data_3A08 # _entry.id 3A08 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3A08 pdb_00003a08 10.2210/pdb3a08/pdb RCSB RCSB028647 ? ? WWPDB D_1000028647 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D3H 'The structure was refined against the same intensities with the twinned data.' unspecified PDB 2CUO 'The similar collagen-like peptide.' unspecified PDB 2D3F 'The related host-guest peptide.' unspecified PDB 1X1K 'The related host-guest peptide' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3A08 _pdbx_database_status.recvd_initial_deposition_date 2009-03-06 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Okuyama, K.' 1 'Morimoto, T.' 2 'Wu, G.' 3 'Noguchi, K.' 4 'Mizuno, K.' 5 'Bachinger, H.P.' 6 # _citation.id primary _citation.title ;Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 66 _citation.page_first 88 _citation.page_last 96 _citation.year 2010 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20057053 _citation.pdbx_database_id_DOI 10.1107/S0907444909046642 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Okuyama, K.' 1 ? primary 'Morimoto, T.' 2 ? primary 'Narita, H.' 3 ? primary 'Kawaguchi, T.' 4 ? primary 'Mizuno, K.' 5 ? primary 'Bachinger, H.P.' 6 ? primary 'Wu, G.' 7 ? primary 'Noguchi, K.' 8 ? # _cell.entry_id 3A08 _cell.length_a 25.987 _cell.length_b 26.668 _cell.length_c 79.843 _cell.angle_alpha 90.00 _cell.angle_beta 90.03 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3A08 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'collagen-like peptide' 2311.547 6 ? ? ? ? 2 water nat water 18.015 239 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'PPGPPGPPGPPG(HYP)(HYP)GPPGPPGPPGPPG' _entity_poly.pdbx_seq_one_letter_code_can PPGPPGPPGPPGPPGPPGPPGPPGPPG _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 PRO n 1 3 GLY n 1 4 PRO n 1 5 PRO n 1 6 GLY n 1 7 PRO n 1 8 PRO n 1 9 GLY n 1 10 PRO n 1 11 PRO n 1 12 GLY n 1 13 HYP n 1 14 HYP n 1 15 GLY n 1 16 PRO n 1 17 PRO n 1 18 GLY n 1 19 PRO n 1 20 PRO n 1 21 GLY n 1 22 PRO n 1 23 PRO n 1 24 GLY n 1 25 PRO n 1 26 PRO n 1 27 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THIS PEPTIDE WAS CHEMICALLY SYSTHESIZED.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3A08 _struct_ref.pdbx_db_accession 3A08 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3A08 A 1 ? 27 ? 3A08 1 ? 27 ? 1 27 2 1 3A08 B 1 ? 27 ? 3A08 1 ? 27 ? 1 27 3 1 3A08 C 1 ? 27 ? 3A08 1 ? 27 ? 1 27 4 1 3A08 D 1 ? 27 ? 3A08 1 ? 27 ? 1 27 5 1 3A08 E 1 ? 27 ? 3A08 1 ? 27 ? 1 27 6 1 3A08 F 1 ? 27 ? 3A08 1 ? 27 ? 1 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # _exptl.entry_id 3A08 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 38.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '16.25%(w/v) PEG 1000, 0.05M acetate buffer, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 95.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-09-30 _diffrn_detector.details '1.1-M-LONG BENT-PLANE MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.978 # _reflns.entry_id 3A08 _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.22 _reflns.d_resolution_low 26.6 _reflns.number_all ? _reflns.number_obs 32577 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.52 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.22 _reflns_shell.d_res_low 1.26 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.287 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 3.79 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3A08 _refine.ls_number_reflns_obs 32044 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.22 _refine.ls_percent_reflns_obs 92.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.139 _refine.ls_R_factor_R_free 0.216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1627 _refine.ls_number_parameters 9886 _refine.ls_number_restraints 13177 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'THE STRUCTURE WAS ANALYZED AGAINST DETWINNED DIFFRACTION DATA.' _refine.pdbx_starting_model 2CUO _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model anisotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3A08 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 793.00 _refine_analyze.occupancy_sum_non_hydrogen 1098.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 859 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 239 _refine_hist.number_atoms_total 1098 _refine_hist.d_res_high 1.22 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.030 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0311 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.073 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.061 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.058 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.103 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 6 1.22 1.27 . 0.177 . . . . . . . 3078 . 'X-RAY DIFFRACTION' 6 1.27 1.32 . 0.158 . . . . . . . 3183 . 'X-RAY DIFFRACTION' 6 1.32 1.38 . 0.147 . . . . . . . 2886 . 'X-RAY DIFFRACTION' 6 1.38 1.45 . 0.151 . . . . . . . 3046 . 'X-RAY DIFFRACTION' 6 1.45 1.54 . 0.136 . . . . . . . 3119 . 'X-RAY DIFFRACTION' 6 1.54 1.66 . 0.128 . . . . . . . 3018 . 'X-RAY DIFFRACTION' # _pdbx_refine.entry_id 3A08 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1388 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.135 _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 26672 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 3A08 _struct.title 'Structure of (PPG)4-OOG-(PPG)4, monoclinic, twinned crystal' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3A08 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'collagen helix, host-guest peptide, STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 12 C ? ? ? 1_555 A HYP 13 N ? ? A GLY 12 A HYP 13 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale both ? A HYP 13 C ? ? ? 1_555 A HYP 14 N ? ? A HYP 13 A HYP 14 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A HYP 14 C ? ? ? 1_555 A GLY 15 N ? ? A HYP 14 A GLY 15 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale4 covale both ? B GLY 12 C ? ? ? 1_555 B HYP 13 N ? ? B GLY 12 B HYP 13 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale5 covale both ? B HYP 13 C ? ? ? 1_555 B HYP 14 N ? ? B HYP 13 B HYP 14 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? B HYP 14 C ? ? ? 1_555 B GLY 15 N ? ? B HYP 14 B GLY 15 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale7 covale both ? C GLY 12 C ? ? ? 1_555 C HYP 13 N ? ? C GLY 12 C HYP 13 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale8 covale both ? C HYP 13 C ? ? ? 1_555 C HYP 14 N ? ? C HYP 13 C HYP 14 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? C HYP 14 C ? ? ? 1_555 C GLY 15 N ? ? C HYP 14 C GLY 15 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale10 covale both ? D GLY 12 C ? ? ? 1_555 D HYP 13 N ? ? D GLY 12 D HYP 13 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale11 covale both ? D HYP 13 C ? ? ? 1_555 D HYP 14 N ? ? D HYP 13 D HYP 14 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? D HYP 14 C ? ? ? 1_555 D GLY 15 N ? ? D HYP 14 D GLY 15 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale13 covale both ? E GLY 12 C ? ? ? 1_555 E HYP 13 N ? ? E GLY 12 E HYP 13 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale14 covale both ? E HYP 13 C ? ? ? 1_555 E HYP 14 N ? ? E HYP 13 E HYP 14 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale15 covale both ? E HYP 14 C ? ? ? 1_555 E GLY 15 N ? ? E HYP 14 E GLY 15 1_555 ? ? ? ? ? ? ? 1.363 ? ? covale16 covale both ? F GLY 12 C ? ? ? 1_555 F HYP 13 N ? ? F GLY 12 F HYP 13 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale17 covale both ? F HYP 13 C ? ? ? 1_555 F HYP 14 N ? ? F HYP 13 F HYP 14 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale18 covale both ? F HYP 14 C ? ? ? 1_555 F GLY 15 N ? ? F HYP 14 F GLY 15 1_555 ? ? ? ? ? ? ? 1.360 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3A08 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3A08 _atom_sites.fract_transf_matrix[1][1] 0.038481 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000020 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037498 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012525 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 HYP 13 13 13 HYP HYP A . n A 1 14 HYP 14 14 14 HYP HYP A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 GLY 24 24 ? ? ? A . n A 1 25 PRO 25 25 ? ? ? A . n A 1 26 PRO 26 26 ? ? ? A . n A 1 27 GLY 27 27 ? ? ? A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 PRO 2 2 2 PRO PRO B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 PRO 5 5 5 PRO PRO B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 PRO 7 7 7 PRO PRO B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 PRO 11 11 11 PRO PRO B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 HYP 13 13 13 HYP HYP B . n B 1 14 HYP 14 14 14 HYP HYP B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 PRO 16 16 16 PRO PRO B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 PRO 19 19 19 PRO PRO B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 GLY 24 24 ? ? ? B . n B 1 25 PRO 25 25 ? ? ? B . n B 1 26 PRO 26 26 ? ? ? B . n B 1 27 GLY 27 27 ? ? ? B . n C 1 1 PRO 1 1 ? ? ? C . n C 1 2 PRO 2 2 ? ? ? C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 PRO 4 4 4 PRO PRO C . n C 1 5 PRO 5 5 5 PRO PRO C . n C 1 6 GLY 6 6 6 GLY GLY C . n C 1 7 PRO 7 7 7 PRO PRO C . n C 1 8 PRO 8 8 8 PRO PRO C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 PRO 10 10 10 PRO PRO C . n C 1 11 PRO 11 11 11 PRO PRO C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 HYP 13 13 13 HYP HYP C . n C 1 14 HYP 14 14 14 HYP HYP C . n C 1 15 GLY 15 15 15 GLY GLY C . n C 1 16 PRO 16 16 16 PRO PRO C . n C 1 17 PRO 17 17 17 PRO PRO C . n C 1 18 GLY 18 18 18 GLY GLY C . n C 1 19 PRO 19 19 19 PRO PRO C . n C 1 20 PRO 20 20 20 PRO PRO C . n C 1 21 GLY 21 21 21 GLY GLY C . n C 1 22 PRO 22 22 22 PRO PRO C . n C 1 23 PRO 23 23 23 PRO PRO C . n C 1 24 GLY 24 24 24 GLY GLY C . n C 1 25 PRO 25 25 25 PRO PRO C . n C 1 26 PRO 26 26 ? ? ? C . n C 1 27 GLY 27 27 ? ? ? C . n D 1 1 PRO 1 1 ? ? ? D . n D 1 2 PRO 2 2 ? ? ? D . n D 1 3 GLY 3 3 3 GLY GLY D . n D 1 4 PRO 4 4 4 PRO PRO D . n D 1 5 PRO 5 5 5 PRO PRO D . n D 1 6 GLY 6 6 6 GLY GLY D . n D 1 7 PRO 7 7 7 PRO PRO D . n D 1 8 PRO 8 8 8 PRO PRO D . n D 1 9 GLY 9 9 9 GLY GLY D . n D 1 10 PRO 10 10 10 PRO PRO D . n D 1 11 PRO 11 11 11 PRO PRO D . n D 1 12 GLY 12 12 12 GLY GLY D . n D 1 13 HYP 13 13 13 HYP HYP D . n D 1 14 HYP 14 14 14 HYP HYP D . n D 1 15 GLY 15 15 15 GLY GLY D . n D 1 16 PRO 16 16 16 PRO PRO D . n D 1 17 PRO 17 17 17 PRO PRO D . n D 1 18 GLY 18 18 18 GLY GLY D . n D 1 19 PRO 19 19 19 PRO PRO D . n D 1 20 PRO 20 20 20 PRO PRO D . n D 1 21 GLY 21 21 21 GLY GLY D . n D 1 22 PRO 22 22 22 PRO PRO D . n D 1 23 PRO 23 23 23 PRO PRO D . n D 1 24 GLY 24 24 24 GLY GLY D . n D 1 25 PRO 25 25 25 PRO PRO D . n D 1 26 PRO 26 26 26 PRO PRO D . n D 1 27 GLY 27 27 27 GLY GLY D . n E 1 1 PRO 1 1 ? ? ? E . n E 1 2 PRO 2 2 ? ? ? E . n E 1 3 GLY 3 3 3 GLY GLY E . n E 1 4 PRO 4 4 4 PRO PRO E . n E 1 5 PRO 5 5 5 PRO PRO E . n E 1 6 GLY 6 6 6 GLY GLY E . n E 1 7 PRO 7 7 7 PRO PRO E . n E 1 8 PRO 8 8 8 PRO PRO E . n E 1 9 GLY 9 9 9 GLY GLY E . n E 1 10 PRO 10 10 10 PRO PRO E . n E 1 11 PRO 11 11 11 PRO PRO E . n E 1 12 GLY 12 12 12 GLY GLY E . n E 1 13 HYP 13 13 13 HYP HYP E . n E 1 14 HYP 14 14 14 HYP HYP E . n E 1 15 GLY 15 15 15 GLY GLY E . n E 1 16 PRO 16 16 16 PRO PRO E . n E 1 17 PRO 17 17 17 PRO PRO E . n E 1 18 GLY 18 18 18 GLY GLY E . n E 1 19 PRO 19 19 19 PRO PRO E . n E 1 20 PRO 20 20 20 PRO PRO E . n E 1 21 GLY 21 21 21 GLY GLY E . n E 1 22 PRO 22 22 22 PRO PRO E . n E 1 23 PRO 23 23 23 PRO PRO E . n E 1 24 GLY 24 24 24 GLY GLY E . n E 1 25 PRO 25 25 25 PRO PRO E . n E 1 26 PRO 26 26 26 PRO PRO E . n E 1 27 GLY 27 27 ? ? ? E . n F 1 1 PRO 1 1 ? ? ? F . n F 1 2 PRO 2 2 ? ? ? F . n F 1 3 GLY 3 3 ? ? ? F . n F 1 4 PRO 4 4 ? ? ? F . n F 1 5 PRO 5 5 5 PRO PRO F . n F 1 6 GLY 6 6 6 GLY GLY F . n F 1 7 PRO 7 7 7 PRO PRO F . n F 1 8 PRO 8 8 8 PRO PRO F . n F 1 9 GLY 9 9 9 GLY GLY F . n F 1 10 PRO 10 10 10 PRO PRO F . n F 1 11 PRO 11 11 11 PRO PRO F . n F 1 12 GLY 12 12 12 GLY GLY F . n F 1 13 HYP 13 13 13 HYP HYP F . n F 1 14 HYP 14 14 14 HYP HYP F . n F 1 15 GLY 15 15 15 GLY GLY F . n F 1 16 PRO 16 16 16 PRO PRO F . n F 1 17 PRO 17 17 17 PRO PRO F . n F 1 18 GLY 18 18 18 GLY GLY F . n F 1 19 PRO 19 19 19 PRO PRO F . n F 1 20 PRO 20 20 20 PRO PRO F . n F 1 21 GLY 21 21 21 GLY GLY F . n F 1 22 PRO 22 22 22 PRO PRO F . n F 1 23 PRO 23 23 23 PRO PRO F . n F 1 24 GLY 24 24 24 GLY GLY F . n F 1 25 PRO 25 25 25 PRO PRO F . n F 1 26 PRO 26 26 26 PRO PRO F . n F 1 27 GLY 27 27 27 GLY GLY F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HOH 1 101 101 HOH HOH A . G 2 HOH 2 102 102 HOH HOH A . G 2 HOH 3 103 103 HOH HOH A . G 2 HOH 4 104 104 HOH HOH A . G 2 HOH 5 107 107 HOH HOH A . G 2 HOH 6 108 108 HOH HOH A . G 2 HOH 7 109 109 HOH HOH A . G 2 HOH 8 110 110 HOH HOH A . G 2 HOH 9 111 111 HOH HOH A . G 2 HOH 10 112 112 HOH HOH A . G 2 HOH 11 113 113 HOH HOH A . G 2 HOH 12 114 114 HOH HOH A . G 2 HOH 13 115 115 HOH HOH A . G 2 HOH 14 116 116 HOH HOH A . G 2 HOH 15 117 117 HOH HOH A . G 2 HOH 16 118 118 HOH HOH A . G 2 HOH 17 119 119 HOH HOH A . G 2 HOH 18 120 120 HOH HOH A . G 2 HOH 19 121 121 HOH HOH A . G 2 HOH 20 122 122 HOH HOH A . G 2 HOH 21 123 123 HOH HOH A . G 2 HOH 22 242 242 HOH HOH A . G 2 HOH 23 245 245 HOH HOH A . G 2 HOH 24 264 264 HOH HOH A . G 2 HOH 25 289 289 HOH HOH A . G 2 HOH 26 291 291 HOH HOH A . G 2 HOH 27 297 297 HOH HOH A . G 2 HOH 28 313 313 HOH HOH A . G 2 HOH 29 315 315 HOH HOH A . G 2 HOH 30 319 319 HOH HOH A . G 2 HOH 31 321 321 HOH HOH A . G 2 HOH 32 325 325 HOH HOH A . G 2 HOH 33 332 332 HOH HOH A . H 2 HOH 1 124 124 HOH HOH B . H 2 HOH 2 125 125 HOH HOH B . H 2 HOH 3 126 126 HOH HOH B . H 2 HOH 4 127 127 HOH HOH B . H 2 HOH 5 128 128 HOH HOH B . H 2 HOH 6 129 129 HOH HOH B . H 2 HOH 7 130 130 HOH HOH B . H 2 HOH 8 131 131 HOH HOH B . H 2 HOH 9 132 132 HOH HOH B . H 2 HOH 10 133 133 HOH HOH B . H 2 HOH 11 134 134 HOH HOH B . H 2 HOH 12 135 135 HOH HOH B . H 2 HOH 13 136 136 HOH HOH B . H 2 HOH 14 137 137 HOH HOH B . H 2 HOH 15 138 138 HOH HOH B . H 2 HOH 16 139 139 HOH HOH B . H 2 HOH 17 140 140 HOH HOH B . H 2 HOH 18 141 141 HOH HOH B . H 2 HOH 19 142 142 HOH HOH B . H 2 HOH 20 143 143 HOH HOH B . H 2 HOH 21 144 144 HOH HOH B . H 2 HOH 22 145 145 HOH HOH B . H 2 HOH 23 233 233 HOH HOH B . H 2 HOH 24 234 234 HOH HOH B . H 2 HOH 25 236 236 HOH HOH B . H 2 HOH 26 244 244 HOH HOH B . H 2 HOH 27 252 252 HOH HOH B . H 2 HOH 28 259 259 HOH HOH B . H 2 HOH 29 260 260 HOH HOH B . H 2 HOH 30 261 261 HOH HOH B . H 2 HOH 31 270 270 HOH HOH B . H 2 HOH 32 279 279 HOH HOH B . H 2 HOH 33 282 282 HOH HOH B . H 2 HOH 34 285 285 HOH HOH B . H 2 HOH 35 292 292 HOH HOH B . H 2 HOH 36 317 317 HOH HOH B . H 2 HOH 37 320 320 HOH HOH B . H 2 HOH 38 336 336 HOH HOH B . H 2 HOH 39 337 337 HOH HOH B . I 2 HOH 1 105 105 HOH HOH C . I 2 HOH 2 146 146 HOH HOH C . I 2 HOH 3 147 147 HOH HOH C . I 2 HOH 4 148 148 HOH HOH C . I 2 HOH 5 149 149 HOH HOH C . I 2 HOH 6 150 150 HOH HOH C . I 2 HOH 7 151 151 HOH HOH C . I 2 HOH 8 152 152 HOH HOH C . I 2 HOH 9 153 153 HOH HOH C . I 2 HOH 10 154 154 HOH HOH C . I 2 HOH 11 155 155 HOH HOH C . I 2 HOH 12 156 156 HOH HOH C . I 2 HOH 13 157 157 HOH HOH C . I 2 HOH 14 158 158 HOH HOH C . I 2 HOH 15 159 159 HOH HOH C . I 2 HOH 16 160 160 HOH HOH C . I 2 HOH 17 161 161 HOH HOH C . I 2 HOH 18 162 162 HOH HOH C . I 2 HOH 19 163 163 HOH HOH C . I 2 HOH 20 164 164 HOH HOH C . I 2 HOH 21 238 238 HOH HOH C . I 2 HOH 22 248 248 HOH HOH C . I 2 HOH 23 258 258 HOH HOH C . I 2 HOH 24 263 263 HOH HOH C . I 2 HOH 25 274 274 HOH HOH C . I 2 HOH 26 275 275 HOH HOH C . I 2 HOH 27 294 294 HOH HOH C . I 2 HOH 28 296 296 HOH HOH C . I 2 HOH 29 298 298 HOH HOH C . I 2 HOH 30 299 299 HOH HOH C . I 2 HOH 31 302 302 HOH HOH C . I 2 HOH 32 306 306 HOH HOH C . I 2 HOH 33 307 307 HOH HOH C . I 2 HOH 34 311 311 HOH HOH C . I 2 HOH 35 328 328 HOH HOH C . I 2 HOH 36 331 331 HOH HOH C . I 2 HOH 37 335 335 HOH HOH C . I 2 HOH 38 338 338 HOH HOH C . I 2 HOH 39 339 339 HOH HOH C . J 2 HOH 1 165 165 HOH HOH D . J 2 HOH 2 166 166 HOH HOH D . J 2 HOH 3 167 167 HOH HOH D . J 2 HOH 4 168 168 HOH HOH D . J 2 HOH 5 169 169 HOH HOH D . J 2 HOH 6 170 170 HOH HOH D . J 2 HOH 7 171 171 HOH HOH D . J 2 HOH 8 172 172 HOH HOH D . J 2 HOH 9 173 173 HOH HOH D . J 2 HOH 10 174 174 HOH HOH D . J 2 HOH 11 175 175 HOH HOH D . J 2 HOH 12 176 176 HOH HOH D . J 2 HOH 13 177 177 HOH HOH D . J 2 HOH 14 178 178 HOH HOH D . J 2 HOH 15 179 179 HOH HOH D . J 2 HOH 16 180 180 HOH HOH D . J 2 HOH 17 181 181 HOH HOH D . J 2 HOH 18 182 182 HOH HOH D . J 2 HOH 19 183 183 HOH HOH D . J 2 HOH 20 184 184 HOH HOH D . J 2 HOH 21 185 185 HOH HOH D . J 2 HOH 22 186 186 HOH HOH D . J 2 HOH 23 187 187 HOH HOH D . J 2 HOH 24 201 201 HOH HOH D . J 2 HOH 25 237 237 HOH HOH D . J 2 HOH 26 250 250 HOH HOH D . J 2 HOH 27 253 253 HOH HOH D . J 2 HOH 28 254 254 HOH HOH D . J 2 HOH 29 256 256 HOH HOH D . J 2 HOH 30 257 257 HOH HOH D . J 2 HOH 31 262 262 HOH HOH D . J 2 HOH 32 265 265 HOH HOH D . J 2 HOH 33 267 267 HOH HOH D . J 2 HOH 34 269 269 HOH HOH D . J 2 HOH 35 272 272 HOH HOH D . J 2 HOH 36 277 277 HOH HOH D . J 2 HOH 37 286 286 HOH HOH D . J 2 HOH 38 288 288 HOH HOH D . J 2 HOH 39 290 290 HOH HOH D . J 2 HOH 40 295 295 HOH HOH D . J 2 HOH 41 303 303 HOH HOH D . J 2 HOH 42 305 305 HOH HOH D . J 2 HOH 43 314 314 HOH HOH D . J 2 HOH 44 322 322 HOH HOH D . J 2 HOH 45 323 323 HOH HOH D . J 2 HOH 46 324 324 HOH HOH D . J 2 HOH 47 330 330 HOH HOH D . J 2 HOH 48 333 333 HOH HOH D . K 2 HOH 1 188 188 HOH HOH E . K 2 HOH 2 189 189 HOH HOH E . K 2 HOH 3 190 190 HOH HOH E . K 2 HOH 4 191 191 HOH HOH E . K 2 HOH 5 192 192 HOH HOH E . K 2 HOH 6 193 193 HOH HOH E . K 2 HOH 7 194 194 HOH HOH E . K 2 HOH 8 195 195 HOH HOH E . K 2 HOH 9 196 196 HOH HOH E . K 2 HOH 10 197 197 HOH HOH E . K 2 HOH 11 198 198 HOH HOH E . K 2 HOH 12 199 199 HOH HOH E . K 2 HOH 13 200 200 HOH HOH E . K 2 HOH 14 202 202 HOH HOH E . K 2 HOH 15 203 203 HOH HOH E . K 2 HOH 16 204 204 HOH HOH E . K 2 HOH 17 205 205 HOH HOH E . K 2 HOH 18 206 206 HOH HOH E . K 2 HOH 19 207 207 HOH HOH E . K 2 HOH 20 208 208 HOH HOH E . K 2 HOH 21 209 209 HOH HOH E . K 2 HOH 22 239 239 HOH HOH E . K 2 HOH 23 246 246 HOH HOH E . K 2 HOH 24 249 249 HOH HOH E . K 2 HOH 25 268 268 HOH HOH E . K 2 HOH 26 276 276 HOH HOH E . K 2 HOH 27 278 278 HOH HOH E . K 2 HOH 28 280 280 HOH HOH E . K 2 HOH 29 284 284 HOH HOH E . K 2 HOH 30 293 293 HOH HOH E . K 2 HOH 31 300 300 HOH HOH E . K 2 HOH 32 301 301 HOH HOH E . K 2 HOH 33 318 318 HOH HOH E . K 2 HOH 34 326 326 HOH HOH E . K 2 HOH 35 327 327 HOH HOH E . K 2 HOH 36 329 329 HOH HOH E . K 2 HOH 37 334 334 HOH HOH E . L 2 HOH 1 106 106 HOH HOH F . L 2 HOH 2 210 210 HOH HOH F . L 2 HOH 3 211 211 HOH HOH F . L 2 HOH 4 212 212 HOH HOH F . L 2 HOH 5 213 213 HOH HOH F . L 2 HOH 6 214 214 HOH HOH F . L 2 HOH 7 215 215 HOH HOH F . L 2 HOH 8 216 216 HOH HOH F . L 2 HOH 9 217 217 HOH HOH F . L 2 HOH 10 218 218 HOH HOH F . L 2 HOH 11 219 219 HOH HOH F . L 2 HOH 12 220 220 HOH HOH F . L 2 HOH 13 221 221 HOH HOH F . L 2 HOH 14 222 222 HOH HOH F . L 2 HOH 15 223 223 HOH HOH F . L 2 HOH 16 224 224 HOH HOH F . L 2 HOH 17 225 225 HOH HOH F . L 2 HOH 18 226 226 HOH HOH F . L 2 HOH 19 227 227 HOH HOH F . L 2 HOH 20 228 228 HOH HOH F . L 2 HOH 21 229 229 HOH HOH F . L 2 HOH 22 230 230 HOH HOH F . L 2 HOH 23 231 231 HOH HOH F . L 2 HOH 24 232 232 HOH HOH F . L 2 HOH 25 235 235 HOH HOH F . L 2 HOH 26 240 240 HOH HOH F . L 2 HOH 27 241 241 HOH HOH F . L 2 HOH 28 243 243 HOH HOH F . L 2 HOH 29 247 247 HOH HOH F . L 2 HOH 30 251 251 HOH HOH F . L 2 HOH 31 255 255 HOH HOH F . L 2 HOH 32 266 266 HOH HOH F . L 2 HOH 33 271 271 HOH HOH F . L 2 HOH 34 273 273 HOH HOH F . L 2 HOH 35 281 281 HOH HOH F . L 2 HOH 36 283 283 HOH HOH F . L 2 HOH 37 287 287 HOH HOH F . L 2 HOH 38 304 304 HOH HOH F . L 2 HOH 39 308 308 HOH HOH F . L 2 HOH 40 309 309 HOH HOH F . L 2 HOH 41 310 310 HOH HOH F . L 2 HOH 42 312 312 HOH HOH F . L 2 HOH 43 316 316 HOH HOH F . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HYP 13 A HYP 13 ? PRO 4-HYDROXYPROLINE 2 A HYP 14 A HYP 14 ? PRO 4-HYDROXYPROLINE 3 B HYP 13 B HYP 13 ? PRO 4-HYDROXYPROLINE 4 B HYP 14 B HYP 14 ? PRO 4-HYDROXYPROLINE 5 C HYP 13 C HYP 13 ? PRO 4-HYDROXYPROLINE 6 C HYP 14 C HYP 14 ? PRO 4-HYDROXYPROLINE 7 D HYP 13 D HYP 13 ? PRO 4-HYDROXYPROLINE 8 D HYP 14 D HYP 14 ? PRO 4-HYDROXYPROLINE 9 E HYP 13 E HYP 13 ? PRO 4-HYDROXYPROLINE 10 E HYP 14 E HYP 14 ? PRO 4-HYDROXYPROLINE 11 F HYP 13 F HYP 13 ? PRO 4-HYDROXYPROLINE 12 F HYP 14 F HYP 14 ? PRO 4-HYDROXYPROLINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 3 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,G,H,I 2 1 D,E,F,J,K,L 3 1 A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3900 ? 1 MORE -24 ? 1 'SSA (A^2)' 3760 ? 2 'ABSA (A^2)' 4080 ? 2 MORE -26 ? 2 'SSA (A^2)' 3800 ? 3 'ABSA (A^2)' 8920 ? 3 MORE -64 ? 3 'SSA (A^2)' 6620 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-09-17 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 CrystalClear 'data collection' . ? 3 CrystalClear 'data reduction' . ? 4 CrystalClear 'data scaling' . ? 5 PHASER phasing . ? 6 # _pdbx_entry_details.sequence_details 'THE SEQUENCE ADOPTS TRIPLE-HELICAL STRUCTURE SIMILAR TO THE COLLAGEN-HELIX.' _pdbx_entry_details.entry_id 3A08 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 24 ? A GLY 24 2 1 Y 1 A PRO 25 ? A PRO 25 3 1 Y 1 A PRO 26 ? A PRO 26 4 1 Y 1 A GLY 27 ? A GLY 27 5 1 Y 1 B GLY 24 ? B GLY 24 6 1 Y 1 B PRO 25 ? B PRO 25 7 1 Y 1 B PRO 26 ? B PRO 26 8 1 Y 1 B GLY 27 ? B GLY 27 9 1 Y 1 C PRO 1 ? C PRO 1 10 1 Y 1 C PRO 2 ? C PRO 2 11 1 Y 1 C PRO 26 ? C PRO 26 12 1 Y 1 C GLY 27 ? C GLY 27 13 1 Y 1 D PRO 1 ? D PRO 1 14 1 Y 1 D PRO 2 ? D PRO 2 15 1 Y 1 E PRO 1 ? E PRO 1 16 1 Y 1 E PRO 2 ? E PRO 2 17 1 Y 1 E GLY 27 ? E GLY 27 18 1 Y 1 F PRO 1 ? F PRO 1 19 1 Y 1 F PRO 2 ? F PRO 2 20 1 Y 1 F GLY 3 ? F GLY 3 21 1 Y 1 F PRO 4 ? F PRO 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLY N N N N 1 GLY CA C N N 2 GLY C C N N 3 GLY O O N N 4 GLY OXT O N N 5 GLY H H N N 6 GLY H2 H N N 7 GLY HA2 H N N 8 GLY HA3 H N N 9 GLY HXT H N N 10 HOH O O N N 11 HOH H1 H N N 12 HOH H2 H N N 13 HYP N N N N 14 HYP CA C N S 15 HYP C C N N 16 HYP O O N N 17 HYP CB C N N 18 HYP CG C N R 19 HYP CD C N N 20 HYP OD1 O N N 21 HYP OXT O N N 22 HYP H H N N 23 HYP HA H N N 24 HYP HB2 H N N 25 HYP HB3 H N N 26 HYP HG H N N 27 HYP HD22 H N N 28 HYP HD23 H N N 29 HYP HD1 H N N 30 HYP HXT H N N 31 PRO N N N N 32 PRO CA C N S 33 PRO C C N N 34 PRO O O N N 35 PRO CB C N N 36 PRO CG C N N 37 PRO CD C N N 38 PRO OXT O N N 39 PRO H H N N 40 PRO HA H N N 41 PRO HB2 H N N 42 PRO HB3 H N N 43 PRO HG2 H N N 44 PRO HG3 H N N 45 PRO HD2 H N N 46 PRO HD3 H N N 47 PRO HXT H N N 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY N CA sing N N 1 GLY N H sing N N 2 GLY N H2 sing N N 3 GLY CA C sing N N 4 GLY CA HA2 sing N N 5 GLY CA HA3 sing N N 6 GLY C O doub N N 7 GLY C OXT sing N N 8 GLY OXT HXT sing N N 9 HOH O H1 sing N N 10 HOH O H2 sing N N 11 HYP N CA sing N N 12 HYP N CD sing N N 13 HYP N H sing N N 14 HYP CA C sing N N 15 HYP CA CB sing N N 16 HYP CA HA sing N N 17 HYP C O doub N N 18 HYP C OXT sing N N 19 HYP CB CG sing N N 20 HYP CB HB2 sing N N 21 HYP CB HB3 sing N N 22 HYP CG CD sing N N 23 HYP CG OD1 sing N N 24 HYP CG HG sing N N 25 HYP CD HD22 sing N N 26 HYP CD HD23 sing N N 27 HYP OD1 HD1 sing N N 28 HYP OXT HXT sing N N 29 PRO N CA sing N N 30 PRO N CD sing N N 31 PRO N H sing N N 32 PRO CA C sing N N 33 PRO CA CB sing N N 34 PRO CA HA sing N N 35 PRO C O doub N N 36 PRO C OXT sing N N 37 PRO CB CG sing N N 38 PRO CB HB2 sing N N 39 PRO CB HB3 sing N N 40 PRO CG CD sing N N 41 PRO CG HG2 sing N N 42 PRO CG HG3 sing N N 43 PRO CD HD2 sing N N 44 PRO CD HD3 sing N N 45 PRO OXT HXT sing N N 46 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2CUO _pdbx_initial_refinement_model.details ? #