data_336D # _entry.id 336D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 336D pdb_0000336d 10.2210/pdb336d/pdb RCSB ZDF053 ? ? WWPDB D_1000178805 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-04-10 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 336D _pdbx_database_status.recvd_initial_deposition_date 1997-06-24 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohishi, H.' 1 'Terasoma, N.' 2 'Nakanishi, I.' 3 'Van Der Marel, G.' 4 'Van Boom, J.H.' 5 'Rich, A.' 6 'Wang, A.H.-J.' 7 'Hakoshima, T.' 8 'Tomita, K.-I.' 9 # _citation.id primary _citation.title 'Interaction between left-handed Z-DNA and polyamine - 3. The crystal structure of the d(CG)3 and thermospermine complex.' _citation.journal_abbrev 'FEBS Lett.' _citation.journal_volume 398 _citation.page_first 291 _citation.page_last 296 _citation.year 1996 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8977125 _citation.pdbx_database_id_DOI '10.1016/S0014-5793(96)01225-2' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohishi, H.' 1 ? primary 'Terasoma, N.' 2 ? primary 'Nakanishi, I.' 3 ? primary 'van der Marel, G.' 4 ? primary 'van Boom, J.H.' 5 ? primary 'Rich, A.' 6 ? primary 'Wang, A.H.' 7 ? primary 'Hakoshima, T.' 8 ? primary 'Tomita, K.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; 1810.205 2 ? ? ? ? 2 non-polymer syn 'N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE' 202.340 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 72 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE' TER 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TER non-polymer . 'N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE' 'THERMOSPERMINE; PA(334)' 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TER 1 13 13 TER TER A . D 2 TER 1 14 14 TER TER A . E 3 MG 1 15 15 MG MO6 B . F 3 MG 1 16 16 MG MO6 B . G 4 HOH 1 19 19 HOH HOH A . G 4 HOH 2 20 20 HOH HOH A . G 4 HOH 3 21 21 HOH HOH A . G 4 HOH 4 22 22 HOH HOH A . G 4 HOH 5 23 23 HOH HOH A . G 4 HOH 6 24 24 HOH HOH A . G 4 HOH 7 27 27 HOH HOH A . G 4 HOH 8 28 28 HOH HOH A . G 4 HOH 9 29 29 HOH HOH A . G 4 HOH 10 31 31 HOH HOH A . G 4 HOH 11 32 32 HOH HOH A . G 4 HOH 12 33 33 HOH HOH A . G 4 HOH 13 35 35 HOH HOH A . G 4 HOH 14 36 36 HOH HOH A . G 4 HOH 15 39 39 HOH HOH A . G 4 HOH 16 41 41 HOH HOH A . G 4 HOH 17 42 42 HOH HOH A . G 4 HOH 18 43 43 HOH HOH A . G 4 HOH 19 46 46 HOH HOH A . G 4 HOH 20 47 47 HOH HOH A . G 4 HOH 21 48 48 HOH HOH A . G 4 HOH 22 49 49 HOH HOH A . G 4 HOH 23 51 51 HOH HOH A . G 4 HOH 24 52 52 HOH HOH A . G 4 HOH 25 53 53 HOH HOH A . G 4 HOH 26 55 55 HOH HOH A . G 4 HOH 27 56 56 HOH HOH A . G 4 HOH 28 61 61 HOH HOH A . G 4 HOH 29 62 62 HOH HOH A . G 4 HOH 30 63 63 HOH HOH A . G 4 HOH 31 64 64 HOH HOH A . G 4 HOH 32 65 65 HOH HOH A . G 4 HOH 33 66 66 HOH HOH A . G 4 HOH 34 67 67 HOH HOH A . G 4 HOH 35 69 69 HOH HOH A . G 4 HOH 36 74 74 HOH HOH A . G 4 HOH 37 75 75 HOH HOH A . G 4 HOH 38 76 76 HOH HOH A . G 4 HOH 39 77 77 HOH HOH A . G 4 HOH 40 78 78 HOH HOH A . G 4 HOH 41 81 15 HOH MO6 A . G 4 HOH 42 83 15 HOH MO6 A . G 4 HOH 43 85 16 HOH MO6 A . H 4 HOH 1 17 17 HOH HOH B . H 4 HOH 2 18 18 HOH HOH B . H 4 HOH 3 25 25 HOH HOH B . H 4 HOH 4 26 26 HOH HOH B . H 4 HOH 5 30 30 HOH HOH B . H 4 HOH 6 34 34 HOH HOH B . H 4 HOH 7 37 37 HOH HOH B . H 4 HOH 8 38 38 HOH HOH B . H 4 HOH 9 40 40 HOH HOH B . H 4 HOH 10 44 44 HOH HOH B . H 4 HOH 11 45 45 HOH HOH B . H 4 HOH 12 50 50 HOH HOH B . H 4 HOH 13 54 54 HOH HOH B . H 4 HOH 14 57 57 HOH HOH B . H 4 HOH 15 58 58 HOH HOH B . H 4 HOH 16 59 59 HOH HOH B . H 4 HOH 17 60 60 HOH HOH B . H 4 HOH 18 68 68 HOH HOH B . H 4 HOH 19 70 70 HOH HOH B . H 4 HOH 20 71 71 HOH HOH B . H 4 HOH 21 72 72 HOH HOH B . H 4 HOH 22 73 73 HOH HOH B . H 4 HOH 23 79 79 HOH HOH B . H 4 HOH 24 80 15 HOH MO6 B . H 4 HOH 25 82 15 HOH MO6 B . H 4 HOH 26 84 15 HOH MO6 B . H 4 HOH 27 86 16 HOH MO6 B . H 4 HOH 28 87 16 HOH MO6 B . H 4 HOH 29 88 16 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement . ? 2 # _cell.entry_id 336D _cell.length_a 17.980 _cell.length_b 31.510 _cell.length_c 44.380 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 336D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 336D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.74 _exptl_crystal.density_percent_sol 29.16 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 2 THERMOSPERMINE_HCL ? ? ? 1 3 3 MGCL2 ? ? ? 1 4 4 'NA CACODYLATE' ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 336D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.000 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 336D _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1900000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1900000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 342 _refine_hist.d_res_high 1.000 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 336D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 336D _struct.title 'INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 336D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 336D _struct_ref.pdbx_db_accession 336D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 336D A 1 ? 6 ? 336D 1 ? 6 ? 1 6 2 1 336D B 1 ? 6 ? 336D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? G HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 81 B MG 15 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc2 metalc ? ? G HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 83 B MG 15 1_555 ? ? ? ? ? ? ? 1.912 ? ? metalc3 metalc ? ? G HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 83 B MG 16 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 15 B HOH 80 1_555 ? ? ? ? ? ? ? 2.153 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 15 B HOH 82 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 15 B HOH 84 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 16 B HOH 84 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc8 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 16 B HOH 86 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc9 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 16 B HOH 88 1_555 ? ? ? ? ? ? ? 1.993 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? G HOH . ? A HOH 83 ? 1_555 68.6 ? 2 O ? G HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 80 ? 1_555 168.5 ? 3 O ? G HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 80 ? 1_555 116.8 ? 4 O ? G HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 82 ? 1_555 75.8 ? 5 O ? G HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 82 ? 1_555 143.4 ? 6 O ? H HOH . ? B HOH 80 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 82 ? 1_555 99.7 ? 7 O ? G HOH . ? A HOH 81 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 84 ? 1_555 104.5 ? 8 O ? G HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 84 ? 1_555 88.8 ? 9 O ? H HOH . ? B HOH 80 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 84 ? 1_555 86.1 ? 10 O ? H HOH . ? B HOH 82 ? 1_555 MG ? E MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 84 ? 1_555 92.0 ? 11 O ? G HOH . ? A HOH 83 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? H HOH . ? B HOH 84 ? 1_555 88.9 ? 12 O ? G HOH . ? A HOH 83 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? H HOH . ? B HOH 86 ? 1_555 115.6 ? 13 O ? H HOH . ? B HOH 84 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? H HOH . ? B HOH 86 ? 1_555 130.2 ? 14 O ? G HOH . ? A HOH 83 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? H HOH . ? B HOH 88 ? 1_555 146.2 ? 15 O ? H HOH . ? B HOH 84 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? H HOH . ? B HOH 88 ? 1_555 89.4 ? 16 O ? H HOH . ? B HOH 86 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? H HOH . ? B HOH 88 ? 1_555 90.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A TER 13 ? 15 'BINDING SITE FOR RESIDUE TER A 13' AC2 Software A TER 14 ? 10 'BINDING SITE FOR RESIDUE TER A 14' AC3 Software B MG 15 ? 9 'BINDING SITE FOR RESIDUE MG B 15' AC4 Software B MG 16 ? 8 'BINDING SITE FOR RESIDUE MG B 16' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 DC A 3 ? DC A 3 . ? 1_655 ? 2 AC1 15 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 15 DG A 4 ? DG A 4 . ? 1_655 ? 4 AC1 15 DC A 5 ? DC A 5 . ? 1_555 ? 5 AC1 15 DG A 6 ? DG A 6 . ? 1_555 ? 6 AC1 15 HOH G . ? HOH A 31 . ? 1_655 ? 7 AC1 15 HOH G . ? HOH A 35 . ? 1_655 ? 8 AC1 15 HOH G . ? HOH A 43 . ? 1_655 ? 9 AC1 15 HOH G . ? HOH A 52 . ? 1_655 ? 10 AC1 15 HOH G . ? HOH A 74 . ? 1_555 ? 11 AC1 15 HOH G . ? HOH A 76 . ? 1_555 ? 12 AC1 15 DG B 2 ? DG B 8 . ? 3_755 ? 13 AC1 15 DC B 3 ? DC B 9 . ? 3_755 ? 14 AC1 15 DG B 4 ? DG B 10 . ? 3_755 ? 15 AC1 15 HOH H . ? HOH B 44 . ? 3_755 ? 16 AC2 10 DC A 3 ? DC A 3 . ? 4_465 ? 17 AC2 10 DC A 3 ? DC A 3 . ? 1_555 ? 18 AC2 10 DG A 4 ? DG A 4 . ? 4_465 ? 19 AC2 10 HOH G . ? HOH A 31 . ? 1_555 ? 20 AC2 10 HOH G . ? HOH A 32 . ? 1_555 ? 21 AC2 10 HOH G . ? HOH A 66 . ? 1_555 ? 22 AC2 10 DC B 1 ? DC B 7 . ? 3_655 ? 23 AC2 10 DG B 2 ? DG B 8 . ? 3_655 ? 24 AC2 10 DG B 6 ? DG B 12 . ? 4_465 ? 25 AC2 10 HOH H . ? HOH B 58 . ? 4_465 ? 26 AC3 9 DG A 6 ? DG A 6 . ? 3_645 ? 27 AC3 9 HOH G . ? HOH A 81 . ? 1_555 ? 28 AC3 9 HOH G . ? HOH A 83 . ? 1_555 ? 29 AC3 9 HOH G . ? HOH A 85 . ? 1_555 ? 30 AC3 9 MG F . ? MG B 16 . ? 1_555 ? 31 AC3 9 HOH H . ? HOH B 73 . ? 1_555 ? 32 AC3 9 HOH H . ? HOH B 80 . ? 1_555 ? 33 AC3 9 HOH H . ? HOH B 82 . ? 1_555 ? 34 AC3 9 HOH H . ? HOH B 84 . ? 1_555 ? 35 AC4 8 HOH G . ? HOH A 83 . ? 1_555 ? 36 AC4 8 HOH G . ? HOH A 85 . ? 1_555 ? 37 AC4 8 DG B 4 ? DG B 10 . ? 1_555 ? 38 AC4 8 MG E . ? MG B 15 . ? 1_555 ? 39 AC4 8 HOH H . ? HOH B 84 . ? 1_555 ? 40 AC4 8 HOH H . ? HOH B 86 . ? 1_555 ? 41 AC4 8 HOH H . ? HOH B 87 . ? 1_555 ? 42 AC4 8 HOH H . ? HOH B 88 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 48 ? ? O A HOH 75 ? ? 1.89 2 1 N14 A TER 14 ? ? O A HOH 32 ? ? 1.90 3 1 O A HOH 63 ? ? O B HOH 68 ? ? 1.95 4 1 O A HOH 33 ? ? O B HOH 60 ? ? 2.02 5 1 O A HOH 41 ? ? O B HOH 72 ? ? 2.02 6 1 N1 A TER 14 ? ? O A HOH 66 ? ? 2.08 7 1 OP1 A DC 3 ? ? N9 A TER 14 ? ? 2.12 8 1 C2 A TER 13 ? ? O A HOH 76 ? ? 2.12 9 1 O B HOH 25 ? ? O B HOH 26 ? ? 2.13 10 1 O B HOH 72 ? ? O B HOH 80 ? ? 2.14 11 1 OP1 B DC 11 ? ? O B HOH 18 ? ? 2.16 12 1 O6 B DG 10 ? ? O B HOH 88 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N7 A DG 6 ? ? 1_555 O B HOH 73 ? ? 3_655 1.52 2 1 "O5'" A DG 2 ? ? 1_555 O A HOH 64 ? ? 4_465 1.57 3 1 O6 A DG 6 ? ? 1_555 O A HOH 41 ? ? 3_655 1.57 4 1 "C5'" A DG 2 ? ? 1_555 O A HOH 64 ? ? 4_465 1.61 5 1 "O4'" B DC 11 ? ? 1_555 O A HOH 65 ? ? 4_565 1.70 6 1 "C4'" B DC 11 ? ? 1_555 O A HOH 65 ? ? 4_565 1.85 7 1 O A HOH 78 ? ? 1_555 O B HOH 45 ? ? 1_655 1.94 8 1 C5 A DG 6 ? ? 1_555 O B HOH 73 ? ? 3_655 1.96 9 1 "O4'" A DC 1 ? ? 1_555 O A HOH 67 ? ? 4_565 1.96 10 1 O A HOH 42 ? ? 1_555 O A HOH 74 ? ? 1_455 1.97 11 1 "O3'" B DC 11 ? ? 1_555 O A HOH 65 ? ? 4_565 1.99 12 1 "C4'" A DC 1 ? ? 1_555 O A HOH 64 ? ? 4_465 2.04 13 1 O A HOH 35 ? ? 1_555 O B HOH 68 ? ? 1_455 2.06 14 1 "C1'" A DC 1 ? ? 1_555 O A HOH 67 ? ? 4_565 2.07 15 1 C10 A TER 13 ? ? 1_555 O A HOH 52 ? ? 1_655 2.08 16 1 N2 A DG 2 ? ? 1_555 O A HOH 67 ? ? 4_565 2.09 17 1 "O4'" A DG 2 ? ? 1_555 O A HOH 64 ? ? 4_465 2.13 18 1 "C1'" B DC 11 ? ? 1_555 O A HOH 65 ? ? 4_565 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.612 1.519 0.093 0.010 N 2 1 "C1'" A DC 1 ? ? N1 A DC 1 ? ? 1.575 1.488 0.087 0.013 N 3 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.590 1.512 0.078 0.007 N 4 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.359 1.446 -0.087 0.010 N 5 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.332 1.379 -0.047 0.007 N 6 1 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.607 1.529 0.078 0.010 N 7 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.582 1.519 0.063 0.010 N 8 1 "C1'" A DC 3 ? ? N1 A DC 3 ? ? 1.572 1.488 0.084 0.013 N 9 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.674 1.593 0.081 0.010 N 10 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.556 1.512 0.044 0.007 N 11 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.408 1.516 -0.108 0.008 N 12 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? 1.493 1.420 0.073 0.011 N 13 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.334 1.446 -0.112 0.010 N 14 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.409 1.350 0.059 0.007 N 15 1 C4 A DG 4 ? ? C5 A DG 4 ? ? 1.306 1.379 -0.073 0.007 N 16 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.332 1.391 -0.059 0.007 N 17 1 C2 A DG 4 ? ? N2 A DG 4 ? ? 1.279 1.341 -0.062 0.010 N 18 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.644 1.519 0.125 0.010 N 19 1 N1 A DC 5 ? ? C6 A DC 5 ? ? 1.404 1.367 0.037 0.006 N 20 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.405 1.335 0.070 0.007 N 21 1 P A DG 6 ? ? OP2 A DG 6 ? ? 1.366 1.485 -0.119 0.017 N 22 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.456 1.521 -0.065 0.010 N 23 1 "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.639 1.519 0.120 0.010 N 24 1 "C3'" B DC 7 ? ? "C2'" B DC 7 ? ? 1.442 1.516 -0.074 0.008 N 25 1 "C2'" B DC 7 ? ? "C1'" B DC 7 ? ? 1.606 1.519 0.087 0.010 N 26 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? 1.378 1.446 -0.068 0.010 N 27 1 N1 B DC 7 ? ? C2 B DC 7 ? ? 1.335 1.397 -0.062 0.010 N 28 1 C4 B DC 7 ? ? C5 B DC 7 ? ? 1.351 1.425 -0.074 0.008 N 29 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 1.453 1.516 -0.063 0.008 N 30 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.592 1.519 0.073 0.010 N 31 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.341 1.418 -0.077 0.012 N 32 1 "C1'" B DG 8 ? ? N9 B DG 8 ? ? 1.378 1.468 -0.090 0.014 N 33 1 N1 B DG 8 ? ? C2 B DG 8 ? ? 1.317 1.373 -0.056 0.008 N 34 1 C6 B DG 8 ? ? N1 B DG 8 ? ? 1.324 1.391 -0.067 0.007 N 35 1 N7 B DG 8 ? ? C8 B DG 8 ? ? 1.389 1.305 0.084 0.006 N 36 1 C8 B DG 8 ? ? N9 B DG 8 ? ? 1.291 1.374 -0.083 0.007 N 37 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.245 1.341 -0.096 0.010 N 38 1 "C5'" B DC 9 ? ? "C4'" B DC 9 ? ? 1.581 1.512 0.069 0.007 N 39 1 "C2'" B DC 9 ? ? "C1'" B DC 9 ? ? 1.620 1.519 0.101 0.010 N 40 1 "C5'" B DG 10 ? ? "C4'" B DG 10 ? ? 1.436 1.509 -0.073 0.011 N 41 1 C6 B DG 10 ? ? N1 B DG 10 ? ? 1.325 1.391 -0.066 0.007 N 42 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.342 1.388 -0.046 0.006 N 43 1 C2 B DG 10 ? ? N2 B DG 10 ? ? 1.254 1.341 -0.087 0.010 N 44 1 "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 1.584 1.519 0.065 0.010 N 45 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? 1.502 1.420 0.082 0.011 N 46 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.304 1.350 -0.046 0.007 N 47 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.349 1.305 0.044 0.006 N 48 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.253 1.341 -0.088 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 104.13 109.40 -5.27 0.80 N 2 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 122.83 120.30 2.53 0.40 N 3 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.78 118.90 3.88 0.60 N 4 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 119.67 110.70 8.97 1.20 N 5 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.72 109.40 -5.68 0.80 N 6 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 119.52 125.10 -5.58 0.60 N 7 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 129.47 123.90 5.57 0.60 N 8 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 108.48 111.90 -3.42 0.50 N 9 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.24 111.50 3.74 0.50 N 10 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 113.41 110.80 2.61 0.40 N 11 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 115.58 119.90 -4.32 0.70 N 12 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.75 128.60 -3.85 0.60 N 13 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 112.28 119.70 -7.42 1.20 Y 14 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 102.94 108.00 -5.06 0.70 N 15 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 124.84 118.90 5.94 0.60 N 16 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.70 121.90 -5.20 0.70 N 17 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 133.72 119.60 14.12 1.50 N 18 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP1 A DG 4 ? ? 95.61 105.70 -10.09 0.90 N 19 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 117.84 125.10 -7.26 0.60 N 20 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 131.50 123.90 7.60 0.60 N 21 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 105.40 111.90 -6.50 0.50 N 22 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 117.63 111.50 6.13 0.50 N 23 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 126.31 118.90 7.41 0.60 N 24 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 113.65 121.90 -8.25 0.70 N 25 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 111.88 119.70 -7.82 1.20 Y 26 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 102.99 109.40 -6.41 0.80 N 27 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.35 104.50 -3.15 0.40 N 28 1 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 116.69 110.30 6.39 0.70 N 29 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 109.78 103.10 6.68 0.90 N 30 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 96.43 102.40 -5.97 0.80 N 31 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.66 108.30 5.36 0.30 N 32 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 113.45 110.80 2.65 0.40 N 33 1 C8 A DG 6 ? ? N9 A DG 6 ? ? C4 A DG 6 ? ? 110.37 106.40 3.97 0.40 N 34 1 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 100.81 105.40 -4.59 0.40 N 35 1 N3 A DG 6 ? ? C4 A DG 6 ? ? N9 A DG 6 ? ? 130.81 126.00 4.81 0.60 N 36 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 113.15 119.90 -6.75 0.70 N 37 1 "O5'" B DC 7 ? ? "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 103.32 109.40 -6.08 0.80 N 38 1 "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? "O4'" B DC 7 ? ? 117.44 109.80 7.64 1.10 N 39 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.81 108.30 2.51 0.30 N 40 1 N3 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 115.33 121.90 -6.57 0.70 N 41 1 "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 100.22 104.50 -4.28 0.40 N 42 1 "C1'" B DG 8 ? ? "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? 121.94 110.30 11.64 0.70 N 43 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 98.74 105.90 -7.16 0.80 N 44 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.54 108.30 3.24 0.30 N 45 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 120.52 125.10 -4.58 0.60 N 46 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N3 B DG 8 ? ? 128.42 123.90 4.52 0.60 N 47 1 N3 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 123.82 128.60 -4.78 0.50 N 48 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 113.23 119.90 -6.67 0.70 N 49 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 123.37 128.60 -5.23 0.60 N 50 1 C6 B DC 9 ? ? N1 B DC 9 ? ? C2 B DC 9 ? ? 117.19 120.30 -3.11 0.40 N 51 1 N1 B DC 9 ? ? C2 B DC 9 ? ? N3 B DC 9 ? ? 123.82 119.20 4.62 0.70 N 52 1 C4 B DC 9 ? ? C5 B DC 9 ? ? C6 B DC 9 ? ? 120.83 117.40 3.43 0.50 N 53 1 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 115.74 121.90 -6.16 0.70 N 54 1 "C1'" B DG 10 ? ? "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? 116.06 110.30 5.76 0.70 N 55 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.74 108.30 2.44 0.30 N 56 1 C6 B DG 10 ? ? N1 B DG 10 ? ? C2 B DG 10 ? ? 120.79 125.10 -4.31 0.60 N 57 1 N1 B DG 10 ? ? C2 B DG 10 ? ? N3 B DG 10 ? ? 130.37 123.90 6.47 0.60 N 58 1 C2 B DG 10 ? ? N3 B DG 10 ? ? C4 B DG 10 ? ? 106.08 111.90 -5.82 0.50 N 59 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 115.83 111.50 4.33 0.50 N 60 1 C4 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 114.44 110.80 3.64 0.40 N 61 1 N9 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 102.93 105.40 -2.47 0.40 N 62 1 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 109.21 119.90 -10.69 0.70 N 63 1 C5 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 123.39 128.60 -5.21 0.60 N 64 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 99.62 104.50 -4.88 0.40 N 65 1 "C1'" B DC 11 ? ? "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? 119.98 110.30 9.68 0.70 N 66 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 95.68 105.90 -10.22 0.80 N 67 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.20 108.30 1.90 0.30 N 68 1 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 117.78 120.30 -2.52 0.40 N 69 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 113.10 117.40 -4.30 0.50 N 70 1 C5 B DC 11 ? ? C6 B DC 11 ? ? N1 B DC 11 ? ? 126.68 121.00 5.68 0.50 N 71 1 "O5'" B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 118.06 110.70 7.36 1.20 N 72 1 "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 102.46 109.40 -6.94 0.80 N 73 1 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 97.12 102.40 -5.28 0.80 N 74 1 C6 B DG 12 ? ? N1 B DG 12 ? ? C2 B DG 12 ? ? 119.21 125.10 -5.89 0.60 N 75 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N3 B DG 12 ? ? 128.03 123.90 4.13 0.60 N 76 1 C4 B DG 12 ? ? C5 B DG 12 ? ? C6 B DG 12 ? ? 114.73 118.80 -4.07 0.60 N 77 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 117.10 111.50 5.60 0.50 N 78 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 115.37 110.80 4.57 0.40 N 79 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 108.52 113.10 -4.58 0.50 N 80 1 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 112.52 106.40 6.12 0.40 N 81 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 99.40 105.40 -6.00 0.40 N 82 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 122.79 128.60 -5.81 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 MG MG MG N N 75 TER N1 N N N 76 TER C2 C N N 77 TER C3 C N N 78 TER C4 C N N 79 TER N5 N N N 80 TER C6 C N N 81 TER C7 C N N 82 TER C8 C N N 83 TER N9 N N N 84 TER C10 C N N 85 TER C11 C N N 86 TER C12 C N N 87 TER C13 C N N 88 TER N14 N N N 89 TER HN11 H N N 90 TER HN12 H N N 91 TER H21 H N N 92 TER H22 H N N 93 TER H31 H N N 94 TER H32 H N N 95 TER H41 H N N 96 TER H42 H N N 97 TER HN5 H N N 98 TER H61 H N N 99 TER H62 H N N 100 TER H71 H N N 101 TER H72 H N N 102 TER H81 H N N 103 TER H82 H N N 104 TER HN9 H N N 105 TER H101 H N N 106 TER H102 H N N 107 TER H111 H N N 108 TER H112 H N N 109 TER H121 H N N 110 TER H122 H N N 111 TER H131 H N N 112 TER H132 H N N 113 TER HN41 H N N 114 TER HN42 H N N 115 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 TER N1 C2 sing N N 77 TER N1 HN11 sing N N 78 TER N1 HN12 sing N N 79 TER C2 C3 sing N N 80 TER C2 H21 sing N N 81 TER C2 H22 sing N N 82 TER C3 C4 sing N N 83 TER C3 H31 sing N N 84 TER C3 H32 sing N N 85 TER C4 N5 sing N N 86 TER C4 H41 sing N N 87 TER C4 H42 sing N N 88 TER N5 C6 sing N N 89 TER N5 HN5 sing N N 90 TER C6 C7 sing N N 91 TER C6 H61 sing N N 92 TER C6 H62 sing N N 93 TER C7 C8 sing N N 94 TER C7 H71 sing N N 95 TER C7 H72 sing N N 96 TER C8 N9 sing N N 97 TER C8 H81 sing N N 98 TER C8 H82 sing N N 99 TER N9 C10 sing N N 100 TER N9 HN9 sing N N 101 TER C10 C11 sing N N 102 TER C10 H101 sing N N 103 TER C10 H102 sing N N 104 TER C11 C12 sing N N 105 TER C11 H111 sing N N 106 TER C11 H112 sing N N 107 TER C12 C13 sing N N 108 TER C12 H121 sing N N 109 TER C12 H122 sing N N 110 TER C13 N14 sing N N 111 TER C13 H131 sing N N 112 TER C13 H132 sing N N 113 TER N14 HN41 sing N N 114 TER N14 HN42 sing N N 115 # _ndb_struct_conf_na.entry_id 336D _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.257 -0.179 0.150 2.822 0.628 2.359 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.264 -0.127 -0.008 -6.838 -2.864 2.401 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.337 -0.147 0.042 4.680 -2.992 1.889 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.233 -0.046 0.032 -7.619 -1.299 1.220 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.187 -0.123 0.065 1.907 -0.594 1.798 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.222 -0.105 0.249 1.126 8.486 3.540 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 -0.012 5.289 3.702 0.243 -3.741 -6.792 -21.075 1.078 5.790 28.860 1.871 -7.757 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.127 -1.031 3.296 0.116 -4.343 -51.183 1.486 -0.138 3.204 5.017 0.134 -51.355 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.022 5.475 3.754 0.560 -3.121 -7.010 -25.957 2.496 5.642 23.977 4.301 -7.693 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.049 -0.818 3.243 0.113 -3.411 -51.116 1.178 -0.048 3.186 3.948 0.131 -51.223 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.214 5.251 3.557 -0.354 -2.451 -10.355 -23.139 0.409 4.673 13.333 -1.924 -10.646 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 336D _atom_sites.fract_transf_matrix[1][1] 0.055617 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031736 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022533 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_