HEADER CELL ADHESION 30-MAR-07 2YQG TITLE SOLUTION STRUCTURE OF THE FIRST CADHERIN DOMAIN FROM HUMAN DESMOGLEIN- TITLE 2 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESMOGLEIN-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CADHERIN, UNP RESIDUES 47-162; COMPND 5 SYNONYM: HDGC; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DSG2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060522-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CADHERIN, HDGC, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YQG 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YQG 1 VERSN REVDAT 1 02-OCT-07 2YQG 0 JRNL AUTH R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST CADHERIN DOMAIN FROM HUMAN JRNL TITL 2 DESMOGLEIN-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027004. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.20MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 12 44.47 35.47 REMARK 500 1 LYS A 27 -59.47 -127.64 REMARK 500 1 LYS A 33 117.22 -175.11 REMARK 500 1 ILE A 62 -59.23 -130.47 REMARK 500 1 ALA A 92 79.79 -112.98 REMARK 500 1 LYS A 102 146.63 -35.82 REMARK 500 1 PRO A 103 -171.84 -69.74 REMARK 500 1 ASN A 114 40.84 -105.18 REMARK 500 2 SER A 3 42.59 -93.79 REMARK 500 2 ALA A 32 122.54 -174.54 REMARK 500 2 ARG A 42 -73.77 -100.30 REMARK 500 2 LYS A 53 137.45 -39.51 REMARK 500 2 LYS A 102 150.82 -38.69 REMARK 500 2 PHE A 120 119.80 -39.17 REMARK 500 3 SER A 3 42.82 -95.04 REMARK 500 3 ALA A 11 46.73 39.23 REMARK 500 3 ASP A 37 -70.26 -73.04 REMARK 500 3 ILE A 62 -60.61 -103.94 REMARK 500 3 LYS A 67 33.95 -99.34 REMARK 500 3 ALA A 92 66.02 -100.01 REMARK 500 3 ASN A 99 99.48 -69.51 REMARK 500 3 GLU A 117 140.65 -35.05 REMARK 500 3 VAL A 119 34.42 -99.64 REMARK 500 4 TRP A 12 47.91 -80.50 REMARK 500 4 LEU A 25 56.16 -107.80 REMARK 500 4 ASN A 29 153.17 -43.86 REMARK 500 4 ILE A 34 42.72 38.73 REMARK 500 4 LEU A 38 -36.50 -39.93 REMARK 500 4 ILE A 55 -70.01 -102.44 REMARK 500 4 ASP A 68 -72.43 -56.67 REMARK 500 4 LEU A 78 164.74 -49.80 REMARK 500 4 GLU A 82 -62.96 -94.68 REMARK 500 4 ASN A 99 54.61 72.85 REMARK 500 4 VAL A 100 -35.57 -34.88 REMARK 500 4 PRO A 103 -174.24 -69.75 REMARK 500 5 ILE A 46 133.40 -33.24 REMARK 500 5 GLU A 81 -38.91 -34.61 REMARK 500 5 ALA A 95 -73.42 -130.27 REMARK 500 5 ASN A 99 107.90 -35.57 REMARK 500 5 PRO A 103 -176.07 -69.69 REMARK 500 5 PHE A 120 45.97 -107.97 REMARK 500 5 GLN A 122 102.45 -56.26 REMARK 500 6 ASN A 29 151.42 -35.22 REMARK 500 6 SER A 36 -177.02 -59.58 REMARK 500 6 LEU A 78 152.96 -38.69 REMARK 500 6 PHE A 86 59.70 -102.15 REMARK 500 6 THR A 89 110.17 -160.37 REMARK 500 6 ASN A 99 77.89 -66.97 REMARK 500 6 GLU A 105 48.02 33.79 REMARK 500 6 LEU A 111 -177.18 -64.38 REMARK 500 REMARK 500 THIS ENTRY HAS 198 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001728.1 RELATED DB: TARGETDB DBREF 2YQG A 8 123 UNP Q14126 DSG2_HUMAN 47 162 SEQADV 2YQG GLY A 1 UNP Q14126 EXPRESSION TAG SEQADV 2YQG SER A 2 UNP Q14126 EXPRESSION TAG SEQADV 2YQG SER A 3 UNP Q14126 EXPRESSION TAG SEQADV 2YQG GLY A 4 UNP Q14126 EXPRESSION TAG SEQADV 2YQG SER A 5 UNP Q14126 EXPRESSION TAG SEQADV 2YQG SER A 6 UNP Q14126 EXPRESSION TAG SEQADV 2YQG GLY A 7 UNP Q14126 EXPRESSION TAG SEQRES 1 A 123 GLY SER SER GLY SER SER GLY GLN LYS ARG ALA TRP ILE SEQRES 2 A 123 THR ALA PRO VAL ALA LEU ARG GLU GLY GLU ASP LEU SER SEQRES 3 A 123 LYS LYS ASN PRO ILE ALA LYS ILE HIS SER ASP LEU ALA SEQRES 4 A 123 GLU GLU ARG GLY LEU LYS ILE THR TYR LYS TYR THR GLY SEQRES 5 A 123 LYS GLY ILE THR GLU PRO PRO PHE GLY ILE PHE VAL PHE SEQRES 6 A 123 ASN LYS ASP THR GLY GLU LEU ASN VAL THR SER ILE LEU SEQRES 7 A 123 ASP ARG GLU GLU THR PRO PHE PHE LEU LEU THR GLY TYR SEQRES 8 A 123 ALA LEU ASP ALA ARG GLY ASN ASN VAL GLU LYS PRO LEU SEQRES 9 A 123 GLU LEU ARG ILE LYS VAL LEU ASP ILE ASN ASP ASN GLU SEQRES 10 A 123 PRO VAL PHE THR GLN ASP HELIX 1 1 ASP A 37 GLY A 43 1 7 SHEET 1 A 4 VAL A 17 ARG A 20 0 SHEET 2 A 4 ARG A 107 LEU A 111 1 O LEU A 111 N LEU A 19 SHEET 3 A 4 PHE A 85 LEU A 93 -1 N PHE A 86 O ILE A 108 SHEET 4 A 4 THR A 47 GLY A 52 -1 N THR A 47 O LEU A 93 SHEET 1 B 4 VAL A 17 ARG A 20 0 SHEET 2 B 4 ARG A 107 LEU A 111 1 O LEU A 111 N LEU A 19 SHEET 3 B 4 PHE A 85 LEU A 93 -1 N PHE A 86 O ILE A 108 SHEET 4 B 4 ASN A 99 LEU A 104 -1 O LEU A 104 N GLY A 90 SHEET 1 C 2 PHE A 63 ASN A 66 0 SHEET 2 C 2 GLU A 71 VAL A 74 -1 O ASN A 73 N VAL A 64 CISPEP 1 ASN A 29 PRO A 30 1 -0.05 CISPEP 2 PRO A 58 PRO A 59 1 -0.05 CISPEP 3 ASN A 29 PRO A 30 2 -0.14 CISPEP 4 PRO A 58 PRO A 59 2 -0.04 CISPEP 5 ASN A 29 PRO A 30 3 -0.03 CISPEP 6 PRO A 58 PRO A 59 3 -0.05 CISPEP 7 ASN A 29 PRO A 30 4 -0.05 CISPEP 8 PRO A 58 PRO A 59 4 -0.10 CISPEP 9 ASN A 29 PRO A 30 5 -0.11 CISPEP 10 PRO A 58 PRO A 59 5 -0.03 CISPEP 11 ASN A 29 PRO A 30 6 -0.08 CISPEP 12 PRO A 58 PRO A 59 6 0.01 CISPEP 13 ASN A 29 PRO A 30 7 -0.03 CISPEP 14 PRO A 58 PRO A 59 7 0.03 CISPEP 15 ASN A 29 PRO A 30 8 -0.04 CISPEP 16 PRO A 58 PRO A 59 8 -0.13 CISPEP 17 ASN A 29 PRO A 30 9 -0.03 CISPEP 18 PRO A 58 PRO A 59 9 0.02 CISPEP 19 ASN A 29 PRO A 30 10 -0.02 CISPEP 20 PRO A 58 PRO A 59 10 -0.11 CISPEP 21 ASN A 29 PRO A 30 11 -0.03 CISPEP 22 PRO A 58 PRO A 59 11 -0.01 CISPEP 23 ASN A 29 PRO A 30 12 -0.08 CISPEP 24 PRO A 58 PRO A 59 12 -0.05 CISPEP 25 ASN A 29 PRO A 30 13 -0.18 CISPEP 26 PRO A 58 PRO A 59 13 -0.11 CISPEP 27 ASN A 29 PRO A 30 14 -0.04 CISPEP 28 PRO A 58 PRO A 59 14 -0.08 CISPEP 29 ASN A 29 PRO A 30 15 -0.02 CISPEP 30 PRO A 58 PRO A 59 15 -0.03 CISPEP 31 ASN A 29 PRO A 30 16 0.02 CISPEP 32 PRO A 58 PRO A 59 16 -0.03 CISPEP 33 ASN A 29 PRO A 30 17 -0.08 CISPEP 34 PRO A 58 PRO A 59 17 -0.04 CISPEP 35 ASN A 29 PRO A 30 18 0.07 CISPEP 36 PRO A 58 PRO A 59 18 -0.06 CISPEP 37 ASN A 29 PRO A 30 19 -0.10 CISPEP 38 PRO A 58 PRO A 59 19 -0.03 CISPEP 39 ASN A 29 PRO A 30 20 -0.03 CISPEP 40 PRO A 58 PRO A 59 20 -0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1