data_315D # _entry.id 315D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 315D pdb_0000315d 10.2210/pdb315d/pdb RCSB AHH077 ? ? WWPDB D_1000178783 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-09-23 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-21 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 315D _pdbx_database_status.recvd_initial_deposition_date 1997-02-26 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Biswas, R.' 1 'Wahl, M.C.' 2 'Ban, C.' 3 'Sundaralingam, M.' 4 # _citation.id primary _citation.title 'Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G x U wobble pairs' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 267 _citation.page_first 1149 _citation.page_last 1156 _citation.year 1997 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9150403 _citation.pdbx_database_id_DOI 10.1006/jmbi.1997.0936 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Biswas, R.' 1 ? primary 'Wahl, M.C.' 2 ? primary 'Ban, C.' 3 ? primary 'Sundaralingam, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA/RNA (5'-R(*GP*UP*AP*UP*GP*UP*AP*)-D(*C)-3') ; 2511.545 2 ? ? ? ? 2 water nat water 18.015 69 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code 'GUAUGUA(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUAUGUAC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 A n 1 4 U n 1 5 G n 1 6 U n 1 7 A n 1 8 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 U 2 2 2 U U A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 DC 8 8 8 DC C A . n B 1 1 G 1 9 9 G G B . n B 1 2 U 2 10 10 U U B . n B 1 3 A 3 11 11 A A B . n B 1 4 U 4 12 12 U U B . n B 1 5 G 5 13 13 G G B . n B 1 6 U 6 14 14 U U B . n B 1 7 A 7 15 15 A A B . n B 1 8 DC 8 16 16 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 17 17 HOH HOH A . C 2 HOH 2 18 18 HOH HOH A . C 2 HOH 3 19 19 HOH HOH A . C 2 HOH 4 20 20 HOH HOH A . C 2 HOH 5 23 23 HOH HOH A . C 2 HOH 6 24 24 HOH HOH A . C 2 HOH 7 26 26 HOH HOH A . C 2 HOH 8 29 29 HOH HOH A . C 2 HOH 9 30 30 HOH HOH A . C 2 HOH 10 33 33 HOH HOH A . C 2 HOH 11 35 35 HOH HOH A . C 2 HOH 12 36 36 HOH HOH A . C 2 HOH 13 38 38 HOH HOH A . C 2 HOH 14 43 43 HOH HOH A . C 2 HOH 15 46 46 HOH HOH A . C 2 HOH 16 47 47 HOH HOH A . C 2 HOH 17 50 50 HOH HOH A . C 2 HOH 18 53 53 HOH HOH A . C 2 HOH 19 54 54 HOH HOH A . C 2 HOH 20 55 55 HOH HOH A . C 2 HOH 21 57 57 HOH HOH A . C 2 HOH 22 58 58 HOH HOH A . C 2 HOH 23 59 59 HOH HOH A . C 2 HOH 24 60 60 HOH HOH A . C 2 HOH 25 61 61 HOH HOH A . C 2 HOH 26 62 62 HOH HOH A . C 2 HOH 27 64 64 HOH HOH A . C 2 HOH 28 65 65 HOH HOH A . C 2 HOH 29 66 66 HOH HOH A . C 2 HOH 30 67 67 HOH HOH A . C 2 HOH 31 68 68 HOH HOH A . C 2 HOH 32 69 69 HOH HOH A . C 2 HOH 33 70 70 HOH HOH A . C 2 HOH 34 71 71 HOH HOH A . C 2 HOH 35 74 74 HOH HOH A . C 2 HOH 36 76 76 HOH HOH A . C 2 HOH 37 78 78 HOH HOH A . C 2 HOH 38 79 79 HOH HOH A . C 2 HOH 39 81 81 HOH HOH A . C 2 HOH 40 82 82 HOH HOH A . D 2 HOH 1 21 21 HOH HOH B . D 2 HOH 2 22 22 HOH HOH B . D 2 HOH 3 25 25 HOH HOH B . D 2 HOH 4 27 27 HOH HOH B . D 2 HOH 5 28 28 HOH HOH B . D 2 HOH 6 31 31 HOH HOH B . D 2 HOH 7 32 32 HOH HOH B . D 2 HOH 8 34 34 HOH HOH B . D 2 HOH 9 37 37 HOH HOH B . D 2 HOH 10 39 39 HOH HOH B . D 2 HOH 11 40 40 HOH HOH B . D 2 HOH 12 41 41 HOH HOH B . D 2 HOH 13 42 42 HOH HOH B . D 2 HOH 14 44 44 HOH HOH B . D 2 HOH 15 45 45 HOH HOH B . D 2 HOH 16 48 48 HOH HOH B . D 2 HOH 17 49 49 HOH HOH B . D 2 HOH 18 51 51 HOH HOH B . D 2 HOH 19 52 52 HOH HOH B . D 2 HOH 20 56 56 HOH HOH B . D 2 HOH 21 63 63 HOH HOH B . D 2 HOH 22 72 72 HOH HOH B . D 2 HOH 23 73 73 HOH HOH B . D 2 HOH 24 75 75 HOH HOH B . D 2 HOH 25 77 77 HOH HOH B . D 2 HOH 26 80 80 HOH HOH B . D 2 HOH 27 83 83 HOH HOH B . D 2 HOH 28 84 84 HOH HOH B . D 2 HOH 29 85 85 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.0 ? 1 XENGEN 'data reduction' 'V. 2.0' ? 2 # _cell.entry_id 315D _cell.length_a 39.710 _cell.length_b 39.710 _cell.length_c 68.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 315D _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # _exptl.entry_id 315D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.25 _exptl_crystal.density_Matthews 2.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 291.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 '[CO(NH3)6]3+' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 295.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type MACSCIENCE _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 315D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 1.500 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.380 _reflns.number_obs 5744 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0347000 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 315D _refine.ls_number_reflns_obs 4035 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.500 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.380 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1760000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1760000 _refine.ls_R_factor_R_free 0.2310000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model AHH071 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 332 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 401 _refine_hist.d_res_high 1.380 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.30 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.38 _refine_ls_shell.d_res_low 1.58 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 315D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 315D _struct.title 'CRYSTAL STRUCTURE OF AN ALTERNATING OCTAMER R(GUAUGUA)D(C) WITH ADJACENT G-U WOBBLE PAIRS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 315D _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'A-DNA/RNA, DOUBLE HELIX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 315D _struct_ref.pdbx_db_accession 315D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 315D A 1 ? 8 ? 315D 1 ? 8 ? 1 8 2 1 315D B 1 ? 8 ? 315D 9 ? 16 ? 9 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? A G 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? A G 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? A G 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A U 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A U 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 B G 5 O6 ? ? A U 4 B G 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A U 4 O2 ? ? ? 1_555 B G 5 N1 ? ? A U 4 B G 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 B U 4 O2 ? ? A G 5 B U 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A G 5 O6 ? ? ? 1_555 B U 4 N3 ? ? A G 5 B U 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 6 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 6 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 7 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 7 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A DC 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A DC 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A DC 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A A 7 ? ? P A DC 8 ? ? 1.524 1.607 -0.083 0.012 Y 2 1 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? 1.564 1.512 0.052 0.007 N 3 1 "C2'" B A 11 ? ? "O2'" B A 11 ? ? 1.483 1.420 0.063 0.010 N 4 1 P B DC 16 ? ? "O5'" B DC 16 ? ? 1.663 1.593 0.070 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 114.95 108.50 6.45 0.70 N 2 1 C2 A G 5 ? ? N3 A G 5 ? ? C4 A G 5 ? ? 115.01 111.90 3.11 0.50 N 3 1 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 116.24 108.50 7.74 0.70 N 4 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 110.90 108.30 2.60 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 79 ? C HOH . 2 1 A HOH 81 ? C HOH . 3 1 A HOH 82 ? C HOH . 4 1 B HOH 80 ? D HOH . 5 1 B HOH 83 ? D HOH . 6 1 B HOH 84 ? D HOH . 7 1 B HOH 85 ? D HOH . # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 G OP3 O N N 72 G P P N N 73 G OP1 O N N 74 G OP2 O N N 75 G "O5'" O N N 76 G "C5'" C N N 77 G "C4'" C N R 78 G "O4'" O N N 79 G "C3'" C N S 80 G "O3'" O N N 81 G "C2'" C N R 82 G "O2'" O N N 83 G "C1'" C N R 84 G N9 N Y N 85 G C8 C Y N 86 G N7 N Y N 87 G C5 C Y N 88 G C6 C N N 89 G O6 O N N 90 G N1 N N N 91 G C2 C N N 92 G N2 N N N 93 G N3 N N N 94 G C4 C Y N 95 G HOP3 H N N 96 G HOP2 H N N 97 G "H5'" H N N 98 G "H5''" H N N 99 G "H4'" H N N 100 G "H3'" H N N 101 G "HO3'" H N N 102 G "H2'" H N N 103 G "HO2'" H N N 104 G "H1'" H N N 105 G H8 H N N 106 G H1 H N N 107 G H21 H N N 108 G H22 H N N 109 HOH O O N N 110 HOH H1 H N N 111 HOH H2 H N N 112 U OP3 O N N 113 U P P N N 114 U OP1 O N N 115 U OP2 O N N 116 U "O5'" O N N 117 U "C5'" C N N 118 U "C4'" C N R 119 U "O4'" O N N 120 U "C3'" C N S 121 U "O3'" O N N 122 U "C2'" C N R 123 U "O2'" O N N 124 U "C1'" C N R 125 U N1 N N N 126 U C2 C N N 127 U O2 O N N 128 U N3 N N N 129 U C4 C N N 130 U O4 O N N 131 U C5 C N N 132 U C6 C N N 133 U HOP3 H N N 134 U HOP2 H N N 135 U "H5'" H N N 136 U "H5''" H N N 137 U "H4'" H N N 138 U "H3'" H N N 139 U "HO3'" H N N 140 U "H2'" H N N 141 U "HO2'" H N N 142 U "H1'" H N N 143 U H3 H N N 144 U H5 H N N 145 U H6 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 DC OP3 P sing N N 40 DC OP3 HOP3 sing N N 41 DC P OP1 doub N N 42 DC P OP2 sing N N 43 DC P "O5'" sing N N 44 DC OP2 HOP2 sing N N 45 DC "O5'" "C5'" sing N N 46 DC "C5'" "C4'" sing N N 47 DC "C5'" "H5'" sing N N 48 DC "C5'" "H5''" sing N N 49 DC "C4'" "O4'" sing N N 50 DC "C4'" "C3'" sing N N 51 DC "C4'" "H4'" sing N N 52 DC "O4'" "C1'" sing N N 53 DC "C3'" "O3'" sing N N 54 DC "C3'" "C2'" sing N N 55 DC "C3'" "H3'" sing N N 56 DC "O3'" "HO3'" sing N N 57 DC "C2'" "C1'" sing N N 58 DC "C2'" "H2'" sing N N 59 DC "C2'" "H2''" sing N N 60 DC "C1'" N1 sing N N 61 DC "C1'" "H1'" sing N N 62 DC N1 C2 sing N N 63 DC N1 C6 sing N N 64 DC C2 O2 doub N N 65 DC C2 N3 sing N N 66 DC N3 C4 doub N N 67 DC C4 N4 sing N N 68 DC C4 C5 sing N N 69 DC N4 H41 sing N N 70 DC N4 H42 sing N N 71 DC C5 C6 doub N N 72 DC C5 H5 sing N N 73 DC C6 H6 sing N N 74 G OP3 P sing N N 75 G OP3 HOP3 sing N N 76 G P OP1 doub N N 77 G P OP2 sing N N 78 G P "O5'" sing N N 79 G OP2 HOP2 sing N N 80 G "O5'" "C5'" sing N N 81 G "C5'" "C4'" sing N N 82 G "C5'" "H5'" sing N N 83 G "C5'" "H5''" sing N N 84 G "C4'" "O4'" sing N N 85 G "C4'" "C3'" sing N N 86 G "C4'" "H4'" sing N N 87 G "O4'" "C1'" sing N N 88 G "C3'" "O3'" sing N N 89 G "C3'" "C2'" sing N N 90 G "C3'" "H3'" sing N N 91 G "O3'" "HO3'" sing N N 92 G "C2'" "O2'" sing N N 93 G "C2'" "C1'" sing N N 94 G "C2'" "H2'" sing N N 95 G "O2'" "HO2'" sing N N 96 G "C1'" N9 sing N N 97 G "C1'" "H1'" sing N N 98 G N9 C8 sing Y N 99 G N9 C4 sing Y N 100 G C8 N7 doub Y N 101 G C8 H8 sing N N 102 G N7 C5 sing Y N 103 G C5 C6 sing N N 104 G C5 C4 doub Y N 105 G C6 O6 doub N N 106 G C6 N1 sing N N 107 G N1 C2 sing N N 108 G N1 H1 sing N N 109 G C2 N2 sing N N 110 G C2 N3 doub N N 111 G N2 H21 sing N N 112 G N2 H22 sing N N 113 G N3 C4 sing N N 114 HOH O H1 sing N N 115 HOH O H2 sing N N 116 U OP3 P sing N N 117 U OP3 HOP3 sing N N 118 U P OP1 doub N N 119 U P OP2 sing N N 120 U P "O5'" sing N N 121 U OP2 HOP2 sing N N 122 U "O5'" "C5'" sing N N 123 U "C5'" "C4'" sing N N 124 U "C5'" "H5'" sing N N 125 U "C5'" "H5''" sing N N 126 U "C4'" "O4'" sing N N 127 U "C4'" "C3'" sing N N 128 U "C4'" "H4'" sing N N 129 U "O4'" "C1'" sing N N 130 U "C3'" "O3'" sing N N 131 U "C3'" "C2'" sing N N 132 U "C3'" "H3'" sing N N 133 U "O3'" "HO3'" sing N N 134 U "C2'" "O2'" sing N N 135 U "C2'" "C1'" sing N N 136 U "C2'" "H2'" sing N N 137 U "O2'" "HO2'" sing N N 138 U "C1'" N1 sing N N 139 U "C1'" "H1'" sing N N 140 U N1 C2 sing N N 141 U N1 C6 sing N N 142 U C2 O2 doub N N 143 U C2 N3 sing N N 144 U N3 C4 sing N N 145 U N3 H3 sing N N 146 U C4 O4 doub N N 147 U C4 C5 sing N N 148 U C5 C6 doub N N 149 U C5 H5 sing N N 150 U C6 H6 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 315D 'double helix' 315D 'a-form double helix' 315D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B DC 8 1_555 -0.386 -0.197 -0.100 -1.991 -4.542 -2.309 1 A_G1:DC16_B A 1 ? B 16 ? 19 1 1 A U 2 1_555 B A 7 1_555 0.005 -0.174 -0.001 -3.297 -13.281 4.621 2 A_U2:A15_B A 2 ? B 15 ? 20 1 1 A A 3 1_555 B U 6 1_555 0.024 -0.154 0.221 -6.048 -12.872 0.280 3 A_A3:U14_B A 3 ? B 14 ? 20 1 1 A U 4 1_555 B G 5 1_555 2.308 -0.537 0.414 -6.887 -9.438 -2.409 4 A_U4:G13_B A 4 ? B 13 ? 28 ? 1 A G 5 1_555 B U 4 1_555 -2.442 -0.568 -0.184 -6.087 -9.057 -1.804 5 A_G5:U12_B A 5 ? B 12 ? 28 ? 1 A U 6 1_555 B A 3 1_555 0.089 -0.132 0.029 -6.568 -10.876 -0.912 6 A_U6:A11_B A 6 ? B 11 ? 20 1 1 A A 7 1_555 B U 2 1_555 -0.025 -0.197 0.073 -2.867 -7.111 3.780 7 A_A7:U10_B A 7 ? B 10 ? 20 1 1 A DC 8 1_555 B G 1 1_555 0.127 -0.157 0.019 0.517 -8.130 -1.826 8 A_DC8:G9_B A 8 ? B 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B DC 8 1_555 A U 2 1_555 B A 7 1_555 0.071 -1.750 3.420 -0.289 2.661 33.469 -3.477 -0.171 3.274 4.611 0.500 33.572 1 AA_G1U2:A15DC16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A U 2 1_555 B A 7 1_555 A A 3 1_555 B U 6 1_555 -0.280 -1.658 3.197 -1.957 12.275 32.403 -4.469 0.202 2.440 21.055 3.358 34.646 2 AA_U2A3:U14A15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A A 3 1_555 B U 6 1_555 A U 4 1_555 B G 5 1_555 -0.001 -1.267 3.457 1.128 4.236 38.895 -2.418 0.142 3.305 6.337 -1.688 39.131 3 AA_A3U4:G13U14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A U 4 1_555 B G 5 1_555 A G 5 1_555 B U 4 1_555 0.891 -2.884 3.036 4.118 8.876 11.351 -16.065 -1.098 0.845 37.082 -17.202 14.976 4 AA_U4G5:U12G13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A G 5 1_555 B U 4 1_555 A U 6 1_555 B A 3 1_555 -0.147 -1.631 3.479 0.177 0.914 39.688 -2.514 0.238 3.441 1.346 -0.261 39.698 5 AA_G5U6:A11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A U 6 1_555 B A 3 1_555 A A 7 1_555 B U 2 1_555 -0.207 -1.398 3.109 -0.582 11.504 31.055 -4.164 0.278 2.453 20.619 1.044 33.073 6 AA_U6A7:U10A11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A A 7 1_555 B U 2 1_555 A DC 8 1_555 B G 1 1_555 0.009 -1.219 3.372 0.532 4.754 32.686 -2.954 0.075 3.168 8.391 -0.938 33.025 7 AA_A7DC8:G9U10_BB A 7 ? B 10 ? A 8 ? B 9 ? # _pdbx_initial_refinement_model.accession_code 246D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details AHH071 # _atom_sites.entry_id 315D _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.025183 _atom_sites.fract_transf_matrix[1][2] 0.014539 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029078 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014674 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_