data_360D # _entry.id 360D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 360D pdb_0000360d 10.2210/pdb360d/pdb RCSB GDL056 ? ? WWPDB D_1000178830 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 360D _pdbx_database_status.recvd_initial_deposition_date 1997-10-29 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guerri, A.' 1 ? 'Simpson, I.J.' 2 ? 'Neidle, S.' 3 ? # _citation.id primary _citation.title 'Visualisation of extensive water ribbons and networks in a DNA minor-groove drug complex.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 26 _citation.page_first 2873 _citation.page_last 2878 _citation.year 1998 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9611230 _citation.pdbx_database_id_DOI 10.1093/nar/26.12.2873 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guerri, A.' 1 ? primary 'Simpson, I.J.' 2 ? primary 'Neidle, S.' 3 ? # _cell.entry_id 360D _cell.length_a 24.240 _cell.length_b 39.940 _cell.length_c 65.880 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 360D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "N,N'-(furan-2,5-diylbis{benzene-4,1-diyl[(Z)-aminomethylylidene]})diethanaminium" 362.468 1 ? ? ? ? 4 water nat water 18.015 219 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 360D _struct_ref.pdbx_db_accession 360D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 360D A 1 ? 12 ? 360D 1 ? 12 ? 1 12 2 1 360D B 1 ? 12 ? 360D 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BPF non-polymer . "N,N'-(furan-2,5-diylbis{benzene-4,1-diyl[(Z)-aminomethylylidene]})diethanaminium" 'DB185; FURAMIDINE DERIVATIVE' 'C22 H26 N4 O 2' 362.468 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 360D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.48 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 288.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, temperature 288.0K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'SODIUM CACODYLATE' ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 MPD ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1997-07-01 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 360D _reflns.observed_criterion_sigma_I 4.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 7.000 _reflns.d_resolution_high 1.850 _reflns.number_obs 5634 _reflns.number_all ? _reflns.percent_possible_obs 91.440 _reflns.pdbx_Rmerge_I_obs 0.0220000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.180 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 1.854 _reflns_shell.d_res_low 1.900 _reflns_shell.percent_possible_all 80.70 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 14.67 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 360D _refine.ls_number_reflns_obs 5386 _refine.ls_number_reflns_all 5634 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.000 _refine.ls_d_res_high 1.850 _refine.ls_percent_reflns_obs 91.400 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1660000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 2904 _refine.ls_number_restraints 3734 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-22' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method NONE _refine.details ? _refine.pdbx_starting_model 'NDB ENTRY GDL045 (PDB: 289D)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case 'STEREOCHEMISTRY OF LIGAND FROM MM CALCULATIONS' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 360D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 260 _refine_analyze.occupancy_sum_non_hydrogen 733 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 219 _refine_hist.number_atoms_total 733 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 7.000 # _pdbx_refine.entry_id 360D _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1700000 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1660000 _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 5386 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 360D _struct.title ;STRUCTURE OF 2,5-BIS{[4-(N-ETHYLAMIDINO)PHENYL]}FURAN COMPLEXED TO 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'. A MINOR GROOVE DRUG COMPLEX, SHOWING PATTERNS OF GROOVE HYDRATION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 360D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 240 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 241 1_555 ? ? ? ? ? ? ? 1.944 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 242 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 243 1_555 ? ? ? ? ? ? ? 1.890 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 244 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 245 1_555 ? ? ? ? ? ? ? 2.228 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' AC2 Software B BPF 25 ? 12 'BINDING SITE FOR RESIDUE BPF B 25' 'DRUG BINDING SITE' ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH A 240 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH A 241 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH A 242 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 243 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 244 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 245 . ? 1_555 ? 7 AC2 12 DA A 6 ? DA A 6 . ? 1_555 ? 8 AC2 12 DT A 7 ? DT A 7 . ? 1_555 ? 9 AC2 12 DT A 8 ? DT A 8 . ? 1_555 ? 10 AC2 12 DC A 9 ? DC A 9 . ? 1_555 ? 11 AC2 12 HOH E . ? HOH A 197 . ? 1_555 ? 12 AC2 12 DA B 6 ? DA B 18 . ? 1_555 ? 13 AC2 12 DT B 7 ? DT B 19 . ? 1_555 ? 14 AC2 12 DT B 8 ? DT B 20 . ? 1_555 ? 15 AC2 12 DC B 9 ? DC B 21 . ? 1_555 ? 16 AC2 12 HOH F . ? HOH B 45 . ? 1_555 ? 17 AC2 12 HOH F . ? HOH B 72 . ? 1_555 ? 18 AC2 12 HOH F . ? HOH B 201 . ? 1_555 ? # _database_PDB_matrix.entry_id 360D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 360D _atom_sites.fract_transf_matrix[1][1] 0.040950 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025038 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015179 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 26 26 MG MO6 A . D 3 BPF 1 25 25 BPF DAG B . E 4 HOH 1 27 27 HOH HOH A . E 4 HOH 2 28 28 HOH HOH A . E 4 HOH 3 29 29 HOH HOH A . E 4 HOH 4 31 31 HOH HOH A . E 4 HOH 5 32 32 HOH HOH A . E 4 HOH 6 33 33 HOH HOH A . E 4 HOH 7 34 34 HOH HOH A . E 4 HOH 8 36 36 HOH HOH A . E 4 HOH 9 37 37 HOH HOH A . E 4 HOH 10 39 39 HOH HOH A . E 4 HOH 11 40 40 HOH HOH A . E 4 HOH 12 41 41 HOH HOH A . E 4 HOH 13 43 43 HOH HOH A . E 4 HOH 14 46 46 HOH HOH A . E 4 HOH 15 47 47 HOH HOH A . E 4 HOH 16 50 50 HOH HOH A . E 4 HOH 17 51 51 HOH HOH A . E 4 HOH 18 52 52 HOH HOH A . E 4 HOH 19 54 54 HOH HOH A . E 4 HOH 20 56 56 HOH HOH A . E 4 HOH 21 57 57 HOH HOH A . E 4 HOH 22 61 61 HOH HOH A . E 4 HOH 23 62 62 HOH HOH A . E 4 HOH 24 65 65 HOH HOH A . E 4 HOH 25 66 66 HOH HOH A . E 4 HOH 26 69 69 HOH HOH A . E 4 HOH 27 71 71 HOH HOH A . E 4 HOH 28 74 74 HOH HOH A . E 4 HOH 29 75 75 HOH HOH A . E 4 HOH 30 78 78 HOH HOH A . E 4 HOH 31 79 79 HOH HOH A . E 4 HOH 32 80 80 HOH HOH A . E 4 HOH 33 81 81 HOH HOH A . E 4 HOH 34 82 82 HOH HOH A . E 4 HOH 35 86 86 HOH HOH A . E 4 HOH 36 88 88 HOH HOH A . E 4 HOH 37 91 91 HOH HOH A . E 4 HOH 38 92 92 HOH HOH A . E 4 HOH 39 93 93 HOH HOH A . E 4 HOH 40 96 96 HOH HOH A . E 4 HOH 41 97 97 HOH HOH A . E 4 HOH 42 99 99 HOH HOH A . E 4 HOH 43 100 100 HOH HOH A . E 4 HOH 44 102 102 HOH HOH A . E 4 HOH 45 104 104 HOH HOH A . E 4 HOH 46 105 105 HOH HOH A . E 4 HOH 47 106 106 HOH HOH A . E 4 HOH 48 107 107 HOH HOH A . E 4 HOH 49 108 108 HOH HOH A . E 4 HOH 50 110 110 HOH HOH A . E 4 HOH 51 111 111 HOH HOH A . E 4 HOH 52 113 113 HOH HOH A . E 4 HOH 53 114 114 HOH HOH A . E 4 HOH 54 117 117 HOH HOH A . E 4 HOH 55 122 122 HOH HOH A . E 4 HOH 56 126 126 HOH HOH A . E 4 HOH 57 127 127 HOH HOH A . E 4 HOH 58 129 129 HOH HOH A . E 4 HOH 59 130 130 HOH HOH A . E 4 HOH 60 131 131 HOH HOH A . E 4 HOH 61 133 133 HOH HOH A . E 4 HOH 62 135 135 HOH HOH A . E 4 HOH 63 137 137 HOH HOH A . E 4 HOH 64 145 145 HOH HOH A . E 4 HOH 65 147 147 HOH HOH A . E 4 HOH 66 149 149 HOH HOH A . E 4 HOH 67 152 152 HOH HOH A . E 4 HOH 68 154 154 HOH HOH A . E 4 HOH 69 157 157 HOH HOH A . E 4 HOH 70 158 158 HOH HOH A . E 4 HOH 71 160 160 HOH HOH A . E 4 HOH 72 163 163 HOH HOH A . E 4 HOH 73 166 166 HOH HOH A . E 4 HOH 74 167 167 HOH HOH A . E 4 HOH 75 170 170 HOH HOH A . E 4 HOH 76 172 172 HOH HOH A . E 4 HOH 77 173 173 HOH HOH A . E 4 HOH 78 175 175 HOH HOH A . E 4 HOH 79 178 178 HOH HOH A . E 4 HOH 80 180 180 HOH HOH A . E 4 HOH 81 181 181 HOH HOH A . E 4 HOH 82 182 182 HOH HOH A . E 4 HOH 83 184 184 HOH HOH A . E 4 HOH 84 185 185 HOH HOH A . E 4 HOH 85 189 189 HOH HOH A . E 4 HOH 86 190 190 HOH HOH A . E 4 HOH 87 191 191 HOH HOH A . E 4 HOH 88 192 192 HOH HOH A . E 4 HOH 89 196 196 HOH HOH A . E 4 HOH 90 197 197 HOH HOH A . E 4 HOH 91 198 198 HOH HOH A . E 4 HOH 92 199 199 HOH HOH A . E 4 HOH 93 206 206 HOH HOH A . E 4 HOH 94 207 207 HOH HOH A . E 4 HOH 95 211 211 HOH HOH A . E 4 HOH 96 213 213 HOH HOH A . E 4 HOH 97 216 216 HOH HOH A . E 4 HOH 98 218 218 HOH HOH A . E 4 HOH 99 222 222 HOH HOH A . E 4 HOH 100 232 232 HOH HOH A . E 4 HOH 101 233 233 HOH HOH A . E 4 HOH 102 235 235 HOH HOH A . E 4 HOH 103 236 236 HOH HOH A . E 4 HOH 104 237 237 HOH HOH A . E 4 HOH 105 240 26 HOH MO6 A . E 4 HOH 106 241 26 HOH MO6 A . E 4 HOH 107 242 26 HOH MO6 A . E 4 HOH 108 243 26 HOH MO6 A . E 4 HOH 109 244 26 HOH MO6 A . E 4 HOH 110 245 26 HOH MO6 A . F 4 HOH 1 30 30 HOH HOH B . F 4 HOH 2 35 35 HOH HOH B . F 4 HOH 3 38 38 HOH HOH B . F 4 HOH 4 42 42 HOH HOH B . F 4 HOH 5 44 44 HOH HOH B . F 4 HOH 6 45 45 HOH HOH B . F 4 HOH 7 48 48 HOH HOH B . F 4 HOH 8 49 49 HOH HOH B . F 4 HOH 9 53 53 HOH HOH B . F 4 HOH 10 55 55 HOH HOH B . F 4 HOH 11 58 58 HOH HOH B . F 4 HOH 12 59 59 HOH HOH B . F 4 HOH 13 60 60 HOH HOH B . F 4 HOH 14 63 63 HOH HOH B . F 4 HOH 15 64 64 HOH HOH B . F 4 HOH 16 67 67 HOH HOH B . F 4 HOH 17 68 68 HOH HOH B . F 4 HOH 18 70 70 HOH HOH B . F 4 HOH 19 72 72 HOH HOH B . F 4 HOH 20 73 73 HOH HOH B . F 4 HOH 21 76 76 HOH HOH B . F 4 HOH 22 77 77 HOH HOH B . F 4 HOH 23 83 83 HOH HOH B . F 4 HOH 24 84 84 HOH HOH B . F 4 HOH 25 85 85 HOH HOH B . F 4 HOH 26 87 87 HOH HOH B . F 4 HOH 27 89 89 HOH HOH B . F 4 HOH 28 90 90 HOH HOH B . F 4 HOH 29 94 94 HOH HOH B . F 4 HOH 30 95 95 HOH HOH B . F 4 HOH 31 98 98 HOH HOH B . F 4 HOH 32 101 101 HOH HOH B . F 4 HOH 33 103 103 HOH HOH B . F 4 HOH 34 109 109 HOH HOH B . F 4 HOH 35 112 112 HOH HOH B . F 4 HOH 36 115 115 HOH HOH B . F 4 HOH 37 116 116 HOH HOH B . F 4 HOH 38 118 118 HOH HOH B . F 4 HOH 39 119 119 HOH HOH B . F 4 HOH 40 120 120 HOH HOH B . F 4 HOH 41 121 121 HOH HOH B . F 4 HOH 42 123 123 HOH HOH B . F 4 HOH 43 124 124 HOH HOH B . F 4 HOH 44 125 125 HOH HOH B . F 4 HOH 45 128 128 HOH HOH B . F 4 HOH 46 132 132 HOH HOH B . F 4 HOH 47 134 134 HOH HOH B . F 4 HOH 48 136 136 HOH HOH B . F 4 HOH 49 138 138 HOH HOH B . F 4 HOH 50 139 139 HOH HOH B . F 4 HOH 51 140 140 HOH HOH B . F 4 HOH 52 141 141 HOH HOH B . F 4 HOH 53 142 142 HOH HOH B . F 4 HOH 54 143 143 HOH HOH B . F 4 HOH 55 144 144 HOH HOH B . F 4 HOH 56 146 146 HOH HOH B . F 4 HOH 57 148 148 HOH HOH B . F 4 HOH 58 150 150 HOH HOH B . F 4 HOH 59 151 151 HOH HOH B . F 4 HOH 60 153 153 HOH HOH B . F 4 HOH 61 155 155 HOH HOH B . F 4 HOH 62 156 156 HOH HOH B . F 4 HOH 63 159 159 HOH HOH B . F 4 HOH 64 161 161 HOH HOH B . F 4 HOH 65 162 162 HOH HOH B . F 4 HOH 66 164 164 HOH HOH B . F 4 HOH 67 165 165 HOH HOH B . F 4 HOH 68 168 168 HOH HOH B . F 4 HOH 69 169 169 HOH HOH B . F 4 HOH 70 171 171 HOH HOH B . F 4 HOH 71 174 174 HOH HOH B . F 4 HOH 72 176 176 HOH HOH B . F 4 HOH 73 177 177 HOH HOH B . F 4 HOH 74 179 179 HOH HOH B . F 4 HOH 75 183 183 HOH HOH B . F 4 HOH 76 186 186 HOH HOH B . F 4 HOH 77 187 187 HOH HOH B . F 4 HOH 78 188 188 HOH HOH B . F 4 HOH 79 193 193 HOH HOH B . F 4 HOH 80 194 194 HOH HOH B . F 4 HOH 81 195 195 HOH HOH B . F 4 HOH 82 200 200 HOH HOH B . F 4 HOH 83 201 201 HOH HOH B . F 4 HOH 84 202 202 HOH HOH B . F 4 HOH 85 203 203 HOH HOH B . F 4 HOH 86 204 204 HOH HOH B . F 4 HOH 87 205 205 HOH HOH B . F 4 HOH 88 208 208 HOH HOH B . F 4 HOH 89 209 209 HOH HOH B . F 4 HOH 90 210 210 HOH HOH B . F 4 HOH 91 212 212 HOH HOH B . F 4 HOH 92 214 214 HOH HOH B . F 4 HOH 93 215 215 HOH HOH B . F 4 HOH 94 217 217 HOH HOH B . F 4 HOH 95 219 219 HOH HOH B . F 4 HOH 96 220 220 HOH HOH B . F 4 HOH 97 221 221 HOH HOH B . F 4 HOH 98 223 223 HOH HOH B . F 4 HOH 99 224 224 HOH HOH B . F 4 HOH 100 225 225 HOH HOH B . F 4 HOH 101 226 226 HOH HOH B . F 4 HOH 102 227 227 HOH HOH B . F 4 HOH 103 228 228 HOH HOH B . F 4 HOH 104 229 229 HOH HOH B . F 4 HOH 105 230 230 HOH HOH B . F 4 HOH 106 231 231 HOH HOH B . F 4 HOH 107 234 234 HOH HOH B . F 4 HOH 108 238 238 HOH HOH B . F 4 HOH 109 239 239 HOH HOH B . # _struct_site_keywords.site_id 'DRUG BINDING SITE' _struct_site_keywords.text 'MINOR GROOVE BINDER' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 240 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 241 ? 1_555 90.1 ? 2 O ? E HOH . ? A HOH 240 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 242 ? 1_555 171.3 ? 3 O ? E HOH . ? A HOH 241 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 242 ? 1_555 82.3 ? 4 O ? E HOH . ? A HOH 240 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 243 ? 1_555 94.1 ? 5 O ? E HOH . ? A HOH 241 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 243 ? 1_555 172.5 ? 6 O ? E HOH . ? A HOH 242 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 243 ? 1_555 93.9 ? 7 O ? E HOH . ? A HOH 240 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 244 ? 1_555 92.5 ? 8 O ? E HOH . ? A HOH 241 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 244 ? 1_555 81.7 ? 9 O ? E HOH . ? A HOH 242 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 244 ? 1_555 90.6 ? 10 O ? E HOH . ? A HOH 243 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 244 ? 1_555 91.9 ? 11 O ? E HOH . ? A HOH 240 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 245 ? 1_555 79.9 ? 12 O ? E HOH . ? A HOH 241 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 245 ? 1_555 88.0 ? 13 O ? E HOH . ? A HOH 242 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 245 ? 1_555 95.6 ? 14 O ? E HOH . ? A HOH 243 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 245 ? 1_555 98.9 ? 15 O ? E HOH . ? A HOH 244 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 245 ? 1_555 167.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-04-25 5 'Structure model' 1 4 2018-03-07 6 'Structure model' 1 5 2020-04-08 7 'Structure model' 1 6 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Data collection' 5 6 'Structure model' 'Structure summary' 6 7 'Structure model' 'Database references' 7 7 'Structure model' 'Derived calculations' 8 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' diffrn_source 2 6 'Structure model' audit_author 3 7 'Structure model' database_2 4 7 'Structure model' pdbx_initial_refinement_model 5 7 'Structure model' pdbx_struct_conn_angle 6 7 'Structure model' struct_conn 7 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.source' 2 6 'Structure model' '_audit_author.name' 3 7 'Structure model' '_database_2.pdbx_DOI' 4 7 'Structure model' '_database_2.pdbx_database_accession' 5 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 7 'Structure model' '_pdbx_struct_conn_angle.value' 8 7 'Structure model' '_struct_conn.pdbx_dist_value' 9 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 11 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 12 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language SHELXL-97 refinement . ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 123.11 114.30 8.81 1.40 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 96.76 108.00 -11.24 0.70 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 101.81 108.00 -6.19 0.70 N 4 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 101.04 108.00 -6.96 0.70 N 5 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 101.42 108.00 -6.58 0.70 N 6 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 103.58 108.00 -4.42 0.70 N 7 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 102.65 108.00 -5.35 0.70 N 8 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 102.03 108.00 -5.97 0.70 N 9 1 N1 A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 123.18 114.30 8.88 1.40 N 10 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 95.40 108.00 -12.60 0.70 N 11 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 122.63 118.90 3.73 0.60 N 12 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.14 102.40 -5.26 0.80 N 13 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 97.65 108.00 -10.35 0.70 N 14 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 103.20 108.00 -4.80 0.70 N 15 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 93.30 109.40 -16.10 0.80 N 16 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 103.69 108.00 -4.31 0.70 N 17 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 97.65 108.00 -10.35 0.70 N 18 1 N1 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 115.52 119.90 -4.38 0.60 N 19 1 C5 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 132.75 128.60 4.15 0.60 N 20 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 102.32 108.00 -5.68 0.70 N 21 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 102.88 108.00 -5.12 0.70 N 22 1 N1 B DT 19 ? ? "C1'" B DT 19 ? ? "C2'" B DT 19 ? ? 122.74 114.30 8.44 1.40 N 23 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 101.08 108.00 -6.92 0.70 N 24 1 N1 B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 122.75 114.30 8.45 1.40 N 25 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 100.91 108.00 -7.09 0.70 N 26 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 96.44 108.00 -11.56 0.70 N 27 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 100.65 108.00 -7.35 0.70 N # _ndb_struct_conf_na.entry_id 360D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.237 -0.270 -0.269 7.371 -18.130 -1.282 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.271 -0.193 0.302 4.084 -9.407 -2.198 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.170 -0.046 0.063 -2.278 -7.727 -0.737 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.177 -0.122 -0.060 10.803 -5.924 -1.331 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.098 -0.177 -0.346 7.536 -17.196 2.023 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.203 -0.152 -0.212 -0.102 -17.334 7.716 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.174 -0.060 -0.026 -2.014 -15.352 7.708 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.038 -0.192 -0.239 -5.614 -17.307 4.505 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.200 -0.064 -0.257 -4.995 -9.664 -1.122 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.230 -0.108 0.018 8.596 -7.082 1.735 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.123 -0.204 0.364 6.196 -23.221 -2.585 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.243 -0.179 -0.424 4.257 20.205 -3.615 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.276 0.054 3.498 -4.678 8.939 32.470 -1.452 -0.337 3.400 15.525 8.125 33.961 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.646 0.593 3.381 2.559 -4.189 42.975 1.227 -0.618 3.343 -5.695 -3.480 43.241 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.456 0.649 3.220 1.983 9.542 26.731 -0.903 1.391 3.215 19.821 -4.120 28.422 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.202 0.173 3.361 2.977 3.645 37.582 -0.216 0.084 3.368 5.631 -4.599 37.865 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.301 -0.255 3.423 -1.361 4.382 35.800 -1.056 -0.686 3.356 7.092 2.203 36.083 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.043 -0.632 3.228 -1.448 0.881 29.981 -1.397 -0.376 3.203 1.701 2.797 30.027 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.283 -0.224 3.277 3.160 1.951 36.175 -0.629 0.892 3.226 3.131 -5.072 36.359 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.255 0.355 3.298 1.666 -1.362 40.992 0.655 0.546 3.273 -1.943 -2.377 41.046 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.546 1.112 3.193 -3.354 8.645 25.843 0.166 -1.998 3.290 18.584 7.210 27.430 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.128 0.910 3.409 -6.350 -13.263 44.703 2.272 0.875 3.156 -16.905 8.094 46.941 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.197 0.729 3.676 5.541 -9.132 36.021 2.478 -1.046 3.533 -14.382 -8.727 37.520 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "N,N'-(furan-2,5-diylbis{benzene-4,1-diyl[(Z)-aminomethylylidene]})diethanaminium" BPF 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 289D _pdbx_initial_refinement_model.details 'NDB ENTRY GDL045 (PDB: 289D)' #