data_3A10 # _entry.id 3A10 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3A10 pdb_00003a10 10.2210/pdb3a10/pdb RCSB RCSB028675 ? ? WWPDB D_1000028675 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3A0U _pdbx_database_related.details 'Response regulator protein TrrA (wild type)' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3A10 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-03-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yamada, S.' 1 'Sugimoto, H.' 2 'Kobayashi, M.' 3 'Ohno, A.' 4 'Nakamura, H.' 5 'Shiro, Y.' 6 # _citation.id primary _citation.title 'Structure of PAS-linked histidine kinase and the response regulator complex' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 1333 _citation.page_last 1344 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19836334 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.07.016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamada, S.' 1 ? primary 'Sugimoto, H.' 2 ? primary 'Kobayashi, M.' 3 ? primary 'Ohno, A.' 4 ? primary 'Nakamura, H.' 5 ? primary 'Shiro, Y.' 6 ? # _cell.length_a 32.678 _cell.length_b 32.678 _cell.length_c 199.242 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3A10 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 3A10 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Response regulator' 13520.953 1 ? L89MSE ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'BERYLLIUM TRIFLUORIDE ION' 66.007 1 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 2 ? ? ? ? 5 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE(MSE)PGISGLEVAGEIRKKKK DAKIILLTAYSHYRSD(MSE)SSWAADEYVVKSFNFDELKEKVKKLLS ; _entity_poly.pdbx_seq_one_letter_code_can ;MKRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLT AYSHYRSDMSSWAADEYVVKSFNFDELKEKVKKLLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LYS n 1 3 ARG n 1 4 ILE n 1 5 LEU n 1 6 VAL n 1 7 VAL n 1 8 ASP n 1 9 ASP n 1 10 GLU n 1 11 PRO n 1 12 ASN n 1 13 ILE n 1 14 ARG n 1 15 GLU n 1 16 LEU n 1 17 LEU n 1 18 LYS n 1 19 GLU n 1 20 GLU n 1 21 LEU n 1 22 GLN n 1 23 GLU n 1 24 GLU n 1 25 GLY n 1 26 TYR n 1 27 GLU n 1 28 ILE n 1 29 ASP n 1 30 THR n 1 31 ALA n 1 32 GLU n 1 33 ASN n 1 34 GLY n 1 35 GLU n 1 36 GLU n 1 37 ALA n 1 38 LEU n 1 39 LYS n 1 40 LYS n 1 41 PHE n 1 42 PHE n 1 43 SER n 1 44 GLY n 1 45 ASN n 1 46 TYR n 1 47 ASP n 1 48 LEU n 1 49 VAL n 1 50 ILE n 1 51 LEU n 1 52 ASP n 1 53 ILE n 1 54 GLU n 1 55 MSE n 1 56 PRO n 1 57 GLY n 1 58 ILE n 1 59 SER n 1 60 GLY n 1 61 LEU n 1 62 GLU n 1 63 VAL n 1 64 ALA n 1 65 GLY n 1 66 GLU n 1 67 ILE n 1 68 ARG n 1 69 LYS n 1 70 LYS n 1 71 LYS n 1 72 LYS n 1 73 ASP n 1 74 ALA n 1 75 LYS n 1 76 ILE n 1 77 ILE n 1 78 LEU n 1 79 LEU n 1 80 THR n 1 81 ALA n 1 82 TYR n 1 83 SER n 1 84 HIS n 1 85 TYR n 1 86 ARG n 1 87 SER n 1 88 ASP n 1 89 MSE n 1 90 SER n 1 91 SER n 1 92 TRP n 1 93 ALA n 1 94 ALA n 1 95 ASP n 1 96 GLU n 1 97 TYR n 1 98 VAL n 1 99 VAL n 1 100 LYS n 1 101 SER n 1 102 PHE n 1 103 ASN n 1 104 PHE n 1 105 ASP n 1 106 GLU n 1 107 LEU n 1 108 LYS n 1 109 GLU n 1 110 LYS n 1 111 VAL n 1 112 LYS n 1 113 LYS n 1 114 LEU n 1 115 LEU n 1 116 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM_1360 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) CodonPlus RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRSETA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9X181_THEMA _struct_ref.pdbx_db_accession Q9X181 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLT AYSHYRSDLSSWAADEYVVKSFNFDELKEKVKKLLS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3A10 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X181 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 116 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 116 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3A10 _struct_ref_seq_dif.mon_id MSE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 89 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9X181 _struct_ref_seq_dif.db_mon_id LEU _struct_ref_seq_dif.pdbx_seq_db_seq_num 89 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 89 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEF non-polymer . 'BERYLLIUM TRIFLUORIDE ION' ? 'Be F3 -1' 66.007 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3A10 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 37.47 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '50% PEG200, 0.1M sodium/potassium-phosphate, 0.1M sodium chloride, pH 6.2, VAPOR DIFFUSION, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-03-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'DIAMOND 111 DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9797 1.0 3 0.9787 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL45XU' _diffrn_source.pdbx_wavelength_list 0.9795,0.9797,0.9787 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL45XU # _reflns.entry_id 3A10 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 1.63 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 14298 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.037 _reflns.pdbx_netI_over_sigmaI 43.7 _reflns.B_iso_Wilson_estimate 18.8 _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.63 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 8.9 _reflns_shell.pdbx_Rsym_value 0.143 _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3A10 _refine.ls_d_res_high 1.630 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.690 _refine.ls_number_reflns_obs 14289 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_obs 0.203 _refine.ls_R_factor_R_work 0.200 _refine.ls_R_factor_R_free 0.250 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 719 _refine.B_iso_mean 19.765 _refine.aniso_B[1][1] -0.170 _refine.aniso_B[2][2] -0.170 _refine.aniso_B[3][3] 0.350 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.pdbx_overall_ESU_R 0.116 _refine.pdbx_overall_ESU_R_Free 0.119 _refine.overall_SU_ML 0.071 _refine.overall_SU_B 2.014 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 49.85 _refine.B_iso_min 8.65 _refine.occupancy_max 1.00 _refine.occupancy_min 0.20 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 968 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 1105 _refine_hist.d_res_high 1.630 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1010 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1344 1.446 2.018 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 121 5.998 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 46 37.869 25.870 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 207 12.655 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 23.483 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 146 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 716 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 461 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 692 0.306 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 89 0.137 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 2 0.097 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 72 0.250 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 17 0.144 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 618 1.002 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 957 1.390 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 443 2.423 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 385 3.719 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.631 _refine_ls_shell.d_res_low 1.673 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.000 _refine_ls_shell.number_reflns_R_work 929 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 989 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3A10 _struct.title 'Crystal structure of response regulator protein TrrA (TM1360) from Thermotoga maritima in complex with Mg(2+)-BeF (SeMet, L89M)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3A10 _struct_keywords.text 'phosphoacceptor, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 10 ? GLU A 24 ? GLU A 10 GLU A 24 1 ? 15 HELX_P HELX_P2 2 ASN A 33 ? GLY A 44 ? ASN A 33 GLY A 44 1 ? 12 HELX_P HELX_P3 3 SER A 59 ? LYS A 71 ? SER A 59 LYS A 71 1 ? 13 HELX_P HELX_P4 4 TYR A 82 ? ALA A 94 ? TYR A 82 ALA A 94 5 ? 13 HELX_P HELX_P5 5 PHE A 104 ? LEU A 115 ? PHE A 104 LEU A 115 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 1 C A ? ? 1_555 A LYS 2 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 1 C B ? ? 1_555 A LYS 2 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A MSE 1 C C ? ? 1_555 A LYS 2 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A GLU 54 C ? ? ? 1_555 A MSE 55 N ? ? A GLU 54 A MSE 55 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale5 covale both ? A MSE 55 C ? ? ? 1_555 A PRO 56 N ? ? A MSE 55 A PRO 56 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale6 covale both ? A ASP 88 C ? ? ? 1_555 A MSE 89 N ? ? A ASP 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A MSE 89 C ? ? ? 1_555 A SER 90 N ? ? A MSE 89 A SER 90 1_555 ? ? ? ? ? ? ? 1.332 ? ? metalc1 metalc ? ? A ASP 9 OD1 ? ? ? 1_555 B MG . MG ? ? A ASP 9 A MG 201 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc2 metalc ? ? A ASP 52 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 52 A MG 201 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc3 metalc ? ? A ASP 52 OD1 ? ? ? 1_555 C BEF . BE ? ? A ASP 52 A BEF 202 1_555 ? ? ? ? ? ? ? 1.556 ? ? metalc4 metalc ? ? A GLU 54 O ? ? ? 1_555 B MG . MG ? ? A GLU 54 A MG 201 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc5 metalc ? ? F HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 117 A MG 201 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc6 metalc ? ? F HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 126 A MG 201 1_555 ? ? ? ? ? ? ? 2.131 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 27 ? ALA A 31 ? GLU A 27 ALA A 31 A 2 ARG A 3 ? VAL A 7 ? ARG A 3 VAL A 7 A 3 LEU A 48 ? LEU A 51 ? LEU A 48 LEU A 51 A 4 ILE A 76 ? THR A 80 ? ILE A 76 THR A 80 A 5 GLU A 96 ? VAL A 99 ? GLU A 96 VAL A 99 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 29 ? O ASP A 29 N VAL A 6 ? N VAL A 6 A 2 3 N LEU A 5 ? N LEU A 5 O ILE A 50 ? O ILE A 50 A 3 4 N LEU A 51 ? N LEU A 51 O ILE A 77 ? O ILE A 77 A 4 5 N LEU A 78 ? N LEU A 78 O VAL A 98 ? O VAL A 98 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 6 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software A BEF 202 ? 10 'BINDING SITE FOR RESIDUE BEF A 202' AC3 Software A PG4 203 ? 9 'BINDING SITE FOR RESIDUE PG4 A 203' AC4 Software A PG4 204 ? 3 'BINDING SITE FOR RESIDUE PG4 A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 9 ? ASP A 9 . ? 1_555 ? 2 AC1 6 ASP A 52 ? ASP A 52 . ? 1_555 ? 3 AC1 6 GLU A 54 ? GLU A 54 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 117 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 126 . ? 1_555 ? 6 AC1 6 BEF C . ? BEF A 202 . ? 1_555 ? 7 AC2 10 ASP A 52 ? ASP A 52 . ? 1_555 ? 8 AC2 10 ILE A 53 ? ILE A 53 . ? 1_555 ? 9 AC2 10 GLU A 54 ? GLU A 54 . ? 1_555 ? 10 AC2 10 THR A 80 ? THR A 80 . ? 1_555 ? 11 AC2 10 ALA A 81 ? ALA A 81 . ? 1_555 ? 12 AC2 10 LYS A 100 ? LYS A 100 . ? 1_555 ? 13 AC2 10 HOH F . ? HOH A 117 . ? 1_555 ? 14 AC2 10 HOH F . ? HOH A 126 . ? 1_555 ? 15 AC2 10 HOH F . ? HOH A 130 . ? 1_555 ? 16 AC2 10 MG B . ? MG A 201 . ? 1_555 ? 17 AC3 9 ASP A 9 ? ASP A 9 . ? 1_555 ? 18 AC3 9 GLU A 54 ? GLU A 54 . ? 1_555 ? 19 AC3 9 MSE A 55 ? MSE A 55 . ? 1_555 ? 20 AC3 9 GLY A 57 ? GLY A 57 . ? 1_555 ? 21 AC3 9 SER A 59 ? SER A 59 . ? 1_555 ? 22 AC3 9 LYS A 69 ? LYS A 69 . ? 6_555 ? 23 AC3 9 HOH F . ? HOH A 165 . ? 1_555 ? 24 AC3 9 HOH F . ? HOH A 166 . ? 1_555 ? 25 AC3 9 HOH F . ? HOH A 186 . ? 1_555 ? 26 AC4 3 PHE A 42 ? PHE A 42 . ? 6_555 ? 27 AC4 3 MSE A 89 ? MSE A 89 . ? 1_555 ? 28 AC4 3 HOH F . ? HOH A 167 . ? 1_555 ? # _atom_sites.entry_id 3A10 _atom_sites.fract_transf_matrix[1][1] 0.030602 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005019 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BE C F MG N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 MSE 55 55 55 MSE MSE A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 MSE 89 89 89 MSE MSE A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 TRP 92 92 92 TRP TRP A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 SER 116 116 116 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 201 MG MG A . C 3 BEF 1 202 202 BEF BEF A . D 4 PG4 1 203 203 PG4 PG4 A . E 4 PG4 1 204 204 PG4 PG4 A . F 5 HOH 1 117 1 HOH HOH A . F 5 HOH 2 118 2 HOH HOH A . F 5 HOH 3 119 3 HOH HOH A . F 5 HOH 4 120 4 HOH HOH A . F 5 HOH 5 121 5 HOH HOH A . F 5 HOH 6 122 6 HOH HOH A . F 5 HOH 7 123 7 HOH HOH A . F 5 HOH 8 124 8 HOH HOH A . F 5 HOH 9 125 9 HOH HOH A . F 5 HOH 10 126 10 HOH HOH A . F 5 HOH 11 127 11 HOH HOH A . F 5 HOH 12 128 12 HOH HOH A . F 5 HOH 13 129 13 HOH HOH A . F 5 HOH 14 130 14 HOH HOH A . F 5 HOH 15 131 15 HOH HOH A . F 5 HOH 16 132 16 HOH HOH A . F 5 HOH 17 133 17 HOH HOH A . F 5 HOH 18 134 18 HOH HOH A . F 5 HOH 19 135 19 HOH HOH A . F 5 HOH 20 136 20 HOH HOH A . F 5 HOH 21 137 21 HOH HOH A . F 5 HOH 22 138 22 HOH HOH A . F 5 HOH 23 139 23 HOH HOH A . F 5 HOH 24 140 24 HOH HOH A . F 5 HOH 25 141 25 HOH HOH A . F 5 HOH 26 142 26 HOH HOH A . F 5 HOH 27 143 27 HOH HOH A . F 5 HOH 28 144 28 HOH HOH A . F 5 HOH 29 145 29 HOH HOH A . F 5 HOH 30 146 30 HOH HOH A . F 5 HOH 31 147 31 HOH HOH A . F 5 HOH 32 148 32 HOH HOH A . F 5 HOH 33 149 33 HOH HOH A . F 5 HOH 34 150 34 HOH HOH A . F 5 HOH 35 151 35 HOH HOH A . F 5 HOH 36 152 36 HOH HOH A . F 5 HOH 37 153 37 HOH HOH A . F 5 HOH 38 154 38 HOH HOH A . F 5 HOH 39 155 39 HOH HOH A . F 5 HOH 40 156 41 HOH HOH A . F 5 HOH 41 157 42 HOH HOH A . F 5 HOH 42 158 43 HOH HOH A . F 5 HOH 43 159 44 HOH HOH A . F 5 HOH 44 160 45 HOH HOH A . F 5 HOH 45 161 46 HOH HOH A . F 5 HOH 46 162 47 HOH HOH A . F 5 HOH 47 163 48 HOH HOH A . F 5 HOH 48 164 49 HOH HOH A . F 5 HOH 49 165 50 HOH HOH A . F 5 HOH 50 166 51 HOH HOH A . F 5 HOH 51 167 52 HOH HOH A . F 5 HOH 52 168 53 HOH HOH A . F 5 HOH 53 169 54 HOH HOH A . F 5 HOH 54 170 55 HOH HOH A . F 5 HOH 55 171 56 HOH HOH A . F 5 HOH 56 172 57 HOH HOH A . F 5 HOH 57 173 58 HOH HOH A . F 5 HOH 58 174 59 HOH HOH A . F 5 HOH 59 175 60 HOH HOH A . F 5 HOH 60 176 61 HOH HOH A . F 5 HOH 61 177 62 HOH HOH A . F 5 HOH 62 178 63 HOH HOH A . F 5 HOH 63 179 64 HOH HOH A . F 5 HOH 64 180 65 HOH HOH A . F 5 HOH 65 181 66 HOH HOH A . F 5 HOH 66 182 67 HOH HOH A . F 5 HOH 67 183 68 HOH HOH A . F 5 HOH 68 184 69 HOH HOH A . F 5 HOH 69 185 70 HOH HOH A . F 5 HOH 70 186 71 HOH HOH A . F 5 HOH 71 187 72 HOH HOH A . F 5 HOH 72 188 73 HOH HOH A . F 5 HOH 73 189 74 HOH HOH A . F 5 HOH 74 190 75 HOH HOH A . F 5 HOH 75 191 77 HOH HOH A . F 5 HOH 76 192 78 HOH HOH A . F 5 HOH 77 193 79 HOH HOH A . F 5 HOH 78 194 80 HOH HOH A . F 5 HOH 79 195 82 HOH HOH A . F 5 HOH 80 196 83 HOH HOH A . F 5 HOH 81 197 84 HOH HOH A . F 5 HOH 82 198 85 HOH HOH A . F 5 HOH 83 199 86 HOH HOH A . F 5 HOH 84 200 87 HOH HOH A . F 5 HOH 85 205 88 HOH HOH A . F 5 HOH 86 206 89 HOH HOH A . F 5 HOH 87 207 90 HOH HOH A . F 5 HOH 88 208 91 HOH HOH A . F 5 HOH 89 209 92 HOH HOH A . F 5 HOH 90 210 93 HOH HOH A . F 5 HOH 91 211 94 HOH HOH A . F 5 HOH 92 212 95 HOH HOH A . F 5 HOH 93 213 96 HOH HOH A . F 5 HOH 94 214 97 HOH HOH A . F 5 HOH 95 215 98 HOH HOH A . F 5 HOH 96 216 100 HOH HOH A . F 5 HOH 97 217 101 HOH HOH A . F 5 HOH 98 218 102 HOH HOH A . F 5 HOH 99 219 103 HOH HOH A . F 5 HOH 100 220 104 HOH HOH A . F 5 HOH 101 221 105 HOH HOH A . F 5 HOH 102 222 107 HOH HOH A . F 5 HOH 103 223 108 HOH HOH A . F 5 HOH 104 224 109 HOH HOH A . F 5 HOH 105 225 110 HOH HOH A . F 5 HOH 106 226 111 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 55 A MSE 55 ? MET SELENOMETHIONINE 3 A MSE 89 A MSE 89 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 9 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OD2 ? A ASP 52 ? A ASP 52 ? 1_555 85.8 ? 2 OD1 ? A ASP 9 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? A GLU 54 ? A GLU 54 ? 1_555 88.9 ? 3 OD2 ? A ASP 52 ? A ASP 52 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? A GLU 54 ? A GLU 54 ? 1_555 91.9 ? 4 OD1 ? A ASP 9 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 117 ? 1_555 88.6 ? 5 OD2 ? A ASP 52 ? A ASP 52 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 117 ? 1_555 85.4 ? 6 O ? A GLU 54 ? A GLU 54 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 117 ? 1_555 176.5 ? 7 OD1 ? A ASP 9 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 126 ? 1_555 90.3 ? 8 OD2 ? A ASP 52 ? A ASP 52 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 126 ? 1_555 175.5 ? 9 O ? A GLU 54 ? A GLU 54 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 126 ? 1_555 90.2 ? 10 O ? F HOH . ? A HOH 117 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 126 ? 1_555 92.3 ? 11 OD1 ? A ASP 52 ? A ASP 52 ? 1_555 BE ? C BEF . ? A BEF 202 ? 1_555 F1 ? C BEF . ? A BEF 202 ? 1_555 109.8 ? 12 OD1 ? A ASP 52 ? A ASP 52 ? 1_555 BE ? C BEF . ? A BEF 202 ? 1_555 F2 ? C BEF . ? A BEF 202 ? 1_555 112.4 ? 13 F1 ? C BEF . ? A BEF 202 ? 1_555 BE ? C BEF . ? A BEF 202 ? 1_555 F2 ? C BEF . ? A BEF 202 ? 1_555 107.1 ? 14 OD1 ? A ASP 52 ? A ASP 52 ? 1_555 BE ? C BEF . ? A BEF 202 ? 1_555 F3 ? C BEF . ? A BEF 202 ? 1_555 114.0 ? 15 F1 ? C BEF . ? A BEF 202 ? 1_555 BE ? C BEF . ? A BEF 202 ? 1_555 F3 ? C BEF . ? A BEF 202 ? 1_555 107.8 ? 16 F2 ? C BEF . ? A BEF 202 ? 1_555 BE ? C BEF . ? A BEF 202 ? 1_555 F3 ? C BEF . ? A BEF 202 ? 1_555 105.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_conn_angle 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.value' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 3 'Structure model' '_struct_ref_seq_dif.details' 19 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 3 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 4 SOLVE . ? ? ? ? phasing ? ? ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 45 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -143.22 _pdbx_validate_torsion.psi 54.66 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'BERYLLIUM TRIFLUORIDE ION' BEF 4 'TETRAETHYLENE GLYCOL' PG4 5 water HOH #