data_3B79 # _entry.id 3B79 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3B79 RCSB RCSB045166 WWPDB D_1000045166 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC90972.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3B79 _pdbx_database_status.recvd_initial_deposition_date 2007-10-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Li, H.' 2 'Abdullah, J.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title ;Crystal structure of the N-terminal peptidase C39 like domain of the toxin secretion ATP-binding protein from Vibrio parahaemolyticus. ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Li, H.' 2 primary 'Abdullah, J.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3B79 _cell.length_a 46.173 _cell.length_b 46.173 _cell.length_c 105.975 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3B79 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toxin secretion ATP-binding protein' 14335.123 1 ? ? 'Peptidase C39 like domain: Residues 1-126' ? 2 water nat water 18.015 173 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)KDPLLNSLIYVSRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAILVL KGGDSCVLNSIN(MSE)ETREAEVTTLESG(MSE)VPISIPLEDLLEQYTGRYFLVKKQFR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMKDPLLNSLIYVSRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAILVLKGGD SCVLNSINMETREAEVTTLESGMVPISIPLEDLLEQYTGRYFLVKKQFR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC90972.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 LYS n 1 6 ASP n 1 7 PRO n 1 8 LEU n 1 9 LEU n 1 10 ASN n 1 11 SER n 1 12 LEU n 1 13 ILE n 1 14 TYR n 1 15 VAL n 1 16 SER n 1 17 ARG n 1 18 TYR n 1 19 TYR n 1 20 GLY n 1 21 LEU n 1 22 ALA n 1 23 ASN n 1 24 SER n 1 25 PRO n 1 26 GLU n 1 27 ALA n 1 28 LEU n 1 29 VAL n 1 30 ASN n 1 31 GLY n 1 32 LEU n 1 33 PRO n 1 34 LEU n 1 35 SER n 1 36 ASP n 1 37 GLY n 1 38 LYS n 1 39 LEU n 1 40 THR n 1 41 PRO n 1 42 PHE n 1 43 LEU n 1 44 LEU n 1 45 PRO n 1 46 ARG n 1 47 ALA n 1 48 ALA n 1 49 GLU n 1 50 ARG n 1 51 ALA n 1 52 GLY n 1 53 LEU n 1 54 VAL n 1 55 ALA n 1 56 LYS n 1 57 GLU n 1 58 ASN n 1 59 ARG n 1 60 ALA n 1 61 GLU n 1 62 LEU n 1 63 GLU n 1 64 LYS n 1 65 ILE n 1 66 SER n 1 67 SER n 1 68 LEU n 1 69 ILE n 1 70 LEU n 1 71 PRO n 1 72 ALA n 1 73 ILE n 1 74 LEU n 1 75 VAL n 1 76 LEU n 1 77 LYS n 1 78 GLY n 1 79 GLY n 1 80 ASP n 1 81 SER n 1 82 CYS n 1 83 VAL n 1 84 LEU n 1 85 ASN n 1 86 SER n 1 87 ILE n 1 88 ASN n 1 89 MSE n 1 90 GLU n 1 91 THR n 1 92 ARG n 1 93 GLU n 1 94 ALA n 1 95 GLU n 1 96 VAL n 1 97 THR n 1 98 THR n 1 99 LEU n 1 100 GLU n 1 101 SER n 1 102 GLY n 1 103 MSE n 1 104 VAL n 1 105 PRO n 1 106 ILE n 1 107 SER n 1 108 ILE n 1 109 PRO n 1 110 LEU n 1 111 GLU n 1 112 ASP n 1 113 LEU n 1 114 LEU n 1 115 GLU n 1 116 GLN n 1 117 TYR n 1 118 THR n 1 119 GLY n 1 120 ARG n 1 121 TYR n 1 122 PHE n 1 123 LEU n 1 124 VAL n 1 125 LYS n 1 126 LYS n 1 127 GLN n 1 128 PHE n 1 129 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Vibrio _entity_src_gen.pdbx_gene_src_gene VPA1736 _entity_src_gen.gene_src_species 'Vibrio parahaemolyticus' _entity_src_gen.gene_src_strain 'RIMD 2210633 / Serotype O3:K6' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio parahaemolyticus RIMD 2210633' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223926 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q87FE3_VIBPA _struct_ref.pdbx_db_accession Q87FE3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKDPLLNSLIYVSRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAILVLKGGDSCV LNSINMETREAEVTTLESGMVPISIPLEDLLEQYTGRYFLVKKQFR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3B79 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q87FE3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 126 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 126 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3B79 SER A 1 ? UNP Q87FE3 ? ? 'EXPRESSION TAG' -2 1 1 3B79 ASN A 2 ? UNP Q87FE3 ? ? 'EXPRESSION TAG' -1 2 1 3B79 ALA A 3 ? UNP Q87FE3 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3B79 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '1.0 M Ammonium citrate (dibasic), 0.1 M Sodium acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-10-24 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97930 # _reflns.entry_id 3B79 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.37 _reflns.d_resolution_low 42.33 _reflns.number_all 24811 _reflns.number_obs 24811 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.1 _reflns.B_iso_Wilson_estimate 14.53 _reflns.pdbx_redundancy 16.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.37 _reflns_shell.d_res_low 1.42 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.394 _reflns_shell.meanI_over_sigI_obs 6.0 _reflns_shell.pdbx_redundancy 14.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2406 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3B79 _refine.ls_number_reflns_obs 22212 _refine.ls_number_reflns_all 22212 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.33 _refine.ls_d_res_high 1.37 _refine.ls_percent_reflns_obs 99.09 _refine.ls_R_factor_obs 0.158 _refine.ls_R_factor_all 0.158 _refine.ls_R_factor_R_work 0.155 _refine.ls_R_factor_R_free 0.182 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 2508 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.B_iso_mean 18.387 _refine.aniso_B[1][1] 0.36 _refine.aniso_B[2][2] 0.36 _refine.aniso_B[3][3] -0.72 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.080 _refine.pdbx_overall_ESU_R_Free 0.063 _refine.overall_SU_ML 0.033 _refine.overall_SU_B 1.694 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1154 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 173 _refine_hist.number_atoms_total 1327 _refine_hist.d_res_high 1.37 _refine_hist.d_res_low 42.33 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1188 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.662 2.027 ? 1637 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.550 5.000 ? 166 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.675 25.000 ? 48 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.810 15.000 ? 226 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.848 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.101 0.200 ? 186 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 930 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.301 0.200 ? 608 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 855 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.172 0.200 ? 130 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.168 0.200 ? 53 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.214 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.897 1.500 ? 785 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.565 2.000 ? 1250 'X-RAY DIFFRACTION' ? r_scbond_it 3.556 3.000 ? 453 'X-RAY DIFFRACTION' ? r_scangle_it 4.996 4.500 ? 387 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.923 3.000 ? 1238 'X-RAY DIFFRACTION' ? r_sphericity_free 8.776 3.000 ? 173 'X-RAY DIFFRACTION' ? r_sphericity_bonded 4.858 3.000 ? 1154 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.370 _refine_ls_shell.d_res_low 1.406 _refine_ls_shell.number_reflns_R_work 1568 _refine_ls_shell.R_factor_R_work 0.19 _refine_ls_shell.percent_reflns_obs 98.17 _refine_ls_shell.R_factor_R_free 0.229 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 201 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1769 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B79 _struct.title ;Crystal structure of the N-terminal peptidase C39 like domain of the toxin secretion ATP-binding protein from Vibrio parahaemolyticus ; _struct.pdbx_descriptor 'Toxin secretion ATP-binding protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B79 _struct_keywords.pdbx_keywords 'NUCLEOTIDE BINDING PROTEIN' _struct_keywords.text ;alpha-beta structure, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, ATP-binding, Membrane, Nucleotide-binding, Transmembrane, NUCLEOTIDE BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? TYR A 19 ? ASP A 3 TYR A 16 1 ? 14 HELX_P HELX_P2 2 SER A 24 ? ASN A 30 ? SER A 21 ASN A 27 1 ? 7 HELX_P HELX_P3 3 LEU A 43 ? ALA A 51 ? LEU A 40 ALA A 48 1 ? 9 HELX_P HELX_P4 4 GLU A 61 ? ILE A 65 ? GLU A 58 ILE A 62 5 ? 5 HELX_P HELX_P5 5 SER A 66 ? LEU A 70 ? SER A 63 LEU A 67 5 ? 5 HELX_P HELX_P6 6 LEU A 110 ? GLN A 116 ? LEU A 107 GLN A 113 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N A ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N B ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A MSE 4 C A ? ? 1_555 A LYS 5 N A ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.335 ? covale4 covale ? ? A MSE 4 C B ? ? 1_555 A LYS 5 N B ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A ASN 88 C ? ? ? 1_555 A MSE 89 N ? ? A ASN 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.341 ? covale6 covale ? ? A MSE 89 C ? ? ? 1_555 A GLU 90 N A ? A MSE 86 A GLU 87 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A MSE 89 C ? ? ? 1_555 A GLU 90 N B ? A MSE 86 A GLU 87 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A GLY 102 C ? ? ? 1_555 A MSE 103 N ? ? A GLY 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.337 ? covale9 covale ? ? A MSE 103 C ? ? ? 1_555 A VAL 104 N ? ? A MSE 100 A VAL 101 1_555 ? ? ? ? ? ? ? 1.346 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 70 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 67 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 71 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 68 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 4.27 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 53 ? ARG A 59 ? LEU A 50 ARG A 56 A 2 TYR A 117 ? LYS A 126 ? TYR A 114 LYS A 123 A 3 ALA A 72 ? LEU A 76 ? ALA A 69 LEU A 73 A 4 ASP A 80 ? ASN A 88 ? ASP A 77 ASN A 85 A 5 GLU A 93 ? THR A 97 ? GLU A 90 THR A 94 A 6 ILE A 106 ? PRO A 109 ? ILE A 103 PRO A 106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 58 ? N ASN A 55 O TYR A 121 ? O TYR A 118 A 2 3 O PHE A 122 ? O PHE A 119 N ILE A 73 ? N ILE A 70 A 3 4 N LEU A 74 ? N LEU A 71 O CYS A 82 ? O CYS A 79 A 4 5 N ASN A 88 ? N ASN A 85 O GLU A 93 ? O GLU A 90 A 5 6 N VAL A 96 ? N VAL A 93 O ILE A 106 ? O ILE A 103 # _database_PDB_matrix.entry_id 3B79 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3B79 _atom_sites.fract_transf_matrix[1][1] 0.021658 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021658 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009436 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 LYS 5 2 2 LYS LYS A . n A 1 6 ASP 6 3 3 ASP ASP A . n A 1 7 PRO 7 4 4 PRO PRO A . n A 1 8 LEU 8 5 5 LEU LEU A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 ASN 10 7 7 ASN ASN A . n A 1 11 SER 11 8 8 SER SER A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 ILE 13 10 10 ILE ILE A . n A 1 14 TYR 14 11 11 TYR TYR A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 SER 16 13 13 SER SER A . n A 1 17 ARG 17 14 14 ARG ARG A . n A 1 18 TYR 18 15 15 TYR TYR A . n A 1 19 TYR 19 16 16 TYR TYR A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 ASN 23 20 20 ASN ASN A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 PRO 25 22 22 PRO PRO A . n A 1 26 GLU 26 23 23 GLU GLU A . n A 1 27 ALA 27 24 24 ALA ALA A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 ASN 30 27 27 ASN ASN A . n A 1 31 GLY 31 28 28 GLY GLY A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 PRO 33 30 30 PRO PRO A . n A 1 34 LEU 34 31 31 LEU LEU A . n A 1 35 SER 35 32 32 SER SER A . n A 1 36 ASP 36 33 33 ASP ASP A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 LYS 38 35 35 LYS LYS A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 THR 40 37 37 THR THR A . n A 1 41 PRO 41 38 38 PRO PRO A . n A 1 42 PHE 42 39 39 PHE PHE A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 LEU 44 41 41 LEU LEU A . n A 1 45 PRO 45 42 42 PRO PRO A . n A 1 46 ARG 46 43 43 ARG ARG A . n A 1 47 ALA 47 44 44 ALA ALA A . n A 1 48 ALA 48 45 45 ALA ALA A . n A 1 49 GLU 49 46 46 GLU GLU A . n A 1 50 ARG 50 47 47 ARG ARG A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 GLY 52 49 49 GLY GLY A . n A 1 53 LEU 53 50 50 LEU LEU A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 ALA 55 52 52 ALA ALA A . n A 1 56 LYS 56 53 53 LYS LYS A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 ASN 58 55 55 ASN ASN A . n A 1 59 ARG 59 56 56 ARG ARG A . n A 1 60 ALA 60 57 57 ALA ALA A . n A 1 61 GLU 61 58 58 GLU GLU A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 LYS 64 61 61 LYS LYS A . n A 1 65 ILE 65 62 62 ILE ILE A . n A 1 66 SER 66 63 63 SER SER A . n A 1 67 SER 67 64 64 SER SER A . n A 1 68 LEU 68 65 65 LEU LEU A . n A 1 69 ILE 69 66 66 ILE ILE A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 PRO 71 68 68 PRO PRO A . n A 1 72 ALA 72 69 69 ALA ALA A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 LEU 74 71 71 LEU LEU A . n A 1 75 VAL 75 72 72 VAL VAL A . n A 1 76 LEU 76 73 73 LEU LEU A . n A 1 77 LYS 77 74 74 LYS LYS A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 GLY 79 76 76 GLY GLY A . n A 1 80 ASP 80 77 77 ASP ASP A . n A 1 81 SER 81 78 78 SER SER A . n A 1 82 CYS 82 79 79 CYS CYS A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 LEU 84 81 81 LEU LEU A . n A 1 85 ASN 85 82 82 ASN ASN A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 ILE 87 84 84 ILE ILE A . n A 1 88 ASN 88 85 85 ASN ASN A . n A 1 89 MSE 89 86 86 MSE MSE A . n A 1 90 GLU 90 87 87 GLU GLU A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 ARG 92 89 89 ARG ARG A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 ALA 94 91 91 ALA ALA A . n A 1 95 GLU 95 92 92 GLU GLU A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 THR 97 94 94 THR THR A . n A 1 98 THR 98 95 95 THR THR A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 GLU 100 97 97 GLU GLU A . n A 1 101 SER 101 98 98 SER SER A . n A 1 102 GLY 102 99 99 GLY GLY A . n A 1 103 MSE 103 100 100 MSE MSE A . n A 1 104 VAL 104 101 101 VAL VAL A . n A 1 105 PRO 105 102 102 PRO PRO A . n A 1 106 ILE 106 103 103 ILE ILE A . n A 1 107 SER 107 104 104 SER SER A . n A 1 108 ILE 108 105 105 ILE ILE A . n A 1 109 PRO 109 106 106 PRO PRO A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 GLU 111 108 108 GLU GLU A . n A 1 112 ASP 112 109 109 ASP ASP A . n A 1 113 LEU 113 110 110 LEU LEU A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 GLU 115 112 112 GLU GLU A . n A 1 116 GLN 116 113 113 GLN GLN A . n A 1 117 TYR 117 114 114 TYR TYR A . n A 1 118 THR 118 115 115 THR THR A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 ARG 120 117 117 ARG ARG A . n A 1 121 TYR 121 118 118 TYR TYR A . n A 1 122 PHE 122 119 119 PHE PHE A . n A 1 123 LEU 123 120 120 LEU LEU A . n A 1 124 VAL 124 121 121 VAL VAL A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 LYS 126 123 123 LYS LYS A . n A 1 127 GLN 127 124 124 GLN GLN A . n A 1 128 PHE 128 125 ? ? ? A . n A 1 129 ARG 129 126 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 89 A MSE 86 ? MET SELENOMETHIONINE 3 A MSE 103 A MSE 100 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 223 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELX phasing . ? 6 MLPHARE phasing . ? 7 RESOLVE phasing . ? 8 ARP/wARP 'model building' . ? 9 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 16 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 284 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.03 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 179 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 290 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_554 _pdbx_validate_symm_contact.dist 2.06 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 58 ? B OE1 A GLU 58 ? B 1.319 1.252 0.067 0.011 N 2 1 CD A GLU 58 ? B OE2 A GLU 58 ? B 1.323 1.252 0.071 0.011 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 117 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 117 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 117 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.05 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -4.25 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A PHE 125 ? A PHE 128 4 1 Y 1 A ARG 126 ? A ARG 129 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 127 1 HOH HOH A . B 2 HOH 2 128 2 HOH HOH A . B 2 HOH 3 129 3 HOH HOH A . B 2 HOH 4 130 4 HOH HOH A . B 2 HOH 5 131 5 HOH HOH A . B 2 HOH 6 132 6 HOH HOH A . B 2 HOH 7 133 7 HOH HOH A . B 2 HOH 8 134 8 HOH HOH A . B 2 HOH 9 135 9 HOH HOH A . B 2 HOH 10 136 10 HOH HOH A . B 2 HOH 11 137 11 HOH HOH A . B 2 HOH 12 138 12 HOH HOH A . B 2 HOH 13 139 13 HOH HOH A . B 2 HOH 14 140 14 HOH HOH A . B 2 HOH 15 141 15 HOH HOH A . B 2 HOH 16 142 16 HOH HOH A . B 2 HOH 17 143 17 HOH HOH A . B 2 HOH 18 144 18 HOH HOH A . B 2 HOH 19 145 19 HOH HOH A . B 2 HOH 20 146 20 HOH HOH A . B 2 HOH 21 147 21 HOH HOH A . B 2 HOH 22 148 22 HOH HOH A . B 2 HOH 23 149 23 HOH HOH A . B 2 HOH 24 150 24 HOH HOH A . B 2 HOH 25 151 25 HOH HOH A . B 2 HOH 26 152 26 HOH HOH A . B 2 HOH 27 153 27 HOH HOH A . B 2 HOH 28 154 28 HOH HOH A . B 2 HOH 29 155 29 HOH HOH A . B 2 HOH 30 156 30 HOH HOH A . B 2 HOH 31 157 31 HOH HOH A . B 2 HOH 32 158 32 HOH HOH A . B 2 HOH 33 159 33 HOH HOH A . B 2 HOH 34 160 34 HOH HOH A . B 2 HOH 35 161 35 HOH HOH A . B 2 HOH 36 162 36 HOH HOH A . B 2 HOH 37 163 37 HOH HOH A . B 2 HOH 38 164 38 HOH HOH A . B 2 HOH 39 165 39 HOH HOH A . B 2 HOH 40 166 40 HOH HOH A . B 2 HOH 41 167 41 HOH HOH A . B 2 HOH 42 168 42 HOH HOH A . B 2 HOH 43 169 43 HOH HOH A . B 2 HOH 44 170 44 HOH HOH A . B 2 HOH 45 171 45 HOH HOH A . B 2 HOH 46 172 46 HOH HOH A . B 2 HOH 47 173 47 HOH HOH A . B 2 HOH 48 174 48 HOH HOH A . B 2 HOH 49 175 49 HOH HOH A . B 2 HOH 50 176 50 HOH HOH A . B 2 HOH 51 177 51 HOH HOH A . B 2 HOH 52 178 52 HOH HOH A . B 2 HOH 53 179 53 HOH HOH A . B 2 HOH 54 180 54 HOH HOH A . B 2 HOH 55 181 55 HOH HOH A . B 2 HOH 56 182 56 HOH HOH A . B 2 HOH 57 183 57 HOH HOH A . B 2 HOH 58 184 58 HOH HOH A . B 2 HOH 59 185 59 HOH HOH A . B 2 HOH 60 186 60 HOH HOH A . B 2 HOH 61 187 61 HOH HOH A . B 2 HOH 62 188 62 HOH HOH A . B 2 HOH 63 189 63 HOH HOH A . B 2 HOH 64 190 64 HOH HOH A . B 2 HOH 65 191 65 HOH HOH A . B 2 HOH 66 192 66 HOH HOH A . B 2 HOH 67 193 67 HOH HOH A . B 2 HOH 68 194 68 HOH HOH A . B 2 HOH 69 195 69 HOH HOH A . B 2 HOH 70 196 70 HOH HOH A . B 2 HOH 71 197 71 HOH HOH A . B 2 HOH 72 198 72 HOH HOH A . B 2 HOH 73 199 73 HOH HOH A . B 2 HOH 74 200 74 HOH HOH A . B 2 HOH 75 201 75 HOH HOH A . B 2 HOH 76 202 76 HOH HOH A . B 2 HOH 77 203 77 HOH HOH A . B 2 HOH 78 204 78 HOH HOH A . B 2 HOH 79 205 79 HOH HOH A . B 2 HOH 80 206 80 HOH HOH A . B 2 HOH 81 207 81 HOH HOH A . B 2 HOH 82 208 82 HOH HOH A . B 2 HOH 83 209 83 HOH HOH A . B 2 HOH 84 210 84 HOH HOH A . B 2 HOH 85 211 85 HOH HOH A . B 2 HOH 86 212 86 HOH HOH A . B 2 HOH 87 213 87 HOH HOH A . B 2 HOH 88 214 88 HOH HOH A . B 2 HOH 89 215 89 HOH HOH A . B 2 HOH 90 216 90 HOH HOH A . B 2 HOH 91 217 91 HOH HOH A . B 2 HOH 92 218 92 HOH HOH A . B 2 HOH 93 219 93 HOH HOH A . B 2 HOH 94 220 94 HOH HOH A . B 2 HOH 95 221 95 HOH HOH A . B 2 HOH 96 222 96 HOH HOH A . B 2 HOH 97 223 97 HOH HOH A . B 2 HOH 98 224 98 HOH HOH A . B 2 HOH 99 225 99 HOH HOH A . B 2 HOH 100 226 100 HOH HOH A . B 2 HOH 101 227 101 HOH HOH A . B 2 HOH 102 228 102 HOH HOH A . B 2 HOH 103 229 103 HOH HOH A . B 2 HOH 104 230 104 HOH HOH A . B 2 HOH 105 231 105 HOH HOH A . B 2 HOH 106 232 106 HOH HOH A . B 2 HOH 107 233 107 HOH HOH A . B 2 HOH 108 234 108 HOH HOH A . B 2 HOH 109 235 109 HOH HOH A . B 2 HOH 110 236 110 HOH HOH A . B 2 HOH 111 237 111 HOH HOH A . B 2 HOH 112 238 112 HOH HOH A . B 2 HOH 113 239 113 HOH HOH A . B 2 HOH 114 240 114 HOH HOH A . B 2 HOH 115 241 115 HOH HOH A . B 2 HOH 116 242 116 HOH HOH A . B 2 HOH 117 243 117 HOH HOH A . B 2 HOH 118 244 118 HOH HOH A . B 2 HOH 119 245 119 HOH HOH A . B 2 HOH 120 246 120 HOH HOH A . B 2 HOH 121 247 121 HOH HOH A . B 2 HOH 122 248 122 HOH HOH A . B 2 HOH 123 249 123 HOH HOH A . B 2 HOH 124 250 124 HOH HOH A . B 2 HOH 125 251 125 HOH HOH A . B 2 HOH 126 252 126 HOH HOH A . B 2 HOH 127 253 127 HOH HOH A . B 2 HOH 128 254 128 HOH HOH A . B 2 HOH 129 255 129 HOH HOH A . B 2 HOH 130 256 130 HOH HOH A . B 2 HOH 131 257 131 HOH HOH A . B 2 HOH 132 258 132 HOH HOH A . B 2 HOH 133 259 133 HOH HOH A . B 2 HOH 134 260 134 HOH HOH A . B 2 HOH 135 261 135 HOH HOH A . B 2 HOH 136 262 136 HOH HOH A . B 2 HOH 137 263 137 HOH HOH A . B 2 HOH 138 264 138 HOH HOH A . B 2 HOH 139 265 139 HOH HOH A . B 2 HOH 140 266 140 HOH HOH A . B 2 HOH 141 267 141 HOH HOH A . B 2 HOH 142 268 142 HOH HOH A . B 2 HOH 143 269 143 HOH HOH A . B 2 HOH 144 270 144 HOH HOH A . B 2 HOH 145 271 145 HOH HOH A . B 2 HOH 146 272 146 HOH HOH A . B 2 HOH 147 273 147 HOH HOH A . B 2 HOH 148 274 148 HOH HOH A . B 2 HOH 149 275 149 HOH HOH A . B 2 HOH 150 276 150 HOH HOH A . B 2 HOH 151 277 151 HOH HOH A . B 2 HOH 152 278 152 HOH HOH A . B 2 HOH 153 279 153 HOH HOH A . B 2 HOH 154 280 154 HOH HOH A . B 2 HOH 155 281 155 HOH HOH A . B 2 HOH 156 282 156 HOH HOH A . B 2 HOH 157 283 157 HOH HOH A . B 2 HOH 158 284 158 HOH HOH A . B 2 HOH 159 285 159 HOH HOH A . B 2 HOH 160 286 160 HOH HOH A . B 2 HOH 161 287 161 HOH HOH A . B 2 HOH 162 288 162 HOH HOH A . B 2 HOH 163 289 163 HOH HOH A . B 2 HOH 164 290 164 HOH HOH A . B 2 HOH 165 291 165 HOH HOH A . B 2 HOH 166 292 166 HOH HOH A . B 2 HOH 167 293 167 HOH HOH A . B 2 HOH 168 294 168 HOH HOH A . B 2 HOH 169 295 169 HOH HOH A . B 2 HOH 170 296 170 HOH HOH A . B 2 HOH 171 297 171 HOH HOH A . B 2 HOH 172 298 172 HOH HOH A . B 2 HOH 173 299 173 HOH HOH A . #