data_359D # _entry.id 359D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 359D pdb_0000359d 10.2210/pdb359d/pdb RCSB URX067 ? ? WWPDB D_1000178828 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 359D _pdbx_database_status.recvd_initial_deposition_date 1997-10-27 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Feig, A.L.' 1 'Scott, W.G.' 2 'Uhlenbeck, O.C.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of Tb.' Science 279 81 84 1998 SCIEAS US 0036-8075 0038 ? 9417029 10.1126/science.279.5347.81 1 'Capturing the Structure of a Catalytic RNA Intermediate: The Hammerhead Ribozyme' Science 274 2065 2069 1996 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feig, A.L.' 1 ? primary 'Scott, W.G.' 2 ? primary 'Uhlenbeck, O.C.' 3 ? 1 'Scott, W.G.' 4 ? 1 'Murray, J.B.' 5 ? 1 'Arnold, J.R.P.' 6 ? 1 'Stoddard, B.L.' 7 ? 1 'Klug, A.' 8 ? # _cell.entry_id 359D _cell.length_a 65.540 _cell.length_b 65.540 _cell.length_c 138.080 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 359D _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA HAMMERHEAD RIBOZYME' 5170.103 1 ? ? ? ? 2 polymer syn 'RNA HAMMERHEAD RIBOZYME' 8019.876 1 ? ? ? ? 3 non-polymer syn 'TERBIUM(III) ION' 158.925 5 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GUGGUCUGAUGAGGCC GUGGUCUGAUGAGGCC A ? 2 polyribonucleotide no no GGCCGAAACUCGUAAGAGUCACCAC GGCCGAAACUCGUAAGAGUCACCAC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 G n 1 4 G n 1 5 U n 1 6 C n 1 7 U n 1 8 G n 1 9 A n 1 10 U n 1 11 G n 1 12 A n 1 13 G n 1 14 G n 1 15 C n 1 16 C n 2 1 G n 2 2 G n 2 3 C n 2 4 C n 2 5 G n 2 6 A n 2 7 A n 2 8 A n 2 9 C n 2 10 U n 2 11 C n 2 12 G n 2 13 U n 2 14 A n 2 15 A n 2 16 G n 2 17 A n 2 18 G n 2 19 U n 2 20 C n 2 21 A n 2 22 C n 2 23 C n 2 24 A n 2 25 C n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 359D 359D ? ? ? 2 2 PDB 359D 359D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 359D A 1 ? 16 ? 359D 25 ? 104 ? 25 104 2 2 359D B 1 ? 25 ? 359D 114 ? 15 ? 114 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 TB non-polymer . 'TERBIUM(III) ION' ? 'Tb 3' 158.925 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 359D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 6.49 _exptl_crystal.density_percent_sol 78.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'LI SULFATE' ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 TBCL3 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-11-03 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 359D _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.800 _reflns.d_resolution_high 2.900 _reflns.number_obs 7810 _reflns.number_all ? _reflns.percent_possible_obs 97.700 _reflns.pdbx_Rmerge_I_obs 0.0520000 _reflns.pdbx_Rsym_value 0.0470000 _reflns.pdbx_netI_over_sigmaI 7.7000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.900 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.900 _reflns_shell.d_res_low 3.060 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.0820000 _reflns_shell.pdbx_Rsym_value 0.0790000 _reflns_shell.meanI_over_sigI_obs 4.800 _reflns_shell.pdbx_redundancy 4.100 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 359D _refine.ls_number_reflns_obs 7810 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.800 _refine.ls_d_res_high 2.900 _refine.ls_percent_reflns_obs 97.700 _refine.ls_R_factor_obs 0.2560000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2560000 _refine.ls_R_factor_R_free 0.3020000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 781 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 52.70 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'BULK SOLVENT MODEL EMPLOYED TO INCLUDE ALL LOW RESOLUTION DATA' _refine.pdbx_starting_model 'NDB ENTRY URX057 (PDB ENTRY 299D)' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 359D _refine_analyze.Luzzati_coordinate_error_obs 0.03 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 873 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 878 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 35.800 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.17 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 14.7 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.10 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file NDB_PARAMETER_FILE.RNA _pdbx_xplor_file.topol_file NDB_TOPOLOGY_FILE.RNA _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 359D _struct.title 'INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 359D _struct_keywords.pdbx_keywords RIBOZYME _struct_keywords.text 'RNA HAMMERHEAD RIBOZYME, CATALYTIC RNA, LOOP, RIBOZYME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 25 N3 ? ? A G 25 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 25 O2 ? ? A G 25 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 25 N4 ? ? A G 25 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 24 N1 ? ? A U 24 B A 14 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 23 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 23 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 23 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 22 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 22 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 22 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 21 N1 ? ? A U 21 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 21 N6 ? ? A U 21 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 B C 20 N4 ? ? A C 30 B C 170 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog14 hydrog ? ? A U 10 O2 ? ? ? 1_555 B A 7 N6 ? ? A U 70 B A 140 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog15 hydrog ? ? A G 11 N2 ? ? ? 1_555 B A 6 N7 ? ? A G 80 B A 130 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A G 11 N3 ? ? ? 1_555 B A 6 N6 ? ? A G 80 B A 130 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A A 12 N7 ? ? ? 1_555 B G 5 N2 ? ? A A 90 B G 120 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog18 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 101 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 101 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 101 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 102 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 102 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 102 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 103 B G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 103 B G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 103 B G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 16 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 104 B G 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 16 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 104 B G 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 16 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 104 B G 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B A 8 N6 ? ? ? 1_555 B U 19 O4 ? ? B A 151 B U 161 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog31 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 152 B G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 152 B G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 152 B G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 17 N1 ? ? B U 153 B A 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 17 N6 ? ? B U 153 B A 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 16 N1 ? ? B C 154 B G 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 16 O6 ? ? B C 154 B G 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 16 N2 ? ? B C 154 B G 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 12 N2 ? L ? 1_555 B A 15 N7 ? L B G 31 B A 34 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B TB 1 ? 1 'BINDING SITE FOR RESIDUE TB B 1' AC2 Software B TB 7 ? 2 'BINDING SITE FOR RESIDUE TB B 7' AC3 Software B TB 8 ? 1 'BINDING SITE FOR RESIDUE TB B 8' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 C B 22 ? C B 12 . ? 1_555 ? 2 AC2 2 A B 21 ? A B 11 . ? 1_555 ? 3 AC2 2 C B 22 ? C B 12 . ? 1_555 ? 4 AC3 1 A B 17 ? A B 163 . ? 1_555 ? # _database_PDB_matrix.entry_id 359D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 359D _atom_sites.fract_transf_matrix[1][1] 0.015258 _atom_sites.fract_transf_matrix[1][2] 0.008809 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017618 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007242 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P TB # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 25 25 G G A . n A 1 2 U 2 24 24 U U A . n A 1 3 G 3 23 23 G G A . n A 1 4 G 4 22 22 G G A . n A 1 5 U 5 21 21 U U A . n A 1 6 C 6 30 30 C C A . n A 1 7 U 7 40 40 U U A . n A 1 8 G 8 50 50 G G A . n A 1 9 A 9 60 60 A A A . n A 1 10 U 10 70 70 U U A . n A 1 11 G 11 80 80 G G A . n A 1 12 A 12 90 90 A A A . n A 1 13 G 13 101 101 G G A . n A 1 14 G 14 102 102 G G A . n A 1 15 C 15 103 103 C C A . n A 1 16 C 16 104 104 C C A . n B 2 1 G 1 114 114 G G B . n B 2 2 G 2 113 113 G G B . n B 2 3 C 3 112 112 C C B . n B 2 4 C 4 111 111 C C B . n B 2 5 G 5 120 120 G G B . n B 2 6 A 6 130 130 A A B . n B 2 7 A 7 140 140 A A B . n B 2 8 A 8 151 151 A A B . n B 2 9 C 9 152 152 C C B . n B 2 10 U 10 153 153 U U B . n B 2 11 C 11 154 154 C C B . n B 2 12 G 12 31 31 G G B L n B 2 13 U 13 32 32 U U B L n B 2 14 A 14 33 33 A A B L n B 2 15 A 15 34 34 A A B L n B 2 16 G 16 164 164 G G B . n B 2 17 A 17 163 163 A A B . n B 2 18 G 18 162 162 G G B . n B 2 19 U 19 161 161 U U B . n B 2 20 C 20 170 170 C C B . n B 2 21 A 21 11 11 A A B . n B 2 22 C 22 12 12 C C B . n B 2 23 C 23 13 13 C C B . n B 2 24 A 24 14 14 A A B . n B 2 25 C 25 15 15 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TB 1 4 4 TB TB A . D 3 TB 1 3 3 TB TB A . E 3 TB 1 1 1 TB TB B . F 3 TB 1 7 7 TB TB B . G 3 TB 1 8 8 TB TB B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-11-07 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 'REFINEMENT BASED ON INITIAL MODEL PHASES' ? 1 X-PLOR refinement . ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 X-PLOR phasing 'REFINEMENT BASED ON INITIAL MODEL PHASES' ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N1 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 U _pdbx_validate_rmsd_bond.auth_seq_id_1 24 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 U _pdbx_validate_rmsd_bond.auth_seq_id_2 24 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.320 _pdbx_validate_rmsd_bond.bond_target_value 1.381 _pdbx_validate_rmsd_bond.bond_deviation -0.061 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B G 164 ? ? P B G 164 ? ? OP2 B G 164 ? ? 96.91 105.70 -8.79 0.90 N 2 1 "O5'" B A 163 ? ? P B A 163 ? ? OP1 B A 163 ? ? 98.89 105.70 -6.81 0.90 N 3 1 "O5'" B A 163 ? ? P B A 163 ? ? OP2 B A 163 ? ? 120.31 110.70 9.61 1.20 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 24 ? ? 0.079 'SIDE CHAIN' 2 1 A A 90 ? ? 0.060 'SIDE CHAIN' 3 1 C A 103 ? ? 0.071 'SIDE CHAIN' 4 1 A B 130 ? ? 0.061 'SIDE CHAIN' 5 1 A B 140 ? ? 0.073 'SIDE CHAIN' 6 1 G B 31 L ? 0.088 'SIDE CHAIN' 7 1 A B 33 L ? 0.065 'SIDE CHAIN' 8 1 A B 34 L ? 0.061 'SIDE CHAIN' 9 1 U B 161 ? ? 0.133 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 359D 'double helix' 359D 'a-form double helix' 359D tetraloop 359D 'mismatched base pair' 359D 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 25 1_555 0.210 0.326 -0.049 -11.292 -12.108 3.262 1 A_G25:C15_B A 25 ? B 15 ? 19 1 1 A U 2 1_555 B A 24 1_555 -0.612 0.368 -0.268 2.564 -14.763 12.184 2 A_U24:A14_B A 24 ? B 14 ? ? ? 1 A G 3 1_555 B C 23 1_555 0.656 -0.328 -0.303 1.706 -7.140 -3.458 3 A_G23:C13_B A 23 ? B 13 ? 19 1 1 A G 4 1_555 B C 22 1_555 -0.306 -0.199 -0.369 3.075 -13.519 5.657 4 A_G22:C12_B A 22 ? B 12 ? 19 1 1 A U 5 1_555 B A 21 1_555 -0.324 -0.278 -0.669 11.862 -7.762 2.552 5 A_U21:A11_B A 21 ? B 11 ? 20 1 1 A C 6 1_555 B C 20 1_555 2.395 -1.650 0.658 29.756 -10.662 16.698 6 A_C30:C170_B A 30 ? B 170 ? ? ? 1 B G 1 1_555 A C 16 1_555 0.013 0.090 0.564 -0.723 -9.633 -2.321 7 B_G114:C104_A B 114 ? A 104 ? 19 1 1 B G 2 1_555 A C 15 1_555 0.099 -0.346 0.153 -1.398 -12.824 -4.385 8 B_G113:C103_A B 113 ? A 103 ? 19 1 1 B C 3 1_555 A G 14 1_555 0.230 -0.287 0.048 2.575 -9.480 -6.748 9 B_C112:G102_A B 112 ? A 102 ? 19 1 1 B C 4 1_555 A G 13 1_555 0.275 -0.568 0.189 3.259 -8.117 1.377 10 B_C111:G101_A B 111 ? A 101 ? 19 1 1 B G 5 1_555 A A 12 1_555 7.134 -4.958 -0.219 8.503 -12.345 -20.632 11 B_G120:A90_A B 120 ? A 90 ? ? 10 1 B A 6 1_555 A G 11 1_555 -6.563 -4.096 0.114 -24.142 13.269 4.756 12 B_A130:G80_A B 130 ? A 80 ? 11 10 1 B A 7 1_555 A U 10 1_555 -6.348 -0.153 1.348 26.347 -10.483 55.105 13 B_A140:U70_A B 140 ? A 70 ? ? 5 1 B A 8 1_555 B U 19 1_555 0.738 1.227 -0.689 -6.784 -17.420 -39.028 14 B_A151:U161_B B 151 ? B 161 ? ? ? 1 B C 9 1_555 B G 18 1_555 -0.210 -0.307 0.486 -0.692 -16.202 -4.258 15 B_C152:G162_B B 152 ? B 162 ? 19 1 1 B U 10 1_555 B A 17 1_555 -0.358 0.085 0.107 7.268 -10.126 5.091 16 B_U153:A163_B B 153 ? B 163 ? 20 1 1 B C 11 1_555 B G 16 1_555 0.141 -0.182 0.093 9.483 0.667 0.522 17 B_C154:G164_B B 154 ? B 164 ? 19 1 1 B G 12 1_555 B A 15 1_555 7.520 -6.347 1.065 0.927 -23.823 -37.582 18 B_G31L:A34L_B B 31 L B 34 L ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 25 1_555 A U 2 1_555 B A 24 1_555 -0.414 -0.948 2.916 -0.047 1.965 27.930 -2.370 0.847 2.845 4.064 0.096 27.998 1 AA_G25U24:A14C15_BB A 25 ? B 15 ? A 24 ? B 14 ? 1 A U 2 1_555 B A 24 1_555 A G 3 1_555 B C 23 1_555 -0.011 -1.041 3.324 -1.392 6.899 39.769 -2.278 -0.140 3.107 10.045 2.027 40.362 2 AA_U24G23:C13A14_BB A 24 ? B 14 ? A 23 ? B 13 ? 1 A G 3 1_555 B C 23 1_555 A G 4 1_555 B C 22 1_555 0.552 -2.003 3.264 1.695 7.221 20.875 -7.696 -0.856 2.475 19.166 -4.500 22.139 3 AA_G23G22:C12C13_BB A 23 ? B 13 ? A 22 ? B 12 ? 1 A G 4 1_555 B C 22 1_555 A U 5 1_555 B A 21 1_555 0.057 -2.046 3.066 -0.959 2.632 29.652 -4.481 -0.292 2.875 5.129 1.869 29.781 4 AA_G22U21:A11C12_BB A 22 ? B 12 ? A 21 ? B 11 ? 1 A U 5 1_555 B A 21 1_555 A C 6 1_555 B C 20 1_555 0.768 -1.765 2.844 -11.735 -1.648 40.274 -2.321 -2.114 2.598 -2.332 16.613 41.911 5 AA_U21C30:C170A11_BB A 21 ? B 11 ? A 30 ? B 170 ? 1 B G 1 1_555 A C 16 1_555 B G 2 1_555 A C 15 1_555 -0.926 -1.602 3.198 -1.892 4.468 34.289 -3.350 1.278 3.017 7.531 3.189 34.620 6 BB_G114G113:C103C104_AA B 114 ? A 104 ? B 113 ? A 103 ? 1 B G 2 1_555 A C 15 1_555 B C 3 1_555 A G 14 1_555 -0.189 -1.834 3.194 -1.970 2.061 36.270 -3.214 0.039 3.095 3.305 3.158 36.378 7 BB_G113C112:G102C103_AA B 113 ? A 103 ? B 112 ? A 102 ? 1 B C 3 1_555 A G 14 1_555 B C 4 1_555 A G 13 1_555 -0.022 -2.006 3.265 -0.952 -0.729 24.255 -4.538 -0.250 3.322 -1.734 2.265 24.284 8 BB_C112C111:G101G102_AA B 112 ? A 102 ? B 111 ? A 101 ? 1 B C 4 1_555 A G 13 1_555 B G 5 1_555 A A 12 1_555 -1.226 -1.136 3.387 5.672 5.335 62.805 -1.321 1.422 3.181 5.099 -5.420 63.237 9 BB_C111G120:A90G101_AA B 111 ? A 101 ? B 120 ? A 90 ? 1 B G 5 1_555 A A 12 1_555 B A 6 1_555 A G 11 1_555 1.420 -1.057 3.984 1.862 -0.942 -13.155 5.724 8.430 3.663 4.078 8.060 -13.318 10 BB_G120A130:G80A90_AA B 120 ? A 90 ? B 130 ? A 80 ? 1 B A 6 1_555 A G 11 1_555 B A 7 1_555 A U 10 1_555 3.041 -1.148 1.845 -17.995 6.040 27.256 -2.281 -6.127 -0.301 11.250 33.520 33.111 11 BB_A130A140:U70G80_AA B 130 ? A 80 ? B 140 ? A 70 ? 1 B A 7 1_555 A U 10 1_555 B A 8 1_555 B U 19 1_555 -2.391 -1.380 3.864 0.014 13.854 78.733 -1.503 1.865 3.622 10.843 -0.011 79.747 12 BB_A140A151:U161U70_BA B 140 ? A 70 ? B 151 ? B 161 ? 1 B A 8 1_555 B U 19 1_555 B C 9 1_555 B G 18 1_555 1.356 -1.297 2.951 -11.233 3.798 24.509 -3.510 -5.106 1.935 8.350 24.697 27.187 13 BB_A151C152:G162U161_BB B 151 ? B 161 ? B 152 ? B 162 ? 1 B C 9 1_555 B G 18 1_555 B U 10 1_555 B A 17 1_555 0.080 -1.329 3.180 -0.941 0.037 35.975 -2.156 -0.260 3.175 0.059 1.524 35.987 14 BB_C152U153:A163G162_BB B 152 ? B 162 ? B 153 ? B 163 ? 1 B U 10 1_555 B A 17 1_555 B C 11 1_555 B G 16 1_555 -0.106 -1.796 3.312 -2.650 5.212 32.729 -3.987 -0.245 2.998 9.159 4.656 33.233 15 BB_U153C154:G164A163_BB B 153 ? B 163 ? B 154 ? B 164 ? 1 B C 11 1_555 B G 16 1_555 B G 12 1_555 B A 15 1_555 -3.316 -1.373 3.580 -0.577 17.918 57.206 -2.317 3.299 3.095 18.226 0.587 59.722 16 BB_C154G31L:A34LG164_BB B 154 ? B 164 ? B 31 L B 34 L # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'TERBIUM(III) ION' _pdbx_entity_nonpoly.comp_id TB # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 299D _pdbx_initial_refinement_model.details 'NDB ENTRY URX057 (PDB ENTRY 299D)' #