data_3AAK # _entry.id 3AAK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3AAK RCSB RCSB029017 WWPDB D_1000029017 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HQV 'APOPTOSIS-LINKED PROTEIN ALG-2' unspecified PDB 2ZNE 'Crystal structure of ZN+-bound form of des3-23ALG-2 complexed with alix ABS peptide' unspecified PDB 2ZND 'Crystal structure of Ca2+-free form of des3-20ALG-2' unspecified PDB 2ZN9 'Crystal structure of Ca2+-bound form of des3-20ALG-2' unspecified PDB 2ZN8 'Crystal structure of Zn2+-bound form of ALG-2' unspecified PDB 2ZRT 'Crystal structure of ZN2+-bound form of des3-23ALG-2' unspecified PDB 2ZRS 'Crystal structure of CA2+-bound form of des3-23ALG-2' unspecified PDB 3AAJ 'Crystal structure of Ca2+-bound form of des3-23ALG-2deltaGF122' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3AAK _pdbx_database_status.recvd_initial_deposition_date 2009-11-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Inuzuka, T.' 1 'Suzuki, H.' 2 'Kawasaki, M.' 3 'Shibata, H.' 4 'Wakatsuki, S.' 5 'Maki, M.' 6 # _citation.id primary _citation.title ;Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition ; _citation.journal_abbrev 'Bmc Struct.Biol.' _citation.journal_volume 10 _citation.page_first 25 _citation.page_last 25 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1472-6807 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20691033 _citation.pdbx_database_id_DOI 10.1186/1472-6807-10-25 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Inuzuka, T.' 1 primary 'Suzuki, H.' 2 primary 'Kawasaki, M.' 3 primary 'Shibata, H.' 4 primary 'Wakatsuki, S.' 5 primary 'Maki, M.' 6 # _cell.entry_id 3AAK _cell.length_a 71.266 _cell.length_b 170.209 _cell.length_c 46.911 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3AAK _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Programmed cell death protein 6' 20082.396 1 ? 'deletions of residues 3-20, F122A' 'residues 2-191' ? 2 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 3 water nat water 18.015 16 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Calcium-binding protein ALG-2, Apoptosis-linked gene 2 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVF RTYDRDNSGMIDKNELKQALSGAGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS YEQYLSMVFSIV ; _entity_poly.pdbx_seq_one_letter_code_can ;AALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVF RTYDRDNSGMIDKNELKQALSGAGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS YEQYLSMVFSIV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 LEU n 1 4 PRO n 1 5 ASP n 1 6 GLN n 1 7 SER n 1 8 PHE n 1 9 LEU n 1 10 TRP n 1 11 ASN n 1 12 VAL n 1 13 PHE n 1 14 GLN n 1 15 ARG n 1 16 VAL n 1 17 ASP n 1 18 LYS n 1 19 ASP n 1 20 ARG n 1 21 SER n 1 22 GLY n 1 23 VAL n 1 24 ILE n 1 25 SER n 1 26 ASP n 1 27 THR n 1 28 GLU n 1 29 LEU n 1 30 GLN n 1 31 GLN n 1 32 ALA n 1 33 LEU n 1 34 SER n 1 35 ASN n 1 36 GLY n 1 37 THR n 1 38 TRP n 1 39 THR n 1 40 PRO n 1 41 PHE n 1 42 ASN n 1 43 PRO n 1 44 VAL n 1 45 THR n 1 46 VAL n 1 47 ARG n 1 48 SER n 1 49 ILE n 1 50 ILE n 1 51 SER n 1 52 MET n 1 53 PHE n 1 54 ASP n 1 55 ARG n 1 56 GLU n 1 57 ASN n 1 58 LYS n 1 59 ALA n 1 60 GLY n 1 61 VAL n 1 62 ASN n 1 63 PHE n 1 64 SER n 1 65 GLU n 1 66 PHE n 1 67 THR n 1 68 GLY n 1 69 VAL n 1 70 TRP n 1 71 LYS n 1 72 TYR n 1 73 ILE n 1 74 THR n 1 75 ASP n 1 76 TRP n 1 77 GLN n 1 78 ASN n 1 79 VAL n 1 80 PHE n 1 81 ARG n 1 82 THR n 1 83 TYR n 1 84 ASP n 1 85 ARG n 1 86 ASP n 1 87 ASN n 1 88 SER n 1 89 GLY n 1 90 MET n 1 91 ILE n 1 92 ASP n 1 93 LYS n 1 94 ASN n 1 95 GLU n 1 96 LEU n 1 97 LYS n 1 98 GLN n 1 99 ALA n 1 100 LEU n 1 101 SER n 1 102 GLY n 1 103 ALA n 1 104 GLY n 1 105 TYR n 1 106 ARG n 1 107 LEU n 1 108 SER n 1 109 ASP n 1 110 GLN n 1 111 PHE n 1 112 HIS n 1 113 ASP n 1 114 ILE n 1 115 LEU n 1 116 ILE n 1 117 ARG n 1 118 LYS n 1 119 PHE n 1 120 ASP n 1 121 ARG n 1 122 GLN n 1 123 GLY n 1 124 ARG n 1 125 GLY n 1 126 GLN n 1 127 ILE n 1 128 ALA n 1 129 PHE n 1 130 ASP n 1 131 ASP n 1 132 PHE n 1 133 ILE n 1 134 GLN n 1 135 GLY n 1 136 CYS n 1 137 ILE n 1 138 VAL n 1 139 LEU n 1 140 GLN n 1 141 ARG n 1 142 LEU n 1 143 THR n 1 144 ASP n 1 145 ILE n 1 146 PHE n 1 147 ARG n 1 148 ARG n 1 149 TYR n 1 150 ASP n 1 151 THR n 1 152 ASP n 1 153 GLN n 1 154 ASP n 1 155 GLY n 1 156 TRP n 1 157 ILE n 1 158 GLN n 1 159 VAL n 1 160 SER n 1 161 TYR n 1 162 GLU n 1 163 GLN n 1 164 TYR n 1 165 LEU n 1 166 SER n 1 167 MET n 1 168 VAL n 1 169 PHE n 1 170 SER n 1 171 ILE n 1 172 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3d _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDCD6_HUMAN _struct_ref.pdbx_db_accession O75340 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVN FSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRL TDIFRRYDTDQDGWIQVSYEQYLSMVFSIV ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3AAK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75340 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 191 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 191 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3AAK ? A ? ? UNP O75340 ALA 3 DELETION ? 1 1 3AAK ? A ? ? UNP O75340 TYR 4 DELETION ? 2 1 3AAK ? A ? ? UNP O75340 SER 5 DELETION ? 3 1 3AAK ? A ? ? UNP O75340 TYR 6 DELETION ? 4 1 3AAK ? A ? ? UNP O75340 ARG 7 DELETION ? 5 1 3AAK ? A ? ? UNP O75340 PRO 8 DELETION ? 6 1 3AAK ? A ? ? UNP O75340 GLY 9 DELETION ? 7 1 3AAK ? A ? ? UNP O75340 PRO 10 DELETION ? 8 1 3AAK ? A ? ? UNP O75340 GLY 11 DELETION ? 9 1 3AAK ? A ? ? UNP O75340 ALA 12 DELETION ? 10 1 3AAK ? A ? ? UNP O75340 GLY 13 DELETION ? 11 1 3AAK ? A ? ? UNP O75340 PRO 14 DELETION ? 12 1 3AAK ? A ? ? UNP O75340 GLY 15 DELETION ? 13 1 3AAK ? A ? ? UNP O75340 PRO 16 DELETION ? 14 1 3AAK ? A ? ? UNP O75340 ALA 17 DELETION ? 15 1 3AAK ? A ? ? UNP O75340 ALA 18 DELETION ? 16 1 3AAK ? A ? ? UNP O75340 GLY 19 DELETION ? 17 1 3AAK ? A ? ? UNP O75340 ALA 20 DELETION ? 18 1 3AAK ALA A 103 ? UNP O75340 PHE 122 'ENGINEERED MUTATION' 122 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3AAK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.54 _exptl_crystal.density_percent_sol 65.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '25% 2-methyl-2,4-pentanediol, 100mM Cacodylate, 50mM Zinc acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2008-11-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3AAK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.5 _reflns.number_obs 10302 _reflns.number_all ? _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 _reflns.pdbx_netI_over_sigmaI 28.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 88.4 _reflns_shell.Rmerge_I_obs 0.120 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 14.3 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3AAK _refine.ls_number_reflns_obs 7738 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.24 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 98.93 _refine.ls_R_factor_obs 0.25422 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.25206 _refine.ls_R_factor_R_free 0.29827 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 389 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.913 _refine.correlation_coeff_Fo_to_Fc_free 0.889 _refine.B_iso_mean 56.294 _refine.aniso_B[1][1] 10.75 _refine.aniso_B[2][2] -5.21 _refine.aniso_B[3][3] -5.53 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; CNS 1.21 was also used in refinement.' _refine.pdbx_starting_model 'PDB ENTRY 2ZN8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.565 _refine.pdbx_overall_ESU_R_Free 0.350 _refine.overall_SU_ML 0.285 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.212 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1385 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 1404 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 32.24 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.022 ? 1416 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.858 1.911 ? 1913 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.156 5.000 ? 166 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.994 23.780 ? 82 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.856 15.000 ? 241 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.541 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.067 0.200 ? 200 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 1108 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.180 0.200 ? 657 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 1002 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.138 0.200 ? 46 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.070 0.200 ? 4 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.156 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.209 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.313 1.500 ? 849 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.560 2.000 ? 1335 'X-RAY DIFFRACTION' ? r_scbond_it 0.490 3.000 ? 657 'X-RAY DIFFRACTION' ? r_scangle_it 0.845 4.500 ? 578 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.700 _refine_ls_shell.d_res_low 2.770 _refine_ls_shell.number_reflns_R_work 558 _refine_ls_shell.R_factor_R_work 0.326 _refine_ls_shell.percent_reflns_obs 96.71 _refine_ls_shell.R_factor_R_free 0.243 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3AAK _struct.title 'Crystal structure of Zn2+-bound form of des3-20ALG-2F122A' _struct.pdbx_descriptor 'Programmed cell death protein 6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AAK _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'PENTA-EF-HAND PROTEIN, CALCIUM-BINDING PROTEIN, Apoptosis, Endoplasmic reticulum' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 6 ? ASP A 17 ? GLN A 25 ASP A 36 1 ? 12 HELX_P HELX_P2 2 ASP A 26 ? ALA A 32 ? ASP A 45 ALA A 51 1 ? 7 HELX_P HELX_P3 3 ASN A 42 ? MET A 52 ? ASN A 61 MET A 71 1 ? 11 HELX_P HELX_P4 4 ASN A 62 ? TYR A 83 ? ASN A 81 TYR A 102 1 ? 22 HELX_P HELX_P5 5 LYS A 93 ? ALA A 103 ? LYS A 112 ALA A 122 1 ? 11 HELX_P HELX_P6 6 SER A 108 ? ASP A 120 ? SER A 127 ASP A 139 1 ? 13 HELX_P HELX_P7 7 ALA A 128 ? ASP A 150 ? ALA A 147 ASP A 169 1 ? 23 HELX_P HELX_P8 8 SER A 160 ? SER A 170 ? SER A 179 SER A 189 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A ASP 154 OD2 ? ? ? 1_555 D ZN . ZN ? ? A ASP 173 A ZN 993 1_555 ? ? ? ? ? ? ? 1.941 ? metalc2 metalc ? ? A ASP 152 OD2 ? ? ? 1_555 D ZN . ZN ? ? A ASP 171 A ZN 993 1_555 ? ? ? ? ? ? ? 1.944 ? metalc3 metalc ? ? A ASP 17 OD1 ? ? ? 1_555 B ZN . ZN ? ? A ASP 36 A ZN 991 1_555 ? ? ? ? ? ? ? 1.955 ? metalc4 metalc ? ? A ASP 84 OD1 ? ? ? 1_555 C ZN . ZN ? ? A ASP 103 A ZN 992 1_555 ? ? ? ? ? ? ? 1.964 ? metalc5 metalc ? ? A SER 88 OG ? ? ? 1_555 C ZN . ZN ? ? A SER 107 A ZN 992 1_555 ? ? ? ? ? ? ? 2.027 ? metalc6 metalc ? ? A ASP 86 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 105 A ZN 992 1_555 ? ? ? ? ? ? ? 2.123 ? metalc7 metalc ? ? A ASP 19 OD2 ? ? ? 1_555 B ZN . ZN ? ? A ASP 38 A ZN 991 1_555 ? ? ? ? ? ? ? 2.132 ? metalc8 metalc ? ? A VAL 23 O ? ? ? 1_555 B ZN . ZN ? ? A VAL 42 A ZN 991 1_555 ? ? ? ? ? ? ? 2.148 ? metalc9 metalc ? ? B ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 991 A HOH 14 1_555 ? ? ? ? ? ? ? 2.157 ? metalc10 metalc ? ? A GLU 95 OE1 ? ? ? 1_555 C ZN . ZN ? ? A GLU 114 A ZN 992 1_555 ? ? ? ? ? ? ? 2.490 ? metalc11 metalc ? ? C ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 992 A HOH 12 1_555 ? ? ? ? ? ? ? 2.495 ? metalc12 metalc ? ? A GLU 28 OE1 ? ? ? 1_555 B ZN . ZN ? ? A GLU 47 A ZN 991 1_555 ? ? ? ? ? ? ? 2.584 ? metalc13 metalc ? ? D ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 993 A HOH 16 1_555 ? ? ? ? ? ? ? 2.605 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 24 ? SER A 25 ? ILE A 43 SER A 44 A 2 GLY A 60 ? VAL A 61 ? GLY A 79 VAL A 80 B 1 ILE A 91 ? ASP A 92 ? ILE A 110 ASP A 111 B 2 GLN A 126 ? ILE A 127 ? GLN A 145 ILE A 146 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 24 ? N ILE A 43 O VAL A 61 ? O VAL A 80 B 1 2 N ILE A 91 ? N ILE A 110 O ILE A 127 ? O ILE A 146 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ZN A 991' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ZN A 992' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 993' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH A 14 . ? 1_555 ? 2 AC1 6 ASP A 17 ? ASP A 36 . ? 1_555 ? 3 AC1 6 ASP A 19 ? ASP A 38 . ? 1_555 ? 4 AC1 6 SER A 21 ? SER A 40 . ? 1_555 ? 5 AC1 6 VAL A 23 ? VAL A 42 . ? 1_555 ? 6 AC1 6 GLU A 28 ? GLU A 47 . ? 1_555 ? 7 AC2 6 HOH E . ? HOH A 12 . ? 1_555 ? 8 AC2 6 ASP A 84 ? ASP A 103 . ? 1_555 ? 9 AC2 6 ASP A 86 ? ASP A 105 . ? 1_555 ? 10 AC2 6 SER A 88 ? SER A 107 . ? 1_555 ? 11 AC2 6 MET A 90 ? MET A 109 . ? 1_555 ? 12 AC2 6 GLU A 95 ? GLU A 114 . ? 1_555 ? 13 AC3 5 HOH E . ? HOH A 15 . ? 1_555 ? 14 AC3 5 HOH E . ? HOH A 16 . ? 1_555 ? 15 AC3 5 ASP A 109 ? ASP A 128 . ? 4_555 ? 16 AC3 5 ASP A 152 ? ASP A 171 . ? 1_555 ? 17 AC3 5 ASP A 154 ? ASP A 173 . ? 1_555 ? # _database_PDB_matrix.entry_id 3AAK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3AAK _atom_sites.fract_transf_matrix[1][1] 0.014032 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005875 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021317 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 ? ? ? A . n A 1 2 ALA 2 21 ? ? ? A . n A 1 3 LEU 3 22 ? ? ? A . n A 1 4 PRO 4 23 ? ? ? A . n A 1 5 ASP 5 24 ? ? ? A . n A 1 6 GLN 6 25 25 GLN GLN A . n A 1 7 SER 7 26 26 SER SER A . n A 1 8 PHE 8 27 27 PHE PHE A . n A 1 9 LEU 9 28 28 LEU LEU A . n A 1 10 TRP 10 29 29 TRP TRP A . n A 1 11 ASN 11 30 30 ASN ASN A . n A 1 12 VAL 12 31 31 VAL VAL A . n A 1 13 PHE 13 32 32 PHE PHE A . n A 1 14 GLN 14 33 33 GLN GLN A . n A 1 15 ARG 15 34 34 ARG ARG A . n A 1 16 VAL 16 35 35 VAL VAL A . n A 1 17 ASP 17 36 36 ASP ASP A . n A 1 18 LYS 18 37 37 LYS LYS A . n A 1 19 ASP 19 38 38 ASP ASP A . n A 1 20 ARG 20 39 39 ARG ARG A . n A 1 21 SER 21 40 40 SER SER A . n A 1 22 GLY 22 41 41 GLY GLY A . n A 1 23 VAL 23 42 42 VAL VAL A . n A 1 24 ILE 24 43 43 ILE ILE A . n A 1 25 SER 25 44 44 SER SER A . n A 1 26 ASP 26 45 45 ASP ASP A . n A 1 27 THR 27 46 46 THR THR A . n A 1 28 GLU 28 47 47 GLU GLU A . n A 1 29 LEU 29 48 48 LEU LEU A . n A 1 30 GLN 30 49 49 GLN GLN A . n A 1 31 GLN 31 50 50 GLN GLN A . n A 1 32 ALA 32 51 51 ALA ALA A . n A 1 33 LEU 33 52 52 LEU LEU A . n A 1 34 SER 34 53 53 SER SER A . n A 1 35 ASN 35 54 54 ASN ASN A . n A 1 36 GLY 36 55 55 GLY GLY A . n A 1 37 THR 37 56 56 THR THR A . n A 1 38 TRP 38 57 57 TRP TRP A . n A 1 39 THR 39 58 58 THR THR A . n A 1 40 PRO 40 59 59 PRO PRO A . n A 1 41 PHE 41 60 60 PHE PHE A . n A 1 42 ASN 42 61 61 ASN ASN A . n A 1 43 PRO 43 62 62 PRO PRO A . n A 1 44 VAL 44 63 63 VAL VAL A . n A 1 45 THR 45 64 64 THR THR A . n A 1 46 VAL 46 65 65 VAL VAL A . n A 1 47 ARG 47 66 66 ARG ARG A . n A 1 48 SER 48 67 67 SER SER A . n A 1 49 ILE 49 68 68 ILE ILE A . n A 1 50 ILE 50 69 69 ILE ILE A . n A 1 51 SER 51 70 70 SER SER A . n A 1 52 MET 52 71 71 MET MET A . n A 1 53 PHE 53 72 72 PHE PHE A . n A 1 54 ASP 54 73 73 ASP ASP A . n A 1 55 ARG 55 74 74 ARG ARG A . n A 1 56 GLU 56 75 75 GLU GLU A . n A 1 57 ASN 57 76 76 ASN ASN A . n A 1 58 LYS 58 77 77 LYS LYS A . n A 1 59 ALA 59 78 78 ALA ALA A . n A 1 60 GLY 60 79 79 GLY GLY A . n A 1 61 VAL 61 80 80 VAL VAL A . n A 1 62 ASN 62 81 81 ASN ASN A . n A 1 63 PHE 63 82 82 PHE PHE A . n A 1 64 SER 64 83 83 SER SER A . n A 1 65 GLU 65 84 84 GLU GLU A . n A 1 66 PHE 66 85 85 PHE PHE A . n A 1 67 THR 67 86 86 THR THR A . n A 1 68 GLY 68 87 87 GLY GLY A . n A 1 69 VAL 69 88 88 VAL VAL A . n A 1 70 TRP 70 89 89 TRP TRP A . n A 1 71 LYS 71 90 90 LYS LYS A . n A 1 72 TYR 72 91 91 TYR TYR A . n A 1 73 ILE 73 92 92 ILE ILE A . n A 1 74 THR 74 93 93 THR THR A . n A 1 75 ASP 75 94 94 ASP ASP A . n A 1 76 TRP 76 95 95 TRP TRP A . n A 1 77 GLN 77 96 96 GLN GLN A . n A 1 78 ASN 78 97 97 ASN ASN A . n A 1 79 VAL 79 98 98 VAL VAL A . n A 1 80 PHE 80 99 99 PHE PHE A . n A 1 81 ARG 81 100 100 ARG ARG A . n A 1 82 THR 82 101 101 THR THR A . n A 1 83 TYR 83 102 102 TYR TYR A . n A 1 84 ASP 84 103 103 ASP ASP A . n A 1 85 ARG 85 104 104 ARG ARG A . n A 1 86 ASP 86 105 105 ASP ASP A . n A 1 87 ASN 87 106 106 ASN ASN A . n A 1 88 SER 88 107 107 SER SER A . n A 1 89 GLY 89 108 108 GLY GLY A . n A 1 90 MET 90 109 109 MET MET A . n A 1 91 ILE 91 110 110 ILE ILE A . n A 1 92 ASP 92 111 111 ASP ASP A . n A 1 93 LYS 93 112 112 LYS LYS A . n A 1 94 ASN 94 113 113 ASN ASN A . n A 1 95 GLU 95 114 114 GLU GLU A . n A 1 96 LEU 96 115 115 LEU LEU A . n A 1 97 LYS 97 116 116 LYS LYS A . n A 1 98 GLN 98 117 117 GLN GLN A . n A 1 99 ALA 99 118 118 ALA ALA A . n A 1 100 LEU 100 119 119 LEU LEU A . n A 1 101 SER 101 120 120 SER SER A . n A 1 102 GLY 102 121 121 GLY GLY A . n A 1 103 ALA 103 122 122 ALA ALA A . n A 1 104 GLY 104 123 123 GLY GLY A . n A 1 105 TYR 105 124 124 TYR TYR A . n A 1 106 ARG 106 125 125 ARG ARG A . n A 1 107 LEU 107 126 126 LEU LEU A . n A 1 108 SER 108 127 127 SER SER A . n A 1 109 ASP 109 128 128 ASP ASP A . n A 1 110 GLN 110 129 129 GLN GLN A . n A 1 111 PHE 111 130 130 PHE PHE A . n A 1 112 HIS 112 131 131 HIS HIS A . n A 1 113 ASP 113 132 132 ASP ASP A . n A 1 114 ILE 114 133 133 ILE ILE A . n A 1 115 LEU 115 134 134 LEU LEU A . n A 1 116 ILE 116 135 135 ILE ILE A . n A 1 117 ARG 117 136 136 ARG ARG A . n A 1 118 LYS 118 137 137 LYS LYS A . n A 1 119 PHE 119 138 138 PHE PHE A . n A 1 120 ASP 120 139 139 ASP ASP A . n A 1 121 ARG 121 140 140 ARG ARG A . n A 1 122 GLN 122 141 141 GLN GLN A . n A 1 123 GLY 123 142 142 GLY GLY A . n A 1 124 ARG 124 143 143 ARG ARG A . n A 1 125 GLY 125 144 144 GLY GLY A . n A 1 126 GLN 126 145 145 GLN GLN A . n A 1 127 ILE 127 146 146 ILE ILE A . n A 1 128 ALA 128 147 147 ALA ALA A . n A 1 129 PHE 129 148 148 PHE PHE A . n A 1 130 ASP 130 149 149 ASP ASP A . n A 1 131 ASP 131 150 150 ASP ASP A . n A 1 132 PHE 132 151 151 PHE PHE A . n A 1 133 ILE 133 152 152 ILE ILE A . n A 1 134 GLN 134 153 153 GLN GLN A . n A 1 135 GLY 135 154 154 GLY GLY A . n A 1 136 CYS 136 155 155 CYS CYS A . n A 1 137 ILE 137 156 156 ILE ILE A . n A 1 138 VAL 138 157 157 VAL VAL A . n A 1 139 LEU 139 158 158 LEU LEU A . n A 1 140 GLN 140 159 159 GLN GLN A . n A 1 141 ARG 141 160 160 ARG ARG A . n A 1 142 LEU 142 161 161 LEU LEU A . n A 1 143 THR 143 162 162 THR THR A . n A 1 144 ASP 144 163 163 ASP ASP A . n A 1 145 ILE 145 164 164 ILE ILE A . n A 1 146 PHE 146 165 165 PHE PHE A . n A 1 147 ARG 147 166 166 ARG ARG A . n A 1 148 ARG 148 167 167 ARG ARG A . n A 1 149 TYR 149 168 168 TYR TYR A . n A 1 150 ASP 150 169 169 ASP ASP A . n A 1 151 THR 151 170 170 THR THR A . n A 1 152 ASP 152 171 171 ASP ASP A . n A 1 153 GLN 153 172 172 GLN GLN A . n A 1 154 ASP 154 173 173 ASP ASP A . n A 1 155 GLY 155 174 174 GLY GLY A . n A 1 156 TRP 156 175 175 TRP TRP A . n A 1 157 ILE 157 176 176 ILE ILE A . n A 1 158 GLN 158 177 177 GLN GLN A . n A 1 159 VAL 159 178 178 VAL VAL A . n A 1 160 SER 160 179 179 SER SER A . n A 1 161 TYR 161 180 180 TYR TYR A . n A 1 162 GLU 162 181 181 GLU GLU A . n A 1 163 GLN 163 182 182 GLN GLN A . n A 1 164 TYR 164 183 183 TYR TYR A . n A 1 165 LEU 165 184 184 LEU LEU A . n A 1 166 SER 166 185 185 SER SER A . n A 1 167 MET 167 186 186 MET MET A . n A 1 168 VAL 168 187 187 VAL VAL A . n A 1 169 PHE 169 188 188 PHE PHE A . n A 1 170 SER 170 189 189 SER SER A . n A 1 171 ILE 171 190 190 ILE ILE A . n A 1 172 VAL 172 191 191 VAL VAL A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2800 ? 1 MORE -25 ? 1 'SSA (A^2)' 18650 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 23.4555000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 154 ? A ASP 173 ? 1_555 ZN ? D ZN . ? A ZN 993 ? 1_555 OD2 ? A ASP 152 ? A ASP 171 ? 1_555 106.1 ? 2 OD2 ? A ASP 154 ? A ASP 173 ? 1_555 ZN ? D ZN . ? A ZN 993 ? 1_555 O ? E HOH . ? A HOH 16 ? 1_555 111.1 ? 3 OD2 ? A ASP 152 ? A ASP 171 ? 1_555 ZN ? D ZN . ? A ZN 993 ? 1_555 O ? E HOH . ? A HOH 16 ? 1_555 135.4 ? 4 OD1 ? A ASP 17 ? A ASP 36 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 OD2 ? A ASP 19 ? A ASP 38 ? 1_555 93.2 ? 5 OD1 ? A ASP 17 ? A ASP 36 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 O ? A VAL 23 ? A VAL 42 ? 1_555 96.0 ? 6 OD2 ? A ASP 19 ? A ASP 38 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 O ? A VAL 23 ? A VAL 42 ? 1_555 147.2 ? 7 OD1 ? A ASP 17 ? A ASP 36 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 O ? E HOH . ? A HOH 14 ? 1_555 174.0 ? 8 OD2 ? A ASP 19 ? A ASP 38 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 O ? E HOH . ? A HOH 14 ? 1_555 84.8 ? 9 O ? A VAL 23 ? A VAL 42 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 O ? E HOH . ? A HOH 14 ? 1_555 82.8 ? 10 OD1 ? A ASP 17 ? A ASP 36 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 OE1 ? A GLU 28 ? A GLU 47 ? 1_555 94.0 ? 11 OD2 ? A ASP 19 ? A ASP 38 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 OE1 ? A GLU 28 ? A GLU 47 ? 1_555 109.3 ? 12 O ? A VAL 23 ? A VAL 42 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 OE1 ? A GLU 28 ? A GLU 47 ? 1_555 101.4 ? 13 O ? E HOH . ? A HOH 14 ? 1_555 ZN ? B ZN . ? A ZN 991 ? 1_555 OE1 ? A GLU 28 ? A GLU 47 ? 1_555 91.9 ? 14 OD1 ? A ASP 84 ? A ASP 103 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 OG ? A SER 88 ? A SER 107 ? 1_555 101.6 ? 15 OD1 ? A ASP 84 ? A ASP 103 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 OD2 ? A ASP 86 ? A ASP 105 ? 1_555 129.5 ? 16 OG ? A SER 88 ? A SER 107 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 OD2 ? A ASP 86 ? A ASP 105 ? 1_555 75.7 ? 17 OD1 ? A ASP 84 ? A ASP 103 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 OE1 ? A GLU 95 ? A GLU 114 ? 1_555 126.5 ? 18 OG ? A SER 88 ? A SER 107 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 OE1 ? A GLU 95 ? A GLU 114 ? 1_555 130.7 ? 19 OD2 ? A ASP 86 ? A ASP 105 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 OE1 ? A GLU 95 ? A GLU 114 ? 1_555 80.6 ? 20 OD1 ? A ASP 84 ? A ASP 103 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 O ? E HOH . ? A HOH 12 ? 1_555 146.4 ? 21 OG ? A SER 88 ? A SER 107 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 O ? E HOH . ? A HOH 12 ? 1_555 53.4 ? 22 OD2 ? A ASP 86 ? A ASP 105 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 O ? E HOH . ? A HOH 12 ? 1_555 71.1 ? 23 OE1 ? A GLU 95 ? A GLU 114 ? 1_555 ZN ? C ZN . ? A ZN 992 ? 1_555 O ? E HOH . ? A HOH 12 ? 1_555 78.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-08 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 107 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 12 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 76 ? ? -117.83 50.52 2 1 ARG A 143 ? ? -59.26 -4.74 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 2 ? A ALA 1 2 1 Y 1 A ALA 21 ? A ALA 2 3 1 Y 1 A LEU 22 ? A LEU 3 4 1 Y 1 A PRO 23 ? A PRO 4 5 1 Y 1 A ASP 24 ? A ASP 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 991 991 ZN ZN A . C 2 ZN 1 992 992 ZN ZN A . D 2 ZN 1 993 993 ZN ZN A . E 3 HOH 1 1 1 HOH HOH A . E 3 HOH 2 3 3 HOH HOH A . E 3 HOH 3 4 4 HOH HOH A . E 3 HOH 4 5 5 HOH HOH A . E 3 HOH 5 6 6 HOH HOH A . E 3 HOH 6 7 7 HOH HOH A . E 3 HOH 7 8 8 HOH HOH A . E 3 HOH 8 9 9 HOH HOH A . E 3 HOH 9 10 10 HOH HOH A . E 3 HOH 10 11 11 HOH HOH A . E 3 HOH 11 12 12 HOH HOH A . E 3 HOH 12 13 13 HOH HOH A . E 3 HOH 13 14 14 HOH HOH A . E 3 HOH 14 15 15 HOH HOH A . E 3 HOH 15 16 16 HOH HOH A . E 3 HOH 16 192 2 HOH HOH A . #