HEADER TRANSFERASE 04-AUG-10 3ALO TITLE CRYSTAL STRUCTURE OF HUMAN NON-PHOSPHORYLATED MKK4 KINASE DOMAIN TITLE 2 TERNARY COMPLEX WITH AMP-PNP AND P38 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN; COMPND 5 EC: 2.7.12.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: P38 PEPTIDE; COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JNKK1, MAP2K4, MEK4, MKK4, PRKMK4, SERK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS KINASE, ALLOSTERIC BINDING, ACTIVATION HELIX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MATSUMOTO,T.KINOSHITA,Y.KIRII,K.YOKOTA,K.HAMADA,T.TADA REVDAT 3 01-NOV-23 3ALO 1 REMARK SEQADV LINK REVDAT 2 11-OCT-17 3ALO 1 REMARK REVDAT 1 27-OCT-10 3ALO 0 JRNL AUTH T.MATSUMOTO,T.KINOSHITA,Y.KIRII,K.YOKOTA,K.HAMADA,T.TADA JRNL TITL CRYSTAL STRUCTURES OF MKK4 KINASE DOMAIN REVEAL THAT JRNL TITL 2 SUBSTRATE PEPTIDE BINDS TO AN ALLOSTERIC SITE AND INDUCES AN JRNL TITL 3 AUTO-INHIBITION STATE JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 400 369 2010 JRNL REFN ISSN 0006-291X JRNL PMID 20732303 JRNL DOI 10.1016/J.BBRC.2010.08.071 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0081 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 9336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 461 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 697 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2365 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2444 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3307 ; 1.774 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 7.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;38.281 ;24.352 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 443 ;20.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1801 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1753 -20.3937 11.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0129 REMARK 3 T33: 0.0212 T12: 0.0080 REMARK 3 T13: 0.0178 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.2353 L22: 0.9187 REMARK 3 L33: 0.9249 L12: 0.1207 REMARK 3 L13: -0.2046 L23: -0.0655 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: -0.0410 S13: 0.0473 REMARK 3 S21: 0.0695 S22: 0.0131 S23: 0.0920 REMARK 3 S31: -0.0143 S32: -0.0713 S33: -0.0673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3ALO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000029403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9816 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 4.660 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.66 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3ALN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IIDAZOLE-HCL PH6.5, 22% PEG 3350, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.89650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.89650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.38800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.99250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.38800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.99250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.89650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.38800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.99250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.89650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.38800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.99250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -68.77600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.89650 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 79 REMARK 465 SER A 80 REMARK 465 ILE A 81 REMARK 465 GLU A 82 REMARK 465 SER A 83 REMARK 465 SER A 84 REMARK 465 GLY A 85 REMARK 465 LYS A 86 REMARK 465 LEU A 87 REMARK 465 LYS A 88 REMARK 465 ILE A 89 REMARK 465 SER A 90 REMARK 465 PRO A 91 REMARK 465 GLU A 92 REMARK 465 GLN A 93 REMARK 465 HIS A 94 REMARK 465 SER A 278 REMARK 465 ALA A 279 REMARK 465 SER A 280 REMARK 465 ARG A 281 REMARK 465 GLN A 282 REMARK 465 GLY A 283 REMARK 465 ALA A 390 REMARK 465 THR A 391 REMARK 465 PRO A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 MET A 396 REMARK 465 TYR A 397 REMARK 465 VAL A 398 REMARK 465 ASP A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 95 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 95 CZ3 CH2 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 PHE A 97 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 98 OG1 CG2 REMARK 470 LEU A 105 O REMARK 470 PRO A 277 O REMARK 470 TYR A 284 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A 389 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 268 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO A 268 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 97 50.18 -158.55 REMARK 500 ALA A 99 150.75 148.42 REMARK 500 ASP A 101 48.64 -103.19 REMARK 500 ASP A 138 -169.61 -102.15 REMARK 500 SER A 156 14.70 -142.51 REMARK 500 GLU A 171 119.96 -28.62 REMARK 500 ARG A 228 2.20 82.96 REMARK 500 ASP A 229 46.71 -152.39 REMARK 500 ASP A 263 -85.82 -54.38 REMARK 500 ALA A 264 98.51 -57.34 REMARK 500 PRO A 268 -17.03 -48.70 REMARK 500 ASP A 315 -70.69 -64.37 REMARK 500 GLN A 319 41.14 -81.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 266 ARG A 267 147.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 234 OD1 REMARK 620 2 ASP A 247 OD2 92.4 REMARK 620 3 ANP A 406 O1A 172.9 91.6 REMARK 620 4 ANP A 406 O2B 83.0 156.3 90.9 REMARK 620 5 ANP A 406 O3G 80.2 77.6 95.0 78.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ALN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AMP-PNP DBREF 3ALO A 80 399 UNP P45985 MP2K4_HUMAN 80 399 DBREF 3ALO E 3 10 PDB 3ALO 3ALO 3 10 SEQADV 3ALO MET A 79 UNP P45985 INITIATING METHIONINE SEQADV 3ALO HIS A 400 UNP P45985 EXPRESSION TAG SEQADV 3ALO HIS A 401 UNP P45985 EXPRESSION TAG SEQADV 3ALO HIS A 402 UNP P45985 EXPRESSION TAG SEQADV 3ALO HIS A 403 UNP P45985 EXPRESSION TAG SEQADV 3ALO HIS A 404 UNP P45985 EXPRESSION TAG SEQADV 3ALO HIS A 405 UNP P45985 EXPRESSION TAG SEQRES 1 A 327 MET SER ILE GLU SER SER GLY LYS LEU LYS ILE SER PRO SEQRES 2 A 327 GLU GLN HIS TRP ASP PHE THR ALA GLU ASP LEU LYS ASP SEQRES 3 A 327 LEU GLY GLU ILE GLY ARG GLY ALA TYR GLY SER VAL ASN SEQRES 4 A 327 LYS MET VAL HIS LYS PRO SER GLY GLN ILE MET ALA VAL SEQRES 5 A 327 LYS ARG ILE ARG SER THR VAL ASP GLU LYS GLU GLN LYS SEQRES 6 A 327 GLN LEU LEU MET ASP LEU ASP VAL VAL MET ARG SER SER SEQRES 7 A 327 ASP CYS PRO TYR ILE VAL GLN PHE TYR GLY ALA LEU PHE SEQRES 8 A 327 ARG GLU GLY ASP CYS TRP ILE CYS MET GLU LEU MET SER SEQRES 9 A 327 THR SER PHE ASP LYS PHE TYR LYS TYR VAL TYR SER VAL SEQRES 10 A 327 LEU ASP ASP VAL ILE PRO GLU GLU ILE LEU GLY LYS ILE SEQRES 11 A 327 THR LEU ALA THR VAL LYS ALA LEU ASN HIS LEU LYS GLU SEQRES 12 A 327 ASN LEU LYS ILE ILE HIS ARG ASP ILE LYS PRO SER ASN SEQRES 13 A 327 ILE LEU LEU ASP ARG SER GLY ASN ILE LYS LEU CYS ASP SEQRES 14 A 327 PHE GLY ILE SER GLY GLN LEU VAL ASP SER ILE ALA LYS SEQRES 15 A 327 THR ARG ASP ALA GLY CYS ARG PRO TYR MET ALA PRO GLU SEQRES 16 A 327 ARG ILE ASP PRO SER ALA SER ARG GLN GLY TYR ASP VAL SEQRES 17 A 327 ARG SER ASP VAL TRP SER LEU GLY ILE THR LEU TYR GLU SEQRES 18 A 327 LEU ALA THR GLY ARG PHE PRO TYR PRO LYS TRP ASN SER SEQRES 19 A 327 VAL PHE ASP GLN LEU THR GLN VAL VAL LYS GLY ASP PRO SEQRES 20 A 327 PRO GLN LEU SER ASN SER GLU GLU ARG GLU PHE SER PRO SEQRES 21 A 327 SER PHE ILE ASN PHE VAL ASN LEU CYS LEU THR LYS ASP SEQRES 22 A 327 GLU SER LYS ARG PRO LYS TYR LYS GLU LEU LEU LYS HIS SEQRES 23 A 327 PRO PHE ILE LEU MET TYR GLU GLU ARG ALA VAL GLU VAL SEQRES 24 A 327 ALA CYS TYR VAL CYS LYS ILE LEU ASP GLN MET PRO ALA SEQRES 25 A 327 THR PRO SER SER PRO MET TYR VAL ASP HIS HIS HIS HIS SEQRES 26 A 327 HIS HIS SEQRES 1 E 8 ASP ASP GLU MET TPO GLY TYR ALA MODRES 3ALO TPO E 7 THR PHOSPHOTHREONINE HET TPO E 7 11 HET MG A 1 1 HET ANP A 406 31 HETNAM TPO PHOSPHOTHREONINE HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO C4 H10 N O6 P FORMUL 3 MG MG 2+ FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 HOH *27(H2 O) HELIX 1 1 ASP A 138 ARG A 154 1 17 HELIX 2 2 PHE A 185 VAL A 195 1 11 HELIX 3 3 PRO A 201 ASN A 222 1 22 HELIX 4 4 LYS A 231 SER A 233 5 3 HELIX 5 5 GLY A 249 ALA A 264 1 16 HELIX 6 6 ALA A 271 ILE A 275 5 5 HELIX 7 7 ASP A 285 GLY A 303 1 19 HELIX 8 8 SER A 337 LEU A 348 1 12 HELIX 9 9 ASP A 351 ARG A 355 5 5 HELIX 10 10 LYS A 357 LYS A 363 1 7 HELIX 11 11 HIS A 364 ARG A 373 1 10 HELIX 12 12 GLU A 376 ASP A 386 1 11 SHEET 1 A 5 LEU A 102 ARG A 110 0 SHEET 2 A 5 GLY A 114 HIS A 121 -1 O VAL A 116 N ILE A 108 SHEET 3 A 5 ILE A 127 ARG A 134 -1 O ARG A 132 N SER A 115 SHEET 4 A 5 ASP A 173 MET A 178 -1 O MET A 178 N ALA A 129 SHEET 5 A 5 PHE A 164 ARG A 170 -1 N TYR A 165 O CYS A 177 SHEET 1 B 3 THR A 183 SER A 184 0 SHEET 2 B 3 ILE A 235 LEU A 237 -1 O LEU A 237 N THR A 183 SHEET 3 B 3 ILE A 243 LEU A 245 -1 O LYS A 244 N LEU A 236 LINK C MET E 6 N TPO E 7 1555 1555 1.33 LINK C TPO E 7 N GLY E 8 1555 1555 1.33 LINK MG MG A 1 OD1 ASN A 234 1555 1555 2.18 LINK MG MG A 1 OD2 ASP A 247 1555 1555 2.13 LINK MG MG A 1 O1A ANP A 406 1555 1555 1.88 LINK MG MG A 1 O2B ANP A 406 1555 1555 1.99 LINK MG MG A 1 O3G ANP A 406 1555 1555 2.20 CISPEP 1 ALA A 99 GLU A 100 0 1.16 CISPEP 2 GLU A 171 GLY A 172 0 -9.42 CISPEP 3 ARG A 267 PRO A 268 0 5.90 CISPEP 4 ASP A 315 GLN A 316 0 -1.01 SITE 1 AC1 3 ASN A 234 ASP A 247 ANP A 406 SITE 1 AC2 19 MG A 1 ILE A 108 GLY A 109 GLY A 111 SITE 2 AC2 19 GLY A 114 VAL A 116 ALA A 129 LYS A 131 SITE 3 AC2 19 MET A 178 GLU A 179 MET A 181 LYS A 187 SITE 4 AC2 19 ASP A 229 LYS A 231 SER A 233 ASN A 234 SITE 5 AC2 19 LEU A 236 ASP A 247 ARG A 262 CRYST1 68.776 117.985 81.793 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014540 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012226 0.00000