 159 ? ? -173.79 137.24 38 6 HIS A 160 ? ? -61.26 -179.41 39 6 PRO B 99 ? ? -69.72 86.21 40 7 LEU A 60 ? ? -92.18 33.67 41 7 GLU A 72 ? ? -95.34 36.54 42 7 ASP A 83 ? ? -54.89 177.26 43 7 ASP A 109 ? ? -103.19 -169.77 44 7 GLU A 157 ? ? -95.79 32.83 45 7 SER B 103 ? ? -113.90 63.85 46 7 LYS B 105 ? ? -59.60 -172.37 47 7 THR B 106 ? ? -59.35 175.22 48 7 SER B 107 ? ? -60.82 -170.20 49 7 ARG B 119 ? ? -94.14 55.04 50 8 ALA A 41 ? ? -107.97 48.24 51 8 LYS A 55 ? ? -97.38 39.27 52 8 GLU A 72 ? ? -94.98 37.65 53 8 THR A 73 ? ? -152.52 40.63 54 8 ASP A 83 ? ? -54.77 177.31 55 9 GLN A 47 ? ? -172.47 124.75 56 9 GLU A 72 ? ? -92.59 47.29 57 9 THR A 73 ? ? -144.22 14.46 58 9 ASP A 83 ? ? -55.11 177.33 59 9 SER A 152 ? ? -140.80 40.02 60 9 SER B 107 ? ? -65.96 -173.44 61 9 ARG B 119 ? ? -95.88 33.54 62 10 HIS A 58 ? ? -99.16 37.85 63 10 GLU A 72 ? ? -97.61 48.97 64 10 THR A 73 ? ? -149.10 17.61 65 10 ASP A 83 ? ? -55.61 177.61 66 10 LEU B 100 ? ? -171.41 127.18 67 11 THR A 44 ? ? -174.74 130.36 68 11 GLN A 48 ? ? -105.22 43.09 69 11 GLN A 57 ? ? -116.16 67.77 70 11 ASP A 62 ? ? -116.99 65.85 71 11 GLU A 72 ? ? -95.55 36.91 72 11 THR A 73 ? ? -148.29 38.74 73 11 ASP A 83 ? ? -55.25 177.62 74 11 ILE A 154 ? ? -130.45 -57.80 75 11 ASP A 155 ? ? -174.54 101.31 76 11 THR B 106 ? ? -55.52 175.29 77 11 SER B 107 ? ? -63.26 -178.56 78 12 HIS A 58 ? ? -143.58 38.81 79 12 SER A 63 ? ? -101.84 64.28 80 12 GLU A 72 ? ? -104.43 49.20 81 12 THR A 73 ? ? -146.66 15.80 82 12 ASP A 83 ? ? -54.81 177.60 83 12 SER B 102 ? ? -175.69 147.14 84 12 THR B 106 ? ? -56.76 170.80 85 13 SER A 42 ? ? -104.51 -67.65 86 13 GLN A 47 ? ? -117.62 72.28 87 13 SER A 63 ? ? -98.77 -73.56 88 13 GLU A 69 ? ? -65.91 -169.63 89 13 THR A 73 ? ? -164.29 26.20 90 13 ASP A 83 ? ? -53.43 174.11 91 13 LEU B 100 ? ? -167.03 118.37 92 13 THR B 106 ? ? -56.56 176.74 93 14 GLN A 47 ? ? -162.37 104.67 94 14 THR A 73 ? ? -147.01 42.03 95 14 ASP A 83 ? ? -54.20 176.18 96 14 ASP A 155 ? ? -173.68 144.54 97 15 GLN A 47 ? ? -119.77 72.80 98 15 GLN A 57 ? ? -100.81 41.66 99 15 SER A 63 ? ? -103.68 53.68 100 15 CYS A 65 ? ? 32.72 50.21 101 15 THR A 73 ? ? -160.77 25.60 102 15 ASP A 83 ? ? -57.76 175.98 103 15 SER A 114 ? ? -51.88 109.35 104 15 HIS A 161 ? ? -112.40 58.18 105 15 PRO B 99 ? ? -69.84 -173.17 106 16 ALA A 41 ? ? -73.41 -74.66 107 16 TRP A 56 ? ? -65.94 -179.85 108 16 CYS A 65 ? ? 63.29 61.44 109 16 THR A 73 ? ? 36.48 59.29 110 16 ASP A 83 ? ? -52.03 171.58 111 16 HIS A 160 ? ? -102.36 59.75 112 16 PRO B 99 ? ? -69.73 90.03 113 17 TRP A 56 ? ? -58.37 177.20 114 17 SER A 63 ? ? -172.12 90.74 115 17 THR A 73 ? ? -115.81 59.58 116 17 ASP A 83 ? ? -55.23 177.49 117 17 THR B 106 ? ? -56.59 176.08 118 18 GLN A 47 ? ? -164.82 109.30 119 18 SER A 63 ? ? -177.59 97.57 120 18 GLU A 72 ? ? -97.77 38.49 121 18 THR A 73 ? ? -148.34 36.16 122 18 ASP A 83 ? ? -54.26 176.07 123 18 ASP A 155 ? ? -64.33 94.70 124 19 MET A 43 ? ? -165.43 116.36 125 19 GLN A 47 ? ? -118.98 53.96 126 19 LYS A 55 ? ? -93.89 40.37 127 19 HIS A 58 ? ? -113.07 71.93 128 19 ASP A 83 ? ? -55.56 177.59 129 19 HIS A 162 ? ? -104.73 48.83 130 19 LEU B 100 ? ? -65.34 91.34 131 19 SER B 102 ? ? -93.77 42.41 132 19 LYS B 105 ? ? -107.86 -76.19 133 19 SER B 107 ? ? -69.34 -178.80 134 19 ARG B 119 ? ? -95.79 33.18 135 20 THR A 73 ? ? -146.71 49.62 136 20 ASP A 83 ? ? -54.98 177.53 137 20 ILE A 154 ? ? -132.17 -49.41 138 20 HIS A 161 ? ? -53.92 171.54 139 20 HIS A 162 ? ? -106.10 -72.04 140 20 CYS B 104 ? ? -76.63 -71.45 141 20 LYS B 105 ? ? -54.02 -76.02 142 20 ARG B 119 ? ? -94.93 51.80 #