HEADER LIGASE 01-OCT-09 3A7R TITLE CRYSTAL STRUCTURE OF E. COLI LIPOATE-PROTEIN LIGASE A IN COMPLEX WITH TITLE 2 LIPOYL-AMP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOATE-PROTEIN LIGASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIPOATE-PROTEIN LIGASE; COMPND 5 EC: 6.3.4.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LPLA, YJJF, B4386, JW4349; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS ADENYLATE-FORMING ENZYME, LIPOIC ACID, ATP-BINDING, CYTOPLASM, KEYWDS 2 NUCLEOTIDE-BINDING, TRANSFERASE, LIPOYL, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FUJIWARA,H.HOSAKA REVDAT 3 01-NOV-23 3A7R 1 REMARK LINK REVDAT 2 07-APR-10 3A7R 1 JRNL REVDAT 1 19-JAN-10 3A7R 0 JRNL AUTH K.FUJIWARA,N.MAITA,H.HOSAKA,K.OKAMURA-IKEDA,A.NAKAGAWA, JRNL AUTH 2 H.TANIGUCHI JRNL TITL GLOBAL CONFORMATIONAL CHANGE ASSOCIATED WITH THE TWO-STEP JRNL TITL 2 REACTION CATALYZED BY ESCHERICHIA COLI LIPOATE-PROTEIN JRNL TITL 3 LIGASE A. JRNL REF J.BIOL.CHEM. V. 285 9971 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20089862 JRNL DOI 10.1074/JBC.M109.078717 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2204 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2972 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 506 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.442 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2773 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3764 ; 1.119 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 7.263 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;39.592 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;13.297 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2117 ; 0.019 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 1.847 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2688 ; 2.952 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1097 ; 4.667 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1076 ; 6.877 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.40 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2E5A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M LI2SO4, 0.01M MGSO4, 0.05M REMARK 280 CACODYLATE, PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.75067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.50133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.62600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 184.37667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.87533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.75067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 147.50133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 184.37667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.62600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.87533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 9 O HOH A 842 1.98 REMARK 500 OD1 ASN A 106 O HOH A 838 1.99 REMARK 500 O HOH A 840 O HOH A 892 2.00 REMARK 500 O HOH A 957 O HOH A 1024 2.03 REMARK 500 O HOH A 729 O HOH A 1109 2.03 REMARK 500 O HOH A 710 O HOH A 892 2.12 REMARK 500 O HOH A 842 O HOH A 918 2.14 REMARK 500 O HOH A 859 O HOH A 987 2.16 REMARK 500 O HOH A 919 O HOH A 1100 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1008 O HOH A 1008 12545 1.71 REMARK 500 O HOH A 771 O HOH A 993 12545 1.75 REMARK 500 O HOH A 756 O HOH A 993 12545 2.07 REMARK 500 O HOH A 812 O HOH A 1008 12545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 90.43 9.76 REMARK 500 THR A 142 -168.36 -117.31 REMARK 500 ASN A 155 41.72 -149.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 70 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 180 O REMARK 620 2 SER A 182 OG 114.8 REMARK 620 3 HOH A 935 O 110.1 87.1 REMARK 620 N 1 2 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAQ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X2G RELATED DB: PDB REMARK 900 LPLA IN ITS UNLIGANDED FORM REMARK 900 RELATED ID: 1X2H RELATED DB: PDB REMARK 900 LPLA IN COMPLEX WITH LIPOIC ACID REMARK 900 RELATED ID: 2E5A RELATED DB: PDB REMARK 900 BOVINE LIPOYLTRANSFERASE REMARK 900 RELATED ID: 3A7A RELATED DB: PDB DBREF 3A7R A 1 337 UNP P32099 LPLA_ECOLI 2 338 SEQRES 1 A 337 SER THR LEU ARG LEU LEU ILE SER ASP SER TYR ASP PRO SEQRES 2 A 337 TRP PHE ASN LEU ALA VAL GLU GLU CYS ILE PHE ARG GLN SEQRES 3 A 337 MET PRO ALA THR GLN ARG VAL LEU PHE LEU TRP ARG ASN SEQRES 4 A 337 ALA ASP THR VAL VAL ILE GLY ARG ALA GLN ASN PRO TRP SEQRES 5 A 337 LYS GLU CYS ASN THR ARG ARG MET GLU GLU ASP ASN VAL SEQRES 6 A 337 ARG LEU ALA ARG ARG SER SER GLY GLY GLY ALA VAL PHE SEQRES 7 A 337 HIS ASP LEU GLY ASN THR CYS PHE THR PHE MET ALA GLY SEQRES 8 A 337 LYS PRO GLU TYR ASP LYS THR ILE SER THR SER ILE VAL SEQRES 9 A 337 LEU ASN ALA LEU ASN ALA LEU GLY VAL SER ALA GLU ALA SEQRES 10 A 337 SER GLY ARG ASN ASP LEU VAL VAL LYS THR VAL GLU GLY SEQRES 11 A 337 ASP ARG LYS VAL SER GLY SER ALA TYR ARG GLU THR LYS SEQRES 12 A 337 ASP ARG GLY PHE HIS HIS GLY THR LEU LEU LEU ASN ALA SEQRES 13 A 337 ASP LEU SER ARG LEU ALA ASN TYR LEU ASN PRO ASP LYS SEQRES 14 A 337 LYS LYS LEU ALA ALA LYS GLY ILE THR SER VAL ARG SER SEQRES 15 A 337 ARG VAL THR ASN LEU THR GLU LEU LEU PRO GLY ILE THR SEQRES 16 A 337 HIS GLU GLN VAL CYS GLU ALA ILE THR GLU ALA PHE PHE SEQRES 17 A 337 ALA HIS TYR GLY GLU ARG VAL GLU ALA GLU ILE ILE SER SEQRES 18 A 337 PRO ASN LYS THR PRO ASP LEU PRO ASN PHE ALA GLU THR SEQRES 19 A 337 PHE ALA ARG GLN SER SER TRP GLU TRP ASN PHE GLY GLN SEQRES 20 A 337 ALA PRO ALA PHE SER HIS LEU LEU ASP GLU ARG PHE THR SEQRES 21 A 337 TRP GLY GLY VAL GLU LEU HIS PHE ASP VAL GLU LYS GLY SEQRES 22 A 337 HIS ILE THR ARG ALA GLN VAL PHE THR ASP SER LEU ASN SEQRES 23 A 337 PRO ALA PRO LEU GLU ALA LEU ALA GLY ARG LEU GLN GLY SEQRES 24 A 337 CYS LEU TYR ARG ALA ASP MET LEU GLN GLN GLU CYS GLU SEQRES 25 A 337 ALA LEU LEU VAL ASP PHE PRO GLU GLN GLU LYS GLU LEU SEQRES 26 A 337 ARG GLU LEU SER ALA TRP MET ALA GLY ALA VAL ARG HET LAQ A 401 34 HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET MG A1201 1 HETNAM LAQ 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY) HETNAM 2 LAQ (HYDROXY)PHOSPHORYL]ADENOSINE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETSYN LAQ LIPOYL-AMP FORMUL 2 LAQ C18 H26 N5 O8 P S2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 MG MG 2+ FORMUL 8 HOH *506(H2 O) HELIX 1 1 ASP A 12 MET A 27 1 16 HELIX 2 2 ASN A 50 CYS A 55 1 6 HELIX 3 3 THR A 57 ASP A 63 1 7 HELIX 4 4 ASP A 96 LEU A 111 1 16 HELIX 5 5 ASP A 157 LEU A 165 1 9 HELIX 6 6 ASN A 186 LEU A 190 5 5 HELIX 7 7 THR A 195 GLY A 212 1 18 HELIX 8 8 ASN A 230 SER A 239 1 10 HELIX 9 9 TRP A 241 PHE A 245 1 5 HELIX 10 10 PRO A 287 LEU A 297 1 11 HELIX 11 11 ARG A 303 LEU A 314 1 12 HELIX 12 12 PHE A 318 GLU A 320 5 3 HELIX 13 13 GLN A 321 ARG A 337 1 17 SHEET 1 A 8 GLU A 116 SER A 118 0 SHEET 2 A 8 ASP A 122 VAL A 125 -1 O VAL A 124 N GLU A 116 SHEET 3 A 8 ARG A 132 GLU A 141 -1 O ARG A 132 N VAL A 125 SHEET 4 A 8 ARG A 145 LEU A 153 -1 O PHE A 147 N ARG A 140 SHEET 5 A 8 ASN A 83 GLY A 91 -1 N PHE A 88 O HIS A 148 SHEET 6 A 8 ARG A 32 TRP A 37 -1 N TRP A 37 O CYS A 85 SHEET 7 A 8 LEU A 3 SER A 8 1 N LEU A 6 O LEU A 34 SHEET 8 A 8 GLU A 218 ILE A 220 1 O ILE A 220 N ILE A 7 SHEET 1 B 3 ARG A 66 ARG A 69 0 SHEET 2 B 3 THR A 42 ILE A 45 1 N VAL A 43 O ARG A 66 SHEET 3 B 3 VAL A 77 HIS A 79 -1 O HIS A 79 N THR A 42 SHEET 1 C 4 LYS A 171 ALA A 174 0 SHEET 2 C 4 PHE A 251 PHE A 259 -1 O LEU A 254 N LYS A 171 SHEET 3 C 4 GLY A 262 GLU A 271 -1 O VAL A 270 N PHE A 251 SHEET 4 C 4 HIS A 274 THR A 282 -1 O PHE A 281 N GLU A 265 LINK O VAL A 180 MG MG A1201 1555 1555 2.65 LINK OG SER A 182 MG MG A1201 1555 1555 2.36 LINK O HOH A 935 MG MG A1201 1555 1555 2.54 CISPEP 1 LYS A 92 PRO A 93 0 15.35 SITE 1 AC1 27 TRP A 37 ARG A 70 GLY A 75 ALA A 76 SITE 2 AC1 27 VAL A 77 PHE A 78 HIS A 79 ASN A 83 SITE 3 AC1 27 ASN A 121 LYS A 133 GLY A 136 THR A 151 SITE 4 AC1 27 LEU A 153 LEU A 161 LEU A 165 SER A 179 SITE 5 AC1 27 VAL A 180 ARG A 181 SER A 182 VAL A 184 SITE 6 AC1 27 HOH A 601 HOH A 663 HOH A 751 HOH A 777 SITE 7 AC1 27 HOH A1036 HOH A1092 MG A1201 SITE 1 AC2 3 ARG A 58 ARG A 59 HOH A 960 SITE 1 AC3 8 ASP A 305 ARG A 337 HOH A 634 HOH A 780 SITE 2 AC3 8 HOH A 857 HOH A 908 HOH A 924 HOH A1052 SITE 1 AC4 3 ARG A 277 HOH A 818 HOH A 957 SITE 1 AC5 5 HIS A 267 GLN A 279 HOH A 927 HOH A 977 SITE 2 AC5 5 HOH A1021 SITE 1 AC6 5 LYS A 133 VAL A 180 SER A 182 LAQ A 401 SITE 2 AC6 5 HOH A 935 CRYST1 102.298 102.298 221.252 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009775 0.005644 0.000000 0.00000 SCALE2 0.000000 0.011288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004520 0.00000