HEADER UNKNOWN FUNCTION 27-NOV-07 3BGU TITLE CRYSTAL STRUCTURE OF A DIMERIC FERREDOXIN-LIKE PROTEIN OF UNKNOWN TITLE 2 FUNCTION (TFU_0763) FROM THERMOBIFIDA FUSCA YX AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN-LIKE PROTEIN OF UNKNOWN FUNCTION; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 STRAIN: YX; SOURCE 5 GENE: YP_288824.1, TFU_0763; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS FERREDOXIN-LIKE FOLD, STRESS RESPONSIVE A/B BARREL DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3BGU 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BGU 1 REMARK LINK REVDAT 5 25-OCT-17 3BGU 1 REMARK REVDAT 4 13-JUL-11 3BGU 1 VERSN REVDAT 3 23-MAR-11 3BGU 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BGU 1 VERSN REVDAT 1 11-DEC-07 3BGU 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DIMERIC FERREDOXIN-LIKE PROTEIN OF JRNL TITL 2 UNKNOWN FUNCTION (YP_288824.1) FROM THERMOBIFIDA FUSCA YX AT JRNL TITL 3 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 35091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1762 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1769 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.60000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1802 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1190 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2435 ; 1.771 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2869 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ;11.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;33.905 ;23.977 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 248 ;13.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2071 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 386 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 365 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1232 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 824 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 947 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 119 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1132 ; 1.798 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 445 ; 0.529 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1767 ; 2.590 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 745 ; 4.488 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 668 ; 5.568 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -8 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7949 -26.1391 35.0825 REMARK 3 T TENSOR REMARK 3 T11: -0.0831 T22: -0.0346 REMARK 3 T33: -0.0018 T12: 0.0110 REMARK 3 T13: 0.0091 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.9331 L22: 0.5355 REMARK 3 L33: 1.5975 L12: 0.1347 REMARK 3 L13: 0.6365 L23: -0.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.0865 S12: -0.0415 S13: 0.0707 REMARK 3 S21: -0.0192 S22: -0.0004 S23: 0.0361 REMARK 3 S31: -0.1012 S32: -0.1933 S33: 0.0869 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -6 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9043 -45.3905 8.6630 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: -0.0961 REMARK 3 T33: -0.0770 T12: -0.0493 REMARK 3 T13: -0.0140 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.9595 L22: 0.8384 REMARK 3 L33: 3.9766 L12: 0.1417 REMARK 3 L13: 0.1932 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: -0.0841 S13: 0.0138 REMARK 3 S21: 0.0238 S22: -0.0379 S23: 0.0685 REMARK 3 S31: 0.7631 S32: -0.1795 S33: -0.0372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR REMARK 3 THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. RAMACHANDRAN OUTLIER OF RESIDUE ASN-5 AND GLU-6 REMARK 3 IN SUBUNIT A IS LOCATED IN POOR DENSITY. REMARK 3 5. N-TERMINAL HIS TAG IN CHAIN A (RESIDUES -3 TO -8) IS REMARK 3 SEVERELY DISORDERED. REMARK 3 6. ACETATE AND ETHYLENE GLYCOL ARE MODELED BASED ON REMARK 3 CRYSTALLIZATION CONDITIONS. REMARK 3 7. NITROBENZENE (NBZ) WAS MODELED BASED ON ELECTRON DENSITY. REMARK 4 REMARK 4 3BGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537, 0.9798, 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 27.206 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 50.0% ETHYLENE GLYCOL, 5.0% REMARK 280 PEG 1000, 0.1M SODIUM ACETATE PH 4.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 69.48475 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.32455 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 44.07000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -7 ND1 CD2 CE1 NE2 REMARK 470 GLU A -6 CB CG CD OE1 OE2 REMARK 470 LEU A -4 CG CD1 CD2 REMARK 470 GLU B -6 CG CD OE1 OE2 REMARK 470 LEU B -4 CD1 CD2 REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A -6 N - CA - C ANGL. DEV. = 20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A -6 48.51 100.28 REMARK 500 ASN A -5 127.99 50.17 REMARK 500 LEU A -4 33.30 -6.47 REMARK 500 TYR A -3 94.74 -170.91 REMARK 500 LEU A 30 54.18 -113.67 REMARK 500 ASN A 39 149.81 -170.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A -7 GLU A -6 31.36 REMARK 500 HIS A -7 GLU A -6 120.58 REMARK 500 ASN A -5 LEU A -4 117.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBZ A 112 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 378307 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. DBREF 3BGU A 1 97 UNP Q47RW6 Q47RW6_THEFY 1 97 DBREF 3BGU B 1 97 UNP Q47RW6 Q47RW6_THEFY 1 97 SEQADV 3BGU MSE A -18 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU GLY A -17 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU SER A -16 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU ASP A -15 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU LYS A -14 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU ILE A -13 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS A -12 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS A -11 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS A -10 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS A -9 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS A -8 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS A -7 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU GLU A -6 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU ASN A -5 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU LEU A -4 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU TYR A -3 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU PHE A -2 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU GLN A -1 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU GLY A 0 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU MSE B -18 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU GLY B -17 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU SER B -16 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU ASP B -15 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU LYS B -14 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU ILE B -13 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS B -12 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS B -11 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS B -10 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS B -9 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS B -8 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU HIS B -7 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU GLU B -6 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU ASN B -5 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU LEU B -4 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU TYR B -3 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU PHE B -2 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU GLN B -1 UNP Q47RW6 EXPRESSION TAG SEQADV 3BGU GLY B 0 UNP Q47RW6 EXPRESSION TAG SEQRES 1 A 116 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 116 ASN LEU TYR PHE GLN GLY MSE GLY ILE ARG HIS ILE ALA SEQRES 3 A 116 LEU PHE ARG TRP ASN ASP THR VAL THR PRO ASP GLN VAL SEQRES 4 A 116 GLU GLN VAL ILE THR ALA LEU SER LYS LEU PRO ALA ALA SEQRES 5 A 116 ILE PRO GLU LEU LYS ASN TYR ALA PHE GLY ALA ASP LEU SEQRES 6 A 116 GLY LEU ALA ALA GLY ASN TYR ASP PHE ALA VAL VAL ALA SEQRES 7 A 116 ASP LEU ASP GLY GLU ASP GLY PHE ARG ALA TYR GLN ASP SEQRES 8 A 116 HIS PRO ASP HIS ARG ALA ALA LEU ALA ILE ILE ALA PRO SEQRES 9 A 116 MSE LEU ALA ASP ARG VAL ALA VAL GLN PHE ALA LEU SEQRES 1 B 116 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 116 ASN LEU TYR PHE GLN GLY MSE GLY ILE ARG HIS ILE ALA SEQRES 3 B 116 LEU PHE ARG TRP ASN ASP THR VAL THR PRO ASP GLN VAL SEQRES 4 B 116 GLU GLN VAL ILE THR ALA LEU SER LYS LEU PRO ALA ALA SEQRES 5 B 116 ILE PRO GLU LEU LYS ASN TYR ALA PHE GLY ALA ASP LEU SEQRES 6 B 116 GLY LEU ALA ALA GLY ASN TYR ASP PHE ALA VAL VAL ALA SEQRES 7 B 116 ASP LEU ASP GLY GLU ASP GLY PHE ARG ALA TYR GLN ASP SEQRES 8 B 116 HIS PRO ASP HIS ARG ALA ALA LEU ALA ILE ILE ALA PRO SEQRES 9 B 116 MSE LEU ALA ASP ARG VAL ALA VAL GLN PHE ALA LEU MODRES 3BGU MSE A 1 MET SELENOMETHIONINE MODRES 3BGU MSE A 86 MET SELENOMETHIONINE MODRES 3BGU MSE B 1 MET SELENOMETHIONINE MODRES 3BGU MSE B 86 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 86 8 HET MSE B 1 8 HET MSE B 86 8 HET CL A 101 1 HET EDO A 102 4 HET EDO A 103 4 HET EDO A 104 4 HET EDO A 105 4 HET EDO A 106 4 HET EDO A 107 4 HET EDO A 108 4 HET EDO A 109 4 HET EDO A 110 4 HET EDO A 111 4 HET NBZ A 112 9 HET ACT B 102 4 HET EDO B 103 4 HET EDO B 104 4 HET EDO B 105 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NBZ NITROBENZENE HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 EDO 13(C2 H6 O2) FORMUL 14 NBZ C6 H5 N O2 FORMUL 15 ACT C2 H3 O2 1- FORMUL 19 HOH *176(H2 O) HELIX 1 1 THR A 16 LEU A 30 1 15 HELIX 2 2 GLY A 63 HIS A 73 1 11 HELIX 3 3 HIS A 73 ALA A 84 1 12 HELIX 4 4 THR B 16 LYS B 29 1 14 HELIX 5 5 LYS B 29 ILE B 34 1 6 HELIX 6 6 GLY B 63 HIS B 73 1 11 HELIX 7 7 HIS B 73 ALA B 84 1 12 SHEET 1 A 4 LEU A 37 ALA A 44 0 SHEET 2 A 4 PHE A 55 ASP A 62 -1 O ASP A 60 N ASN A 39 SHEET 3 A 4 GLY A 2 TRP A 11 -1 N HIS A 5 O ALA A 59 SHEET 4 A 4 LEU A 87 ALA A 96 -1 O ALA A 88 N ARG A 10 SHEET 1 B 4 ASN B 39 ALA B 44 0 SHEET 2 B 4 PHE B 55 ASP B 62 -1 O VAL B 58 N ALA B 41 SHEET 3 B 4 GLY B 2 TRP B 11 -1 N HIS B 5 O ALA B 59 SHEET 4 B 4 LEU B 87 ALA B 96 -1 O ALA B 88 N ARG B 10 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLY A 2 1555 1555 1.33 LINK C PRO A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N LEU A 87 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLY B 2 1555 1555 1.34 LINK C PRO B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N LEU B 87 1555 1555 1.35 SITE 1 AC1 5 ALA A 32 ALA A 33 ASP A 75 EDO A 105 SITE 2 AC1 5 HOH A 182 SITE 1 AC2 5 LEU B 27 TYR B 40 TYR B 70 HIS B 76 SITE 2 AC2 5 HOH B 172 SITE 1 AC3 7 HIS A 5 PHE A 67 GLN A 71 HIS A 76 SITE 2 AC3 7 NBZ A 112 HOH A 132 HOH A 160 SITE 1 AC4 5 LEU A 27 PRO A 31 TYR A 40 TYR A 70 SITE 2 AC4 5 HOH A 114 SITE 1 AC5 4 LYS A 38 ASP A 62 HOH A 171 ASP B 72 SITE 1 AC6 4 ALA A 33 HIS A 73 CL A 101 HOH A 192 SITE 1 AC7 2 ALA A 41 PHE A 42 SITE 1 AC8 5 TYR B 40 ALA B 41 HOH B 134 HOH B 141 SITE 2 AC8 5 HOH B 163 SITE 1 AC9 6 ASN A -5 LEU A -4 GLU A -6 ASP A 89 SITE 2 AC9 6 ARG A 90 VAL A 91 SITE 1 BC1 3 TRP A 11 ASP A 54 HOH A 169 SITE 1 BC2 4 GLY A 51 EDO A 110 EDO A 111 HOH A 158 SITE 1 BC3 4 PHE B 42 GLY B 43 HOH B 177 HOH B 178 SITE 1 BC4 6 ARG A 10 GLY A 51 ASN A 52 EDO A 109 SITE 2 BC4 6 HOH A 131 HOH A 169 SITE 1 BC5 6 ASP A 45 TYR A 53 ASP A 54 EDO A 109 SITE 2 BC5 6 HOH A 155 HOH A 205 SITE 1 BC6 3 LEU B -4 GLU B -6 ASN B -5 SITE 1 BC7 10 HIS A 5 ALA A 7 PHE A 9 LEU A 27 SITE 2 BC7 10 TYR A 70 HIS A 76 LEU A 80 ARG A 90 SITE 3 BC7 10 EDO A 102 HOH A 159 CRYST1 44.070 35.270 76.630 90.00 104.09 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022691 0.000000 0.005695 0.00000 SCALE2 0.000000 0.028353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013455 0.00000