data_3BBV # _entry.id 3BBV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BBV pdb_00003bbv 10.2210/pdb3bbv/pdb RCSB RCSB045330 ? ? WWPDB D_1000045330 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 4 'Structure model' 2 0 2019-07-03 5 'Structure model' 2 1 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Non-polymer description' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_image_scans 2 3 'Structure model' em_software 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' em_3d_fitting_list 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.image_processing_id' 2 4 'Structure model' '_chem_comp.formula' 3 4 'Structure model' '_chem_comp.formula_weight' 4 4 'Structure model' '_entity.formula_weight' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_em_3d_fitting_list.accession_code' 9 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 10 5 'Structure model' '_em_3d_fitting_list.source_name' 11 5 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.entry_id 3BBV _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-11-11 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2OW8 'p-site tRNA(PHE), chain z' unspecified PDB 3BBU . unspecified PDB 3BBX . unspecified EMDB EMD-1455 . 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, L.' 1 'Abrahams, J.P.' 2 # _citation.id primary _citation.title 'Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 386 _citation.page_first 1357 _citation.page_last 1367 _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19013177 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.10.079 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, L.' 1 ? primary 'Schaffitzel, C.' 2 ? primary 'Bingel-Erlenmeyer, R.' 3 ? primary 'Ban, N.' 4 ? primary 'Korber, P.' 5 ? primary 'Koning, R.I.' 6 ? primary 'de Geus, D.C.' 7 ? primary 'Plaisier, J.R.' 8 ? primary 'Abrahams, J.P.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'tRNA(Phe)' _entity.formula_weight 24649.912 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'part of the 50S ribosomal particle in assembly with Heat Shock Protein 15' # _entity_name_com.entity_id 1 _entity_name_com.name HSP15 # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCCCGGA(4SU)AGCUCAG(H2U)CGG(H2U)AGAGCAGGGGA(PSU)UGAA(MIA)A(PSU)CCCCGU(7MG)UCCUUG G(5MU)(PSU)CGAUUCCGAGUCCGGGCACCA ; _entity_poly.pdbx_seq_one_letter_code_can GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA _entity_poly.pdbx_strand_id z _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 A n 1 8 4SU n 1 9 A n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 H2U n 1 17 C n 1 18 G n 1 19 G n 1 20 H2U n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 A n 1 27 G n 1 28 G n 1 29 G n 1 30 G n 1 31 A n 1 32 PSU n 1 33 U n 1 34 G n 1 35 A n 1 36 A n 1 37 MIA n 1 38 A n 1 39 PSU n 1 40 C n 1 41 C n 1 42 C n 1 43 C n 1 44 G n 1 45 U n 1 46 7MG n 1 47 U n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 G n 1 53 G n 1 54 5MU n 1 55 PSU n 1 56 C n 1 57 G n 1 58 A n 1 59 U n 1 60 U n 1 61 C n 1 62 C n 1 63 G n 1 64 A n 1 65 G n 1 66 U n 1 67 C n 1 68 C n 1 69 G n 1 70 G n 1 71 G n 1 72 C n 1 73 A n 1 74 C n 1 75 C n 1 76 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4SU 'RNA linking' n "4-THIOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P S' 340.247 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 7MG 'RNA linking' n "7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H18 N5 O8 P' 379.263 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 MIA 'RNA linking' n "2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE" ? 'C16 H24 N5 O7 P S' 461.430 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G z . n A 1 2 C 2 2 2 C C z . n A 1 3 C 3 3 3 C C z . n A 1 4 C 4 4 4 C C z . n A 1 5 G 5 5 5 G G z . n A 1 6 G 6 6 6 G G z . n A 1 7 A 7 7 7 A A z . n A 1 8 4SU 8 8 8 4SU 4SU z . n A 1 9 A 9 9 9 A A z . n A 1 10 G 10 10 10 G G z . n A 1 11 C 11 11 11 C C z . n A 1 12 U 12 12 12 U U z . n A 1 13 C 13 13 13 C C z . n A 1 14 A 14 14 14 A A z . n A 1 15 G 15 15 15 G G z . n A 1 16 H2U 16 16 16 H2U H2U z . n A 1 17 C 17 17 17 C C z . n A 1 18 G 18 18 18 G G z . n A 1 19 G 19 19 19 G G z . n A 1 20 H2U 20 20 20 H2U H2U z . n A 1 21 A 21 21 21 A A z . n A 1 22 G 22 22 22 G G z . n A 1 23 A 23 23 23 A A z . n A 1 24 G 24 24 24 G G z . n A 1 25 C 25 25 25 C C z . n A 1 26 A 26 26 26 A A z . n A 1 27 G 27 27 27 G G z . n A 1 28 G 28 28 28 G G z . n A 1 29 G 29 29 29 G G z . n A 1 30 G 30 30 30 G G z . n A 1 31 A 31 31 31 A A z . n A 1 32 PSU 32 32 32 PSU PSU z . n A 1 33 U 33 33 33 U U z . n A 1 34 G 34 34 34 G G z . n A 1 35 A 35 35 35 A A z . n A 1 36 A 36 36 36 A A z . n A 1 37 MIA 37 37 37 MIA MIA z . n A 1 38 A 38 38 38 A A z . n A 1 39 PSU 39 39 39 PSU PSU z . n A 1 40 C 40 40 40 C C z . n A 1 41 C 41 41 41 C C z . n A 1 42 C 42 42 42 C C z . n A 1 43 C 43 43 43 C C z . n A 1 44 G 44 44 44 G G z . n A 1 45 U 45 45 45 U U z . n A 1 46 7MG 46 46 46 7MG 7MG z . n A 1 47 U 47 47 47 U U z . n A 1 48 C 48 48 48 C C z . n A 1 49 C 49 49 49 C C z . n A 1 50 U 50 50 50 U U z . n A 1 51 U 51 51 51 U U z . n A 1 52 G 52 52 52 G G z . n A 1 53 G 53 53 53 G G z . n A 1 54 5MU 54 54 54 5MU 5MU z . n A 1 55 PSU 55 55 55 PSU PSU z . n A 1 56 C 56 56 56 C C z . n A 1 57 G 57 57 57 G G z . n A 1 58 A 58 58 58 A A z . n A 1 59 U 59 59 59 U U z . n A 1 60 U 60 60 60 U U z . n A 1 61 C 61 61 61 C C z . n A 1 62 C 62 62 62 C C z . n A 1 63 G 63 63 63 G G z . n A 1 64 A 64 64 64 A A z . n A 1 65 G 65 65 65 G G z . n A 1 66 U 66 66 66 U U z . n A 1 67 C 67 67 67 C C z . n A 1 68 C 68 68 68 C C z . n A 1 69 G 69 69 69 G G z . n A 1 70 G 70 70 70 G G z . n A 1 71 G 71 71 71 G G z . n A 1 72 C 72 72 72 C C z . n A 1 73 A 73 73 73 A A z . n A 1 74 C 74 74 74 C C z . n A 1 75 C 75 75 75 C C z . n A 1 76 A 76 76 76 A A z . n # _exptl.entry_id 3BBV _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1628 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1628 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3BBV _struct.title 'The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BBV _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'PHE, tRNA, rescue stalled ribosome, RIBOSOME' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code PDB _struct_ref.pdbx_db_accession 3BBV _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;GCCCGGA(4SU)AGCUCAG(H2U)CGG(H2U)AGAGCAGGGGA(PSU)UGAA(MIA)A(PSU)CCCCGU(7MG)UCCUUG G(5MU)(PSU)CGAUUCCGAGUCCGGGCACCA ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BBV _struct_ref_seq.pdbx_strand_id z _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3BBV _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 7 "O3'" ? ? ? 1_555 A 4SU 8 P ? ? z A 7 z 4SU 8 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale2 covale both ? A 4SU 8 "O3'" ? ? ? 1_555 A A 9 P ? ? z 4SU 8 z A 9 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale3 covale both ? A G 15 "O3'" ? ? ? 1_555 A H2U 16 P ? ? z G 15 z H2U 16 1_555 ? ? ? ? ? ? ? 1.633 ? ? covale4 covale both ? A H2U 16 "O3'" ? ? ? 1_555 A C 17 P ? ? z H2U 16 z C 17 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale5 covale both ? A G 19 "O3'" ? ? ? 1_555 A H2U 20 P ? ? z G 19 z H2U 20 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale6 covale both ? A H2U 20 "O3'" ? ? ? 1_555 A A 21 P ? ? z H2U 20 z A 21 1_555 ? ? ? ? ? ? ? 1.630 ? ? covale7 covale both ? A A 31 "O3'" ? ? ? 1_555 A PSU 32 P ? ? z A 31 z PSU 32 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale8 covale both ? A PSU 32 "O3'" ? ? ? 1_555 A U 33 P ? ? z PSU 32 z U 33 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale9 covale both ? A A 36 "O3'" ? ? ? 1_555 A MIA 37 P ? ? z A 36 z MIA 37 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale10 covale both ? A MIA 37 "O3'" ? ? ? 1_555 A A 38 P ? ? z MIA 37 z A 38 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale11 covale both ? A A 38 "O3'" ? ? ? 1_555 A PSU 39 P ? ? z A 38 z PSU 39 1_555 ? ? ? ? ? ? ? 1.641 ? ? covale12 covale both ? A PSU 39 "O3'" ? ? ? 1_555 A C 40 P ? ? z PSU 39 z C 40 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale13 covale both ? A U 45 "O3'" ? ? ? 1_555 A 7MG 46 P ? ? z U 45 z 7MG 46 1_555 ? ? ? ? ? ? ? 1.559 ? ? covale14 covale both ? A 7MG 46 "O3'" ? ? ? 1_555 A U 47 P ? ? z 7MG 46 z U 47 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale15 covale both ? A G 53 "O3'" ? ? ? 1_555 A 5MU 54 P ? ? z G 53 z 5MU 54 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale16 covale both ? A 5MU 54 "O3'" ? ? ? 1_555 A PSU 55 P ? ? z 5MU 54 z PSU 55 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale17 covale both ? A PSU 55 "O3'" ? ? ? 1_555 A C 56 P ? ? z PSU 55 z C 56 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 72 N3 ? ? z G 1 z C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 72 O2 ? ? z G 1 z C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 72 N4 ? ? z G 1 z C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 71 N1 ? ? z C 2 z G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 71 O6 ? ? z C 2 z G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 71 N2 ? ? z C 2 z G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 70 N1 ? ? z C 3 z G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 70 O6 ? ? z C 3 z G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 70 N2 ? ? z C 3 z G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 71 N1 ? ? z C 3 z G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 71 O6 ? ? z C 3 z G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 71 N2 ? ? z C 3 z G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 69 N1 ? ? z C 4 z G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 69 O6 ? ? z C 4 z G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 69 N2 ? ? z C 4 z G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 68 N3 ? ? z G 5 z C 68 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog17 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 67 N3 ? ? z G 6 z C 67 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog18 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 66 N3 ? ? z A 7 z U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 66 O4 ? ? z A 7 z U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A C 13 N3 ? ? z A 9 z C 13 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 24 O6 ? ? z G 10 z G 24 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 25 O2 ? ? z G 10 z C 25 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N1 ? ? z C 11 z G 24 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog24 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? z U 12 z A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? z U 12 z A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? z C 13 z G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? z C 13 z G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? z C 13 z G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 22 N7 ? ? ? 1_555 A 7MG 46 N2 ? ? z G 22 z 7MG 46 1_555 ? ? ? ? ? ? 'G-7MG MISPAIR' ? ? ? hydrog30 hydrog ? ? A A 26 N1 ? ? ? 1_555 A G 44 N1 ? ? z A 26 z G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A A 26 N6 ? ? ? 1_555 A G 44 O6 ? ? z A 26 z G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 43 N3 ? ? z G 27 z C 43 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog33 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 42 N3 ? ? z G 28 z C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 42 O2 ? ? z G 28 z C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 42 N4 ? ? z G 28 z C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 41 O2 ? ? z G 29 z C 41 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog37 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 40 N3 ? ? z G 30 z C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 40 O2 ? ? z G 30 z C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 40 N4 ? ? z G 30 z C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 31 N1 ? ? ? 1_555 A PSU 39 N3 ? ? z A 31 z PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog41 hydrog ? ? A A 31 N6 ? ? ? 1_555 A PSU 39 O2 ? ? z A 31 z PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog42 hydrog ? ? A PSU 32 O4 ? ? ? 1_555 A A 38 N6 ? ? z PSU 32 z A 38 1_555 ? ? ? ? ? ? 'PSU-A MISPAIR' ? ? ? hydrog43 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 65 O6 ? ? z C 49 z G 65 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog44 hydrog ? ? A U 50 N3 ? ? ? 1_555 A A 64 N1 ? ? z U 50 z A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 50 O4 ? ? ? 1_555 A A 64 N6 ? ? z U 50 z A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 51 N3 ? ? ? 1_555 A G 63 O6 ? ? z U 51 z G 63 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? A U 51 O2 ? ? ? 1_555 A G 63 N1 ? ? z U 51 z G 63 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 62 N3 ? ? z G 52 z C 62 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog49 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? z G 53 z C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? z G 53 z C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? z G 53 z C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A 5MU 54 N3 ? ? ? 1_555 A A 58 N7 ? ? z 5MU 54 z A 58 1_555 ? ? ? ? ? ? '5MU-A PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N2 z G 18 ? ? C5 z A 58 ? ? 0.39 2 1 N3 z G 19 ? ? C5 z G 57 ? ? 0.54 3 1 C2 z G 19 ? ? N7 z G 57 ? ? 0.62 4 1 C6 z G 19 ? ? O6 z G 57 ? ? 0.65 5 1 C5 z G 19 ? ? C6 z G 57 ? ? 0.78 6 1 C2 z G 18 ? ? C6 z A 58 ? ? 0.80 7 1 N3 z G 19 ? ? C4 z G 57 ? ? 0.81 8 1 C4 z G 19 ? ? C6 z G 57 ? ? 0.95 9 1 C5 z G 19 ? ? O6 z G 57 ? ? 0.98 10 1 N3 z G 18 ? ? C2 z A 58 ? ? 1.01 11 1 C2 z G 19 ? ? C5 z G 57 ? ? 1.01 12 1 N9 z G 19 ? ? C2 z G 57 ? ? 1.02 13 1 N2 z G 18 ? ? C6 z A 58 ? ? 1.09 14 1 C2 z G 18 ? ? N1 z A 58 ? ? 1.10 15 1 N2 z G 19 ? ? N7 z G 57 ? ? 1.11 16 1 "O4'" z G 19 ? ? N2 z G 57 ? ? 1.12 17 1 N1 z G 18 ? ? N6 z A 58 ? ? 1.16 18 1 N2 z G 19 ? ? C8 z G 57 ? ? 1.17 19 1 N6 z A 9 ? ? O6 z G 22 ? ? 1.17 20 1 OP1 z G 19 ? ? O4 z U 60 ? ? 1.19 21 1 N3 z G 18 ? ? N1 z A 58 ? ? 1.19 22 1 N9 z G 19 ? ? N1 z G 57 ? ? 1.21 23 1 C4 z G 19 ? ? C5 z G 57 ? ? 1.28 24 1 C4 z G 19 ? ? N1 z G 57 ? ? 1.29 25 1 "C1'" z G 19 ? ? C2 z G 57 ? ? 1.34 26 1 N1 z G 18 ? ? C6 z A 58 ? ? 1.37 27 1 "C1'" z G 19 ? ? N3 z G 57 ? ? 1.38 28 1 C8 z G 19 ? ? N1 z G 57 ? ? 1.49 29 1 O6 z G 19 ? ? O6 z G 57 ? ? 1.49 30 1 C5 z G 19 ? ? N1 z G 57 ? ? 1.51 31 1 C6 z G 19 ? ? C6 z G 57 ? ? 1.52 32 1 N2 z G 18 ? ? N7 z A 58 ? ? 1.57 33 1 N1 z G 19 ? ? N7 z G 57 ? ? 1.61 34 1 N2 z G 18 ? ? C4 z A 58 ? ? 1.62 35 1 C2 z G 18 ? ? C5 z A 58 ? ? 1.63 36 1 "O4'" z G 19 ? ? C2 z G 57 ? ? 1.63 37 1 N3 z G 19 ? ? N7 z G 57 ? ? 1.64 38 1 C2 z G 19 ? ? C8 z G 57 ? ? 1.66 39 1 N7 z G 19 ? ? N1 z G 57 ? ? 1.66 40 1 C4 z G 19 ? ? C4 z G 57 ? ? 1.70 41 1 N3 z G 19 ? ? N9 z G 57 ? ? 1.71 42 1 "C1'" z G 19 ? ? N2 z G 57 ? ? 1.74 43 1 C4 z G 18 ? ? N1 z A 58 ? ? 1.76 44 1 N1 z G 18 ? ? N1 z A 58 ? ? 1.77 45 1 N3 z G 19 ? ? C6 z G 57 ? ? 1.78 46 1 N9 z G 19 ? ? N3 z G 57 ? ? 1.79 47 1 N3 z G 18 ? ? N3 z A 58 ? ? 1.79 48 1 N1 z G 19 ? ? C5 z G 57 ? ? 1.82 49 1 C4 z G 19 ? ? C2 z G 57 ? ? 1.82 50 1 C4 z G 18 ? ? C2 z A 58 ? ? 1.84 51 1 C2 z G 18 ? ? N6 z A 58 ? ? 1.86 52 1 "O2'" z G 18 ? ? O4 z U 60 ? ? 1.87 53 1 N1 z G 19 ? ? O6 z G 57 ? ? 1.88 54 1 "C4'" z G 19 ? ? N2 z G 57 ? ? 1.91 55 1 N6 z A 9 ? ? C6 z G 22 ? ? 1.92 56 1 "O4'" z G 19 ? ? N3 z G 57 ? ? 1.93 57 1 C2 z G 18 ? ? C2 z A 58 ? ? 1.93 58 1 N1 z A 31 ? ? O2 z PSU 39 ? ? 1.96 59 1 N9 z G 19 ? ? N2 z G 57 ? ? 1.97 60 1 C8 z G 19 ? ? C2 z G 57 ? ? 1.98 61 1 N1 z G 19 ? ? C6 z G 57 ? ? 2.01 62 1 "O2'" z A 58 ? ? OP2 z U 60 ? ? 2.01 63 1 C6 z A 9 ? ? O6 z G 22 ? ? 2.01 64 1 N7 z A 9 ? ? N4 z C 13 ? ? 2.01 65 1 N3 z G 19 ? ? C8 z G 57 ? ? 2.02 66 1 N2 z G 52 ? ? O2 z C 62 ? ? 2.02 67 1 N3 z G 18 ? ? C6 z A 58 ? ? 2.03 68 1 N3 z G 19 ? ? N3 z G 57 ? ? 2.03 69 1 C4 z G 19 ? ? N3 z G 57 ? ? 2.04 70 1 C2 z G 19 ? ? C4 z G 57 ? ? 2.04 71 1 N7 z G 19 ? ? C6 z G 57 ? ? 2.05 72 1 N7 z G 19 ? ? O6 z G 57 ? ? 2.05 73 1 N2 z G 18 ? ? N6 z A 58 ? ? 2.05 74 1 C5 z G 19 ? ? C5 z G 57 ? ? 2.07 75 1 C4 z G 19 ? ? O6 z G 57 ? ? 2.09 76 1 N9 z G 19 ? ? C6 z G 57 ? ? 2.11 77 1 C2 z G 19 ? ? C6 z G 57 ? ? 2.13 78 1 N2 z G 18 ? ? N1 z A 58 ? ? 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" z G 1 ? ? "C1'" z G 1 ? ? 1.462 1.526 -0.064 0.008 N 2 1 C5 z G 5 ? ? N7 z G 5 ? ? 1.346 1.388 -0.042 0.006 N 3 1 N9 z G 5 ? ? C4 z G 5 ? ? 1.323 1.375 -0.052 0.008 N 4 1 N3 z G 10 ? ? C4 z G 10 ? ? 1.395 1.350 0.045 0.007 N 5 1 C8 z G 10 ? ? N9 z G 10 ? ? 1.426 1.374 0.052 0.007 N 6 1 C2 z U 12 ? ? N3 z U 12 ? ? 1.428 1.373 0.055 0.007 N 7 1 "C2'" z C 13 ? ? "C1'" z C 13 ? ? 1.476 1.526 -0.050 0.008 N 8 1 N1 z C 13 ? ? C2 z C 13 ? ? 1.459 1.397 0.062 0.010 N 9 1 N3 z G 15 ? ? C4 z G 15 ? ? 1.393 1.350 0.043 0.007 N 10 1 "C5'" z G 18 ? ? "C4'" z G 18 ? ? 1.464 1.508 -0.044 0.007 N 11 1 C4 z G 19 ? ? C5 z G 19 ? ? 1.333 1.379 -0.046 0.007 N 12 1 C5 z A 21 ? ? N7 z A 21 ? ? 1.428 1.388 0.040 0.006 N 13 1 C4 z G 24 ? ? C5 z G 24 ? ? 1.422 1.379 0.043 0.007 N 14 1 C8 z G 24 ? ? N9 z G 24 ? ? 1.423 1.374 0.049 0.007 N 15 1 C2 z C 25 ? ? N3 z C 25 ? ? 1.403 1.353 0.050 0.008 N 16 1 "C2'" z A 26 ? ? "C1'" z A 26 ? ? 1.477 1.526 -0.049 0.008 N 17 1 C5 z A 26 ? ? C6 z A 26 ? ? 1.492 1.406 0.086 0.009 N 18 1 C5 z A 26 ? ? N7 z A 26 ? ? 1.436 1.388 0.048 0.006 N 19 1 N9 z A 26 ? ? C4 z A 26 ? ? 1.422 1.374 0.048 0.006 N 20 1 N3 z G 28 ? ? C4 z G 28 ? ? 1.398 1.350 0.048 0.007 N 21 1 C6 z G 28 ? ? N1 z G 28 ? ? 1.437 1.391 0.046 0.007 N 22 1 C5 z G 28 ? ? N7 z G 28 ? ? 1.427 1.388 0.039 0.006 N 23 1 C8 z G 28 ? ? N9 z G 28 ? ? 1.416 1.374 0.042 0.007 N 24 1 "C4'" z U 33 ? ? "C3'" z U 33 ? ? 1.447 1.521 -0.074 0.010 N 25 1 C2 z U 33 ? ? N3 z U 33 ? ? 1.416 1.373 0.043 0.007 N 26 1 "O3'" z U 47 ? ? P z C 48 ? ? 1.757 1.607 0.150 0.012 Y 27 1 C2 z U 50 ? ? N3 z U 50 ? ? 1.323 1.373 -0.050 0.007 N 28 1 N3 z G 52 ? ? C4 z G 52 ? ? 1.308 1.350 -0.042 0.007 N 29 1 C5 z G 52 ? ? N7 z G 52 ? ? 1.346 1.388 -0.042 0.006 N 30 1 N3 z G 53 ? ? C4 z G 53 ? ? 1.300 1.350 -0.050 0.007 N 31 1 C6 z G 53 ? ? N1 z G 53 ? ? 1.349 1.391 -0.042 0.007 N 32 1 C8 z G 53 ? ? N9 z G 53 ? ? 1.328 1.374 -0.046 0.007 N 33 1 N1 z C 56 ? ? C6 z C 56 ? ? 1.330 1.367 -0.037 0.006 N 34 1 P z G 57 ? ? "O5'" z G 57 ? ? 1.655 1.593 0.062 0.010 N 35 1 C5 z G 57 ? ? N7 z G 57 ? ? 1.428 1.388 0.040 0.006 N 36 1 N7 z G 57 ? ? C8 z G 57 ? ? 1.266 1.305 -0.039 0.006 N 37 1 P z U 59 ? ? "O5'" z U 59 ? ? 1.660 1.593 0.067 0.010 N 38 1 C5 z A 64 ? ? N7 z A 64 ? ? 1.347 1.388 -0.041 0.006 N 39 1 C5 z G 65 ? ? N7 z G 65 ? ? 1.344 1.388 -0.044 0.006 N 40 1 C5 z G 69 ? ? N7 z G 69 ? ? 1.352 1.388 -0.036 0.006 N 41 1 C5 z A 73 ? ? N7 z A 73 ? ? 1.425 1.388 0.037 0.006 N 42 1 "C5'" z C 74 ? ? "C4'" z C 74 ? ? 1.463 1.508 -0.045 0.007 N 43 1 P z C 75 ? ? "O5'" z C 75 ? ? 1.526 1.593 -0.067 0.010 N 44 1 C5 z A 76 ? ? C6 z A 76 ? ? 1.463 1.406 0.057 0.009 N 45 1 N9 z A 76 ? ? C4 z A 76 ? ? 1.411 1.374 0.037 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 z G 1 ? ? C5 z G 1 ? ? N7 z G 1 ? ? 108.33 110.80 -2.47 0.40 N 2 1 N9 z G 1 ? ? C4 z G 1 ? ? C5 z G 1 ? ? 108.41 105.40 3.01 0.40 N 3 1 "C2'" z A 7 ? ? "C3'" z A 7 ? ? "O3'" z A 7 ? ? 125.12 113.70 11.42 1.60 N 4 1 "C3'" z A 31 ? ? "C2'" z A 31 ? ? "C1'" z A 31 ? ? 94.65 101.30 -6.65 0.70 N 5 1 "C3'" z A 31 ? ? "O3'" z A 31 ? ? P z PSU 32 ? ? 110.38 119.70 -9.32 1.20 Y 6 1 "O3'" z A 36 ? ? P z MIA 37 ? ? "O5'" z MIA 37 ? ? 89.91 104.00 -14.09 1.90 Y 7 1 "C3'" z C 41 ? ? "C2'" z C 41 ? ? "C1'" z C 41 ? ? 95.78 101.30 -5.52 0.70 N 8 1 "C3'" z U 45 ? ? "C2'" z U 45 ? ? "C1'" z U 45 ? ? 96.94 101.30 -4.36 0.70 N 9 1 "C3'" z U 45 ? ? "O3'" z U 45 ? ? P z 7MG 46 ? ? 112.28 119.70 -7.42 1.20 Y 10 1 "C3'" z C 48 ? ? "C2'" z C 48 ? ? "C1'" z C 48 ? ? 106.40 101.50 4.90 0.80 N 11 1 N1 z C 49 ? ? C2 z C 49 ? ? O2 z C 49 ? ? 122.67 118.90 3.77 0.60 N 12 1 C8 z G 52 ? ? N9 z G 52 ? ? C4 z G 52 ? ? 103.88 106.40 -2.52 0.40 N 13 1 N9 z G 52 ? ? C4 z G 52 ? ? C5 z G 52 ? ? 108.13 105.40 2.73 0.40 N 14 1 C4 z G 53 ? ? C5 z G 53 ? ? N7 z G 53 ? ? 108.04 110.80 -2.76 0.40 N 15 1 N9 z G 53 ? ? C4 z G 53 ? ? C5 z G 53 ? ? 108.02 105.40 2.62 0.40 N 16 1 C2 z G 57 ? ? N3 z G 57 ? ? C4 z G 57 ? ? 115.13 111.90 3.23 0.50 N 17 1 C5 z G 57 ? ? C6 z G 57 ? ? N1 z G 57 ? ? 115.02 111.50 3.52 0.50 N 18 1 C8 z G 57 ? ? N9 z G 57 ? ? C4 z G 57 ? ? 109.51 106.40 3.11 0.40 N 19 1 N9 z G 57 ? ? C4 z G 57 ? ? C5 z G 57 ? ? 102.78 105.40 -2.62 0.40 N 20 1 C6 z C 61 ? ? N1 z C 61 ? ? C2 z C 61 ? ? 123.30 120.30 3.00 0.40 N 21 1 N3 z C 61 ? ? C4 z C 61 ? ? C5 z C 61 ? ? 124.57 121.90 2.67 0.40 N 22 1 C6 z C 67 ? ? N1 z C 67 ? ? C2 z C 67 ? ? 123.22 120.30 2.92 0.40 N 23 1 C8 z G 69 ? ? N9 z G 69 ? ? C4 z G 69 ? ? 103.97 106.40 -2.43 0.40 N 24 1 N9 z G 70 ? ? C4 z G 70 ? ? C5 z G 70 ? ? 107.87 105.40 2.47 0.40 N 25 1 C4 z G 71 ? ? C5 z G 71 ? ? N7 z G 71 ? ? 108.10 110.80 -2.70 0.40 N 26 1 C6 z C 74 ? ? N1 z C 74 ? ? C2 z C 74 ? ? 117.34 120.30 -2.96 0.40 N 27 1 N3 z C 74 ? ? C4 z C 74 ? ? C5 z C 74 ? ? 118.84 121.90 -3.06 0.40 N 28 1 C4 z C 75 ? ? C5 z C 75 ? ? C6 z C 75 ? ? 120.51 117.40 3.11 0.50 N 29 1 C4 z A 76 ? ? C5 z A 76 ? ? N7 z A 76 ? ? 107.22 110.70 -3.48 0.50 N 30 1 N9 z A 76 ? ? C4 z A 76 ? ? C5 z A 76 ? ? 108.72 105.80 2.92 0.40 N # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 "O3'" z A 9 ? ? P z G 10 ? ? 2.29 2 1 "O3'" z U 47 ? ? P z C 48 ? ? 1.76 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 4SU 8 z 4SU 8 ? U "4-THIOURIDINE-5'-MONOPHOSPHATE" 2 A H2U 16 z H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 3 A H2U 20 z H2U 20 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 4 A PSU 32 z PSU 32 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 5 A MIA 37 z MIA 37 ? A ? 6 A PSU 39 z PSU 39 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 7 A 7MG 46 z 7MG 46 ? G ? 8 A 5MU 54 z 5MU 54 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 9 A PSU 55 z PSU 55 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3BBV _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'best visual fit, best correlation value' _em_3d_fitting.details 'METHOD--colores REFINEMENT PROTOCOL--multi-rigid body refinement' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 2OW8 _em_3d_fitting_list.pdb_chain_id z _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 2OW8 # _em_3d_reconstruction.entry_id 3BBV _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'cross-common lines, projection matching' _em_3d_reconstruction.nominal_pixel_size 2.54 _em_3d_reconstruction.actual_pixel_size 2.54 _em_3d_reconstruction.resolution 10 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details 'EMAN software' _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.algorithm ? # _em_entity_assembly.id 1 _em_entity_assembly.name '0S.nc-tRNA.Hsp15 complex' _em_entity_assembly.parent_id 0 _em_entity_assembly.source . _em_entity_assembly.type COMPLEX _em_entity_assembly.details ? _em_entity_assembly.entity_id_list ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3BBV _em_imaging.id 1 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.illumination_mode OTHER _em_imaging.specimen_id 1 _em_imaging.date ? _em_imaging.temperature ? _em_imaging.nominal_defocus_min 1.5 _em_imaging.nominal_defocus_max 3.5 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.0 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_vitrification.entry_id 3BBV _em_vitrification.id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.humidity ? _em_vitrification.chamber_temperature ? _em_vitrification.details ? _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3BBV _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 3BBV _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4SU N1 N N N 1 4SU C2 C N N 2 4SU N3 N N N 3 4SU C4 C N N 4 4SU C5 C N N 5 4SU C6 C N N 6 4SU O2 O N N 7 4SU S4 S N N 8 4SU "C1'" C N R 9 4SU "C2'" C N R 10 4SU "O2'" O N N 11 4SU "C3'" C N S 12 4SU "C4'" C N R 13 4SU "O3'" O N N 14 4SU "O4'" O N N 15 4SU "C5'" C N N 16 4SU "O5'" O N N 17 4SU P P N N 18 4SU OP1 O N N 19 4SU OP2 O N N 20 4SU OP3 O N N 21 4SU HN3 H N N 22 4SU H5 H N N 23 4SU H6 H N N 24 4SU "H1'" H N N 25 4SU "H2'" H N N 26 4SU "HO2'" H N N 27 4SU "H3'" H N N 28 4SU "H4'" H N N 29 4SU "HO3'" H N N 30 4SU "H5'" H N N 31 4SU "H5''" H N N 32 4SU HOP2 H N N 33 4SU HOP3 H N N 34 5MU N1 N N N 35 5MU C2 C N N 36 5MU N3 N N N 37 5MU C4 C N N 38 5MU C5 C N N 39 5MU C5M C N N 40 5MU C6 C N N 41 5MU O2 O N N 42 5MU O4 O N N 43 5MU "C1'" C N R 44 5MU "C2'" C N R 45 5MU "O2'" O N N 46 5MU "C3'" C N S 47 5MU "C4'" C N R 48 5MU "O3'" O N N 49 5MU "O4'" O N N 50 5MU "C5'" C N N 51 5MU "O5'" O N N 52 5MU P P N N 53 5MU OP1 O N N 54 5MU OP2 O N N 55 5MU OP3 O N N 56 5MU HN3 H N N 57 5MU H71 H N N 58 5MU H72 H N N 59 5MU H73 H N N 60 5MU H6 H N N 61 5MU "H1'" H N N 62 5MU "H2'" H N N 63 5MU "HO2'" H N N 64 5MU "H3'" H N N 65 5MU "H4'" H N N 66 5MU "HO3'" H N N 67 5MU "H5'" H N N 68 5MU "H5''" H N N 69 5MU HOP2 H N N 70 5MU HOP3 H N N 71 7MG P P N N 72 7MG OP1 O N N 73 7MG OP2 O N N 74 7MG OP3 O N N 75 7MG "O5'" O N N 76 7MG "C5'" C N N 77 7MG "C4'" C N R 78 7MG "O4'" O N N 79 7MG "C3'" C N S 80 7MG "O3'" O N N 81 7MG "C2'" C N R 82 7MG "O2'" O N N 83 7MG "C1'" C N R 84 7MG N9 N N N 85 7MG C8 C N N 86 7MG N7 N N N 87 7MG C5 C N N 88 7MG C6 C N N 89 7MG O6 O N N 90 7MG N1 N N N 91 7MG C2 C N N 92 7MG N2 N N N 93 7MG N3 N N N 94 7MG C4 C N N 95 7MG CM7 C N N 96 7MG HOP2 H N N 97 7MG HOP3 H N N 98 7MG "H5'" H N N 99 7MG "H5''" H N N 100 7MG "H4'" H N N 101 7MG "H3'" H N N 102 7MG "HO3'" H N N 103 7MG "H2'" H N N 104 7MG "HO2'" H N N 105 7MG "H1'" H N N 106 7MG H81 H N N 107 7MG H82 H N N 108 7MG HN1 H N N 109 7MG HN21 H N N 110 7MG HN22 H N N 111 7MG HM71 H N N 112 7MG HM72 H N N 113 7MG HM73 H N N 114 A OP3 O N N 115 A P P N N 116 A OP1 O N N 117 A OP2 O N N 118 A "O5'" O N N 119 A "C5'" C N N 120 A "C4'" C N R 121 A "O4'" O N N 122 A "C3'" C N S 123 A "O3'" O N N 124 A "C2'" C N R 125 A "O2'" O N N 126 A "C1'" C N R 127 A N9 N Y N 128 A C8 C Y N 129 A N7 N Y N 130 A C5 C Y N 131 A C6 C Y N 132 A N6 N N N 133 A N1 N Y N 134 A C2 C Y N 135 A N3 N Y N 136 A C4 C Y N 137 A HOP3 H N N 138 A HOP2 H N N 139 A "H5'" H N N 140 A "H5''" H N N 141 A "H4'" H N N 142 A "H3'" H N N 143 A "HO3'" H N N 144 A "H2'" H N N 145 A "HO2'" H N N 146 A "H1'" H N N 147 A H8 H N N 148 A H61 H N N 149 A H62 H N N 150 A H2 H N N 151 C OP3 O N N 152 C P P N N 153 C OP1 O N N 154 C OP2 O N N 155 C "O5'" O N N 156 C "C5'" C N N 157 C "C4'" C N R 158 C "O4'" O N N 159 C "C3'" C N S 160 C "O3'" O N N 161 C "C2'" C N R 162 C "O2'" O N N 163 C "C1'" C N R 164 C N1 N N N 165 C C2 C N N 166 C O2 O N N 167 C N3 N N N 168 C C4 C N N 169 C N4 N N N 170 C C5 C N N 171 C C6 C N N 172 C HOP3 H N N 173 C HOP2 H N N 174 C "H5'" H N N 175 C "H5''" H N N 176 C "H4'" H N N 177 C "H3'" H N N 178 C "HO3'" H N N 179 C "H2'" H N N 180 C "HO2'" H N N 181 C "H1'" H N N 182 C H41 H N N 183 C H42 H N N 184 C H5 H N N 185 C H6 H N N 186 G OP3 O N N 187 G P P N N 188 G OP1 O N N 189 G OP2 O N N 190 G "O5'" O N N 191 G "C5'" C N N 192 G "C4'" C N R 193 G "O4'" O N N 194 G "C3'" C N S 195 G "O3'" O N N 196 G "C2'" C N R 197 G "O2'" O N N 198 G "C1'" C N R 199 G N9 N Y N 200 G C8 C Y N 201 G N7 N Y N 202 G C5 C Y N 203 G C6 C N N 204 G O6 O N N 205 G N1 N N N 206 G C2 C N N 207 G N2 N N N 208 G N3 N N N 209 G C4 C Y N 210 G HOP3 H N N 211 G HOP2 H N N 212 G "H5'" H N N 213 G "H5''" H N N 214 G "H4'" H N N 215 G "H3'" H N N 216 G "HO3'" H N N 217 G "H2'" H N N 218 G "HO2'" H N N 219 G "H1'" H N N 220 G H8 H N N 221 G H1 H N N 222 G H21 H N N 223 G H22 H N N 224 H2U P P N N 225 H2U OP1 O N N 226 H2U OP2 O N N 227 H2U OP3 O N N 228 H2U "O5'" O N N 229 H2U "C5'" C N N 230 H2U "C4'" C N R 231 H2U "O4'" O N N 232 H2U "C3'" C N S 233 H2U "O3'" O N N 234 H2U "C1'" C N R 235 H2U "C2'" C N R 236 H2U "O2'" O N N 237 H2U N1 N N N 238 H2U C2 C N N 239 H2U O2 O N N 240 H2U N3 N N N 241 H2U C4 C N N 242 H2U O4 O N N 243 H2U C5 C N N 244 H2U C6 C N N 245 H2U HOP2 H N N 246 H2U HOP3 H N N 247 H2U "H5'" H N N 248 H2U "H5''" H N N 249 H2U "H4'" H N N 250 H2U "H3'" H N N 251 H2U "HO3'" H N N 252 H2U "H1'" H N N 253 H2U "H2'" H N N 254 H2U "HO2'" H N N 255 H2U HN3 H N N 256 H2U H51 H N N 257 H2U H52 H N N 258 H2U H61 H N N 259 H2U H62 H N N 260 MIA OP3 O N N 261 MIA P P N N 262 MIA OP1 O N N 263 MIA OP2 O N N 264 MIA "O5'" O N N 265 MIA "C5'" C N N 266 MIA "C4'" C N R 267 MIA "O4'" O N N 268 MIA "C3'" C N S 269 MIA "O3'" O N N 270 MIA "C2'" C N R 271 MIA "O2'" O N N 272 MIA "C1'" C N R 273 MIA N9 N Y N 274 MIA C8 C Y N 275 MIA N7 N Y N 276 MIA C5 C Y N 277 MIA C6 C Y N 278 MIA N6 N N N 279 MIA N1 N Y N 280 MIA C2 C Y N 281 MIA N3 N Y N 282 MIA C4 C Y N 283 MIA S10 S N N 284 MIA C11 C N N 285 MIA C12 C N N 286 MIA C13 C N N 287 MIA C14 C N N 288 MIA C15 C N N 289 MIA C16 C N N 290 MIA HOP3 H N N 291 MIA HOP2 H N N 292 MIA "H5'" H N N 293 MIA "H5''" H N N 294 MIA "H4'" H N N 295 MIA "H3'" H N N 296 MIA "HO3'" H N N 297 MIA "H2'" H N N 298 MIA "HO2'" H N N 299 MIA "H1'" H N N 300 MIA H8 H N N 301 MIA HN6 H N N 302 MIA H111 H N N 303 MIA H112 H N N 304 MIA H113 H N N 305 MIA H121 H N N 306 MIA H122 H N N 307 MIA H131 H N N 308 MIA H151 H N N 309 MIA H152 H N N 310 MIA H153 H N N 311 MIA H161 H N N 312 MIA H162 H N N 313 MIA H163 H N N 314 PSU N1 N N N 315 PSU C2 C N N 316 PSU N3 N N N 317 PSU C4 C N N 318 PSU C5 C N N 319 PSU C6 C N N 320 PSU O2 O N N 321 PSU O4 O N N 322 PSU "C1'" C N S 323 PSU "C2'" C N R 324 PSU "O2'" O N N 325 PSU "C3'" C N S 326 PSU "C4'" C N R 327 PSU "O3'" O N N 328 PSU "O4'" O N N 329 PSU "C5'" C N N 330 PSU "O5'" O N N 331 PSU P P N N 332 PSU OP1 O N N 333 PSU OP2 O N N 334 PSU OP3 O N N 335 PSU HN1 H N N 336 PSU HN3 H N N 337 PSU H6 H N N 338 PSU "H1'" H N N 339 PSU "H2'" H N N 340 PSU "HO2'" H N N 341 PSU "H3'" H N N 342 PSU "H4'" H N N 343 PSU "HO3'" H N N 344 PSU "H5'" H N N 345 PSU "H5''" H N N 346 PSU HOP2 H N N 347 PSU HOP3 H N N 348 U OP3 O N N 349 U P P N N 350 U OP1 O N N 351 U OP2 O N N 352 U "O5'" O N N 353 U "C5'" C N N 354 U "C4'" C N R 355 U "O4'" O N N 356 U "C3'" C N S 357 U "O3'" O N N 358 U "C2'" C N R 359 U "O2'" O N N 360 U "C1'" C N R 361 U N1 N N N 362 U C2 C N N 363 U O2 O N N 364 U N3 N N N 365 U C4 C N N 366 U O4 O N N 367 U C5 C N N 368 U C6 C N N 369 U HOP3 H N N 370 U HOP2 H N N 371 U "H5'" H N N 372 U "H5''" H N N 373 U "H4'" H N N 374 U "H3'" H N N 375 U "HO3'" H N N 376 U "H2'" H N N 377 U "HO2'" H N N 378 U "H1'" H N N 379 U H3 H N N 380 U H5 H N N 381 U H6 H N N 382 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4SU N1 C2 sing N N 1 4SU N1 C6 sing N N 2 4SU N1 "C1'" sing N N 3 4SU C2 N3 sing N N 4 4SU C2 O2 doub N N 5 4SU N3 C4 sing N N 6 4SU N3 HN3 sing N N 7 4SU C4 C5 sing N N 8 4SU C4 S4 doub N N 9 4SU C5 C6 doub N N 10 4SU C5 H5 sing N N 11 4SU C6 H6 sing N N 12 4SU "C1'" "C2'" sing N N 13 4SU "C1'" "O4'" sing N N 14 4SU "C1'" "H1'" sing N N 15 4SU "C2'" "O2'" sing N N 16 4SU "C2'" "C3'" sing N N 17 4SU "C2'" "H2'" sing N N 18 4SU "O2'" "HO2'" sing N N 19 4SU "C3'" "C4'" sing N N 20 4SU "C3'" "O3'" sing N N 21 4SU "C3'" "H3'" sing N N 22 4SU "C4'" "O4'" sing N N 23 4SU "C4'" "C5'" sing N N 24 4SU "C4'" "H4'" sing N N 25 4SU "O3'" "HO3'" sing N N 26 4SU "C5'" "O5'" sing N N 27 4SU "C5'" "H5'" sing N N 28 4SU "C5'" "H5''" sing N N 29 4SU "O5'" P sing N N 30 4SU P OP1 doub N N 31 4SU P OP2 sing N N 32 4SU P OP3 sing N N 33 4SU OP2 HOP2 sing N N 34 4SU OP3 HOP3 sing N N 35 5MU N1 C2 sing N N 36 5MU N1 C6 sing N N 37 5MU N1 "C1'" sing N N 38 5MU C2 N3 sing N N 39 5MU C2 O2 doub N N 40 5MU N3 C4 sing N N 41 5MU N3 HN3 sing N N 42 5MU C4 C5 sing N N 43 5MU C4 O4 doub N N 44 5MU C5 C5M sing N N 45 5MU C5 C6 doub N N 46 5MU C5M H71 sing N N 47 5MU C5M H72 sing N N 48 5MU C5M H73 sing N N 49 5MU C6 H6 sing N N 50 5MU "C1'" "C2'" sing N N 51 5MU "C1'" "O4'" sing N N 52 5MU "C1'" "H1'" sing N N 53 5MU "C2'" "O2'" sing N N 54 5MU "C2'" "C3'" sing N N 55 5MU "C2'" "H2'" sing N N 56 5MU "O2'" "HO2'" sing N N 57 5MU "C3'" "C4'" sing N N 58 5MU "C3'" "O3'" sing N N 59 5MU "C3'" "H3'" sing N N 60 5MU "C4'" "O4'" sing N N 61 5MU "C4'" "C5'" sing N N 62 5MU "C4'" "H4'" sing N N 63 5MU "O3'" "HO3'" sing N N 64 5MU "C5'" "O5'" sing N N 65 5MU "C5'" "H5'" sing N N 66 5MU "C5'" "H5''" sing N N 67 5MU "O5'" P sing N N 68 5MU P OP1 doub N N 69 5MU P OP2 sing N N 70 5MU P OP3 sing N N 71 5MU OP2 HOP2 sing N N 72 5MU OP3 HOP3 sing N N 73 7MG P OP1 doub N N 74 7MG P OP2 sing N N 75 7MG P OP3 sing N N 76 7MG P "O5'" sing N N 77 7MG OP2 HOP2 sing N N 78 7MG OP3 HOP3 sing N N 79 7MG "O5'" "C5'" sing N N 80 7MG "C5'" "C4'" sing N N 81 7MG "C5'" "H5'" sing N N 82 7MG "C5'" "H5''" sing N N 83 7MG "C4'" "O4'" sing N N 84 7MG "C4'" "C3'" sing N N 85 7MG "C4'" "H4'" sing N N 86 7MG "O4'" "C1'" sing N N 87 7MG "C3'" "O3'" sing N N 88 7MG "C3'" "C2'" sing N N 89 7MG "C3'" "H3'" sing N N 90 7MG "O3'" "HO3'" sing N N 91 7MG "C2'" "O2'" sing N N 92 7MG "C2'" "C1'" sing N N 93 7MG "C2'" "H2'" sing N N 94 7MG "O2'" "HO2'" sing N N 95 7MG "C1'" N9 sing N N 96 7MG "C1'" "H1'" sing N N 97 7MG N9 C8 sing N N 98 7MG N9 C4 sing N N 99 7MG C8 N7 sing N N 100 7MG C8 H81 sing N N 101 7MG C8 H82 sing N N 102 7MG N7 C5 sing N N 103 7MG N7 CM7 sing N N 104 7MG C5 C6 sing N N 105 7MG C5 C4 doub N N 106 7MG C6 O6 doub N N 107 7MG C6 N1 sing N N 108 7MG N1 C2 sing N N 109 7MG N1 HN1 sing N N 110 7MG C2 N2 sing N N 111 7MG C2 N3 doub N N 112 7MG N2 HN21 sing N N 113 7MG N2 HN22 sing N N 114 7MG N3 C4 sing N N 115 7MG CM7 HM71 sing N N 116 7MG CM7 HM72 sing N N 117 7MG CM7 HM73 sing N N 118 A OP3 P sing N N 119 A OP3 HOP3 sing N N 120 A P OP1 doub N N 121 A P OP2 sing N N 122 A P "O5'" sing N N 123 A OP2 HOP2 sing N N 124 A "O5'" "C5'" sing N N 125 A "C5'" "C4'" sing N N 126 A "C5'" "H5'" sing N N 127 A "C5'" "H5''" sing N N 128 A "C4'" "O4'" sing N N 129 A "C4'" "C3'" sing N N 130 A "C4'" "H4'" sing N N 131 A "O4'" "C1'" sing N N 132 A "C3'" "O3'" sing N N 133 A "C3'" "C2'" sing N N 134 A "C3'" "H3'" sing N N 135 A "O3'" "HO3'" sing N N 136 A "C2'" "O2'" sing N N 137 A "C2'" "C1'" sing N N 138 A "C2'" "H2'" sing N N 139 A "O2'" "HO2'" sing N N 140 A "C1'" N9 sing N N 141 A "C1'" "H1'" sing N N 142 A N9 C8 sing Y N 143 A N9 C4 sing Y N 144 A C8 N7 doub Y N 145 A C8 H8 sing N N 146 A N7 C5 sing Y N 147 A C5 C6 sing Y N 148 A C5 C4 doub Y N 149 A C6 N6 sing N N 150 A C6 N1 doub Y N 151 A N6 H61 sing N N 152 A N6 H62 sing N N 153 A N1 C2 sing Y N 154 A C2 N3 doub Y N 155 A C2 H2 sing N N 156 A N3 C4 sing Y N 157 C OP3 P sing N N 158 C OP3 HOP3 sing N N 159 C P OP1 doub N N 160 C P OP2 sing N N 161 C P "O5'" sing N N 162 C OP2 HOP2 sing N N 163 C "O5'" "C5'" sing N N 164 C "C5'" "C4'" sing N N 165 C "C5'" "H5'" sing N N 166 C "C5'" "H5''" sing N N 167 C "C4'" "O4'" sing N N 168 C "C4'" "C3'" sing N N 169 C "C4'" "H4'" sing N N 170 C "O4'" "C1'" sing N N 171 C "C3'" "O3'" sing N N 172 C "C3'" "C2'" sing N N 173 C "C3'" "H3'" sing N N 174 C "O3'" "HO3'" sing N N 175 C "C2'" "O2'" sing N N 176 C "C2'" "C1'" sing N N 177 C "C2'" "H2'" sing N N 178 C "O2'" "HO2'" sing N N 179 C "C1'" N1 sing N N 180 C "C1'" "H1'" sing N N 181 C N1 C2 sing N N 182 C N1 C6 sing N N 183 C C2 O2 doub N N 184 C C2 N3 sing N N 185 C N3 C4 doub N N 186 C C4 N4 sing N N 187 C C4 C5 sing N N 188 C N4 H41 sing N N 189 C N4 H42 sing N N 190 C C5 C6 doub N N 191 C C5 H5 sing N N 192 C C6 H6 sing N N 193 G OP3 P sing N N 194 G OP3 HOP3 sing N N 195 G P OP1 doub N N 196 G P OP2 sing N N 197 G P "O5'" sing N N 198 G OP2 HOP2 sing N N 199 G "O5'" "C5'" sing N N 200 G "C5'" "C4'" sing N N 201 G "C5'" "H5'" sing N N 202 G "C5'" "H5''" sing N N 203 G "C4'" "O4'" sing N N 204 G "C4'" "C3'" sing N N 205 G "C4'" "H4'" sing N N 206 G "O4'" "C1'" sing N N 207 G "C3'" "O3'" sing N N 208 G "C3'" "C2'" sing N N 209 G "C3'" "H3'" sing N N 210 G "O3'" "HO3'" sing N N 211 G "C2'" "O2'" sing N N 212 G "C2'" "C1'" sing N N 213 G "C2'" "H2'" sing N N 214 G "O2'" "HO2'" sing N N 215 G "C1'" N9 sing N N 216 G "C1'" "H1'" sing N N 217 G N9 C8 sing Y N 218 G N9 C4 sing Y N 219 G C8 N7 doub Y N 220 G C8 H8 sing N N 221 G N7 C5 sing Y N 222 G C5 C6 sing N N 223 G C5 C4 doub Y N 224 G C6 O6 doub N N 225 G C6 N1 sing N N 226 G N1 C2 sing N N 227 G N1 H1 sing N N 228 G C2 N2 sing N N 229 G C2 N3 doub N N 230 G N2 H21 sing N N 231 G N2 H22 sing N N 232 G N3 C4 sing N N 233 H2U P OP1 doub N N 234 H2U P OP2 sing N N 235 H2U P OP3 sing N N 236 H2U P "O5'" sing N N 237 H2U OP2 HOP2 sing N N 238 H2U OP3 HOP3 sing N N 239 H2U "O5'" "C5'" sing N N 240 H2U "C5'" "C4'" sing N N 241 H2U "C5'" "H5'" sing N N 242 H2U "C5'" "H5''" sing N N 243 H2U "C4'" "O4'" sing N N 244 H2U "C4'" "C3'" sing N N 245 H2U "C4'" "H4'" sing N N 246 H2U "O4'" "C1'" sing N N 247 H2U "C3'" "O3'" sing N N 248 H2U "C3'" "C2'" sing N N 249 H2U "C3'" "H3'" sing N N 250 H2U "O3'" "HO3'" sing N N 251 H2U "C1'" "C2'" sing N N 252 H2U "C1'" N1 sing N N 253 H2U "C1'" "H1'" sing N N 254 H2U "C2'" "O2'" sing N N 255 H2U "C2'" "H2'" sing N N 256 H2U "O2'" "HO2'" sing N N 257 H2U N1 C2 sing N N 258 H2U N1 C6 sing N N 259 H2U C2 O2 doub N N 260 H2U C2 N3 sing N N 261 H2U N3 C4 sing N N 262 H2U N3 HN3 sing N N 263 H2U C4 O4 doub N N 264 H2U C4 C5 sing N N 265 H2U C5 C6 sing N N 266 H2U C5 H51 sing N N 267 H2U C5 H52 sing N N 268 H2U C6 H61 sing N N 269 H2U C6 H62 sing N N 270 MIA OP3 P sing N N 271 MIA OP3 HOP3 sing N N 272 MIA P OP1 doub N N 273 MIA P OP2 sing N N 274 MIA P "O5'" sing N N 275 MIA OP2 HOP2 sing N N 276 MIA "O5'" "C5'" sing N N 277 MIA "C5'" "C4'" sing N N 278 MIA "C5'" "H5'" sing N N 279 MIA "C5'" "H5''" sing N N 280 MIA "C4'" "O4'" sing N N 281 MIA "C4'" "C3'" sing N N 282 MIA "C4'" "H4'" sing N N 283 MIA "O4'" "C1'" sing N N 284 MIA "C3'" "O3'" sing N N 285 MIA "C3'" "C2'" sing N N 286 MIA "C3'" "H3'" sing N N 287 MIA "O3'" "HO3'" sing N N 288 MIA "C2'" "O2'" sing N N 289 MIA "C2'" "C1'" sing N N 290 MIA "C2'" "H2'" sing N N 291 MIA "O2'" "HO2'" sing N N 292 MIA "C1'" N9 sing N N 293 MIA "C1'" "H1'" sing N N 294 MIA N9 C8 sing Y N 295 MIA N9 C4 sing Y N 296 MIA C8 N7 doub Y N 297 MIA C8 H8 sing N N 298 MIA N7 C5 sing Y N 299 MIA C5 C6 sing Y N 300 MIA C5 C4 doub Y N 301 MIA C6 N6 sing N N 302 MIA C6 N1 doub Y N 303 MIA N6 C12 sing N N 304 MIA N6 HN6 sing N N 305 MIA N1 C2 sing Y N 306 MIA C2 N3 doub Y N 307 MIA C2 S10 sing N N 308 MIA N3 C4 sing Y N 309 MIA S10 C11 sing N N 310 MIA C11 H111 sing N N 311 MIA C11 H112 sing N N 312 MIA C11 H113 sing N N 313 MIA C12 C13 sing N N 314 MIA C12 H121 sing N N 315 MIA C12 H122 sing N N 316 MIA C13 C14 doub N N 317 MIA C13 H131 sing N N 318 MIA C14 C15 sing N N 319 MIA C14 C16 sing N N 320 MIA C15 H151 sing N N 321 MIA C15 H152 sing N N 322 MIA C15 H153 sing N N 323 MIA C16 H161 sing N N 324 MIA C16 H162 sing N N 325 MIA C16 H163 sing N N 326 PSU N1 C2 sing N N 327 PSU N1 C6 sing N N 328 PSU N1 HN1 sing N N 329 PSU C2 N3 sing N N 330 PSU C2 O2 doub N N 331 PSU N3 C4 sing N N 332 PSU N3 HN3 sing N N 333 PSU C4 C5 sing N N 334 PSU C4 O4 doub N N 335 PSU C5 C6 doub N N 336 PSU C5 "C1'" sing N N 337 PSU C6 H6 sing N N 338 PSU "C1'" "C2'" sing N N 339 PSU "C1'" "O4'" sing N N 340 PSU "C1'" "H1'" sing N N 341 PSU "C2'" "O2'" sing N N 342 PSU "C2'" "C3'" sing N N 343 PSU "C2'" "H2'" sing N N 344 PSU "O2'" "HO2'" sing N N 345 PSU "C3'" "C4'" sing N N 346 PSU "C3'" "O3'" sing N N 347 PSU "C3'" "H3'" sing N N 348 PSU "C4'" "O4'" sing N N 349 PSU "C4'" "C5'" sing N N 350 PSU "C4'" "H4'" sing N N 351 PSU "O3'" "HO3'" sing N N 352 PSU "C5'" "O5'" sing N N 353 PSU "C5'" "H5'" sing N N 354 PSU "C5'" "H5''" sing N N 355 PSU "O5'" P sing N N 356 PSU P OP1 doub N N 357 PSU P OP2 sing N N 358 PSU P OP3 sing N N 359 PSU OP2 HOP2 sing N N 360 PSU OP3 HOP3 sing N N 361 U OP3 P sing N N 362 U OP3 HOP3 sing N N 363 U P OP1 doub N N 364 U P OP2 sing N N 365 U P "O5'" sing N N 366 U OP2 HOP2 sing N N 367 U "O5'" "C5'" sing N N 368 U "C5'" "C4'" sing N N 369 U "C5'" "H5'" sing N N 370 U "C5'" "H5''" sing N N 371 U "C4'" "O4'" sing N N 372 U "C4'" "C3'" sing N N 373 U "C4'" "H4'" sing N N 374 U "O4'" "C1'" sing N N 375 U "C3'" "O3'" sing N N 376 U "C3'" "C2'" sing N N 377 U "C3'" "H3'" sing N N 378 U "O3'" "HO3'" sing N N 379 U "C2'" "O2'" sing N N 380 U "C2'" "C1'" sing N N 381 U "C2'" "H2'" sing N N 382 U "O2'" "HO2'" sing N N 383 U "C1'" N1 sing N N 384 U "C1'" "H1'" sing N N 385 U N1 C2 sing N N 386 U N1 C6 sing N N 387 U C2 O2 doub N N 388 U C2 N3 sing N N 389 U N3 C4 sing N N 390 U N3 H3 sing N N 391 U C4 O4 doub N N 392 U C4 C5 sing N N 393 U C5 C6 doub N N 394 U C5 H5 sing N N 395 U C6 H6 sing N N 396 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTF correction of each particle' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image . _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 localfit ? 'MODEL FITTING' ? ? 2 Situs ? 'MODEL FITTING' ? ? 3 EMAN ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BBV 'double helix' 3BBV 'a-form double helix' 3BBV 'hairpin loop' 3BBV 'mismatched base pair' 3BBV 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 72 1_555 0.514 -0.279 -0.272 -3.126 -0.696 -9.224 1 z_G1:C72_z z 1 ? z 72 ? 19 1 1 A C 2 1_555 A G 71 1_555 0.289 -0.240 -0.140 -6.696 -1.487 3.199 2 z_C2:G71_z z 2 ? z 71 ? 19 1 1 A C 3 1_555 A G 70 1_555 0.787 -0.373 -0.342 4.483 -0.950 -0.672 3 z_C3:G70_z z 3 ? z 70 ? 19 1 1 A C 4 1_555 A G 69 1_555 0.782 -0.124 -0.247 5.193 1.053 2.309 4 z_C4:G69_z z 4 ? z 69 ? 19 1 1 A G 5 1_555 A C 68 1_555 -0.468 0.503 0.893 8.762 -8.676 20.198 5 z_G5:C68_z z 5 ? z 68 ? ? 1 1 A G 6 1_555 A C 67 1_555 -0.047 0.224 0.579 -11.054 -8.751 7.675 6 z_G6:C67_z z 6 ? z 67 ? ? 1 1 A A 7 1_555 A U 66 1_555 0.970 -0.177 -0.206 1.062 -6.026 1.334 7 z_A7:U66_z z 7 ? z 66 ? 20 1 1 A C 49 1_555 A G 65 1_555 0.665 -0.350 -0.631 3.313 2.652 -18.841 8 z_C49:G65_z z 49 ? z 65 ? ? ? 1 A U 50 1_555 A A 64 1_555 -1.623 -0.297 -0.264 2.846 -7.170 -25.400 9 z_U50:A64_z z 50 ? z 64 ? 20 1 1 A U 51 1_555 A G 63 1_555 2.951 -0.520 -0.253 8.958 3.484 1.147 10 z_U51:G63_z z 51 ? z 63 ? 28 ? 1 A G 52 1_555 A C 62 1_555 0.267 0.149 0.771 6.804 -9.440 22.010 11 z_G52:C62_z z 52 ? z 62 ? ? 1 1 A G 53 1_555 A C 61 1_555 0.446 0.074 -0.518 -1.244 6.751 8.596 12 z_G53:C61_z z 53 ? z 61 ? 19 1 1 A 5MU 54 1_555 A A 58 1_555 5.135 -3.954 -0.906 -9.070 -7.032 -87.560 13 z_5MU54:A58_z z 54 ? z 58 ? ? ? 1 A G 22 1_555 A C 13 1_555 -1.092 -0.292 0.439 9.469 1.651 2.890 14 z_G22:C13_z z 22 ? z 13 ? 19 1 1 A A 23 1_555 A U 12 1_555 0.666 0.470 0.081 14.366 -10.086 -18.462 15 z_A23:U12_z z 23 ? z 12 ? 20 1 1 A G 24 1_555 A C 11 1_555 -1.448 0.154 0.231 -14.099 -5.334 6.679 16 z_G24:C11_z z 24 ? z 11 ? ? 1 1 A C 25 1_555 A G 10 1_555 1.916 -0.046 0.189 16.197 -3.793 24.746 17 z_C25:G10_z z 25 ? z 10 ? ? 1 1 A A 26 1_555 A G 44 1_555 0.853 1.756 0.813 26.161 -24.775 -24.249 18 z_A26:G44_z z 26 ? z 44 ? 8 ? 1 A G 27 1_555 A C 43 1_555 0.253 0.326 1.332 7.538 -9.455 -3.411 19 z_G27:C43_z z 27 ? z 43 ? ? 1 1 A G 28 1_555 A C 42 1_555 -0.914 -0.621 0.757 14.217 -2.514 -3.390 20 z_G28:C42_z z 28 ? z 42 ? 19 1 1 A G 29 1_555 A C 41 1_555 -0.626 0.212 0.402 14.530 1.433 16.388 21 z_G29:C41_z z 29 ? z 41 ? ? 1 1 A G 30 1_555 A C 40 1_555 0.942 -0.597 -0.750 -5.153 0.600 -12.676 22 z_G30:C40_z z 30 ? z 40 ? 19 1 1 A A 31 1_555 A PSU 39 1_555 2.632 -0.759 -0.050 -11.623 16.347 1.794 23 z_A31:PSU39_z z 31 ? z 39 ? 21 1 1 A PSU 32 1_555 A A 38 1_555 5.782 -0.666 0.492 6.720 20.514 21.716 24 z_PSU32:A38_z z 32 ? z 38 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 72 1_555 A C 2 1_555 A G 71 1_555 -2.343 -3.216 2.637 -1.312 12.296 40.871 -5.268 3.134 1.715 17.140 1.829 42.624 1 zz_G1C2:G71C72_zz z 1 ? z 72 ? z 2 ? z 71 ? 1 A C 2 1_555 A G 71 1_555 A C 3 1_555 A G 70 1_555 -0.326 -1.070 2.608 2.640 4.630 24.970 -3.430 1.312 2.328 10.555 -6.018 25.523 2 zz_C2C3:G70G71_zz z 2 ? z 71 ? z 3 ? z 70 ? 1 A C 3 1_555 A G 70 1_555 A C 4 1_555 A G 69 1_555 -0.247 -1.323 2.898 -2.617 6.901 37.754 -2.742 0.097 2.636 10.542 3.998 38.443 3 zz_C3C4:G69G70_zz z 3 ? z 70 ? z 4 ? z 69 ? 1 A C 4 1_555 A G 69 1_555 A G 5 1_555 A C 68 1_555 1.100 -1.915 2.444 -10.109 5.501 24.950 -4.884 -3.876 1.449 11.954 21.967 27.438 4 zz_C4G5:C68G69_zz z 4 ? z 69 ? z 5 ? z 68 ? 1 A G 5 1_555 A C 68 1_555 A G 6 1_555 A C 67 1_555 0.184 -3.286 3.355 6.384 -8.757 38.995 -3.636 0.550 3.954 -12.820 -9.346 40.416 5 zz_G5G6:C67C68_zz z 5 ? z 68 ? z 6 ? z 67 ? 1 A G 6 1_555 A C 67 1_555 A A 7 1_555 A U 66 1_555 -1.428 -1.764 3.312 19.489 5.299 30.853 -3.419 4.546 1.808 8.869 -32.619 36.741 6 zz_G6A7:U66C67_zz z 6 ? z 67 ? z 7 ? z 66 ? 1 A A 7 1_555 A U 66 1_555 A C 49 1_555 A G 65 1_555 0.718 -1.907 3.419 18.505 9.631 32.946 -4.082 1.254 2.788 15.231 -29.265 38.840 7 zz_A7C49:G65U66_zz z 7 ? z 66 ? z 49 ? z 65 ? 1 A C 49 1_555 A G 65 1_555 A U 50 1_555 A A 64 1_555 -0.679 -0.443 3.654 -1.186 23.885 20.353 -5.672 1.018 2.084 50.102 2.487 31.307 8 zz_C49U50:A64G65_zz z 49 ? z 65 ? z 50 ? z 64 ? 1 A U 50 1_555 A A 64 1_555 A U 51 1_555 A G 63 1_555 1.231 -1.415 3.146 1.720 8.966 53.212 -2.080 -1.257 2.926 9.927 -1.904 53.933 9 zz_U50U51:G63A64_zz z 50 ? z 64 ? z 51 ? z 63 ? 1 A U 51 1_555 A G 63 1_555 A G 52 1_555 A C 62 1_555 0.950 -2.317 3.188 -7.733 11.243 14.389 -10.377 -5.266 0.645 35.998 24.762 19.805 10 zz_U51G52:C62G63_zz z 51 ? z 63 ? z 52 ? z 62 ? 1 A G 52 1_555 A C 62 1_555 A G 53 1_555 A C 61 1_555 -0.792 -3.013 3.216 7.983 9.319 25.597 -7.864 3.082 1.716 19.659 -16.841 28.342 11 zz_G52G53:C61C62_zz z 52 ? z 62 ? z 53 ? z 61 ? 1 A G 53 1_555 A C 61 1_555 A 5MU 54 1_555 A A 58 1_555 -0.750 -1.296 4.873 7.133 -7.026 101.200 -0.678 0.645 4.887 -4.538 -4.608 101.559 12 zz_G535MU54:A58C61_zz z 53 ? z 61 ? z 54 ? z 58 ? 1 A G 22 1_555 A C 13 1_555 A A 23 1_555 A U 12 1_555 -1.910 -2.137 3.540 -5.508 4.508 30.682 -4.854 2.402 3.480 8.378 10.238 31.478 13 zz_G22A23:U12C13_zz z 22 ? z 13 ? z 23 ? z 12 ? 1 A A 23 1_555 A U 12 1_555 A G 24 1_555 A C 11 1_555 1.418 -1.465 3.186 1.424 14.841 39.334 -3.447 -1.846 2.543 21.149 -2.030 41.960 14 zz_A23G24:C11U12_zz z 23 ? z 12 ? z 24 ? z 11 ? 1 A G 24 1_555 A C 11 1_555 A C 25 1_555 A G 10 1_555 1.576 0.107 2.298 -5.691 -3.807 40.591 0.428 -2.655 2.051 -5.440 8.133 41.140 15 zz_G24C25:G10C11_zz z 24 ? z 11 ? z 25 ? z 10 ? 1 A C 25 1_555 A G 10 1_555 A A 26 1_555 A G 44 1_555 2.456 -3.844 2.113 -10.450 3.442 62.699 -3.734 -2.589 1.537 3.281 9.962 63.560 16 zz_C25A26:G44G10_zz z 25 ? z 10 ? z 26 ? z 44 ? 1 A A 26 1_555 A G 44 1_555 A G 27 1_555 A C 43 1_555 1.073 -0.224 4.168 -2.740 8.957 30.872 -2.402 -2.544 3.848 16.361 5.005 32.228 17 zz_A26G27:C43G44_zz z 26 ? z 44 ? z 27 ? z 43 ? 1 A G 27 1_555 A C 43 1_555 A G 28 1_555 A C 42 1_555 -0.082 -1.984 2.967 -3.623 -6.932 25.382 -2.513 -0.766 3.360 -15.319 8.007 26.541 18 zz_G27G28:C42C43_zz z 27 ? z 43 ? z 28 ? z 42 ? 1 A G 28 1_555 A C 42 1_555 A G 29 1_555 A C 41 1_555 1.163 -1.080 3.683 -0.401 12.429 31.886 -3.935 -2.047 3.048 21.624 0.698 34.166 19 zz_G28G29:C41C42_zz z 28 ? z 42 ? z 29 ? z 41 ? 1 A G 29 1_555 A C 41 1_555 A G 30 1_555 A C 40 1_555 -1.833 -1.430 3.898 7.142 6.013 41.910 -2.625 3.301 3.330 8.283 -9.839 42.891 20 zz_G29G30:C40C41_zz z 29 ? z 41 ? z 30 ? z 40 ? 1 A G 30 1_555 A C 40 1_555 A A 31 1_555 A PSU 39 1_555 1.127 -1.317 3.256 -1.636 6.501 49.230 -2.030 -1.459 3.034 7.762 1.954 49.656 21 zz_G30A31:PSU39C40_zz z 30 ? z 40 ? z 31 ? z 39 ? 1 A A 31 1_555 A PSU 39 1_555 A PSU 32 1_555 A A 38 1_555 0.129 -3.356 3.160 8.788 4.974 25.403 -8.197 1.651 2.384 10.783 -19.052 27.306 22 zz_A31PSU32:A38PSU39_zz z 31 ? z 39 ? z 32 ? z 38 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2OW8 # _atom_sites.entry_id 3BBV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_