data_3ADI # _entry.id 3ADI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ADI pdb_00003adi 10.2210/pdb3adi/pdb NDB NA0438 ? ? RCSB RCSB029117 ? ? WWPDB D_1000029117 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ADG . unspecified PDB 3ADJ . unspecified PDB 3ADL . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ADI _pdbx_database_status.recvd_initial_deposition_date 2010-01-22 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yuan, Y.A.' 1 'Chen, H.Y.' 2 # _citation.id primary _citation.title 'Structure of arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing' _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 594 _citation.page_last 605 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20462493 _citation.pdbx_database_id_DOI 10.1016/j.str.2010.02.006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, S.W.' 1 ? primary 'Chen, H.Y.' 2 ? primary 'Yang, J.' 3 ? primary 'Machida, S.' 4 ? primary 'Chua, N.H.' 5 ? primary 'Yuan, Y.A.' 6 ? # _cell.entry_id 3ADI _cell.length_a 47.620 _cell.length_b 47.620 _cell.length_c 115.377 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3ADI _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'F21M12.9 protein' 8238.390 3 ? ? 'HYL1 dsRBD1, UNP residues 15-84' ? 2 polymer syn ;RNA (5'-R(P*CP*UP*CP*GP*AP*UP*AP*AP*CP*C)-3') ; 3120.925 1 ? ? RNA ? 3 polymer syn ;RNA (5'-R(*GP*GP*UP*UP*AP*UP*CP*GP*AP*G)-3') ; 3217.957 1 ? ? RNA ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Hyponastic leave 1, Putative uncharacterized protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAK GSHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAK A,B,C ? 2 polyribonucleotide no no CUCGAUAACC CUCGAUAACC D ? 3 polyribonucleotide no no GGUUAUCGAG GGUUAUCGAG E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 VAL n 1 5 PHE n 1 6 LYS n 1 7 SER n 1 8 ARG n 1 9 LEU n 1 10 GLN n 1 11 GLU n 1 12 TYR n 1 13 ALA n 1 14 GLN n 1 15 LYS n 1 16 TYR n 1 17 LYS n 1 18 LEU n 1 19 PRO n 1 20 THR n 1 21 PRO n 1 22 VAL n 1 23 TYR n 1 24 GLU n 1 25 ILE n 1 26 VAL n 1 27 LYS n 1 28 GLU n 1 29 GLY n 1 30 PRO n 1 31 SER n 1 32 HIS n 1 33 LYS n 1 34 SER n 1 35 LEU n 1 36 PHE n 1 37 GLN n 1 38 SER n 1 39 THR n 1 40 VAL n 1 41 ILE n 1 42 LEU n 1 43 ASP n 1 44 GLY n 1 45 VAL n 1 46 ARG n 1 47 TYR n 1 48 ASN n 1 49 SER n 1 50 LEU n 1 51 PRO n 1 52 GLY n 1 53 PHE n 1 54 PHE n 1 55 ASN n 1 56 ARG n 1 57 LYS n 1 58 ALA n 1 59 ALA n 1 60 GLU n 1 61 GLN n 1 62 SER n 1 63 ALA n 1 64 ALA n 1 65 GLU n 1 66 VAL n 1 67 ALA n 1 68 LEU n 1 69 ARG n 1 70 GLU n 1 71 LEU n 1 72 ALA n 1 73 LYS n 2 1 C n 2 2 U n 2 3 C n 2 4 G n 2 5 A n 2 6 U n 2 7 A n 2 8 A n 2 9 C n 2 10 C n 3 1 G n 3 2 G n 3 3 U n 3 4 U n 3 5 A n 3 6 U n 3 7 C n 3 8 G n 3 9 A n 3 10 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene HYL1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Synthetic RNA' 3 1 sample ? ? ? ? ? 'Synthetic RNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP O04492_ARATH O04492 1 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAK 15 ? 2 PDB 3ADI 3ADI 2 ? ? ? 3 PDB 3ADI 3ADI 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ADI A 4 ? 73 ? O04492 15 ? 84 ? 15 84 2 1 3ADI B 4 ? 73 ? O04492 15 ? 84 ? 15 84 3 1 3ADI C 4 ? 73 ? O04492 15 ? 84 ? 15 84 4 2 3ADI D 1 ? 10 ? 3ADI 1 ? 10 ? 1 10 5 3 3ADI E 1 ? 10 ? 3ADI 1 ? 10 ? 1 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ADI GLY A 1 ? UNP O04492 ? ? 'expression tag' 12 1 1 3ADI SER A 2 ? UNP O04492 ? ? 'expression tag' 13 2 1 3ADI HIS A 3 ? UNP O04492 ? ? 'expression tag' 14 3 2 3ADI GLY B 1 ? UNP O04492 ? ? 'expression tag' 12 4 2 3ADI SER B 2 ? UNP O04492 ? ? 'expression tag' 13 5 2 3ADI HIS B 3 ? UNP O04492 ? ? 'expression tag' 14 6 3 3ADI GLY C 1 ? UNP O04492 ? ? 'expression tag' 12 7 3 3ADI SER C 2 ? UNP O04492 ? ? 'expression tag' 13 8 3 3ADI HIS C 3 ? UNP O04492 ? ? 'expression tag' 14 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ADI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_percent_sol 41.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG8000, AS, Cacodylate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 1.54 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3ADI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 40 _reflns.d_resolution_high 3.2 _reflns.number_obs 3783 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.101 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.7 _reflns.pdbx_netI_over_sigmaI 19.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 3.3 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.975 _reflns_shell.meanI_over_sigI_obs 4.7 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3ADI _refine.ls_number_reflns_obs 3783 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.72 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 98.45 _refine.ls_R_factor_obs 0.21463 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20440 _refine.ls_R_factor_R_free 0.31724 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.6 _refine.ls_number_reflns_R_free 401 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.824 _refine.B_iso_mean 67.858 _refine.aniso_B[1][1] -0.17 _refine.aniso_B[2][2] -0.17 _refine.aniso_B[3][3] 0.35 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1DI2' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.794 _refine.overall_SU_ML 0.647 _refine.overall_SU_B 83.395 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1716 _refine_hist.pdbx_number_atoms_nucleic_acid 422 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2138 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 36.72 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 2225 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.619 2.212 ? 3092 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.875 5.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.657 23.333 ? 81 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 23.315 15.000 ? 315 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.599 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.107 0.200 ? 354 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1525 'X-RAY DIFFRACTION' ? r_nbd_refined 0.264 0.200 ? 1076 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.318 0.200 ? 1441 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.176 0.200 ? 84 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.224 0.200 ? 108 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.236 0.200 ? 10 'X-RAY DIFFRACTION' ? r_mcbond_it 0.497 1.500 ? 1083 'X-RAY DIFFRACTION' ? r_mcangle_it 0.883 2.000 ? 1713 'X-RAY DIFFRACTION' ? r_scbond_it 0.937 3.000 ? 1401 'X-RAY DIFFRACTION' ? r_scangle_it 1.631 4.500 ? 1379 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.201 _refine_ls_shell.d_res_low 3.284 _refine_ls_shell.number_reflns_R_work 255 _refine_ls_shell.R_factor_R_work 0.266 _refine_ls_shell.percent_reflns_obs 97.33 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3ADI _struct.title 'Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ADI _struct_keywords.pdbx_keywords 'GENE REGULATION/RNA' _struct_keywords.text 'HYL1, miRNA processing mechanism, RNA BINDING PROTEIN, GENE REGULATION-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 4 ? TYR A 16 ? VAL A 15 TYR A 27 1 ? 13 HELX_P HELX_P2 2 ASN A 55 ? ALA A 72 ? ASN A 66 ALA A 83 1 ? 18 HELX_P HELX_P3 3 VAL B 4 ? TYR B 16 ? VAL B 15 TYR B 27 1 ? 13 HELX_P HELX_P4 4 PRO B 30 ? SER B 34 ? PRO B 41 SER B 45 5 ? 5 HELX_P HELX_P5 5 ASN B 55 ? LYS B 73 ? ASN B 66 LYS B 84 1 ? 19 HELX_P HELX_P6 6 VAL C 4 ? GLU C 11 ? VAL C 15 GLU C 22 1 ? 8 HELX_P HELX_P7 7 GLU C 11 ? TYR C 16 ? GLU C 22 TYR C 27 1 ? 6 HELX_P HELX_P8 8 ASN C 55 ? GLU C 70 ? ASN C 66 GLU C 81 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? D C 1 N3 ? ? ? 1_555 E G 10 N1 ? ? D C 1 E G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? D C 1 N4 ? ? ? 1_555 E G 10 O6 ? ? D C 1 E G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? D C 1 O2 ? ? ? 1_555 E G 10 N2 ? ? D C 1 E G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? D U 2 N3 ? ? ? 1_555 E A 9 N1 ? ? D U 2 E A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? D U 2 O4 ? ? ? 1_555 E A 9 N6 ? ? D U 2 E A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? D C 3 N3 ? ? ? 1_555 E G 8 N1 ? ? D C 3 E G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? D C 3 N4 ? ? ? 1_555 E G 8 O6 ? ? D C 3 E G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? D C 3 O2 ? ? ? 1_555 E G 8 N2 ? ? D C 3 E G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? D G 4 N1 ? ? ? 1_555 E C 7 N3 ? ? D G 4 E C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? D G 4 N2 ? ? ? 1_555 E C 7 O2 ? ? D G 4 E C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? D G 4 O6 ? ? ? 1_555 E C 7 N4 ? ? D G 4 E C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? D A 5 N1 ? ? ? 1_555 E U 6 N3 ? ? D A 5 E U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? D A 5 N6 ? ? ? 1_555 E U 6 O4 ? ? D A 5 E U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? D U 6 N3 ? ? ? 1_555 E A 5 N1 ? ? D U 6 E A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? D U 6 O4 ? ? ? 1_555 E A 5 N6 ? ? D U 6 E A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? D A 7 N1 ? ? ? 1_555 E U 4 N3 ? ? D A 7 E U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? D A 7 N6 ? ? ? 1_555 E U 4 O4 ? ? D A 7 E U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? D A 8 N1 ? ? ? 1_555 E U 3 N3 ? ? D A 8 E U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D A 8 N6 ? ? ? 1_555 E U 3 O4 ? ? D A 8 E U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D C 9 N4 ? ? ? 1_555 E G 2 O6 ? ? D C 9 E G 2 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog21 hydrog ? ? D C 10 N4 ? ? ? 1_555 E G 1 O6 ? ? D C 10 E G 1 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 22 ? GLU A 28 ? VAL A 33 GLU A 39 A 2 LEU A 35 ? LEU A 42 ? LEU A 46 LEU A 53 A 3 VAL A 45 ? ASN A 48 ? VAL A 56 ASN A 59 B 1 VAL B 22 ? LYS B 27 ? VAL B 33 LYS B 38 B 2 PHE B 36 ? LEU B 42 ? PHE B 47 LEU B 53 B 3 VAL B 45 ? ASN B 48 ? VAL B 56 ASN B 59 C 1 VAL C 22 ? GLU C 28 ? VAL C 33 GLU C 39 C 2 LEU C 35 ? LEU C 42 ? LEU C 46 LEU C 53 C 3 VAL C 45 ? ASN C 48 ? VAL C 56 ASN C 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 26 ? N VAL A 37 O GLN A 37 ? O GLN A 48 A 2 3 N VAL A 40 ? N VAL A 51 O TYR A 47 ? O TYR A 58 B 1 2 N VAL B 22 ? N VAL B 33 O ILE B 41 ? O ILE B 52 B 2 3 N VAL B 40 ? N VAL B 51 O TYR B 47 ? O TYR B 58 C 1 2 N GLU C 28 ? N GLU C 39 O LEU C 35 ? O LEU C 46 C 2 3 N VAL C 40 ? N VAL C 51 O TYR C 47 ? O TYR C 58 # _database_PDB_matrix.entry_id 3ADI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ADI _atom_sites.fract_transf_matrix[1][1] 0.021000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008667 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 12 ? ? ? A . n A 1 2 SER 2 13 ? ? ? A . n A 1 3 HIS 3 14 14 HIS HIS A . n A 1 4 VAL 4 15 15 VAL VAL A . n A 1 5 PHE 5 16 16 PHE PHE A . n A 1 6 LYS 6 17 17 LYS LYS A . n A 1 7 SER 7 18 18 SER SER A . n A 1 8 ARG 8 19 19 ARG ARG A . n A 1 9 LEU 9 20 20 LEU LEU A . n A 1 10 GLN 10 21 21 GLN GLN A . n A 1 11 GLU 11 22 22 GLU GLU A . n A 1 12 TYR 12 23 23 TYR TYR A . n A 1 13 ALA 13 24 24 ALA ALA A . n A 1 14 GLN 14 25 25 GLN GLN A . n A 1 15 LYS 15 26 26 LYS LYS A . n A 1 16 TYR 16 27 27 TYR TYR A . n A 1 17 LYS 17 28 28 LYS LYS A . n A 1 18 LEU 18 29 29 LEU LEU A . n A 1 19 PRO 19 30 30 PRO PRO A . n A 1 20 THR 20 31 31 THR THR A . n A 1 21 PRO 21 32 32 PRO PRO A . n A 1 22 VAL 22 33 33 VAL VAL A . n A 1 23 TYR 23 34 34 TYR TYR A . n A 1 24 GLU 24 35 35 GLU GLU A . n A 1 25 ILE 25 36 36 ILE ILE A . n A 1 26 VAL 26 37 37 VAL VAL A . n A 1 27 LYS 27 38 38 LYS LYS A . n A 1 28 GLU 28 39 39 GLU GLU A . n A 1 29 GLY 29 40 40 GLY GLY A . n A 1 30 PRO 30 41 41 PRO PRO A . n A 1 31 SER 31 42 42 SER SER A . n A 1 32 HIS 32 43 43 HIS HIS A . n A 1 33 LYS 33 44 44 LYS LYS A . n A 1 34 SER 34 45 45 SER SER A . n A 1 35 LEU 35 46 46 LEU LEU A . n A 1 36 PHE 36 47 47 PHE PHE A . n A 1 37 GLN 37 48 48 GLN GLN A . n A 1 38 SER 38 49 49 SER SER A . n A 1 39 THR 39 50 50 THR THR A . n A 1 40 VAL 40 51 51 VAL VAL A . n A 1 41 ILE 41 52 52 ILE ILE A . n A 1 42 LEU 42 53 53 LEU LEU A . n A 1 43 ASP 43 54 54 ASP ASP A . n A 1 44 GLY 44 55 55 GLY GLY A . n A 1 45 VAL 45 56 56 VAL VAL A . n A 1 46 ARG 46 57 57 ARG ARG A . n A 1 47 TYR 47 58 58 TYR TYR A . n A 1 48 ASN 48 59 59 ASN ASN A . n A 1 49 SER 49 60 60 SER SER A . n A 1 50 LEU 50 61 61 LEU LEU A . n A 1 51 PRO 51 62 62 PRO PRO A . n A 1 52 GLY 52 63 63 GLY GLY A . n A 1 53 PHE 53 64 64 PHE PHE A . n A 1 54 PHE 54 65 65 PHE PHE A . n A 1 55 ASN 55 66 66 ASN ASN A . n A 1 56 ARG 56 67 67 ARG ARG A . n A 1 57 LYS 57 68 68 LYS LYS A . n A 1 58 ALA 58 69 69 ALA ALA A . n A 1 59 ALA 59 70 70 ALA ALA A . n A 1 60 GLU 60 71 71 GLU GLU A . n A 1 61 GLN 61 72 72 GLN GLN A . n A 1 62 SER 62 73 73 SER SER A . n A 1 63 ALA 63 74 74 ALA ALA A . n A 1 64 ALA 64 75 75 ALA ALA A . n A 1 65 GLU 65 76 76 GLU GLU A . n A 1 66 VAL 66 77 77 VAL VAL A . n A 1 67 ALA 67 78 78 ALA ALA A . n A 1 68 LEU 68 79 79 LEU LEU A . n A 1 69 ARG 69 80 80 ARG ARG A . n A 1 70 GLU 70 81 81 GLU GLU A . n A 1 71 LEU 71 82 82 LEU LEU A . n A 1 72 ALA 72 83 83 ALA ALA A . n A 1 73 LYS 73 84 84 LYS LYS A . n B 1 1 GLY 1 12 ? ? ? B . n B 1 2 SER 2 13 ? ? ? B . n B 1 3 HIS 3 14 14 HIS HIS B . n B 1 4 VAL 4 15 15 VAL VAL B . n B 1 5 PHE 5 16 16 PHE PHE B . n B 1 6 LYS 6 17 17 LYS LYS B . n B 1 7 SER 7 18 18 SER SER B . n B 1 8 ARG 8 19 19 ARG ARG B . n B 1 9 LEU 9 20 20 LEU LEU B . n B 1 10 GLN 10 21 21 GLN GLN B . n B 1 11 GLU 11 22 22 GLU GLU B . n B 1 12 TYR 12 23 23 TYR TYR B . n B 1 13 ALA 13 24 24 ALA ALA B . n B 1 14 GLN 14 25 25 GLN GLN B . n B 1 15 LYS 15 26 26 LYS LYS B . n B 1 16 TYR 16 27 27 TYR TYR B . n B 1 17 LYS 17 28 28 LYS LYS B . n B 1 18 LEU 18 29 29 LEU LEU B . n B 1 19 PRO 19 30 30 PRO PRO B . n B 1 20 THR 20 31 31 THR THR B . n B 1 21 PRO 21 32 32 PRO PRO B . n B 1 22 VAL 22 33 33 VAL VAL B . n B 1 23 TYR 23 34 34 TYR TYR B . n B 1 24 GLU 24 35 35 GLU GLU B . n B 1 25 ILE 25 36 36 ILE ILE B . n B 1 26 VAL 26 37 37 VAL VAL B . n B 1 27 LYS 27 38 38 LYS LYS B . n B 1 28 GLU 28 39 39 GLU GLU B . n B 1 29 GLY 29 40 40 GLY GLY B . n B 1 30 PRO 30 41 41 PRO PRO B . n B 1 31 SER 31 42 42 SER SER B . n B 1 32 HIS 32 43 43 HIS HIS B . n B 1 33 LYS 33 44 44 LYS LYS B . n B 1 34 SER 34 45 45 SER SER B . n B 1 35 LEU 35 46 46 LEU LEU B . n B 1 36 PHE 36 47 47 PHE PHE B . n B 1 37 GLN 37 48 48 GLN GLN B . n B 1 38 SER 38 49 49 SER SER B . n B 1 39 THR 39 50 50 THR THR B . n B 1 40 VAL 40 51 51 VAL VAL B . n B 1 41 ILE 41 52 52 ILE ILE B . n B 1 42 LEU 42 53 53 LEU LEU B . n B 1 43 ASP 43 54 54 ASP ASP B . n B 1 44 GLY 44 55 55 GLY GLY B . n B 1 45 VAL 45 56 56 VAL VAL B . n B 1 46 ARG 46 57 57 ARG ARG B . n B 1 47 TYR 47 58 58 TYR TYR B . n B 1 48 ASN 48 59 59 ASN ASN B . n B 1 49 SER 49 60 60 SER SER B . n B 1 50 LEU 50 61 61 LEU LEU B . n B 1 51 PRO 51 62 62 PRO PRO B . n B 1 52 GLY 52 63 63 GLY GLY B . n B 1 53 PHE 53 64 64 PHE PHE B . n B 1 54 PHE 54 65 65 PHE PHE B . n B 1 55 ASN 55 66 66 ASN ASN B . n B 1 56 ARG 56 67 67 ARG ARG B . n B 1 57 LYS 57 68 68 LYS LYS B . n B 1 58 ALA 58 69 69 ALA ALA B . n B 1 59 ALA 59 70 70 ALA ALA B . n B 1 60 GLU 60 71 71 GLU GLU B . n B 1 61 GLN 61 72 72 GLN GLN B . n B 1 62 SER 62 73 73 SER SER B . n B 1 63 ALA 63 74 74 ALA ALA B . n B 1 64 ALA 64 75 75 ALA ALA B . n B 1 65 GLU 65 76 76 GLU GLU B . n B 1 66 VAL 66 77 77 VAL VAL B . n B 1 67 ALA 67 78 78 ALA ALA B . n B 1 68 LEU 68 79 79 LEU LEU B . n B 1 69 ARG 69 80 80 ARG ARG B . n B 1 70 GLU 70 81 81 GLU GLU B . n B 1 71 LEU 71 82 82 LEU LEU B . n B 1 72 ALA 72 83 83 ALA ALA B . n B 1 73 LYS 73 84 84 LYS LYS B . n C 1 1 GLY 1 12 ? ? ? C . n C 1 2 SER 2 13 ? ? ? C . n C 1 3 HIS 3 14 14 HIS HIS C . n C 1 4 VAL 4 15 15 VAL VAL C . n C 1 5 PHE 5 16 16 PHE PHE C . n C 1 6 LYS 6 17 17 LYS LYS C . n C 1 7 SER 7 18 18 SER SER C . n C 1 8 ARG 8 19 19 ARG ARG C . n C 1 9 LEU 9 20 20 LEU LEU C . n C 1 10 GLN 10 21 21 GLN GLN C . n C 1 11 GLU 11 22 22 GLU GLU C . n C 1 12 TYR 12 23 23 TYR TYR C . n C 1 13 ALA 13 24 24 ALA ALA C . n C 1 14 GLN 14 25 25 GLN GLN C . n C 1 15 LYS 15 26 26 LYS LYS C . n C 1 16 TYR 16 27 27 TYR TYR C . n C 1 17 LYS 17 28 28 LYS LYS C . n C 1 18 LEU 18 29 29 LEU LEU C . n C 1 19 PRO 19 30 30 PRO PRO C . n C 1 20 THR 20 31 31 THR THR C . n C 1 21 PRO 21 32 32 PRO PRO C . n C 1 22 VAL 22 33 33 VAL VAL C . n C 1 23 TYR 23 34 34 TYR TYR C . n C 1 24 GLU 24 35 35 GLU GLU C . n C 1 25 ILE 25 36 36 ILE ILE C . n C 1 26 VAL 26 37 37 VAL VAL C . n C 1 27 LYS 27 38 38 LYS LYS C . n C 1 28 GLU 28 39 39 GLU GLU C . n C 1 29 GLY 29 40 40 GLY GLY C . n C 1 30 PRO 30 41 41 PRO PRO C . n C 1 31 SER 31 42 42 SER SER C . n C 1 32 HIS 32 43 43 HIS HIS C . n C 1 33 LYS 33 44 44 LYS LYS C . n C 1 34 SER 34 45 45 SER SER C . n C 1 35 LEU 35 46 46 LEU LEU C . n C 1 36 PHE 36 47 47 PHE PHE C . n C 1 37 GLN 37 48 48 GLN GLN C . n C 1 38 SER 38 49 49 SER SER C . n C 1 39 THR 39 50 50 THR THR C . n C 1 40 VAL 40 51 51 VAL VAL C . n C 1 41 ILE 41 52 52 ILE ILE C . n C 1 42 LEU 42 53 53 LEU LEU C . n C 1 43 ASP 43 54 54 ASP ASP C . n C 1 44 GLY 44 55 55 GLY GLY C . n C 1 45 VAL 45 56 56 VAL VAL C . n C 1 46 ARG 46 57 57 ARG ARG C . n C 1 47 TYR 47 58 58 TYR TYR C . n C 1 48 ASN 48 59 59 ASN ASN C . n C 1 49 SER 49 60 60 SER SER C . n C 1 50 LEU 50 61 61 LEU LEU C . n C 1 51 PRO 51 62 62 PRO PRO C . n C 1 52 GLY 52 63 63 GLY GLY C . n C 1 53 PHE 53 64 64 PHE PHE C . n C 1 54 PHE 54 65 65 PHE PHE C . n C 1 55 ASN 55 66 66 ASN ASN C . n C 1 56 ARG 56 67 67 ARG ARG C . n C 1 57 LYS 57 68 68 LYS LYS C . n C 1 58 ALA 58 69 69 ALA ALA C . n C 1 59 ALA 59 70 70 ALA ALA C . n C 1 60 GLU 60 71 71 GLU GLU C . n C 1 61 GLN 61 72 72 GLN GLN C . n C 1 62 SER 62 73 73 SER SER C . n C 1 63 ALA 63 74 74 ALA ALA C . n C 1 64 ALA 64 75 75 ALA ALA C . n C 1 65 GLU 65 76 76 GLU GLU C . n C 1 66 VAL 66 77 77 VAL VAL C . n C 1 67 ALA 67 78 78 ALA ALA C . n C 1 68 LEU 68 79 79 LEU LEU C . n C 1 69 ARG 69 80 80 ARG ARG C . n C 1 70 GLU 70 81 81 GLU GLU C . n C 1 71 LEU 71 82 82 LEU LEU C . n C 1 72 ALA 72 83 83 ALA ALA C . n C 1 73 LYS 73 84 84 LYS LYS C . n D 2 1 C 1 1 1 C C D . n D 2 2 U 2 2 2 U U D . n D 2 3 C 3 3 3 C C D . n D 2 4 G 4 4 4 G G D . n D 2 5 A 5 5 5 A A D . n D 2 6 U 6 6 6 U U D . n D 2 7 A 7 7 7 A A D . n D 2 8 A 8 8 8 A A D . n D 2 9 C 9 9 9 C C D . n D 2 10 C 10 10 10 C C D . n E 3 1 G 1 1 1 G G E . n E 3 2 G 2 2 2 G G E . n E 3 3 U 3 3 3 U U E . n E 3 4 U 4 4 4 U U E . n E 3 5 A 5 5 5 A A E . n E 3 6 U 6 6 6 U U E . n E 3 7 C 7 7 7 C C E . n E 3 8 G 8 8 8 G G E . n E 3 9 A 9 9 9 A A E . n E 3 10 G 10 10 10 G G E . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E 2 1 B 3 1 C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1700 ? 1 MORE -10 ? 1 'SSA (A^2)' 8080 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 19.3489 _pdbx_refine_tls.origin_y 14.2285 _pdbx_refine_tls.origin_z -4.5144 _pdbx_refine_tls.T[1][1] -0.1729 _pdbx_refine_tls.T[2][2] -0.1011 _pdbx_refine_tls.T[3][3] -0.0806 _pdbx_refine_tls.T[1][2] 0.0646 _pdbx_refine_tls.T[1][3] 0.0026 _pdbx_refine_tls.T[2][3] 0.0585 _pdbx_refine_tls.L[1][1] 1.7219 _pdbx_refine_tls.L[2][2] 1.1726 _pdbx_refine_tls.L[3][3] 1.8074 _pdbx_refine_tls.L[1][2] 0.3888 _pdbx_refine_tls.L[1][3] 0.4309 _pdbx_refine_tls.L[2][3] -0.3173 _pdbx_refine_tls.S[1][1] 0.1511 _pdbx_refine_tls.S[1][2] -0.3658 _pdbx_refine_tls.S[1][3] 0.0035 _pdbx_refine_tls.S[2][1] 0.1213 _pdbx_refine_tls.S[2][2] -0.2125 _pdbx_refine_tls.S[2][3] -0.0989 _pdbx_refine_tls.S[3][1] 0.1410 _pdbx_refine_tls.S[3][2] -0.3722 _pdbx_refine_tls.S[3][3] 0.0615 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 14 ? ? A 84 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 B 14 ? ? B 84 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 C 14 ? ? C 84 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D C 1 ? ? "C1'" D C 1 ? ? N1 D C 1 ? ? 113.01 108.50 4.51 0.70 N 2 1 "O4'" D C 3 ? ? "C4'" D C 3 ? ? "C3'" D C 3 ? ? 96.49 104.00 -7.51 1.00 N 3 1 "O4'" D A 8 ? ? "C4'" D A 8 ? ? "C3'" D A 8 ? ? 97.36 104.00 -6.64 1.00 N 4 1 "C1'" D A 8 ? ? "O4'" D A 8 ? ? "C4'" D A 8 ? ? 105.07 109.70 -4.63 0.70 N 5 1 "O4'" D A 8 ? ? "C1'" D A 8 ? ? N9 D A 8 ? ? 113.63 108.50 5.13 0.70 N 6 1 "O4'" D C 9 ? ? "C4'" D C 9 ? ? "C3'" D C 9 ? ? 97.22 104.00 -6.78 1.00 N 7 1 "C1'" D C 9 ? ? "O4'" D C 9 ? ? "C4'" D C 9 ? ? 105.35 109.70 -4.35 0.70 N 8 1 "C3'" E G 1 ? ? "C2'" E G 1 ? ? "C1'" E G 1 ? ? 94.27 101.30 -7.03 0.70 N 9 1 N1 E G 10 ? ? C6 E G 10 ? ? O6 E G 10 ? ? 123.60 119.90 3.70 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 15 ? ? -146.04 -1.68 2 1 LYS A 26 ? ? -47.14 -15.33 3 1 LYS A 28 ? ? 60.99 -14.70 4 1 PRO A 32 ? ? -34.43 123.84 5 1 ALA A 78 ? ? -29.73 -68.49 6 1 ALA A 83 ? ? -48.61 -16.82 7 1 PHE B 16 ? ? -26.43 -57.57 8 1 ALA B 24 ? ? -30.14 -72.54 9 1 LYS B 28 ? ? 42.66 79.27 10 1 LYS B 38 ? ? -104.19 75.39 11 1 SER B 42 ? ? 26.04 -58.21 12 1 GLN B 72 ? ? -53.80 -70.69 13 1 SER B 73 ? ? -26.16 -62.75 14 1 GLU B 81 ? ? -68.56 37.34 15 1 LEU B 82 ? ? -143.39 -34.73 16 1 LEU C 20 ? ? -63.60 -77.53 17 1 GLN C 21 ? ? -24.06 -31.12 18 1 ALA C 24 ? ? -69.03 3.62 19 1 TYR C 27 ? ? -141.82 -7.28 20 1 LYS C 28 ? ? 54.79 83.72 21 1 GLU C 39 ? ? -105.71 -161.12 22 1 SER C 42 ? ? -45.01 -19.02 23 1 LYS C 44 ? ? -117.54 51.71 24 1 ASP C 54 ? ? 39.11 49.81 25 1 GLU C 81 ? ? -77.22 36.80 26 1 LEU C 82 ? ? -132.65 -71.75 27 1 ALA C 83 ? ? -68.13 16.77 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 12 ? A GLY 1 2 1 Y 1 A SER 13 ? A SER 2 3 1 Y 1 B GLY 12 ? B GLY 1 4 1 Y 1 B SER 13 ? B SER 2 5 1 Y 1 C GLY 12 ? C GLY 1 6 1 Y 1 C SER 13 ? C SER 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 PHE N N N N 323 PHE CA C N S 324 PHE C C N N 325 PHE O O N N 326 PHE CB C N N 327 PHE CG C Y N 328 PHE CD1 C Y N 329 PHE CD2 C Y N 330 PHE CE1 C Y N 331 PHE CE2 C Y N 332 PHE CZ C Y N 333 PHE OXT O N N 334 PHE H H N N 335 PHE H2 H N N 336 PHE HA H N N 337 PHE HB2 H N N 338 PHE HB3 H N N 339 PHE HD1 H N N 340 PHE HD2 H N N 341 PHE HE1 H N N 342 PHE HE2 H N N 343 PHE HZ H N N 344 PHE HXT H N N 345 PRO N N N N 346 PRO CA C N S 347 PRO C C N N 348 PRO O O N N 349 PRO CB C N N 350 PRO CG C N N 351 PRO CD C N N 352 PRO OXT O N N 353 PRO H H N N 354 PRO HA H N N 355 PRO HB2 H N N 356 PRO HB3 H N N 357 PRO HG2 H N N 358 PRO HG3 H N N 359 PRO HD2 H N N 360 PRO HD3 H N N 361 PRO HXT H N N 362 SER N N N N 363 SER CA C N S 364 SER C C N N 365 SER O O N N 366 SER CB C N N 367 SER OG O N N 368 SER OXT O N N 369 SER H H N N 370 SER H2 H N N 371 SER HA H N N 372 SER HB2 H N N 373 SER HB3 H N N 374 SER HG H N N 375 SER HXT H N N 376 THR N N N N 377 THR CA C N S 378 THR C C N N 379 THR O O N N 380 THR CB C N R 381 THR OG1 O N N 382 THR CG2 C N N 383 THR OXT O N N 384 THR H H N N 385 THR H2 H N N 386 THR HA H N N 387 THR HB H N N 388 THR HG1 H N N 389 THR HG21 H N N 390 THR HG22 H N N 391 THR HG23 H N N 392 THR HXT H N N 393 TYR N N N N 394 TYR CA C N S 395 TYR C C N N 396 TYR O O N N 397 TYR CB C N N 398 TYR CG C Y N 399 TYR CD1 C Y N 400 TYR CD2 C Y N 401 TYR CE1 C Y N 402 TYR CE2 C Y N 403 TYR CZ C Y N 404 TYR OH O N N 405 TYR OXT O N N 406 TYR H H N N 407 TYR H2 H N N 408 TYR HA H N N 409 TYR HB2 H N N 410 TYR HB3 H N N 411 TYR HD1 H N N 412 TYR HD2 H N N 413 TYR HE1 H N N 414 TYR HE2 H N N 415 TYR HH H N N 416 TYR HXT H N N 417 U OP3 O N N 418 U P P N N 419 U OP1 O N N 420 U OP2 O N N 421 U "O5'" O N N 422 U "C5'" C N N 423 U "C4'" C N R 424 U "O4'" O N N 425 U "C3'" C N S 426 U "O3'" O N N 427 U "C2'" C N R 428 U "O2'" O N N 429 U "C1'" C N R 430 U N1 N N N 431 U C2 C N N 432 U O2 O N N 433 U N3 N N N 434 U C4 C N N 435 U O4 O N N 436 U C5 C N N 437 U C6 C N N 438 U HOP3 H N N 439 U HOP2 H N N 440 U "H5'" H N N 441 U "H5''" H N N 442 U "H4'" H N N 443 U "H3'" H N N 444 U "HO3'" H N N 445 U "H2'" H N N 446 U "HO2'" H N N 447 U "H1'" H N N 448 U H3 H N N 449 U H5 H N N 450 U H6 H N N 451 VAL N N N N 452 VAL CA C N S 453 VAL C C N N 454 VAL O O N N 455 VAL CB C N N 456 VAL CG1 C N N 457 VAL CG2 C N N 458 VAL OXT O N N 459 VAL H H N N 460 VAL H2 H N N 461 VAL HA H N N 462 VAL HB H N N 463 VAL HG11 H N N 464 VAL HG12 H N N 465 VAL HG13 H N N 466 VAL HG21 H N N 467 VAL HG22 H N N 468 VAL HG23 H N N 469 VAL HXT H N N 470 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 PHE N CA sing N N 318 PHE N H sing N N 319 PHE N H2 sing N N 320 PHE CA C sing N N 321 PHE CA CB sing N N 322 PHE CA HA sing N N 323 PHE C O doub N N 324 PHE C OXT sing N N 325 PHE CB CG sing N N 326 PHE CB HB2 sing N N 327 PHE CB HB3 sing N N 328 PHE CG CD1 doub Y N 329 PHE CG CD2 sing Y N 330 PHE CD1 CE1 sing Y N 331 PHE CD1 HD1 sing N N 332 PHE CD2 CE2 doub Y N 333 PHE CD2 HD2 sing N N 334 PHE CE1 CZ doub Y N 335 PHE CE1 HE1 sing N N 336 PHE CE2 CZ sing Y N 337 PHE CE2 HE2 sing N N 338 PHE CZ HZ sing N N 339 PHE OXT HXT sing N N 340 PRO N CA sing N N 341 PRO N CD sing N N 342 PRO N H sing N N 343 PRO CA C sing N N 344 PRO CA CB sing N N 345 PRO CA HA sing N N 346 PRO C O doub N N 347 PRO C OXT sing N N 348 PRO CB CG sing N N 349 PRO CB HB2 sing N N 350 PRO CB HB3 sing N N 351 PRO CG CD sing N N 352 PRO CG HG2 sing N N 353 PRO CG HG3 sing N N 354 PRO CD HD2 sing N N 355 PRO CD HD3 sing N N 356 PRO OXT HXT sing N N 357 SER N CA sing N N 358 SER N H sing N N 359 SER N H2 sing N N 360 SER CA C sing N N 361 SER CA CB sing N N 362 SER CA HA sing N N 363 SER C O doub N N 364 SER C OXT sing N N 365 SER CB OG sing N N 366 SER CB HB2 sing N N 367 SER CB HB3 sing N N 368 SER OG HG sing N N 369 SER OXT HXT sing N N 370 THR N CA sing N N 371 THR N H sing N N 372 THR N H2 sing N N 373 THR CA C sing N N 374 THR CA CB sing N N 375 THR CA HA sing N N 376 THR C O doub N N 377 THR C OXT sing N N 378 THR CB OG1 sing N N 379 THR CB CG2 sing N N 380 THR CB HB sing N N 381 THR OG1 HG1 sing N N 382 THR CG2 HG21 sing N N 383 THR CG2 HG22 sing N N 384 THR CG2 HG23 sing N N 385 THR OXT HXT sing N N 386 TYR N CA sing N N 387 TYR N H sing N N 388 TYR N H2 sing N N 389 TYR CA C sing N N 390 TYR CA CB sing N N 391 TYR CA HA sing N N 392 TYR C O doub N N 393 TYR C OXT sing N N 394 TYR CB CG sing N N 395 TYR CB HB2 sing N N 396 TYR CB HB3 sing N N 397 TYR CG CD1 doub Y N 398 TYR CG CD2 sing Y N 399 TYR CD1 CE1 sing Y N 400 TYR CD1 HD1 sing N N 401 TYR CD2 CE2 doub Y N 402 TYR CD2 HD2 sing N N 403 TYR CE1 CZ doub Y N 404 TYR CE1 HE1 sing N N 405 TYR CE2 CZ sing Y N 406 TYR CE2 HE2 sing N N 407 TYR CZ OH sing N N 408 TYR OH HH sing N N 409 TYR OXT HXT sing N N 410 U OP3 P sing N N 411 U OP3 HOP3 sing N N 412 U P OP1 doub N N 413 U P OP2 sing N N 414 U P "O5'" sing N N 415 U OP2 HOP2 sing N N 416 U "O5'" "C5'" sing N N 417 U "C5'" "C4'" sing N N 418 U "C5'" "H5'" sing N N 419 U "C5'" "H5''" sing N N 420 U "C4'" "O4'" sing N N 421 U "C4'" "C3'" sing N N 422 U "C4'" "H4'" sing N N 423 U "O4'" "C1'" sing N N 424 U "C3'" "O3'" sing N N 425 U "C3'" "C2'" sing N N 426 U "C3'" "H3'" sing N N 427 U "O3'" "HO3'" sing N N 428 U "C2'" "O2'" sing N N 429 U "C2'" "C1'" sing N N 430 U "C2'" "H2'" sing N N 431 U "O2'" "HO2'" sing N N 432 U "C1'" N1 sing N N 433 U "C1'" "H1'" sing N N 434 U N1 C2 sing N N 435 U N1 C6 sing N N 436 U C2 O2 doub N N 437 U C2 N3 sing N N 438 U N3 C4 sing N N 439 U N3 H3 sing N N 440 U C4 O4 doub N N 441 U C4 C5 sing N N 442 U C5 C6 doub N N 443 U C5 H5 sing N N 444 U C6 H6 sing N N 445 VAL N CA sing N N 446 VAL N H sing N N 447 VAL N H2 sing N N 448 VAL CA C sing N N 449 VAL CA CB sing N N 450 VAL CA HA sing N N 451 VAL C O doub N N 452 VAL C OXT sing N N 453 VAL CB CG1 sing N N 454 VAL CB CG2 sing N N 455 VAL CB HB sing N N 456 VAL CG1 HG11 sing N N 457 VAL CG1 HG12 sing N N 458 VAL CG1 HG13 sing N N 459 VAL CG2 HG21 sing N N 460 VAL CG2 HG22 sing N N 461 VAL CG2 HG23 sing N N 462 VAL OXT HXT sing N N 463 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3ADI 'double helix' 3ADI 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 D C 1 1_555 E G 10 1_555 -0.532 0.224 0.283 -1.342 -12.688 -0.711 1 D_C1:G10_E D 1 ? E 10 ? 19 1 1 D U 2 1_555 E A 9 1_555 0.780 -0.566 0.777 -4.487 -4.669 1.492 2 D_U2:A9_E D 2 ? E 9 ? 20 1 1 D C 3 1_555 E G 8 1_555 -0.231 0.039 0.396 2.697 -9.946 -3.196 3 D_C3:G8_E D 3 ? E 8 ? 19 1 1 D G 4 1_555 E C 7 1_555 -1.305 -0.441 0.171 5.494 -1.441 3.520 4 D_G4:C7_E D 4 ? E 7 ? 19 1 1 D A 5 1_555 E U 6 1_555 -0.325 0.010 -0.357 2.466 -13.162 11.830 5 D_A5:U6_E D 5 ? E 6 ? 20 1 1 D U 6 1_555 E A 5 1_555 0.970 -0.343 -0.026 -3.052 2.256 -3.364 6 D_U6:A5_E D 6 ? E 5 ? 20 1 1 D A 7 1_555 E U 4 1_555 0.988 -0.060 -0.041 -5.150 -14.976 -2.330 7 D_A7:U4_E D 7 ? E 4 ? 20 1 1 D A 8 1_555 E U 3 1_555 -0.291 -0.612 -0.275 -4.985 -8.669 5.450 8 D_A8:U3_E D 8 ? E 3 ? 20 1 1 D C 9 1_555 E G 2 1_555 2.201 -0.773 0.414 1.879 -1.183 -20.948 9 D_C9:G2_E D 9 ? E 2 ? ? 1 1 D C 10 1_555 E G 1 1_555 1.944 -0.161 -0.281 5.247 0.725 -16.043 10 D_C10:G1_E D 10 ? E 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 D C 1 1_555 E G 10 1_555 D U 2 1_555 E A 9 1_555 1.060 -0.174 3.553 -4.470 8.203 43.288 -1.048 -1.853 3.348 10.967 5.977 44.237 1 DD_C1U2:A9G10_EE D 1 ? E 10 ? D 2 ? E 9 ? 1 D U 2 1_555 E A 9 1_555 D C 3 1_555 E G 8 1_555 -0.339 -2.241 2.817 4.418 4.530 24.984 -6.033 1.741 2.288 10.262 -10.008 25.760 2 DD_U2C3:G8A9_EE D 2 ? E 9 ? D 3 ? E 8 ? 1 D C 3 1_555 E G 8 1_555 D G 4 1_555 E C 7 1_555 0.654 -1.793 3.229 0.370 2.057 28.189 -4.135 -1.256 3.101 4.215 -0.758 28.265 3 DD_C3G4:C7G8_EE D 3 ? E 8 ? D 4 ? E 7 ? 1 D G 4 1_555 E C 7 1_555 D A 5 1_555 E U 6 1_555 1.144 -1.604 3.468 7.017 10.285 28.456 -5.023 -0.759 2.921 19.769 -13.489 31.009 4 DD_G4A5:U6C7_EE D 4 ? E 7 ? D 5 ? E 6 ? 1 D A 5 1_555 E U 6 1_555 D U 6 1_555 E A 5 1_555 -0.858 -1.412 3.382 -3.610 10.882 39.686 -3.168 0.832 2.974 15.638 5.188 41.245 5 DD_A5U6:A5U6_EE D 5 ? E 6 ? D 6 ? E 5 ? 1 D U 6 1_555 E A 5 1_555 D A 7 1_555 E U 4 1_555 -1.088 -1.420 3.323 0.919 7.992 28.186 -4.455 2.340 2.787 16.003 -1.841 29.289 6 DD_U6A7:U4A5_EE D 6 ? E 5 ? D 7 ? E 4 ? 1 D A 7 1_555 E U 4 1_555 D A 8 1_555 E U 3 1_555 0.978 -1.680 3.342 0.513 9.726 21.305 -7.173 -2.251 2.377 24.710 -1.303 23.402 7 DD_A7A8:U3U4_EE D 7 ? E 4 ? D 8 ? E 3 ? 1 D A 8 1_555 E U 3 1_555 D C 9 1_555 E G 2 1_555 -1.138 -1.372 3.427 -7.716 0.354 41.722 -1.935 0.727 3.562 0.492 10.724 42.399 8 DD_A8C9:G2U3_EE D 8 ? E 3 ? D 9 ? E 2 ? 1 D C 9 1_555 E G 2 1_555 D C 10 1_555 E G 1 1_555 -0.705 -2.064 3.101 6.225 0.220 21.071 -5.497 4.050 2.758 0.586 -16.562 21.962 9 DD_C9C10:G1G2_EE D 9 ? E 2 ? D 10 ? E 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DI2 _pdbx_initial_refinement_model.details 'PDB ENTRY 1DI2' #