data_344D # _entry.id 344D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 344D pdb_0000344d 10.2210/pdb344d/pdb RCSB ADHB99 ? ? WWPDB D_1000178813 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 344D _pdbx_database_status.recvd_initial_deposition_date 1997-08-04 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Todd, A.R.' 1 'Adams, A.' 2 'Powell, H.R.' 3 'Cardin, C.J.' 4 # _citation.id primary _citation.title 'Determination by MAD-DM of the structure of the DNA duplex d[ACGTACG(5-BrU)]2 at 1.46 A and 100 K.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 55 _citation.page_first 729 _citation.page_last 735 _citation.year 1999 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10089302 _citation.pdbx_database_id_DOI 10.1107/S090744499801261X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Todd, A.K.' 1 ? primary 'Adams, A.' 2 ? primary 'Powell, H.R.' 3 ? primary 'Wilcock, D.J.' 4 ? primary 'Thorpe, J.H.' 5 ? primary 'Lausi, A.' 6 ? primary 'Zanini, F.' 7 ? primary 'Wakelin, L.P.' 8 ? primary 'Cardin, C.J.' 9 ? # _cell.entry_id 344D _cell.length_a 43.597 _cell.length_b 43.597 _cell.length_c 26.268 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 344D _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*(BRU))-3') ; 2491.487 1 ? ? ? ? 2 water nat water 18.015 88 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DG)(DT)(DA)(DC)(DG)(BRU)' _entity_poly.pdbx_seq_one_letter_code_can ACGTACGU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 BRU n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 344D _struct_ref.pdbx_db_accession 344D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 344D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 344D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 344D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.90 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-05-14 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 344D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.000 _reflns.d_resolution_high 1.400 _reflns.number_obs 8062 _reflns.number_all ? _reflns.percent_possible_obs 98.300 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 0.1370 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.350 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.400 _reflns_shell.d_res_low 1.450 _reflns_shell.percent_possible_all 60.10 _reflns_shell.Rmerge_I_obs 0.137 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.100 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 344D _refine.ls_number_reflns_obs 4555 _refine.ls_number_reflns_all 4555 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.460 _refine.ls_percent_reflns_obs 96.500 _refine.ls_R_factor_obs 0.1115 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 2232 _refine.ls_number_restraints 2730 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER,J.MOL.BIOL.91(1973)201' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'ANISOTROPIC REFINEMENT' _refine.pdbx_starting_model 'NDB ENTRY ADH070 (PDB ENTRY 243D)' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 344D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 245.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 249 _refine_hist.d_res_high 1.460 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 344D _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1115 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1091 _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 4312 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 344D _struct.title 'DETERMINATION BY MAD-DM OF THE STRUCTURE OF THE DNA DUPLEX D(ACGTACG(5-BRU))2 AT 1.46A AND 100K' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 344D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 7 "O3'" ? ? ? 1_555 A BRU 8 P ? ? A DG 7 A BRU 8 1_555 ? ? ? ? ? ? ? 1.658 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 A BRU 8 N3 ? ? A DA 1 A BRU 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A BRU 8 O4 ? ? A DA 1 A BRU 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A BRU 8 N3 ? ? ? 1_555 A DA 1 N1 ? ? A BRU 8 A DA 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A BRU 8 O4 ? ? ? 1_555 A DA 1 N6 ? ? A BRU 8 A DA 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 344D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 344D _atom_sites.fract_transf_matrix[1][1] 0.022937 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022937 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038069 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 BRU 8 8 8 BRU +T A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 9 9 HOH HOH A . B 2 HOH 2 10 10 HOH HOH A . B 2 HOH 3 11 11 HOH HOH A . B 2 HOH 4 12 12 HOH HOH A . B 2 HOH 5 13 13 HOH HOH A . B 2 HOH 6 14 14 HOH HOH A . B 2 HOH 7 15 15 HOH HOH A . B 2 HOH 8 16 16 HOH HOH A . B 2 HOH 9 17 17 HOH HOH A . B 2 HOH 10 18 18 HOH HOH A . B 2 HOH 11 19 19 HOH HOH A . B 2 HOH 12 20 20 HOH HOH A . B 2 HOH 13 21 21 HOH HOH A . B 2 HOH 14 22 22 HOH HOH A . B 2 HOH 15 23 23 HOH HOH A . B 2 HOH 16 24 24 HOH HOH A . B 2 HOH 17 25 25 HOH HOH A . B 2 HOH 18 26 26 HOH HOH A . B 2 HOH 19 27 27 HOH HOH A . B 2 HOH 20 28 28 HOH HOH A . B 2 HOH 21 29 29 HOH HOH A . B 2 HOH 22 30 30 HOH HOH A . B 2 HOH 23 31 31 HOH HOH A . B 2 HOH 24 32 32 HOH HOH A . B 2 HOH 25 33 33 HOH HOH A . B 2 HOH 26 34 34 HOH HOH A . B 2 HOH 27 35 35 HOH HOH A . B 2 HOH 28 36 36 HOH HOH A . B 2 HOH 29 37 37 HOH HOH A . B 2 HOH 30 38 38 HOH HOH A . B 2 HOH 31 39 39 HOH HOH A . B 2 HOH 32 40 40 HOH HOH A . B 2 HOH 33 41 41 HOH HOH A . B 2 HOH 34 42 42 HOH HOH A . B 2 HOH 35 43 43 HOH HOH A . B 2 HOH 36 44 44 HOH HOH A . B 2 HOH 37 45 45 HOH HOH A . B 2 HOH 38 46 46 HOH HOH A . B 2 HOH 39 47 47 HOH HOH A . B 2 HOH 40 48 48 HOH HOH A . B 2 HOH 41 49 49 HOH HOH A . B 2 HOH 42 50 50 HOH HOH A . B 2 HOH 43 51 51 HOH HOH A . B 2 HOH 44 52 52 HOH HOH A . B 2 HOH 45 53 53 HOH HOH A . B 2 HOH 46 54 54 HOH HOH A . B 2 HOH 47 55 55 HOH HOH A . B 2 HOH 48 56 56 HOH HOH A . B 2 HOH 49 57 57 HOH HOH A . B 2 HOH 50 58 58 HOH HOH A . B 2 HOH 51 59 59 HOH HOH A . B 2 HOH 52 60 60 HOH HOH A . B 2 HOH 53 61 61 HOH HOH A . B 2 HOH 54 62 62 HOH HOH A . B 2 HOH 55 63 63 HOH HOH A . B 2 HOH 56 64 64 HOH HOH A . B 2 HOH 57 65 65 HOH HOH A . B 2 HOH 58 66 66 HOH HOH A . B 2 HOH 59 67 67 HOH HOH A . B 2 HOH 60 68 68 HOH HOH A . B 2 HOH 61 69 69 HOH HOH A . B 2 HOH 62 70 70 HOH HOH A . B 2 HOH 63 71 71 HOH HOH A . B 2 HOH 64 72 72 HOH HOH A . B 2 HOH 65 73 73 HOH HOH A . B 2 HOH 66 74 74 HOH HOH A . B 2 HOH 67 75 75 HOH HOH A . B 2 HOH 68 76 76 HOH HOH A . B 2 HOH 69 77 77 HOH HOH A . B 2 HOH 70 78 78 HOH HOH A . B 2 HOH 71 79 79 HOH HOH A . B 2 HOH 72 80 80 HOH HOH A . B 2 HOH 73 81 81 HOH HOH A . B 2 HOH 74 82 82 HOH HOH A . B 2 HOH 75 83 83 HOH HOH A . B 2 HOH 76 84 84 HOH HOH A . B 2 HOH 77 85 85 HOH HOH A . B 2 HOH 78 86 86 HOH HOH A . B 2 HOH 79 87 87 HOH HOH A . B 2 HOH 80 88 88 HOH HOH A . B 2 HOH 81 89 89 HOH HOH A . B 2 HOH 82 90 90 HOH HOH A . B 2 HOH 83 91 91 HOH HOH A . B 2 HOH 84 92 92 HOH HOH A . B 2 HOH 85 93 93 HOH HOH A . B 2 HOH 86 94 94 HOH HOH A . B 2 HOH 87 95 95 HOH HOH A . B 2 HOH 88 96 96 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id BRU _pdbx_struct_mod_residue.label_seq_id 8 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id BRU _pdbx_struct_mod_residue.auth_seq_id 8 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 54 ? B HOH . 2 1 A HOH 74 ? B HOH . 3 1 A HOH 92 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-09-26 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MLPHARE phasing . ? 1 DM 'model building' '(CCP4 VERSIONS)' ? 2 SHELXL-96 refinement . ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 DM phasing . ? 6 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DA 1 ? ? "C4'" A DA 1 ? ? 1.580 1.512 0.068 0.007 N 2 1 "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? 1.616 1.529 0.087 0.010 N 3 1 "C3'" A DA 1 ? ? "C2'" A DA 1 ? ? 1.621 1.518 0.103 0.012 N 4 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? 1.505 1.420 0.085 0.011 N 5 1 "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? 1.505 1.449 0.056 0.009 N 6 1 C2 A DA 1 ? ? N3 A DA 1 ? ? 1.393 1.331 0.062 0.009 N 7 1 N3 A DA 1 ? ? C4 A DA 1 ? ? 1.390 1.344 0.046 0.006 N 8 1 C6 A DA 1 ? ? N1 A DA 1 ? ? 1.408 1.351 0.057 0.007 N 9 1 N7 A DA 1 ? ? C8 A DA 1 ? ? 1.373 1.311 0.062 0.007 N 10 1 C6 A DA 1 ? ? N6 A DA 1 ? ? 1.400 1.335 0.065 0.008 N 11 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.660 1.593 0.067 0.010 N 12 1 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 1.562 1.512 0.050 0.007 N 13 1 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 1.646 1.529 0.117 0.010 N 14 1 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 1.615 1.518 0.097 0.012 N 15 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? 1.504 1.420 0.084 0.011 N 16 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? 1.515 1.449 0.066 0.009 N 17 1 "C1'" A DC 2 ? ? N1 A DC 2 ? ? 1.583 1.488 0.095 0.013 N 18 1 C4 A DC 2 ? ? N4 A DC 2 ? ? 1.390 1.335 0.055 0.009 N 19 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.670 1.593 0.077 0.010 N 20 1 "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 1.602 1.512 0.090 0.007 N 21 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.651 1.529 0.122 0.010 N 22 1 "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 1.627 1.518 0.109 0.012 N 23 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.519 1.420 0.099 0.011 N 24 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? 1.506 1.449 0.057 0.009 N 25 1 N1 A DG 3 ? ? C2 A DG 3 ? ? 1.432 1.373 0.059 0.008 N 26 1 C5 A DG 3 ? ? N7 A DG 3 ? ? 1.426 1.388 0.038 0.006 N 27 1 P A DT 4 ? ? "O5'" A DT 4 ? ? 1.675 1.593 0.082 0.010 N 28 1 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.601 1.512 0.089 0.007 N 29 1 "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 1.650 1.529 0.121 0.010 N 30 1 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? 1.623 1.518 0.105 0.012 N 31 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.530 1.420 0.110 0.011 N 32 1 "C1'" A DT 4 ? ? N1 A DT 4 ? ? 1.567 1.488 0.079 0.013 N 33 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.589 1.496 0.093 0.006 N 34 1 P A DA 5 ? ? "O5'" A DA 5 ? ? 1.685 1.593 0.092 0.010 N 35 1 "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 1.588 1.512 0.076 0.007 N 36 1 "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 1.620 1.529 0.091 0.010 N 37 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? 1.606 1.518 0.088 0.012 N 38 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? 1.509 1.420 0.089 0.011 N 39 1 "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? 1.509 1.449 0.060 0.009 N 40 1 N3 A DA 5 ? ? C4 A DA 5 ? ? 1.393 1.344 0.049 0.006 N 41 1 C5 A DA 5 ? ? N7 A DA 5 ? ? 1.476 1.388 0.088 0.006 N 42 1 P A DC 6 ? ? "O5'" A DC 6 ? ? 1.666 1.593 0.073 0.010 N 43 1 "C5'" A DC 6 ? ? "C4'" A DC 6 ? ? 1.571 1.512 0.059 0.007 N 44 1 "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 1.629 1.529 0.100 0.010 N 45 1 "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 1.615 1.518 0.097 0.012 N 46 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? 1.516 1.420 0.096 0.011 N 47 1 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? 1.533 1.449 0.084 0.009 N 48 1 "C1'" A DC 6 ? ? N1 A DC 6 ? ? 1.608 1.488 0.120 0.013 N 49 1 C4 A DC 6 ? ? N4 A DC 6 ? ? 1.396 1.335 0.061 0.009 N 50 1 N1 A DC 6 ? ? C6 A DC 6 ? ? 1.432 1.367 0.065 0.006 N 51 1 N3 A DC 6 ? ? C4 A DC 6 ? ? 1.387 1.335 0.052 0.007 N 52 1 P A DG 7 ? ? "O5'" A DG 7 ? ? 1.683 1.593 0.090 0.010 N 53 1 "C5'" A DG 7 ? ? "C4'" A DG 7 ? ? 1.585 1.512 0.073 0.007 N 54 1 "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 1.634 1.529 0.105 0.010 N 55 1 "C3'" A DG 7 ? ? "C2'" A DG 7 ? ? 1.611 1.518 0.093 0.012 N 56 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? 1.507 1.420 0.087 0.011 N 57 1 N3 A DG 7 ? ? C4 A DG 7 ? ? 1.396 1.350 0.046 0.007 N 58 1 C6 A DG 7 ? ? N1 A DG 7 ? ? 1.444 1.391 0.053 0.007 N 59 1 N7 A DG 7 ? ? C8 A DG 7 ? ? 1.355 1.305 0.050 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 100.08 104.50 -4.42 0.40 N 2 1 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 97.39 102.40 -5.01 0.80 N 3 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 109.85 106.80 3.05 0.50 N 4 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 111.69 106.80 4.89 0.50 N 5 1 C6 A DG 3 ? ? N1 A DG 3 ? ? C2 A DG 3 ? ? 120.63 125.10 -4.47 0.60 N 6 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 115.76 111.50 4.26 0.50 N 7 1 N1 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 115.76 119.90 -4.14 0.60 N 8 1 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 97.41 102.40 -4.99 0.80 N 9 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 114.50 106.80 7.70 0.50 N 10 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 123.41 127.20 -3.79 0.60 N 11 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 96.97 102.40 -5.43 0.80 N 12 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 112.98 106.80 6.18 0.50 N 13 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 103.04 108.00 -4.96 0.70 N 14 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 120.05 117.00 3.05 0.50 N 15 1 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 101.92 104.50 -2.58 0.40 N 16 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? "C2'" A DC 6 ? ? 110.67 106.80 3.87 0.50 N 17 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? "C2'" A DG 7 ? ? 110.67 106.80 3.87 0.50 N # _ndb_struct_conf_na.entry_id 344D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 A BRU 8 7_555 0.100 0.147 -0.052 1.809 -15.048 -4.511 1 A_DA1:BRU8_A A 1 ? A 8 ? 20 1 1 A DC 2 1_555 A DG 7 7_555 0.224 0.085 0.026 7.608 -16.208 0.498 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DC 6 7_555 -0.258 0.083 0.158 -4.492 -15.089 0.042 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A DT 4 1_555 A DA 5 7_555 -0.049 0.141 0.294 -4.964 -9.385 -4.466 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A DT 4 7_555 0.049 0.141 0.294 4.964 -9.385 -4.466 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 7_555 0.258 0.083 0.158 4.492 -15.089 0.042 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DG 7 1_555 A DC 2 7_555 -0.224 0.085 0.026 -7.608 -16.208 0.498 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1 1 A BRU 8 1_555 A DA 1 7_555 -0.100 0.147 -0.052 -1.809 -15.048 -4.511 8 A_BRU8:DA1_A A 8 ? A 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 A BRU 8 7_555 A DC 2 1_555 A DG 7 7_555 0.992 -1.492 3.229 1.234 5.427 34.179 -3.307 -1.485 2.997 9.159 -2.082 34.616 1 AA_DA1DC2:DG7BRU8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 7_555 A DG 3 1_555 A DC 6 7_555 -0.130 -1.791 3.517 -0.628 12.700 29.596 -5.435 0.126 2.555 23.540 1.163 32.156 2 AA_DC2DG3:DC6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_555 A DT 4 1_555 A DA 5 7_555 -0.484 -1.470 3.415 -0.714 -0.097 36.445 -2.335 0.669 3.427 -0.156 1.142 36.451 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DT 4 1_555 A DA 5 7_555 A DA 5 1_555 A DT 4 7_555 0.000 -1.515 2.998 0.000 4.654 29.813 -3.747 0.000 2.736 8.977 0.000 30.165 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A DT 4 7_555 A DC 6 1_555 A DG 3 7_555 0.484 -1.470 3.415 0.714 -0.097 36.445 -2.335 -0.669 3.427 -0.156 -1.142 36.451 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_555 A DG 7 1_555 A DC 2 7_555 0.130 -1.791 3.517 0.628 12.700 29.596 -5.435 -0.126 2.555 23.540 -1.163 32.156 6 AA_DC6DG7:DC2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DG 7 1_555 A DC 2 7_555 A BRU 8 1_555 A DA 1 7_555 -0.992 -1.492 3.229 -1.234 5.427 34.179 -3.307 1.485 2.997 9.159 2.082 34.616 7 AA_DG7BRU8:DA1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 243D _pdbx_initial_refinement_model.details 'NDB ENTRY ADH070 (PDB ENTRY 243D)' #