HEADER CELL CYCLE/REPLICATION 07-DEC-09 3ABD TITLE STRUCTURE OF HUMAN REV7 IN COMPLEX WITH A HUMAN REV3 FRAGMENT IN A TITLE 2 MONOCLINIC CRYSTAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REV7, MAD2-LIKE 2, HREV7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA POLYMERASE ZETA CATALYTIC SUBUNIT; COMPND 9 CHAIN: X, Y; COMPND 10 FRAGMENT: RESIDUES 1847-1898; COMPND 11 SYNONYM: REV3, HREV3; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REV7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: REV3; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET KEYWDS DNA POLYMERASE, HORMA, DNA REPLICATION, TRANSLESION DNA SYNTHESIS, KEYWDS 2 CELL CYCLE, CELL DIVISION, MITOSIS, DNA DAMAGE, DNA REPAIR, DNA- KEYWDS 3 BINDING, DNA-DIRECTED DNA POLYMERASE, CELL CYCLE-REPLICATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.HARA,H.HASHIMOTO,Y.MURAKUMO,S.KOBAYASHI,T.KOGAME,S.UNZAI,S.AKASHI, AUTHOR 2 S.TAKEDA,T.SHIMIZU,M.SATO REVDAT 5 10-NOV-21 3ABD 1 REMARK SEQADV REVDAT 4 11-OCT-17 3ABD 1 REMARK REVDAT 3 13-JUL-11 3ABD 1 VERSN REVDAT 2 21-APR-10 3ABD 1 JRNL REVDAT 1 16-FEB-10 3ABD 0 JRNL AUTH K.HARA,H.HASHIMOTO,Y.MURAKUMO,S.KOBAYASHI,T.KOGAME,S.UNZAI, JRNL AUTH 2 S.AKASHI,S.TAKEDA,T.SHIMIZU,M.SATO JRNL TITL CRYSTAL STRUCTURE OF HUMAN REV7 IN COMPLEX WITH A HUMAN REV3 JRNL TITL 2 FRAGMENT AND STRUCTURAL IMPLICATION OF THE INTERACTION JRNL TITL 3 BETWEEN DNA POLYMERASE {ZETA} AND REV1 JRNL REF J.BIOL.CHEM. V. 285 12299 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20164194 JRNL DOI 10.1074/JBC.M109.092403 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1780 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.618 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3361 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3165 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4577 ; 1.689 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7361 ; 1.115 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 411 ; 5.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;29.522 ;24.779 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;15.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;27.738 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3608 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 594 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2104 ; 0.927 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 822 ; 0.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3453 ; 1.716 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1257 ; 2.742 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1124 ; 4.445 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3730 0.1100 10.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0701 REMARK 3 T33: 0.0105 T12: -0.0001 REMARK 3 T13: -0.0045 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.2894 L22: 2.0152 REMARK 3 L33: 1.6599 L12: -0.0947 REMARK 3 L13: 0.5621 L23: 0.3264 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.1184 S13: 0.0032 REMARK 3 S21: 0.1358 S22: 0.0176 S23: 0.0158 REMARK 3 S31: 0.0018 S32: -0.1246 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0050 22.7090 41.3890 REMARK 3 T TENSOR REMARK 3 T11: 0.0861 T22: 0.0581 REMARK 3 T33: 0.0152 T12: 0.0184 REMARK 3 T13: 0.0080 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.9878 L22: 2.1264 REMARK 3 L33: 1.7329 L12: -0.0363 REMARK 3 L13: -0.0117 L23: 0.5576 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: 0.0512 S13: -0.0225 REMARK 3 S21: -0.2108 S22: -0.0372 S23: -0.0120 REMARK 3 S31: -0.0057 S32: -0.0142 S33: -0.0383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ABD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000029044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35667 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 2000 MME, 0.8M SODIUM FORMATE, REMARK 280 0.1M TRIS-HCL PH 7.5,, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.00450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 GLN A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ASN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 ARG A 6 REMARK 465 GLN A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 ASN A 10 REMARK 465 PHE A 11 REMARK 465 LEU A 107 REMARK 465 LEU A 108 REMARK 465 SER A 109 REMARK 465 ILE A 110 REMARK 465 SER A 111 REMARK 465 SER A 112 REMARK 465 GLU A 154 REMARK 465 ALA A 155 REMARK 465 ALA A 156 REMARK 465 THR A 157 REMARK 465 ARG A 158 REMARK 465 ASN A 159 REMARK 465 MET A 160 REMARK 465 GLU A 161 REMARK 465 LYS A 162 REMARK 465 ILE A 163 REMARK 465 GLN A 164 REMARK 465 VAL A 165 REMARK 465 ILE A 166 REMARK 465 LYS A 167 REMARK 465 MET X 1847 REMARK 465 LEU X 1848 REMARK 465 THR X 1849 REMARK 465 PRO X 1850 REMARK 465 THR X 1851 REMARK 465 PRO X 1852 REMARK 465 ASP X 1853 REMARK 465 SER X 1854 REMARK 465 SER X 1855 REMARK 465 PRO X 1856 REMARK 465 ARG X 1857 REMARK 465 SER X 1858 REMARK 465 THR X 1859 REMARK 465 SER X 1860 REMARK 465 SER X 1861 REMARK 465 PRO X 1862 REMARK 465 SER X 1863 REMARK 465 GLN X 1864 REMARK 465 SER X 1865 REMARK 465 LYS X 1866 REMARK 465 ASN X 1867 REMARK 465 GLY X 1868 REMARK 465 SER X 1869 REMARK 465 PHE X 1870 REMARK 465 THR X 1871 REMARK 465 PRO X 1872 REMARK 465 ARG X 1873 REMARK 465 LEU X 1895 REMARK 465 ASP X 1896 REMARK 465 HIS X 1897 REMARK 465 ASP X 1898 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 SER B -5 REMARK 465 GLN B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 ASN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 LEU B 4 REMARK 465 THR B 5 REMARK 465 ARG B 6 REMARK 465 GLN B 7 REMARK 465 ASP B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 154 REMARK 465 ALA B 155 REMARK 465 ALA B 156 REMARK 465 THR B 157 REMARK 465 ARG B 158 REMARK 465 ASN B 159 REMARK 465 MET B 160 REMARK 465 MET Y 1847 REMARK 465 LEU Y 1848 REMARK 465 THR Y 1849 REMARK 465 PRO Y 1850 REMARK 465 THR Y 1851 REMARK 465 PRO Y 1852 REMARK 465 ASP Y 1853 REMARK 465 SER Y 1854 REMARK 465 SER Y 1855 REMARK 465 PRO Y 1856 REMARK 465 ARG Y 1857 REMARK 465 SER Y 1858 REMARK 465 THR Y 1859 REMARK 465 SER Y 1860 REMARK 465 SER Y 1861 REMARK 465 PRO Y 1862 REMARK 465 SER Y 1863 REMARK 465 GLN Y 1864 REMARK 465 SER Y 1865 REMARK 465 LYS Y 1866 REMARK 465 ASN Y 1867 REMARK 465 GLY Y 1868 REMARK 465 SER Y 1869 REMARK 465 PHE Y 1870 REMARK 465 THR Y 1871 REMARK 465 PRO Y 1872 REMARK 465 ARG Y 1873 REMARK 465 ASP Y 1896 REMARK 465 HIS Y 1897 REMARK 465 ASP Y 1898 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 13 CG CD OE1 NE2 REMARK 480 LYS A 44 CD CE NZ REMARK 480 ARG A 45 NE CZ NH1 NH2 REMARK 480 GLU A 76 CD OE1 OE2 REMARK 480 LYS A 77 CD CE NZ REMARK 480 LYS A 90 CD CE NZ REMARK 480 ASP A 113 CG OD1 OD2 REMARK 480 LEU A 115 CG CD1 CD2 REMARK 480 LYS B 44 CE NZ REMARK 480 ARG B 45 CZ NH1 NH2 REMARK 480 LYS B 46 CD CE NZ REMARK 480 LYS B 90 CD CE NZ REMARK 480 LEU B 108 CG CD1 CD2 REMARK 480 GLU B 161 CG CD OE1 OE2 REMARK 480 LYS B 162 CD CE NZ REMARK 480 GLN B 164 CG CD OE1 NE2 REMARK 480 LYS B 167 CB CG CD CE NZ REMARK 480 ASP B 168 CB CG OD1 OD2 REMARK 480 GLN B 177 CG CD OE1 NE2 REMARK 480 THR Y 1874 CB OG1 CG2 REMARK 480 GLU Y 1889 CG CD OE1 OE2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ABE RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A TETRAGONAL CRYSTAL DBREF 3ABD A 1 211 UNP Q9UI95 MD2L2_HUMAN 1 211 DBREF 3ABD X 1847 1898 UNP O60673 DPOLZ_HUMAN 1847 1898 DBREF 3ABD B 1 211 UNP Q9UI95 MD2L2_HUMAN 1 211 DBREF 3ABD Y 1847 1898 UNP O60673 DPOLZ_HUMAN 1847 1898 SEQADV 3ABD MET A -15 UNP Q9UI95 INITIATING METHIONINE SEQADV 3ABD GLY A -14 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD SER A -13 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD SER A -12 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS A -11 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS A -10 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS A -9 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS A -8 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS A -7 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS A -6 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD SER A -5 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD GLN A -4 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD ASP A -3 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD PRO A -2 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD ASN A -1 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD SER A 0 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD ALA A 124 UNP Q9UI95 ARG 124 ENGINEERED MUTATION SEQADV 3ABD MET B -15 UNP Q9UI95 INITIATING METHIONINE SEQADV 3ABD GLY B -14 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD SER B -13 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD SER B -12 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS B -11 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS B -10 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS B -9 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS B -8 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS B -7 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD HIS B -6 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD SER B -5 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD GLN B -4 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD ASP B -3 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD PRO B -2 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD ASN B -1 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD SER B 0 UNP Q9UI95 EXPRESSION TAG SEQADV 3ABD ALA B 124 UNP Q9UI95 ARG 124 ENGINEERED MUTATION SEQRES 1 A 227 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 227 PRO ASN SER MET THR THR LEU THR ARG GLN ASP LEU ASN SEQRES 3 A 227 PHE GLY GLN VAL VAL ALA ASP VAL LEU CYS GLU PHE LEU SEQRES 4 A 227 GLU VAL ALA VAL HIS LEU ILE LEU TYR VAL ARG GLU VAL SEQRES 5 A 227 TYR PRO VAL GLY ILE PHE GLN LYS ARG LYS LYS TYR ASN SEQRES 6 A 227 VAL PRO VAL GLN MET SER CYS HIS PRO GLU LEU ASN GLN SEQRES 7 A 227 TYR ILE GLN ASP THR LEU HIS CYS VAL LYS PRO LEU LEU SEQRES 8 A 227 GLU LYS ASN ASP VAL GLU LYS VAL VAL VAL VAL ILE LEU SEQRES 9 A 227 ASP LYS GLU HIS ARG PRO VAL GLU LYS PHE VAL PHE GLU SEQRES 10 A 227 ILE THR GLN PRO PRO LEU LEU SER ILE SER SER ASP SER SEQRES 11 A 227 LEU LEU SER HIS VAL GLU GLN LEU LEU ALA ALA PHE ILE SEQRES 12 A 227 LEU LYS ILE SER VAL CYS ASP ALA VAL LEU ASP HIS ASN SEQRES 13 A 227 PRO PRO GLY CYS THR PHE THR VAL LEU VAL HIS THR ARG SEQRES 14 A 227 GLU ALA ALA THR ARG ASN MET GLU LYS ILE GLN VAL ILE SEQRES 15 A 227 LYS ASP PHE PRO TRP ILE LEU ALA ASP GLU GLN ASP VAL SEQRES 16 A 227 HIS MET HIS ASP PRO ARG LEU ILE PRO LEU LYS THR MET SEQRES 17 A 227 THR SER ASP ILE LEU LYS MET GLN LEU TYR VAL GLU GLU SEQRES 18 A 227 ARG ALA HIS LYS GLY SER SEQRES 1 X 52 MET LEU THR PRO THR PRO ASP SER SER PRO ARG SER THR SEQRES 2 X 52 SER SER PRO SER GLN SER LYS ASN GLY SER PHE THR PRO SEQRES 3 X 52 ARG THR ALA ASN ILE LEU LYS PRO LEU MET SER PRO PRO SEQRES 4 X 52 SER ARG GLU GLU ILE MET ALA THR LEU LEU ASP HIS ASP SEQRES 1 B 227 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 227 PRO ASN SER MET THR THR LEU THR ARG GLN ASP LEU ASN SEQRES 3 B 227 PHE GLY GLN VAL VAL ALA ASP VAL LEU CYS GLU PHE LEU SEQRES 4 B 227 GLU VAL ALA VAL HIS LEU ILE LEU TYR VAL ARG GLU VAL SEQRES 5 B 227 TYR PRO VAL GLY ILE PHE GLN LYS ARG LYS LYS TYR ASN SEQRES 6 B 227 VAL PRO VAL GLN MET SER CYS HIS PRO GLU LEU ASN GLN SEQRES 7 B 227 TYR ILE GLN ASP THR LEU HIS CYS VAL LYS PRO LEU LEU SEQRES 8 B 227 GLU LYS ASN ASP VAL GLU LYS VAL VAL VAL VAL ILE LEU SEQRES 9 B 227 ASP LYS GLU HIS ARG PRO VAL GLU LYS PHE VAL PHE GLU SEQRES 10 B 227 ILE THR GLN PRO PRO LEU LEU SER ILE SER SER ASP SER SEQRES 11 B 227 LEU LEU SER HIS VAL GLU GLN LEU LEU ALA ALA PHE ILE SEQRES 12 B 227 LEU LYS ILE SER VAL CYS ASP ALA VAL LEU ASP HIS ASN SEQRES 13 B 227 PRO PRO GLY CYS THR PHE THR VAL LEU VAL HIS THR ARG SEQRES 14 B 227 GLU ALA ALA THR ARG ASN MET GLU LYS ILE GLN VAL ILE SEQRES 15 B 227 LYS ASP PHE PRO TRP ILE LEU ALA ASP GLU GLN ASP VAL SEQRES 16 B 227 HIS MET HIS ASP PRO ARG LEU ILE PRO LEU LYS THR MET SEQRES 17 B 227 THR SER ASP ILE LEU LYS MET GLN LEU TYR VAL GLU GLU SEQRES 18 B 227 ARG ALA HIS LYS GLY SER SEQRES 1 Y 52 MET LEU THR PRO THR PRO ASP SER SER PRO ARG SER THR SEQRES 2 Y 52 SER SER PRO SER GLN SER LYS ASN GLY SER PHE THR PRO SEQRES 3 Y 52 ARG THR ALA ASN ILE LEU LYS PRO LEU MET SER PRO PRO SEQRES 4 Y 52 SER ARG GLU GLU ILE MET ALA THR LEU LEU ASP HIS ASP FORMUL 5 HOH *257(H2 O) HELIX 1 1 GLY A 12 ARG A 34 1 23 HELIX 2 2 PRO A 38 GLY A 40 5 3 HELIX 3 3 HIS A 57 LYS A 77 1 21 HELIX 4 4 SER A 114 VAL A 132 1 19 HELIX 5 5 CYS A 133 VAL A 136 5 4 HELIX 6 6 ASP A 175 HIS A 180 1 6 HELIX 7 7 SER X 1886 LEU X 1894 1 9 HELIX 8 8 PHE B 11 ARG B 34 1 24 HELIX 9 9 PRO B 38 GLY B 40 5 3 HELIX 10 10 HIS B 57 LYS B 77 1 21 HELIX 11 11 SER B 114 VAL B 132 1 19 HELIX 12 12 CYS B 133 VAL B 136 5 4 HELIX 13 13 ASP B 175 HIS B 180 1 6 HELIX 14 14 SER Y 1886 LEU Y 1894 1 9 SHEET 1 A 2 PHE A 42 LYS A 47 0 SHEET 2 A 2 VAL A 50 SER A 55 -1 O VAL A 50 N LYS A 47 SHEET 1 B 7 TRP A 171 LEU A 173 0 SHEET 2 B 7 ILE X1877 PRO X1880 -1 O LYS X1879 N ILE A 172 SHEET 3 B 7 THR A 145 THR A 152 -1 N VAL A 150 O LEU X1878 SHEET 4 B 7 VAL A 80 LEU A 88 -1 N VAL A 84 O LEU A 149 SHEET 5 B 7 PRO A 94 THR A 103 -1 O VAL A 95 N ILE A 87 SHEET 6 B 7 LYS A 198 ARG A 206 -1 O LYS A 198 N THR A 103 SHEET 7 B 7 PRO A 184 THR A 193 -1 N LYS A 190 O LEU A 201 SHEET 1 C 2 PHE B 42 LYS B 47 0 SHEET 2 C 2 VAL B 50 SER B 55 -1 O VAL B 52 N ARG B 45 SHEET 1 D 7 TRP B 171 LEU B 173 0 SHEET 2 D 7 ILE Y1877 PRO Y1880 -1 O LYS Y1879 N ILE B 172 SHEET 3 D 7 THR B 145 THR B 152 -1 N VAL B 150 O LEU Y1878 SHEET 4 D 7 VAL B 80 LEU B 88 -1 N VAL B 84 O LEU B 149 SHEET 5 D 7 PRO B 94 THR B 103 -1 O VAL B 95 N ILE B 87 SHEET 6 D 7 LYS B 198 ARG B 206 -1 O TYR B 202 N VAL B 99 SHEET 7 D 7 PRO B 184 MET B 192 -1 N LYS B 190 O LEU B 201 CRYST1 43.870 50.009 107.275 90.00 96.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022795 0.000000 0.002759 0.00000 SCALE2 0.000000 0.019996 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009390 0.00000