data_3BDI # _entry.id 3BDI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BDI pdb_00003bdi 10.2210/pdb3bdi/pdb RCSB RCSB045385 ? ? WWPDB D_1000045385 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 388819 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3BDI _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-11-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3BDI _cell.length_a 43.384 _cell.length_b 46.292 _cell.length_c 101.644 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BDI _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein Ta0194' 23516.635 1 ? ? ? ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 3 ? ? ? ? 3 water nat water 18.015 203 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)ALQEEFIDVNGTRVFQRK(MSE)VTDSNRRSIALFHGYSFTS(MSE)DWDKADLFNNYSKIGYNVYAPDYPGFG RSASSEKYGIDRGDLKHAAEFIRDYLKANGVARSVI(MSE)GAS(MSE)GGG(MSE)VI(MSE)TTLQYPDIVDGIIAVA PAWVESLKGD(MSE)KKIRQKTLLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYIEKPEEFVRITVDFLRNL ; _entity_poly.pdbx_seq_one_letter_code_can ;GMALQEEFIDVNGTRVFQRKMVTDSNRRSIALFHGYSFTSMDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDR GDLKHAAEFIRDYLKANGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVESLKGDMKKIRQKTLLVWGSKDHV VPIALSKEYASIISGSRLEIVEGSGHPVYIEKPEEFVRITVDFLRNL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 388819 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ALA n 1 4 LEU n 1 5 GLN n 1 6 GLU n 1 7 GLU n 1 8 PHE n 1 9 ILE n 1 10 ASP n 1 11 VAL n 1 12 ASN n 1 13 GLY n 1 14 THR n 1 15 ARG n 1 16 VAL n 1 17 PHE n 1 18 GLN n 1 19 ARG n 1 20 LYS n 1 21 MSE n 1 22 VAL n 1 23 THR n 1 24 ASP n 1 25 SER n 1 26 ASN n 1 27 ARG n 1 28 ARG n 1 29 SER n 1 30 ILE n 1 31 ALA n 1 32 LEU n 1 33 PHE n 1 34 HIS n 1 35 GLY n 1 36 TYR n 1 37 SER n 1 38 PHE n 1 39 THR n 1 40 SER n 1 41 MSE n 1 42 ASP n 1 43 TRP n 1 44 ASP n 1 45 LYS n 1 46 ALA n 1 47 ASP n 1 48 LEU n 1 49 PHE n 1 50 ASN n 1 51 ASN n 1 52 TYR n 1 53 SER n 1 54 LYS n 1 55 ILE n 1 56 GLY n 1 57 TYR n 1 58 ASN n 1 59 VAL n 1 60 TYR n 1 61 ALA n 1 62 PRO n 1 63 ASP n 1 64 TYR n 1 65 PRO n 1 66 GLY n 1 67 PHE n 1 68 GLY n 1 69 ARG n 1 70 SER n 1 71 ALA n 1 72 SER n 1 73 SER n 1 74 GLU n 1 75 LYS n 1 76 TYR n 1 77 GLY n 1 78 ILE n 1 79 ASP n 1 80 ARG n 1 81 GLY n 1 82 ASP n 1 83 LEU n 1 84 LYS n 1 85 HIS n 1 86 ALA n 1 87 ALA n 1 88 GLU n 1 89 PHE n 1 90 ILE n 1 91 ARG n 1 92 ASP n 1 93 TYR n 1 94 LEU n 1 95 LYS n 1 96 ALA n 1 97 ASN n 1 98 GLY n 1 99 VAL n 1 100 ALA n 1 101 ARG n 1 102 SER n 1 103 VAL n 1 104 ILE n 1 105 MSE n 1 106 GLY n 1 107 ALA n 1 108 SER n 1 109 MSE n 1 110 GLY n 1 111 GLY n 1 112 GLY n 1 113 MSE n 1 114 VAL n 1 115 ILE n 1 116 MSE n 1 117 THR n 1 118 THR n 1 119 LEU n 1 120 GLN n 1 121 TYR n 1 122 PRO n 1 123 ASP n 1 124 ILE n 1 125 VAL n 1 126 ASP n 1 127 GLY n 1 128 ILE n 1 129 ILE n 1 130 ALA n 1 131 VAL n 1 132 ALA n 1 133 PRO n 1 134 ALA n 1 135 TRP n 1 136 VAL n 1 137 GLU n 1 138 SER n 1 139 LEU n 1 140 LYS n 1 141 GLY n 1 142 ASP n 1 143 MSE n 1 144 LYS n 1 145 LYS n 1 146 ILE n 1 147 ARG n 1 148 GLN n 1 149 LYS n 1 150 THR n 1 151 LEU n 1 152 LEU n 1 153 VAL n 1 154 TRP n 1 155 GLY n 1 156 SER n 1 157 LYS n 1 158 ASP n 1 159 HIS n 1 160 VAL n 1 161 VAL n 1 162 PRO n 1 163 ILE n 1 164 ALA n 1 165 LEU n 1 166 SER n 1 167 LYS n 1 168 GLU n 1 169 TYR n 1 170 ALA n 1 171 SER n 1 172 ILE n 1 173 ILE n 1 174 SER n 1 175 GLY n 1 176 SER n 1 177 ARG n 1 178 LEU n 1 179 GLU n 1 180 ILE n 1 181 VAL n 1 182 GLU n 1 183 GLY n 1 184 SER n 1 185 GLY n 1 186 HIS n 1 187 PRO n 1 188 VAL n 1 189 TYR n 1 190 ILE n 1 191 GLU n 1 192 LYS n 1 193 PRO n 1 194 GLU n 1 195 GLU n 1 196 PHE n 1 197 VAL n 1 198 ARG n 1 199 ILE n 1 200 THR n 1 201 VAL n 1 202 ASP n 1 203 PHE n 1 204 LEU n 1 205 ARG n 1 206 ASN n 1 207 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermoplasma _entity_src_gen.pdbx_gene_src_gene 'NP_393672.1, Ta0194' _entity_src_gen.gene_src_species 'Thermoplasma acidophilum' _entity_src_gen.gene_src_strain 'DSM 1728, AMRC-C165, IFO 15155, JCM 9062' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermoplasma acidophilum DSM 1728' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273075 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 25905 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HLN3_THEAC _struct_ref.pdbx_db_accession Q9HLN3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NGTRVFQRKMVTDSNRRSIALFHGYSFTSMDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGDLKHAAEFIR DYLKANGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVESLKGDMKKIRQKTLLVWGSKDHVVPIALSKEYAS IISGSRLEIVEGSGHPVYIKKPEEFVRITVDFLRNL ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BDI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 12 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 207 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HLN3 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 197 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 11 _struct_ref_seq.pdbx_auth_seq_align_end 206 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BDI GLY A 1 ? UNP Q9HLN3 ? ? 'expression tag' 0 1 1 3BDI MSE A 2 ? UNP Q9HLN3 ? ? variant 1 2 1 3BDI ALA A 3 ? UNP Q9HLN3 ? ? variant 2 3 1 3BDI LEU A 4 ? UNP Q9HLN3 ? ? variant 3 4 1 3BDI GLN A 5 ? UNP Q9HLN3 ? ? variant 4 5 1 3BDI GLU A 6 ? UNP Q9HLN3 ? ? variant 5 6 1 3BDI GLU A 7 ? UNP Q9HLN3 ? ? variant 6 7 1 3BDI PHE A 8 ? UNP Q9HLN3 ? ? variant 7 8 1 3BDI ILE A 9 ? UNP Q9HLN3 ? ? variant 8 9 1 3BDI ASP A 10 ? UNP Q9HLN3 ? ? variant 9 10 1 3BDI VAL A 11 ? UNP Q9HLN3 ? ? variant 10 11 1 3BDI GLU A 191 ? UNP Q9HLN3 LYS 181 'SEE REMARK 999' 190 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3BDI # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details 'NANODROP, 5.0% PEG 3000, 44.0% PEG 400, 0.1M MES pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2007-10-25 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94939 1.0 2 0.97939 1.0 3 0.97953 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength_list '0.94939, 0.97939, 0.97953' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3BDI _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 27.338 _reflns.number_obs 37089 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_netI_over_sigmaI 3.100 _reflns.pdbx_Rsym_value 0.087 _reflns.pdbx_redundancy 3.500 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 12.90 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.45 1.49 ? 6659 ? 0.194 3.5 0.194 ? 2.50 ? 2676 99.90 1 1 1.49 1.53 ? 8367 ? 0.190 3.7 0.190 ? 3.20 ? 2614 100.00 2 1 1.53 1.57 ? 9280 ? 0.170 4.1 0.170 ? 3.60 ? 2580 100.00 3 1 1.57 1.62 ? 9007 ? 0.143 4.7 0.143 ? 3.60 ? 2499 100.00 4 1 1.62 1.67 ? 8776 ? 0.130 5.2 0.130 ? 3.60 ? 2430 100.00 5 1 1.67 1.73 ? 8416 ? 0.121 5.5 0.121 ? 3.60 ? 2327 100.00 6 1 1.73 1.80 ? 8194 ? 0.112 5.7 0.112 ? 3.60 ? 2256 100.00 7 1 1.80 1.87 ? 7941 ? 0.106 6.1 0.106 ? 3.60 ? 2196 100.00 8 1 1.87 1.96 ? 7503 ? 0.106 6.1 0.106 ? 3.60 ? 2076 100.00 9 1 1.96 2.05 ? 7380 ? 0.097 6.4 0.097 ? 3.60 ? 2039 100.00 10 1 2.05 2.16 ? 6853 ? 0.081 7.6 0.081 ? 3.60 ? 1897 100.00 11 1 2.16 2.29 ? 6637 ? 0.079 8.1 0.079 ? 3.60 ? 1836 100.00 12 1 2.29 2.45 ? 6222 ? 0.082 7.4 0.082 ? 3.60 ? 1717 100.00 13 1 2.45 2.65 ? 5662 ? 0.094 6.2 0.094 ? 3.60 ? 1587 100.00 14 1 2.65 2.90 ? 5340 ? 0.088 5.1 0.088 ? 3.50 ? 1506 100.00 15 1 2.90 3.24 ? 4720 ? 0.077 7.1 0.077 ? 3.50 ? 1330 100.00 16 1 3.24 3.74 ? 4275 ? 0.072 6.4 0.072 ? 3.50 ? 1209 100.00 17 1 3.74 4.59 ? 3641 ? 0.078 5.6 0.078 ? 3.50 ? 1034 99.90 18 1 4.59 6.48 ? 2745 ? 0.085 5.0 0.085 ? 3.40 ? 808 99.40 19 1 6.48 27.338 ? 1474 ? 0.096 4.6 0.096 ? 3.10 ? 472 96.90 20 1 # _refine.entry_id 3BDI _refine.ls_d_res_high 1.450 _refine.ls_d_res_low 27.338 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.880 _refine.ls_number_reflns_obs 37039 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. POLYETHYLENE GLYCOL MOLECULES FROM THE CRYSTALLIZATION CONDITIONS WERE MODELED. ; _refine.ls_R_factor_obs 0.164 _refine.ls_R_factor_R_work 0.163 _refine.ls_R_factor_R_free 0.189 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1851 _refine.B_iso_mean 11.878 _refine.aniso_B[1][1] 0.780 _refine.aniso_B[2][2] -0.640 _refine.aniso_B[3][3] -0.140 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.pdbx_overall_ESU_R 0.064 _refine.pdbx_overall_ESU_R_Free 0.066 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 2.094 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1596 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 203 _refine_hist.number_atoms_total 1820 _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 27.338 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1779 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1211 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2414 1.622 1.956 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2953 0.973 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 232 6.481 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 75 40.007 23.867 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 301 12.771 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 12.993 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 260 0.102 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2038 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 373 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 366 0.221 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1255 0.196 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 878 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 895 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 154 0.219 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 8 0.145 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 67 0.292 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 22 0.115 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1191 1.847 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 453 0.478 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1795 2.415 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 752 3.791 7.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 619 4.910 9.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.780 _refine_ls_shell.number_reflns_R_work 2548 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.196 _refine_ls_shell.R_factor_R_free 0.267 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 127 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2675 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BDI _struct.title 'Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;NP_393672.1, predicted CIB-like hydrolase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3BDI # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 39 ? ALA A 46 ? THR A 38 ALA A 45 5 ? 8 HELX_P HELX_P2 2 ASP A 47 ? LYS A 54 ? ASP A 46 LYS A 53 1 ? 8 HELX_P HELX_P3 3 ASP A 82 ? ASN A 97 ? ASP A 81 ASN A 96 1 ? 16 HELX_P HELX_P4 4 SER A 108 ? TYR A 121 ? SER A 107 TYR A 120 1 ? 14 HELX_P HELX_P5 5 VAL A 136 ? SER A 138 ? VAL A 135 SER A 137 5 ? 3 HELX_P HELX_P6 6 LEU A 139 ? LYS A 144 ? LEU A 138 LYS A 143 1 ? 6 HELX_P HELX_P7 7 PRO A 162 ? ILE A 173 ? PRO A 161 ILE A 172 1 ? 12 HELX_P HELX_P8 8 PRO A 187 ? LYS A 192 ? PRO A 186 LYS A 191 1 ? 6 HELX_P HELX_P9 9 LYS A 192 ? ASN A 206 ? LYS A 191 ASN A 205 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ALA 3 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A LYS 20 C ? ? ? 1_555 A MSE 21 N ? ? A LYS 19 A MSE 20 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 21 C ? ? ? 1_555 A VAL 22 N ? ? A MSE 20 A VAL 21 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A SER 40 C ? ? ? 1_555 A MSE 41 N ? ? A SER 39 A MSE 40 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale6 covale both ? A MSE 41 C ? ? ? 1_555 A ASP 42 N ? ? A MSE 40 A ASP 41 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A ILE 104 C ? ? ? 1_555 A MSE 105 N A ? A ILE 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A ILE 104 C ? ? ? 1_555 A MSE 105 N B ? A ILE 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale9 covale both ? A MSE 105 C A ? ? 1_555 A GLY 106 N ? ? A MSE 104 A GLY 105 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale10 covale both ? A MSE 105 C B ? ? 1_555 A GLY 106 N ? ? A MSE 104 A GLY 105 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale11 covale both ? A SER 108 C ? ? ? 1_555 A MSE 109 N A ? A SER 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? A SER 108 C ? ? ? 1_555 A MSE 109 N B ? A SER 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale13 covale both ? A MSE 109 C A ? ? 1_555 A GLY 110 N ? ? A MSE 108 A GLY 109 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale14 covale both ? A MSE 109 C B ? ? 1_555 A GLY 110 N ? ? A MSE 108 A GLY 109 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale15 covale both ? A GLY 112 C ? ? ? 1_555 A MSE 113 N ? ? A GLY 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale16 covale both ? A MSE 113 C ? ? ? 1_555 A VAL 114 N ? ? A MSE 112 A VAL 113 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale17 covale both ? A ILE 115 C ? ? ? 1_555 A MSE 116 N ? ? A ILE 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale18 covale both ? A MSE 116 C ? ? ? 1_555 A THR 117 N ? ? A MSE 115 A THR 116 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale19 covale both ? A ASP 142 C ? ? ? 1_555 A MSE 143 N ? ? A ASP 141 A MSE 142 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale20 covale both ? A MSE 143 C ? ? ? 1_555 A LYS 144 N ? ? A MSE 142 A LYS 143 1_555 ? ? ? ? ? ? ? 1.346 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 5 ? VAL A 11 ? GLN A 4 VAL A 10 A 2 THR A 14 ? MSE A 21 ? THR A 13 MSE A 20 A 3 TYR A 57 ? PRO A 62 ? TYR A 56 PRO A 61 A 4 ARG A 28 ? PHE A 33 ? ARG A 27 PHE A 32 A 5 SER A 102 ? ALA A 107 ? SER A 101 ALA A 106 A 6 VAL A 125 ? VAL A 131 ? VAL A 124 VAL A 130 A 7 THR A 150 ? GLY A 155 ? THR A 149 GLY A 154 A 8 ARG A 177 ? VAL A 181 ? ARG A 176 VAL A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 7 ? N GLU A 6 O GLN A 18 ? O GLN A 17 A 2 3 N MSE A 21 ? N MSE A 20 O VAL A 59 ? O VAL A 58 A 3 4 O ASN A 58 ? O ASN A 57 N ARG A 28 ? N ARG A 27 A 4 5 N SER A 29 ? N SER A 28 O VAL A 103 ? O VAL A 102 A 5 6 N GLY A 106 ? N GLY A 105 O VAL A 131 ? O VAL A 130 A 6 7 N ALA A 130 ? N ALA A 129 O LEU A 151 ? O LEU A 150 A 7 8 N LEU A 152 ? N LEU A 151 O ARG A 177 ? O ARG A 176 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PEG 207 ? 2 'BINDING SITE FOR RESIDUE PEG A 207' AC2 Software A PEG 208 ? 2 'BINDING SITE FOR RESIDUE PEG A 208' AC3 Software A PEG 209 ? 6 'BINDING SITE FOR RESIDUE PEG A 209' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ASN A 12 ? ASN A 11 . ? 1_555 ? 2 AC1 2 LYS A 75 ? LYS A 74 . ? 1_555 ? 3 AC2 2 TYR A 36 ? TYR A 35 . ? 1_555 ? 4 AC2 2 GLY A 66 ? GLY A 65 . ? 1_555 ? 5 AC3 6 GLY A 68 ? GLY A 67 . ? 3_655 ? 6 AC3 6 ARG A 69 ? ARG A 68 . ? 3_655 ? 7 AC3 6 GLU A 191 ? GLU A 190 . ? 1_555 ? 8 AC3 6 LYS A 192 ? LYS A 191 . ? 1_555 ? 9 AC3 6 HOH E . ? HOH A 366 . ? 1_565 ? 10 AC3 6 HOH E . ? HOH A 397 . ? 1_565 ? # _atom_sites.entry_id 3BDI _atom_sites.fract_transf_matrix[1][1] 0.023050 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009838 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ALA 3 2 2 ALA ALA A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 PHE 8 7 7 PHE PHE A . n A 1 9 ILE 9 8 8 ILE ILE A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 VAL 11 10 10 VAL VAL A . n A 1 12 ASN 12 11 11 ASN ASN A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 VAL 16 15 15 VAL VAL A . n A 1 17 PHE 17 16 16 PHE PHE A . n A 1 18 GLN 18 17 17 GLN GLN A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 MSE 21 20 20 MSE MSE A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 ASP 24 23 23 ASP ASP A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 ASN 26 25 25 ASN ASN A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 ARG 28 27 27 ARG ARG A . n A 1 29 SER 29 28 28 SER SER A . n A 1 30 ILE 30 29 29 ILE ILE A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 PHE 33 32 32 PHE PHE A . n A 1 34 HIS 34 33 33 HIS HIS A . n A 1 35 GLY 35 34 34 GLY GLY A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 PHE 38 37 37 PHE PHE A . n A 1 39 THR 39 38 38 THR THR A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 MSE 41 40 40 MSE MSE A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 TRP 43 42 42 TRP TRP A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 ASN 51 50 50 ASN ASN A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 SER 53 52 52 SER SER A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 TYR 57 56 56 TYR TYR A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 TYR 60 59 59 TYR TYR A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 PRO 62 61 61 PRO PRO A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 TYR 64 63 63 TYR TYR A . n A 1 65 PRO 65 64 64 PRO PRO A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 PHE 67 66 66 PHE PHE A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 SER 70 69 69 SER SER A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 TYR 76 75 75 TYR TYR A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 HIS 85 84 84 HIS HIS A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 ARG 91 90 90 ARG ARG A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 ASN 97 96 96 ASN ASN A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 ALA 100 99 99 ALA ALA A . n A 1 101 ARG 101 100 100 ARG ARG A . n A 1 102 SER 102 101 101 SER SER A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 MSE 105 104 104 MSE MSE A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 MSE 109 108 108 MSE MSE A . n A 1 110 GLY 110 109 109 GLY GLY A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 GLY 112 111 111 GLY GLY A . n A 1 113 MSE 113 112 112 MSE MSE A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 MSE 116 115 115 MSE MSE A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 GLN 120 119 119 GLN GLN A . n A 1 121 TYR 121 120 120 TYR TYR A . n A 1 122 PRO 122 121 121 PRO PRO A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 VAL 125 124 124 VAL VAL A . n A 1 126 ASP 126 125 125 ASP ASP A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 ILE 128 127 127 ILE ILE A . n A 1 129 ILE 129 128 128 ILE ILE A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 ALA 132 131 131 ALA ALA A . n A 1 133 PRO 133 132 132 PRO PRO A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 TRP 135 134 134 TRP TRP A . n A 1 136 VAL 136 135 135 VAL VAL A . n A 1 137 GLU 137 136 136 GLU GLU A . n A 1 138 SER 138 137 137 SER SER A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 LYS 140 139 139 LYS LYS A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 MSE 143 142 142 MSE MSE A . n A 1 144 LYS 144 143 143 LYS LYS A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 ILE 146 145 145 ILE ILE A . n A 1 147 ARG 147 146 146 ARG ARG A . n A 1 148 GLN 148 147 147 GLN GLN A . n A 1 149 LYS 149 148 148 LYS LYS A . n A 1 150 THR 150 149 149 THR THR A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 TRP 154 153 153 TRP TRP A . n A 1 155 GLY 155 154 154 GLY GLY A . n A 1 156 SER 156 155 155 SER SER A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 ASP 158 157 157 ASP ASP A . n A 1 159 HIS 159 158 158 HIS HIS A . n A 1 160 VAL 160 159 159 VAL VAL A . n A 1 161 VAL 161 160 160 VAL VAL A . n A 1 162 PRO 162 161 161 PRO PRO A . n A 1 163 ILE 163 162 162 ILE ILE A . n A 1 164 ALA 164 163 163 ALA ALA A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 SER 166 165 165 SER SER A . n A 1 167 LYS 167 166 166 LYS LYS A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 TYR 169 168 168 TYR TYR A . n A 1 170 ALA 170 169 169 ALA ALA A . n A 1 171 SER 171 170 170 SER SER A . n A 1 172 ILE 172 171 171 ILE ILE A . n A 1 173 ILE 173 172 172 ILE ILE A . n A 1 174 SER 174 173 173 SER SER A . n A 1 175 GLY 175 174 174 GLY GLY A . n A 1 176 SER 176 175 175 SER SER A . n A 1 177 ARG 177 176 176 ARG ARG A . n A 1 178 LEU 178 177 177 LEU LEU A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 ILE 180 179 179 ILE ILE A . n A 1 181 VAL 181 180 180 VAL VAL A . n A 1 182 GLU 182 181 181 GLU GLU A . n A 1 183 GLY 183 182 182 GLY GLY A . n A 1 184 SER 184 183 183 SER SER A . n A 1 185 GLY 185 184 184 GLY GLY A . n A 1 186 HIS 186 185 185 HIS HIS A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 VAL 188 187 187 VAL VAL A . n A 1 189 TYR 189 188 188 TYR TYR A . n A 1 190 ILE 190 189 189 ILE ILE A . n A 1 191 GLU 191 190 190 GLU GLU A . n A 1 192 LYS 192 191 191 LYS LYS A . n A 1 193 PRO 193 192 192 PRO PRO A . n A 1 194 GLU 194 193 193 GLU GLU A . n A 1 195 GLU 195 194 194 GLU GLU A . n A 1 196 PHE 196 195 195 PHE PHE A . n A 1 197 VAL 197 196 196 VAL VAL A . n A 1 198 ARG 198 197 197 ARG ARG A . n A 1 199 ILE 199 198 198 ILE ILE A . n A 1 200 THR 200 199 199 THR THR A . n A 1 201 VAL 201 200 200 VAL VAL A . n A 1 202 ASP 202 201 201 ASP ASP A . n A 1 203 PHE 203 202 202 PHE PHE A . n A 1 204 LEU 204 203 203 LEU LEU A . n A 1 205 ARG 205 204 204 ARG ARG A . n A 1 206 ASN 206 205 205 ASN ASN A . n A 1 207 LEU 207 206 206 LEU LEU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG 1 207 1 PEG PEG A . C 2 PEG 1 208 2 PEG PEG A . D 2 PEG 1 209 3 PEG PEG A . E 3 HOH 1 210 4 HOH HOH A . E 3 HOH 2 211 5 HOH HOH A . E 3 HOH 3 212 6 HOH HOH A . E 3 HOH 4 213 7 HOH HOH A . E 3 HOH 5 214 8 HOH HOH A . E 3 HOH 6 215 9 HOH HOH A . E 3 HOH 7 216 10 HOH HOH A . E 3 HOH 8 217 11 HOH HOH A . E 3 HOH 9 218 12 HOH HOH A . E 3 HOH 10 219 13 HOH HOH A . E 3 HOH 11 220 14 HOH HOH A . E 3 HOH 12 221 15 HOH HOH A . E 3 HOH 13 222 16 HOH HOH A . E 3 HOH 14 223 17 HOH HOH A . E 3 HOH 15 224 18 HOH HOH A . E 3 HOH 16 225 19 HOH HOH A . E 3 HOH 17 226 20 HOH HOH A . E 3 HOH 18 227 21 HOH HOH A . E 3 HOH 19 228 22 HOH HOH A . E 3 HOH 20 229 23 HOH HOH A . E 3 HOH 21 230 24 HOH HOH A . E 3 HOH 22 231 25 HOH HOH A . E 3 HOH 23 232 26 HOH HOH A . E 3 HOH 24 233 27 HOH HOH A . E 3 HOH 25 234 28 HOH HOH A . E 3 HOH 26 235 29 HOH HOH A . E 3 HOH 27 236 30 HOH HOH A . E 3 HOH 28 237 31 HOH HOH A . E 3 HOH 29 238 32 HOH HOH A . E 3 HOH 30 239 33 HOH HOH A . E 3 HOH 31 240 34 HOH HOH A . E 3 HOH 32 241 35 HOH HOH A . E 3 HOH 33 242 36 HOH HOH A . E 3 HOH 34 243 37 HOH HOH A . E 3 HOH 35 244 38 HOH HOH A . E 3 HOH 36 245 39 HOH HOH A . E 3 HOH 37 246 40 HOH HOH A . E 3 HOH 38 247 41 HOH HOH A . E 3 HOH 39 248 42 HOH HOH A . E 3 HOH 40 249 43 HOH HOH A . E 3 HOH 41 250 44 HOH HOH A . E 3 HOH 42 251 45 HOH HOH A . E 3 HOH 43 252 46 HOH HOH A . E 3 HOH 44 253 47 HOH HOH A . E 3 HOH 45 254 48 HOH HOH A . E 3 HOH 46 255 49 HOH HOH A . E 3 HOH 47 256 50 HOH HOH A . E 3 HOH 48 257 51 HOH HOH A . E 3 HOH 49 258 52 HOH HOH A . E 3 HOH 50 259 53 HOH HOH A . E 3 HOH 51 260 54 HOH HOH A . E 3 HOH 52 261 55 HOH HOH A . E 3 HOH 53 262 56 HOH HOH A . E 3 HOH 54 263 57 HOH HOH A . E 3 HOH 55 264 58 HOH HOH A . E 3 HOH 56 265 59 HOH HOH A . E 3 HOH 57 266 60 HOH HOH A . E 3 HOH 58 267 61 HOH HOH A . E 3 HOH 59 268 62 HOH HOH A . E 3 HOH 60 269 63 HOH HOH A . E 3 HOH 61 270 64 HOH HOH A . E 3 HOH 62 271 65 HOH HOH A . E 3 HOH 63 272 66 HOH HOH A . E 3 HOH 64 273 67 HOH HOH A . E 3 HOH 65 274 68 HOH HOH A . E 3 HOH 66 275 69 HOH HOH A . E 3 HOH 67 276 70 HOH HOH A . E 3 HOH 68 277 71 HOH HOH A . E 3 HOH 69 278 72 HOH HOH A . E 3 HOH 70 279 73 HOH HOH A . E 3 HOH 71 280 74 HOH HOH A . E 3 HOH 72 281 75 HOH HOH A . E 3 HOH 73 282 76 HOH HOH A . E 3 HOH 74 283 77 HOH HOH A . E 3 HOH 75 284 78 HOH HOH A . E 3 HOH 76 285 79 HOH HOH A . E 3 HOH 77 286 80 HOH HOH A . E 3 HOH 78 287 81 HOH HOH A . E 3 HOH 79 288 82 HOH HOH A . E 3 HOH 80 289 83 HOH HOH A . E 3 HOH 81 290 84 HOH HOH A . E 3 HOH 82 291 85 HOH HOH A . E 3 HOH 83 292 86 HOH HOH A . E 3 HOH 84 293 87 HOH HOH A . E 3 HOH 85 294 88 HOH HOH A . E 3 HOH 86 295 89 HOH HOH A . E 3 HOH 87 296 90 HOH HOH A . E 3 HOH 88 297 91 HOH HOH A . E 3 HOH 89 298 92 HOH HOH A . E 3 HOH 90 299 93 HOH HOH A . E 3 HOH 91 300 94 HOH HOH A . E 3 HOH 92 301 95 HOH HOH A . E 3 HOH 93 302 96 HOH HOH A . E 3 HOH 94 303 97 HOH HOH A . E 3 HOH 95 304 98 HOH HOH A . E 3 HOH 96 305 99 HOH HOH A . E 3 HOH 97 306 100 HOH HOH A . E 3 HOH 98 307 101 HOH HOH A . E 3 HOH 99 308 102 HOH HOH A . E 3 HOH 100 309 103 HOH HOH A . E 3 HOH 101 310 104 HOH HOH A . E 3 HOH 102 311 105 HOH HOH A . E 3 HOH 103 312 106 HOH HOH A . E 3 HOH 104 313 107 HOH HOH A . E 3 HOH 105 314 108 HOH HOH A . E 3 HOH 106 315 109 HOH HOH A . E 3 HOH 107 316 110 HOH HOH A . E 3 HOH 108 317 111 HOH HOH A . E 3 HOH 109 318 112 HOH HOH A . E 3 HOH 110 319 113 HOH HOH A . E 3 HOH 111 320 114 HOH HOH A . E 3 HOH 112 321 115 HOH HOH A . E 3 HOH 113 322 116 HOH HOH A . E 3 HOH 114 323 117 HOH HOH A . E 3 HOH 115 324 118 HOH HOH A . E 3 HOH 116 325 119 HOH HOH A . E 3 HOH 117 326 120 HOH HOH A . E 3 HOH 118 327 121 HOH HOH A . E 3 HOH 119 328 122 HOH HOH A . E 3 HOH 120 329 123 HOH HOH A . E 3 HOH 121 330 124 HOH HOH A . E 3 HOH 122 331 125 HOH HOH A . E 3 HOH 123 332 126 HOH HOH A . E 3 HOH 124 333 127 HOH HOH A . E 3 HOH 125 334 128 HOH HOH A . E 3 HOH 126 335 129 HOH HOH A . E 3 HOH 127 336 130 HOH HOH A . E 3 HOH 128 337 131 HOH HOH A . E 3 HOH 129 338 132 HOH HOH A . E 3 HOH 130 339 133 HOH HOH A . E 3 HOH 131 340 134 HOH HOH A . E 3 HOH 132 341 135 HOH HOH A . E 3 HOH 133 342 136 HOH HOH A . E 3 HOH 134 343 137 HOH HOH A . E 3 HOH 135 344 138 HOH HOH A . E 3 HOH 136 345 139 HOH HOH A . E 3 HOH 137 346 140 HOH HOH A . E 3 HOH 138 347 141 HOH HOH A . E 3 HOH 139 348 142 HOH HOH A . E 3 HOH 140 349 143 HOH HOH A . E 3 HOH 141 350 144 HOH HOH A . E 3 HOH 142 351 145 HOH HOH A . E 3 HOH 143 352 146 HOH HOH A . E 3 HOH 144 353 147 HOH HOH A . E 3 HOH 145 354 148 HOH HOH A . E 3 HOH 146 355 149 HOH HOH A . E 3 HOH 147 356 150 HOH HOH A . E 3 HOH 148 357 151 HOH HOH A . E 3 HOH 149 358 152 HOH HOH A . E 3 HOH 150 359 153 HOH HOH A . E 3 HOH 151 360 154 HOH HOH A . E 3 HOH 152 361 155 HOH HOH A . E 3 HOH 153 362 156 HOH HOH A . E 3 HOH 154 363 157 HOH HOH A . E 3 HOH 155 364 158 HOH HOH A . E 3 HOH 156 365 159 HOH HOH A . E 3 HOH 157 366 160 HOH HOH A . E 3 HOH 158 367 161 HOH HOH A . E 3 HOH 159 368 162 HOH HOH A . E 3 HOH 160 369 163 HOH HOH A . E 3 HOH 161 370 164 HOH HOH A . E 3 HOH 162 371 165 HOH HOH A . E 3 HOH 163 372 166 HOH HOH A . E 3 HOH 164 373 167 HOH HOH A . E 3 HOH 165 374 168 HOH HOH A . E 3 HOH 166 375 169 HOH HOH A . E 3 HOH 167 376 170 HOH HOH A . E 3 HOH 168 377 171 HOH HOH A . E 3 HOH 169 378 172 HOH HOH A . E 3 HOH 170 379 173 HOH HOH A . E 3 HOH 171 380 174 HOH HOH A . E 3 HOH 172 381 175 HOH HOH A . E 3 HOH 173 382 176 HOH HOH A . E 3 HOH 174 383 177 HOH HOH A . E 3 HOH 175 384 178 HOH HOH A . E 3 HOH 176 385 179 HOH HOH A . E 3 HOH 177 386 180 HOH HOH A . E 3 HOH 178 387 181 HOH HOH A . E 3 HOH 179 388 182 HOH HOH A . E 3 HOH 180 389 183 HOH HOH A . E 3 HOH 181 390 184 HOH HOH A . E 3 HOH 182 391 185 HOH HOH A . E 3 HOH 183 392 186 HOH HOH A . E 3 HOH 184 393 187 HOH HOH A . E 3 HOH 185 394 188 HOH HOH A . E 3 HOH 186 395 189 HOH HOH A . E 3 HOH 187 396 190 HOH HOH A . E 3 HOH 188 397 191 HOH HOH A . E 3 HOH 189 398 192 HOH HOH A . E 3 HOH 190 399 193 HOH HOH A . E 3 HOH 191 400 194 HOH HOH A . E 3 HOH 192 401 195 HOH HOH A . E 3 HOH 193 402 196 HOH HOH A . E 3 HOH 194 403 197 HOH HOH A . E 3 HOH 195 404 198 HOH HOH A . E 3 HOH 196 405 199 HOH HOH A . E 3 HOH 197 406 200 HOH HOH A . E 3 HOH 198 407 201 HOH HOH A . E 3 HOH 199 408 202 HOH HOH A . E 3 HOH 200 409 203 HOH HOH A . E 3 HOH 201 410 204 HOH HOH A . E 3 HOH 202 411 205 HOH HOH A . E 3 HOH 203 412 206 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 21 A MSE 20 ? MET SELENOMETHIONINE 3 A MSE 41 A MSE 40 ? MET SELENOMETHIONINE 4 A MSE 105 A MSE 104 ? MET SELENOMETHIONINE 5 A MSE 109 A MSE 108 ? MET SELENOMETHIONINE 6 A MSE 113 A MSE 112 ? MET SELENOMETHIONINE 7 A MSE 116 A MSE 115 ? MET SELENOMETHIONINE 8 A MSE 143 A MSE 142 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 29.5682 _pdbx_refine_tls.origin_y 26.7390 _pdbx_refine_tls.origin_z 13.5602 _pdbx_refine_tls.T[1][1] -0.0013 _pdbx_refine_tls.T[2][2] -0.0114 _pdbx_refine_tls.T[3][3] -0.0160 _pdbx_refine_tls.T[1][2] -0.0016 _pdbx_refine_tls.T[1][3] 0.0182 _pdbx_refine_tls.T[2][3] 0.0010 _pdbx_refine_tls.L[1][1] 0.2299 _pdbx_refine_tls.L[2][2] 0.4640 _pdbx_refine_tls.L[3][3] 0.1473 _pdbx_refine_tls.L[1][2] 0.1697 _pdbx_refine_tls.L[1][3] -0.0316 _pdbx_refine_tls.L[2][3] -0.1047 _pdbx_refine_tls.S[1][1] -0.0213 _pdbx_refine_tls.S[2][2] 0.0053 _pdbx_refine_tls.S[3][3] 0.0161 _pdbx_refine_tls.S[1][2] -0.0236 _pdbx_refine_tls.S[1][3] -0.0248 _pdbx_refine_tls.S[2][3] -0.0359 _pdbx_refine_tls.S[2][1] -0.1118 _pdbx_refine_tls.S[3][1] -0.0081 _pdbx_refine_tls.S[3][2] 0.0068 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 207 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 206 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. DNA SEQUENCING OF THE CLONED CONSTRUCT REVEALS A GLU AT POSITION 190 INSTEAD OF LYS. THIS IS CONSISTENT WITH THE OBSERVED ELECTRON DENSITY AT THIS POSITION. ; # _pdbx_entry_details.entry_id 3BDI _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;REMARK 999 SEQUENCE: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 DNA SEQUENCING OF THE CLONED CONSTRUCT REVEALS A GLU AT POSITION REMARK 999 190 INSTEAD OF LYS. THIS IS CONSISTENT WITH THE OBSERVED ELECTRON REMARK 999 DENSITY AT THIS POSITION. REMARK 999 ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 87 ? B O A HOH 318 ? ? 2.14 2 1 OE2 A GLU 87 ? A OH A TYR 120 ? ? 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 178 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 A _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 178 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 A _pdbx_validate_rmsd_bond.bond_value 1.171 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation -0.081 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 107 ? ? 62.67 -122.66 2 1 SER A 107 ? ? 62.67 -119.55 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 23 ? CG ? A ASP 24 CG 2 1 Y 1 A ASP 23 ? OD1 ? A ASP 24 OD1 3 1 Y 1 A ASP 23 ? OD2 ? A ASP 24 OD2 4 1 Y 1 A ARG 26 ? CD ? A ARG 27 CD 5 1 Y 1 A ARG 26 ? NE ? A ARG 27 NE 6 1 Y 1 A ARG 26 ? CZ ? A ARG 27 CZ 7 1 Y 1 A ARG 26 ? NH1 ? A ARG 27 NH1 8 1 Y 1 A ARG 26 ? NH2 ? A ARG 27 NH2 9 1 Y 1 A ARG 27 ? CZ ? A ARG 28 CZ 10 1 Y 1 A ARG 27 ? NH1 ? A ARG 28 NH1 11 1 Y 1 A ARG 27 ? NH2 ? A ARG 28 NH2 12 1 Y 1 A LYS 83 ? CE ? A LYS 84 CE 13 1 Y 1 A LYS 83 ? NZ ? A LYS 84 NZ 14 1 Y 1 A LYS 94 ? CE ? A LYS 95 CE 15 1 Y 1 A LYS 94 ? NZ ? A LYS 95 NZ 16 1 Y 1 A ARG 100 ? CD ? A ARG 101 CD 17 1 Y 1 A ARG 100 ? NE ? A ARG 101 NE 18 1 Y 1 A ARG 100 ? CZ ? A ARG 101 CZ 19 1 Y 1 A ARG 100 ? NH1 ? A ARG 101 NH1 20 1 Y 1 A ARG 100 ? NH2 ? A ARG 101 NH2 21 1 Y 1 A LYS 144 ? CG ? A LYS 145 CG 22 1 Y 1 A LYS 144 ? CD ? A LYS 145 CD 23 1 Y 1 A LYS 144 ? CE ? A LYS 145 CE 24 1 Y 1 A LYS 144 ? NZ ? A LYS 145 NZ 25 1 Y 1 A ARG 146 ? NH1 ? A ARG 147 NH1 26 1 Y 1 A ARG 146 ? NH2 ? A ARG 147 NH2 27 1 Y 1 A LYS 166 ? CD ? A LYS 167 CD 28 1 Y 1 A LYS 166 ? CE ? A LYS 167 CE 29 1 Y 1 A LYS 166 ? NZ ? A LYS 167 NZ 30 1 Y 1 A GLU 193 ? CD ? A GLU 194 CD 31 1 Y 1 A GLU 193 ? OE1 ? A GLU 194 OE1 32 1 Y 1 A GLU 193 ? OE2 ? A GLU 194 OE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 water HOH #